RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:14:46 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/2_msa/P27539_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/3_mltree/P27539.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646886 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/2_msa/P27539_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 372 sites WARNING: Sequences tr_A0A1D5PGR5_A0A1D5PGR5_CHICK_9031 and tr_G1MSV0_G1MSV0_MELGA_9103 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_G1NMB0_G1NMB0_MELGA_9103 are exactly identical! WARNING: Sequences sp_P23359_BMP7_MOUSE_10090 and tr_G3V6W8_G3V6W8_RAT_10116 are exactly identical! WARNING: Sequences sp_Q04998_INHBA_MOUSE_10090 and sp_P18331_INHBA_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XUM5_M3XUM5_MUSPF_9669 and tr_E2RNJ0_E2RNJ0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XUM5_M3XUM5_MUSPF_9669 and tr_A0A384C573_A0A384C573_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y521_M3Y521_MUSPF_9669 and tr_A0A2U3X364_A0A2U3X364_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y521_M3Y521_MUSPF_9669 and tr_A0A2Y9IPN4_A0A2Y9IPN4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_H2PJF6_H2PJF6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_H2QT84_H2QT84_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and sp_P22003_BMP5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_F7H4M7_F7H4M7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_G7P2W6_G7P2W6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_A0A0D9RLD4_A0A0D9RLD4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_A0A2K5MWP5_A0A2K5MWP5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_A0A2K6C242_A0A2K6C242_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_A0A2K5XQZ9_A0A2K5XQZ9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QSM4_G1QSM4_NOMLE_61853 and tr_A0A2R8Z8H0_A0A2R8Z8H0_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_A0A2J8STG3_A0A2J8STG3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_H2QUH0_H2QUH0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and sp_P08476_INHBA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_G7P2B1_G7P2B1_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_A0A096NQU0_A0A096NQU0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_A0A0D9RRZ8_A0A0D9RRZ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_A0A2K6DP34_A0A2K6DP34_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_A0A2K5XN17_A0A2K5XN17_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2ZMR9_A0A2I2ZMR9_GORGO_9595 and tr_A0A2R9BD91_A0A2R9BD91_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NA46_G1NA46_MELGA_9103 and tr_A0A091JLD8_A0A091JLD8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NA46_G1NA46_MELGA_9103 and tr_A0A093PGL7_A0A093PGL7_9PASS_328815 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and sp_P18075_BMP7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A096NNJ3_A0A096NNJ3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A0D9RSE9_A0A0D9RSE9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A2K5KKN9_A0A2K5KKN9_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A2R9AT21_A0A2R9AT21_PANPA_9597 are exactly identical! WARNING: Sequences tr_B0XHY0_B0XHY0_CULQU_7176 and tr_B0XHY1_B0XHY1_CULQU_7176 are exactly identical! WARNING: Sequences tr_A0A088AQN8_A0A088AQN8_APIME_7460 and tr_A0A2A3EIB7_A0A2A3EIB7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A287D8G8_A0A287D8G8_ICTTR_43179 and tr_A0A286XBD0_A0A286XBD0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A287D8G8_A0A287D8G8_ICTTR_43179 and tr_A0A1D5QJR9_A0A1D5QJR9_MACMU_9544 are exactly identical! WARNING: Sequences tr_H0WNL2_H0WNL2_OTOGA_30611 and tr_A0A1U7TSM5_A0A1U7TSM5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F6ZJT0_F6ZJT0_MACMU_9544 and tr_G7PFT3_G7PFT3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3TG31_G3TG31_LOXAF_9785 and tr_A0A2Y9RTD5_A0A2Y9RTD5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YZG5_H0YZG5_TAEGU_59729 and tr_A0A091IVU3_A0A091IVU3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0YZG5_H0YZG5_TAEGU_59729 and tr_A0A218UB34_A0A218UB34_9PASE_299123 are exactly identical! WARNING: Sequences tr_G0MY06_G0MY06_CAEBE_135651 and tr_G0PL14_G0PL14_CAEBE_135651 are exactly identical! WARNING: Sequences tr_D2GYF9_D2GYF9_AILME_9646 and tr_A0A384D3U5_A0A384D3U5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XE00_M3XE00_FELCA_9685 and tr_A0A2Y9KJX6_A0A2Y9KJX6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_U3JGJ4_U3JGJ4_FICAL_59894 and tr_A0A093HXR7_A0A093HXR7_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3JGJ4_U3JGJ4_FICAL_59894 