RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 05-Jul-2021 17:27:43 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/2_msa/P25490_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/2_msa/P25490_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 125 sites WARNING: Sequences tr_V7CQL8_V7CQL8_PHAVU_3885 and tr_A0A0L9TIJ7_A0A0L9TIJ7_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7CQL8_V7CQL8_PHAVU_3885 and tr_A0A1S3UIW5_A0A1S3UIW5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_B4QN69_B4QN69_DROSI_7240 and tr_Q9VSZ3_Q9VSZ3_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QN69_B4QN69_DROSI_7240 and tr_B4HL45_B4HL45_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R2J1_B4R2J1_DROSI_7240 and tr_B4IKS0_B4IKS0_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_K7ILX7_K7ILX7_NASVI_7425 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A088AD22_A0A088AD22_APIME_7460 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A158NK84_A0A158NK84_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_F4W8I3_F4W8I3_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A026X221_A0A026X221_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A0L7QX02_A0A0L7QX02_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A151X727_A0A151X727_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A154PEN5_A0A154PEN5_9HYME_178035 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A195EI15_A0A195EI15_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A195B9Z8_A0A195B9Z8_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A195FBS0_A0A195FBS0_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AVF0_E2AVF0_CAMFO_104421 and tr_A0A151I7J5_A0A151I7J5_9HYME_456900 are exactly identical! WARNING: Sequences tr_Q7T1S3_Q7T1S3_DANRE_7955 and tr_A0A3B1K5B1_A0A3B1K5B1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q7T1S3_Q7T1S3_DANRE_7955 and tr_A0A1S3SMG1_A0A1S3SMG1_SALSA_8030 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_G1N3E1_G1N3E1_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_H0ZCX3_H0ZCX3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_U3JE20_U3JE20_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_U3I3P3_U3I3P3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A0Q3MJV6_A0A0Q3MJV6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A091EEN6_A0A091EEN6_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A091JMZ8_A0A091JMZ8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A091VX96_A0A091VX96_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A087RK95_A0A087RK95_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A091W4N6_A0A091W4N6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A091GCF6_A0A091GCF6_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A0A0AY49_A0A0A0AY49_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A2I0MI65_A0A2I0MI65_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A093GVP4_A0A093GVP4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A1V4JPC0_A0A1V4JPC0_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A218UQM1_A0A218UQM1_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A226MXG1_A0A226MXG1_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C5B8_E1C5B8_CHICK_9031 and tr_A0A226PLF5_A0A226PLF5_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_G1NJ05_G1NJ05_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A091JPB5_A0A091JPB5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A091X3L0_A0A091X3L0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A087R4T7_A0A087R4T7_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A093HJR3_A0A093HJR3_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A091WFU3_A0A091WFU3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A099YTN9_A0A099YTN9_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A0A0ALL4_A0A0A0ALL4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A2I0MNJ7_A0A2I0MNJ7_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A093HC12_A0A093HC12_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A091HPU7_A0A091HPU7_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A1V4KFV0_A0A1V4KFV0_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NEH8_F1NEH8_CHICK_9031 and tr_A0A226NH41_A0A226NH41_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and sp_Q00899_TYY1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_H2MLJ8_H2MLJ8_ORYLA_8090 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_G3S7S5_G3S7S5_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_E2RHE9_E2RHE9_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_K7DAI9_K7DAI9_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_F7BM88_F7BM88_MONDO_13616 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_Q8CHJ4_Q8CHJ4_RAT_10116 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A3B5QW41_A0A3B5QW41_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_I3KW35_I3KW35_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and sp_P25490_TYY1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1D5R1Y3_A0A1D5R1Y3_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_K7GCJ7_K7GCJ7_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_G3P174_G3P174_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_F6VSC6_F6VSC6_XENTR_8364 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_U3DWR2_U3DWR2_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_K9IVK7_K9IVK7_PIG_9823 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_G1LXD5_G1LXD5_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_F1MFX0_F1MFX0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_L5JQI3_L5JQI3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A337SDD4_A0A337SDD4_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_U3JJ42_U3JJ42_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_W5KFE9_W5KFE9_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_W5N0Y0_W5N0Y0_LEPOC_7918 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A087XPF1_A0A087XPF1_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A0P7UHB1_A0A0P7UHB1_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A0Q3PNC5_A0A0Q3PNC5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1S3MB36_A0A1S3MB36_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1S3SAC4_A0A1S3SAC4_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1L8F039_A0A1L8F039_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1L8F9Y2_A0A1L8F9Y2_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1U8DKN9_A0A1U8DKN9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A1U8BW63_A0A1U8BW63_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2I4BNT5_A0A2I4BNT5_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A218V2T1_A0A218V2T1_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2D0Q100_A0A2D0Q100_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2K5NG43_A0A2K5NG43_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2U3VKW8_A0A2U3VKW8_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2U3YC90_A0A2U3YC90_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2U9CJ05_A0A2U9CJ05_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2Y9JI76_A0A2Y9JI76_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NHV6_F1NHV6_CHICK_9031 and tr_A0A2Y9NCB3_A0A2Y9NCB3_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_G1MVN8_G1MVN8_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A0Q3XAV6_A0A0Q3XAV6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A091JDP2_A0A091JDP2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A091VK86_A0A091VK86_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A087RCL8_A0A087RCL8_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A093HWT2_A0A093HWT2_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A091GCD6_A0A091GCD6_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A0A0A6I4_A0A0A0A6I4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A093H7K0_A0A093H7K0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A091IH91_A0A091IH91_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q5ZLE7_Q5ZLE7_CHICK_9031 and tr_A0A226NGS4_A0A226NGS4_CALSU_9009 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_M3YAC0_M3YAC0_MUSPF_9669 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_G1Q5T0_G1Q5T0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_G3HWW1_G3HWW1_CRIGR_10029 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2I2Y6M6_A0A2I2Y6M6_GORGO_9595 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_H2NXA4_H2NXA4_PONAB_9601 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_G1TJ45_G1TJ45_RABIT_9986 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_J9P012_J9P012_CANLF_9615 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_H2R6F0_H2R6F0_PANTR_9598 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_D3ZRG3_D3ZRG3_RAT_10116 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_I3N2E8_I3N2E8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_H0Y0Y9_H0Y0Y9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_H0VF92_H0VF92_CAVPO_10141 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and sp_Q9NW07_ZN358_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_G3TLT6_G3TLT6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2R8PJG1_A0A2R8PJG1_CALJA_9483 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A287BQZ2_A0A287BQZ2_PIG_9823 