and tr_A0A091GJ85_A0A091GJ85_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3JGJ4_U3JGJ4_FICAL_59894 and tr_A0A091I476_A0A091I476_CALAN_9244 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A091F9F4_A0A091F9F4_CORBR_85066 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A091UPQ9_A0A091UPQ9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A087R890_A0A087R890_APTFO_9233 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A091W8G1_A0A091W8G1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A099ZL92_A0A099ZL92_TINGU_94827 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A0A0AKS8_A0A0A0AKS8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_R0LNE9_R0LNE9_ANAPL_8839 and tr_A0A091IBT1_A0A091IBT1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A096MMW8_A0A096MMW8_PAPAN_9555 and tr_A0A2K5MTU4_A0A2K5MTU4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NKT8_A0A096NKT8_PAPAN_9555 and tr_A0A2K5N9E7_A0A2K5N9E7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NKT8_A0A096NKT8_PAPAN_9555 and tr_A0A2K6CHI7_A0A2K6CHI7_MACNE_9545 are exactly identical! WARNING: Sequences tr_B0CM78_B0CM78_PAPAN_9555 and tr_A0A0D9RDH1_A0A0D9RDH1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_B0CM78_B0CM78_PAPAN_9555 and tr_A0A2K5NAV9_A0A2K5NAV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_B0CM78_B0CM78_PAPAN_9555 and tr_A0A2K6BCE3_A0A2K6BCE3_MACNE_9545 are exactly identical! WARNING: Sequences tr_B0CM78_B0CM78_PAPAN_9555 and tr_A0A2K5Z7Q6_A0A2K5Z7Q6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151P086_A0A151P086_ALLMI_8496 and tr_A0A1U7S1W5_A0A1U7S1W5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EC73_A0A091EC73_CORBR_85066 and tr_A0A093PIW4_A0A093PIW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EC73_A0A091EC73_CORBR_85066 and tr_A0A091W333_A0A091W333_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EC73_A0A091EC73_CORBR_85066 and tr_A0A087R1U6_A0A087R1U6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V3E0_A0A091V3E0_NIPNI_128390 and tr_A0A091I9M7_A0A091I9M7_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091VXT6_A0A091VXT6_NIPNI_128390 and tr_A0A0A0A6F4_A0A0A0A6F4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0A0AKP2_A0A0A0AKP2_CHAVO_50402 and tr_A0A091HVH4_A0A091HVH4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0MU94_A0A2I0MU94_COLLI_8932 and tr_A0A1V4JML8_A0A1V4JML8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V1CT11_A0A0V1CT11_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V0WSR4_A0A0V0WSR4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V0VIT9_A0A0V0VIT9_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V1LAN0_A0A0V1LAN0_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V1PEF8_A0A0V1PEF8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V0U9I7_A0A0V0U9I7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1D703_A0A0V1D703_TRIBR_45882 and tr_A0A0V1LLW5_A0A0V1LLW5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D703_A0A0V1D703_TRIBR_45882 and tr_A0A0V0UFH5_A0A0V0UFH5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A226MWB1_A0A226MWB1_CALSU_9009 and tr_A0A226PGR7_A0A226PGR7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4B164_A0A2U4B164_TURTR_9739 and tr_A0A2U4B1M1_A0A2U4B1M1_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4B164_A0A2U4B164_TURTR_9739 and tr_A0A2Y9NT83_A0A2Y9NT83_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B164_A0A2U4B164_TURTR_9739 and tr_A0A2Y9SH31_A0A2Y9SH31_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4B164_A0A2U4B164_TURTR_9739 and tr_A0A384AIG3_A0A384AIG3_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 85 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539.raxml.reduced.phy Alignment comprises 1 partitions and 372 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 372 Gaps: 28.85 % Invariant sites: 1.61 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/3_mltree/P27539.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 93 / 7440 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -205443.134494 [00:00:00 -205443.134494] Initial branch length optimization [00:00:01 -124563.567829] Model parameter optimization (eps = 0.100000) [00:00:40] Tree #1, final logLikelihood: -124435.730223 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.197807,0.164532) (0.159489,0.463791) (0.281150,0.786531) (0.361554,1.859617) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P27539/4_raxmlng_ancestral/P27539.raxml.log Analysis started: 02-Jun-2021 18:14:46 / finished: 02-Jun-2021 18:15:30 Elapsed time: 44.713 seconds Consumed energy: 3.157 Wh