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_L5K9R2_L5K9R2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2I3MUS0_A0A2I3MUS0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A0D9SBV6_A0A0D9SBV6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A1U7R3U4_A0A1U7R3U4_MESAU_10036 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2K5N1E4_A0A2K5N1E4_CERAT_9531 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2K6CX73_A0A2K6CX73_MACNE_9545 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2R8ZED3_A0A2R8ZED3_PANPA_9597 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2U4B441_A0A2U4B441_TURTR_9739 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2U3WSC7_A0A2U3WSC7_ODORO_9708 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2U3Z7D3_A0A2U3Z7D3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2Y9DQM7_A0A2Y9DQM7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2Y9L5G4_A0A2Y9L5G4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2Y9M1S8_A0A2Y9M1S8_DELLE_9749 are exactly identical! WARNING: Sequences tr_E9Q8M1_E9Q8M1_MOUSE_10090 and tr_A0A2Y9EQG6_A0A2Y9EQG6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_O70230_ZN143_MOUSE_10090 and tr_G3I7Z9_G3I7Z9_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O70230_ZN143_MOUSE_10090 and tr_G1SNG9_G1SNG9_RABIT_9986 are exactly identical! WARNING: Sequences sp_O70230_ZN143_MOUSE_10090 and sp_Q5XIU2_ZN143_RAT_10116 are exactly identical! WARNING: Sequences sp_O70230_ZN143_MOUSE_10090 and tr_A0A287DDM2_A0A287DDM2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O70230_ZN143_MOUSE_10090 and tr_A0A3Q0CZ53_A0A3Q0CZ53_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_M3YSW8_M3YSW8_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_G1RLW0_G1RLW0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_H2N7X4_H2N7X4_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_H2R0J1_H2R0J1_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_I3N1E6_I3N1E6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A1D5QTP0_A0A1D5QTP0_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_G5C6H8_G5C6H8_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_G7NUB1_G7NUB1_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_M3WEC6_M3WEC6_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A096N999_A0A096N999_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A0D9S7Q6_A0A0D9S7Q6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A1U7TIG8_A0A1U7TIG8_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A2K6D1A4_A0A2K6D1A4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A2R9ASU3_A0A2R9ASU3_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A2U3ZI42_A0A2U3ZI42_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A2Y9IVA3_A0A2Y9IVA3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q07243_MTF1_MOUSE_10090 and tr_A0A384CDR4_A0A384CDR4_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q8BKX7_ZN410_MOUSE_10090 and tr_B4F792_B4F792_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_M3XWP2_M3XWP2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G1PBU3_G1PBU3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G3HRZ5_G3HRZ5_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G3RE66_G3RE66_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_H2PIS9_H2PIS9_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G1U780_G1U780_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_E2RAQ6_E2RAQ6_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_H2R7D7_H2R7D7_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_F7DRR1_F7DRR1_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_I3LW91_I3LW91_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_H0V9Z7_H0V9Z7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G5BCF1_G5BCF1_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G3TY40_G3TY40_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_F6V1I9_F6V1I9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_I3L7Y8_I3L7Y8_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G1L1R0_G1L1R0_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_G7P2U9_G7P2U9_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_E1BND9_E1BND9_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_L5KZJ9_L5KZJ9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_M3W4X4_M3W4X4_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A096NHN0_A0A096NHN0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A091CUE9_A0A091CUE9_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A0D9RC55_A0A0D9RC55_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A1S3ACR1_A0A1S3ACR1_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A1S3G8A1_A0A1S3G8A1_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A3Q0E051_A0A3Q0E051_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A3Q0DFD1_A0A3Q0DFD1_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2K5KJL6_A0A2K5KJL6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2K6CS79_A0A2K6CS79_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2K5ZY72_A0A2K5ZY72_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2R9B6W2_A0A2R9B6W2_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2U4CJH4_A0A2U4CJH4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2U3WGI7_A0A2U3WGI7_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2U3Z5C6_A0A2U3Z5C6_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2Y9QGB4_A0A2Y9QGB4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2Y9K0G1_A0A2Y9K0G1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2Y9P5F9_A0A2Y9P5F9_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A2Y9EWR6_A0A2Y9EWR6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q8BMU0_ZNF76_MOUSE_10090 and tr_A0A384BEE3_A0A384BEE3_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_G1NSS3_G1NSS3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2I2Z5R5_A0A2I2Z5R5_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2J8UPS8_A0A2J8UPS8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_E2RIV8_E2RIV8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2I3SCF5_A0A2I3SCF5_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_F7A7X2_F7A7X2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_H0X4Z6_H0X4Z6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A286Y3U8_A0A286Y3U8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and sp_P52747_ZN143_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A1D5QYJ1_A0A1D5QYJ1_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_G5BRK9_G5BRK9_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2R8MSD7_A0A2R8MSD7_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_G1LB42_G1LB42_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_G7PQR4_G7PQR4_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A337SAB0_A0A337SAB0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A096N6I6_A0A096N6I6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A091CNP3_A0A091CNP3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A0D9QWW6_A0A0D9QWW6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A3Q0DX66_A0A3Q0DX66_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2K5MG14_A0A2K5MG14_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2K6DDC1_A0A2K6DDC1_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2K5ZZE5_A0A2K5ZZE5_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2R9CAZ1_A0A2R9CAZ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2U3ZA19_A0A2U3ZA19_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2U3XAQ3_A0A2U3XAQ3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2Y9D861_A0A2Y9D861_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A2Y9L8Q9_A0A2Y9L8Q9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMZ4_M3YMZ4_MUSPF_9669 and tr_A0A384BIN3_A0A384BIN3_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_G1RHV2_G1RHV2_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_H0XIR8_H0XIR8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A1D5QGJ5_A0A1D5QGJ5_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A287AW01_A0A287AW01_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A0A0MU01_A0A0A0MU01_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A0D9SE62_A0A0D9SE62_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A2K5NER9_A0A2K5NER9_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A2K6DHT8_A0A2K6DHT8_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A2U3W9V0_A0A2U3W9V0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z8Z2_M3Z8Z2_MUSPF_9669 and tr_A0A2Y9IH32_A0A2Y9IH32_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2MHF5_H2MHF5_ORYLA_8090 and tr_A0A2I4C9N2_A0A2I4C9N2_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2MLJ9_H2MLJ9_ORYLA_8090 and tr_M4A1W9_M4A1W9_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MLJ9_H2MLJ9_ORYLA_8090 and tr_I3IWZ3_I3IWZ3_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MLJ9_H2MLJ9_ORYLA_8090 and tr_H3CZH2_H3CZH2_TETNG_99883 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_H2NXU3_H2NXU3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A1D5QJK0_A0A1D5QJK0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_G7PZM3_G7PZM3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2I3LSU0_A0A2I3LSU0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A0D9R1Q8_A0A0D9R1Q8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2K5MX30_A0A2K5MX30_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QZ63_G1QZ63_NOMLE_61853 and tr_A0A2K5YJ92_A0A2K5YJ92_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RXT2_G1RXT2_NOMLE_61853 and tr_A0A096MQJ3_A0A096MQJ3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RXT2_G1RXT2_NOMLE_61853 and tr_A0A2K5NEY6_A0A2K5NEY6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RXT2_G1RXT2_NOMLE_61853 and tr_A0A2K6DDX3_A0A2K6DDX3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RXT2_G1RXT2_NOMLE_61853 and tr_A0A2K5Y5B3_A0A2K5Y5B3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_E2RTL0_E2RTL0_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_F7CSW0_F7CSW0_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_H0VEZ8_H0VEZ8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_G3TK64_G3TK64_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_G1MIU1_G1MIU1_AILME_9646 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_M3XFP4_M3XFP4_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_A0A2U3VVH9_A0A2U3VVH9_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_A0A2Y9QJX0_A0A2Y9QJX0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1PBY3_G1PBY3_MYOLU_59463 and tr_A0A384CTJ2_A0A384CTJ2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_H2PXS7_H2PXS7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_G1NKS5_G1NKS5_MELGA_9103 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_H9GJW3_H9GJW3_ANOCA_28377 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_F7AC13_F7AC13_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_H0WVA2_H0WVA2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_H0ZR87_H0ZR87_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_R0L4E3_R0L4E3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A091EIE0_A0A091EIE0_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A091J3L7_A0A091J3L7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A093PZ49_A0A093PZ49_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A091V9L8_A0A091V9L8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A087R576_A0A087R576_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A093HRE7_A0A093HRE7_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A091WA60_A0A091WA60_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A099ZD15_A0A099ZD15_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A091G185_A0A091G185_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A0A0AW39_A0A0A0AW39_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A093I5H9_A0A093I5H9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A091I3Z4_A0A091I3Z4_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A1V4KC75_A0A1V4KC75_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1QAX8_G1QAX8_MYOLU_59463 and tr_A0A2K5YVK2_A0A2K5YVK2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2YXR8_A0A2I2YXR8_GORGO_9595 and tr_H2PX48_H2PX48_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YXR8_A0A2I2YXR8_GORGO_9595 and tr_A0A2I3TA29_A0A2I3TA29_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YXR8_A0A2I2YXR8_GORGO_9595 and sp_A6NM28_ZFP92_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YXR8_A0A2I2YXR8_GORGO_9595 and tr_A0A2R9A217_A0A2R9A217_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QT22_G3QT22_GORGO_9595 and tr_A0A2J8L7X1_A0A2J8L7X1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QT22_G3QT22_GORGO_9595 and tr_A0A2R8ZF78_A0A2R8ZF78_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S3A2_G3S3A2_GORGO_9595 and tr_A0A2I3TEI2_A0A2I3TEI2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S3A2_G3S3A2_GORGO_9595 and sp_Q5EBL2_ZN628_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H9GP28_H9GP28_ANOCA_28377 and tr_F7EKT5_F7EKT5_MONDO_13616 are exactly identical! WARNING: Sequences tr_H9GP28_H9GP28_ANOCA_28377 and tr_K7FDS6_K7FDS6_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q29EF2_Q29EF2_DROPS_46245 and tr_B4H1Y2_B4H1Y2_DROPE_7234 are exactly identical! WARNING: Sequences tr_G2HIU0_G2HIU0_PANTR_9598 and sp_Q8TC21_ZN596_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F6XY85_F6XY85_ORNAN_9258 and tr_G3WPK5_G3WPK5_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7GEQ3_F7GEQ3_MONDO_13616 and tr_G3VPZ7_G3VPZ7_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5NRJ4_W5NRJ4_SHEEP_9940 and sp_Q5EAC5_ZN410_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_I3LDQ7_I3LDQ7_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and sp_A6QQW0_ZN143_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2U4CEK6_A0A2U4CEK6_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2U4CEK8_A0A2U4CEK8_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2U4CEK9_A0A2U4CEK9_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2U4CEL0_A0A2U4CEL0_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2Y9LWH2_A0A2Y9LWH2_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2Y9MIK2_A0A2Y9MIK2_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A2Y9SFU9_A0A2Y9SFU9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PSE2_W5PSE2_SHEEP_9940 and tr_A0A383ZCR3_A0A383ZCR3_BALAS_310752 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_W7MFB3_W7MFB3_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_S0DHT2_S0DHT2_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_X0CHB4_X0CHB4_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_A0A2H3SV07_A0A2H3SV07_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_A0A2H3I3C4_A0A2H3I3C4_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_A0A2K0WA08_A0A2K0WA08_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9FIB4_F9FIB4_FUSOF_660025 and tr_A0A366RJP2_A0A366RJP2_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_M4AJK5_M4AJK5_XIPMA_8083 and tr_A0A087Y7P1_A0A087Y7P1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AHI0_A0A088AHI0_APIME_7460 and tr_A0A2A3EC40_A0A2A3EC40_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NG25_A0A158NG25_ATTCE_12957 and tr_A0A151I1H9_A0A151I1H9_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3MSS4_I3MSS4_ICTTR_43179 and tr_A0A2R8M2R2_A0A2R8M2R2_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2TPI5_H2TPI5_TAKRU_31033 and tr_A0A087X8R6_A0A087X8R6_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2TPI5_H2TPI5_TAKRU_31033 and tr_A0A2U9CT59_A0A2U9CT59_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2U4I2_H2U4I2_TAKRU_31033 and tr_Q4RM50_Q4RM50_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q86VK4_ZN410_HUMAN_9606 and tr_A0A0D9RJQ3_A0A0D9RJQ3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q86VK4_ZN410_HUMAN_9606 and tr_A0A2K5YXK9_A0A2K5YXK9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0E0G832_A0A0E0G832_ORYNI_4536 and tr_B8AJE1_B8AJE1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G832_A0A0E0G832_ORYNI_4536 and tr_I1P176_I1P176_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G832_A0A0E0G832_ORYNI_4536 and tr_A0A0E0CLU4_A0A0E0CLU4_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0G832_A0A0E0G832_ORYNI_4536 and tr_A0A0D3F699_A0A0D3F699_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_A2XZG9_A2XZG9_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_I1PRP8_I1PRP8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_A0A0E0DKW2_A0A0E0DKW2_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_A0A0E0PGF4_A0A0E0PGF4_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_A0A0D3G2B7_A0A0D3G2B7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_A0A0D9ZT65_A0A0D9ZT65_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_A0A0E0KXJ2_A0A0E0KXJ2_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0H8D5_A0A0E0H8D5_ORYNI_4536 and tr_Q65XI2_Q65XI2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A2K1R959_A0A2K1R959_POPTR_3694 and tr_U7E1K0_U7E1K0_POPTR_3694 are exactly identical! WARNING: Sequences tr_K7FS54_K7FS54_PELSI_13735 and tr_A0A151MC12_A0A151MC12_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7FS54_K7FS54_PELSI_13735 and tr_A0A093HQV1_A0A093HQV1_STRCA_441894 are exactly identical! WARNING: Sequences tr_K7FS54_K7FS54_PELSI_13735 and tr_A0A099Z5S7_A0A099Z5S7_TINGU_94827 are exactly identical! WARNING: Sequences tr_K7FS54_K7FS54_PELSI_13735 and tr_A0A1U7RRM9_A0A1U7RRM9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0ZPA9_H0ZPA9_TAEGU_59729 and tr_U3JUP3_U3JUP3_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZPA9_H0ZPA9_TAEGU_59729 and tr_A0A218VES0_A0A218VES0_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4WTL3_F4WTL3_ACREC_103372 and tr_A0A195F248_A0A195F248_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A0E0NGA5_A0A0E0NGA5_ORYRU_4529 and tr_Q0E0H1_Q0E0H1_ORYSJ_39947 are exactly identical! WARNING: Sequences sp_Q58DZ6_ZN143_XENTR_8364 and tr_A0A1L8GE70_A0A1L8GE70_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q58DZ6_ZN143_XENTR_8364 and tr_A0A1L8GIJ2_A0A1L8GIJ2_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A0Q9WY04_A0A0Q9WY04_DROVI_7244 and tr_D0Z777_D0Z777_DROVI_7244 are exactly identical! WARNING: Sequences tr_A0A0Q9WY04_A0A0Q9WY04_DROVI_7244 and tr_A0A0M4ET97_A0A0M4ET97_DROBS_30019 are exactly identical! WARNING: Sequences tr_I1K492_I1K492_SOYBN_3847 and tr_K7L6A1_K7L6A1_SOYBN_3847 are exactly identical! WARNING: Sequences tr_G1LSH1_G1LSH1_AILME_9646 and tr_L5KF60_L5KF60_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1LSH1_G1LSH1_AILME_9646 and tr_A0A1S3GNZ2_A0A1S3GNZ2_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1LSH1_G1LSH1_AILME_9646 and tr_A0A2U3W9W8_A0A2U3W9W8_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1LSH1_G1LSH1_AILME_9646 and tr_A0A2Y9FYL9_A0A2Y9FYL9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_B3RKD6_B3RKD6_TRIAD_10228 and tr_A0A369S126_A0A369S126_9METZ_287889 are exactly identical! WARNING: Sequences tr_L0PHI9_L0PHI9_PNEJ8_1209962 and tr_A0A0W4ZJS6_A0A0W4ZJS6_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_M4EK69_M4EK69_BRARP_51351 and tr_A0A078HLS8_A0A078HLS8_BRANA_3708 are exactly identical! WARNING: Sequences tr_T1KCQ7_T1KCQ7_TETUR_32264 and tr_T1KCS3_T1KCS3_TETUR_32264 are exactly identical! WARNING: Sequences tr_W2QHE0_W2QHE0_PHYPN_761204 and tr_A0A0W8DR41_A0A0W8DR41_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QHE0_W2QHE0_PHYPN_761204 and tr_W2LLL3_W2LLL3_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2QHE0_W2QHE0_PHYPN_761204 and tr_A0A329S977_A0A329S977_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A3B5YQC1_A0A3B5YQC1_WHEAT_4565 and tr_A0A3B5ZMK5_A0A3B5ZMK5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6NR40_A0A3B6NR40_WHEAT_4565 and tr_A0A3B6QH50_A0A3B6QH50_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015KG92_A0A015KG92_9GLOM_1432141 and tr_A0A2H5SXI2_A0A2H5SXI2_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015KV85_A0A015KV85_9GLOM_1432141 and tr_A0A015LBW8_A0A015LBW8_9GLOM_1432141 are exactly identical! WARNING: Sequences tr_A0A015KV85_A0A015KV85_9GLOM_1432141 and tr_A0A2I1FY12_A0A2I1FY12_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015LCR0_A0A015LCR0_9GLOM_1432141 and tr_A0A2H5RI70_A0A2H5RI70_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015LX92_A0A015LX92_9GLOM_1432141 and tr_A0A2I1GSK5_A0A2I1GSK5_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015LX92_A0A015LX92_9GLOM_1432141 and tr_A0A2H5RMH1_A0A2H5RMH1_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067QQM2_A0A067QQM2_ZOONE_136037 and tr_A0A2J7R5U4_A0A2J7R5U4_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067D220_A0A067D220_SAPPC_695850 and tr_T0QCS4_T0QCS4_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0D2NR21_A0A0D2NR21_GOSRA_29730 and tr_A0A1U8L479_A0A1U8L479_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2NR21_A0A0D2NR21_GOSRA_29730 and tr_A0A1U8LAN2_A0A1U8LAN2_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0N0DFY5_A0A0N0DFY5_FUSLA_179993 and tr_A0A1B8B4C0_A0A1B8B4C0_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0N0DFY5_A0A0N0DFY5_FUSLA_179993 and tr_A0A2T4HBR4_A0A2T4HBR4_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A0N0DFY5_A0A0N0DFY5_FUSLA_179993 and tr_A0A2L2TIN0_A0A2L2TIN0_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A151NFM8_A0A151NFM8_ALLMI_8496 and tr_A0A1U8DPW9_A0A1U8DPW9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NKL2_A0A151NKL2_ALLMI_8496 and tr_A0A3Q0GBQ4_A0A3Q0GBQ4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NTP6_A0A151NTP6_ALLMI_8496 and tr_A0A3Q0FW37_A0A3Q0FW37_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NYA6_A0A151NYA6_ALLMI_8496 and tr_A0A1U8D723_A0A1U8D723_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A194PTW2_A0A194PTW2_PAPXU_66420 and tr_A0A2A4IZF0_A0A2A4IZF0_HELVI_7102 are exactly identical! WARNING: Sequences tr_A0A0V1D0G8_A0A0V1D0G8_TRIBR_45882 and tr_A0A0V0ZB26_A0A0V0ZB26_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1KTF9_A0A0V1KTF9_9BILA_6335 and tr_A0A0V1P757_A0A0V1P757_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1KTF9_A0A0V1KTF9_9BILA_6335 and tr_A0A0V1H729_A0A0V1H729_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A194VTK6_A0A194VTK6_9PEZI_105487 and tr_A0A194V484_A0A194V484_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1S3Y2F2_A0A1S3Y2F2_TOBAC_4097 and tr_Q9ZQT8_Q9ZQT8_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3Y2F2_A0A1S3Y2F2_TOBAC_4097 and tr_A0A314KMZ6_A0A314KMZ6_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3Y2F2_A0A1S3Y2F2_TOBAC_4097 and tr_A0A1U7W192_A0A1U7W192_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3I7S2_A0A1S3I7S2_LINUN_7574 and tr_A0A1S3IA78_A0A1S3IA78_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3IRE2_A0A1S3IRE2_LINUN_7574 and tr_A0A1S3JYX2_A0A1S3JYX2_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3SLN1_A0A1S3SLN1_SALSA_8030 and tr_A0A060XWT4_A0A060XWT4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X4I6_B5X4I6_SALSA_8030 and tr_A0A060Y6X1_A0A060Y6X1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MBR8_A0A226MBR8_CALSU_9009 and tr_A0A226MBN3_A0A226MBN3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N4I2_A0A226N4I2_CALSU_9009 and tr_A0A226PHX1_A0A226PHX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RLG4_A0A2D0RLG4_ICTPU_7998 and tr_W5UEE0_W5UEE0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2ZZU5_A0A2G2ZZU5_CAPAN_4072 and tr_A0A2G3CX49_A0A2G3CX49_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2C5YUA0_A0A2C5YUA0_9HYPO_2004952 and tr_A0A369GM01_A0A369GM01_9HYPO_2039875 are exactly identical! WARNING: Sequences tr_A0A2C5YUA0_A0A2C5YUA0_9HYPO_2004952 and tr_A0A369HHT8_A0A369HHT8_9HYPO_2039874 are exactly identical! WARNING: Sequences tr_A0A2C5YUA0_A0A2C5YUA0_9HYPO_2004952 and tr_A0A367LBG7_A0A367LBG7_9HYPO_1330021 are exactly identical! WARNING: Sequences tr_A0A2U4A7N1_A0A2U4A7N1_TURTR_9739 and tr_A0A2Y9NSC4_A0A2Y9NSC4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A7N1_A0A2U4A7N1_TURTR_9739 and tr_A0A2Y9EU01_A0A2Y9EU01_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4A7N1_A0A2U4A7N1_TURTR_9739 and tr_A0A384AB29_A0A384AB29_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9PEG2_A0A2Y9PEG2_DELLE_9749 and tr_A0A2Y9S4C0_A0A2Y9S4C0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A367J023_A0A367J023_9FUNG_86630 and tr_A0A367KCW2_A0A367KCW2_9FUNG_86630 are exactly identical! WARNING: Duplicate sequences found: 398 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.reduced.phy Alignment comprises 1 partitions and 125 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 125 / 125 Gaps: 4.42 % Invariant sites: 2.40 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 125 / 10000 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -205832.908592] Initial branch length optimization [00:00:02 -166276.355980] Model parameter optimization (eps = 10.000000) [00:00:37 -165850.265922] AUTODETECT spr round 1 (radius: 5) [00:02:57 -110779.081682] AUTODETECT spr round 2 (radius: 10) [00:05:27 -81747.598323] AUTODETECT spr round 3 (radius: 15) [00:08:01 -63810.175131] AUTODETECT spr round 4 (radius: 20) [00:10:49 -48904.572380] AUTODETECT spr round 5 (radius: 25) [00:13:53 -45076.912737] SPR radius for FAST iterations: 25 (autodetect) [00:13:53 -45076.912737] Model parameter optimization (eps = 3.000000) [00:14:13 -45058.636371] FAST spr round 1 (radius: 25) [00:16:51 -38479.425009] FAST spr round 2 (radius: 25) [00:18:56 -38064.321360] FAST spr round 3 (radius: 25) [00:20:52 -38026.118836] FAST spr round 4 (radius: 25) [00:22:37 -38017.263567] FAST spr round 5 (radius: 25) [00:24:20 -38015.060749] FAST spr round 6 (radius: 25) [00:25:56 -38015.059870] Model parameter optimization (eps = 1.000000) [00:26:10 -38013.392585] SLOW spr round 1 (radius: 5) [00:27:56 -38004.907446] SLOW spr round 2 (radius: 5) [00:29:44 -38003.757728] SLOW spr round 3 (radius: 5) [00:31:33 -38003.756570] SLOW spr round 4 (radius: 10) [00:33:28 -38002.244855] SLOW spr round 5 (radius: 5) [00:35:39 -37998.890671] SLOW spr round 6 (radius: 5) [00:37:39 -37998.219222] SLOW spr round 7 (radius: 5) [00:39:32 -37998.219196] SLOW spr round 8 (radius: 10) [00:41:29 -37998.219167] SLOW spr round 9 (radius: 15) [00:44:21 -37996.001319] SLOW spr round 10 (radius: 5) [00:46:37 -37993.692321] SLOW spr round 11 (radius: 5) [00:48:42 -37993.034270] SLOW spr round 12 (radius: 5) [00:50:38 -37992.316666] SLOW spr round 13 (radius: 5) [00:52:27 -37992.268729] SLOW spr round 14 (radius: 10) [00:54:24 -37991.806524] SLOW spr round 15 (radius: 5) [00:56:34 -37991.379919] SLOW spr round 16 (radius: 5) [00:58:32 -37991.379755] SLOW spr round 17 (radius: 10) [00:58:50] [worker #1] ML tree search #2, logLikelihood: -36629.692097 [01:00:32 -37991.379743] SLOW spr round 18 (radius: 15) [01:03:18 -37991.379742] SLOW spr round 19 (radius: 20) [01:07:13 -37983.490490] SLOW spr round 20 (radius: 5) [01:09:33 -37924.491471] SLOW spr round 21 (radius: 5) [01:11:37 -37924.491465] SLOW spr round 22 (radius: 10) [01:13:39 -37924.491456] SLOW spr round 23 (radius: 15) [01:16:24 -37924.491454] SLOW spr round 24 (radius: 20) [01:20:18 -37924.491454] SLOW spr round 25 (radius: 25) [01:25:12 -37924.491441] Model parameter optimization (eps = 0.100000) [01:25:18] [worker #0] ML tree search #1, logLikelihood: -37924.470473 [01:25:18 -203852.895935] Initial branch length optimization [01:25:21 -165047.559561] Model parameter optimization (eps = 10.000000) [01:26:05 -164545.531691] AUTODETECT spr round 1 (radius: 5) [01:28:21 -107810.572023] AUTODETECT spr round 2 (radius: 10) [01:30:45 -78030.734206] AUTODETECT spr round 3 (radius: 15) [01:33:19 -62083.616823] AUTODETECT spr round 4 (radius: 20) [01:35:56 -52513.508305] AUTODETECT spr round 5 (radius: 25) [01:38:55 -48245.083025] SPR radius for FAST iterations: 25 (autodetect) [01:38:55 -48245.083025] Model parameter optimization (eps = 3.000000) [01:39:14 -48227.846333] FAST spr round 1 (radius: 25) [01:41:51 -38663.150200] FAST spr round 2 (radius: 25) [01:44:09 -37547.024062] FAST spr round 3 (radius: 25) [01:46:10 -36669.658373] FAST spr round 4 (radius: 25) [01:47:56 -36562.510939] FAST spr round 5 (radius: 25) [01:48:33] [worker #2] ML tree search #3, logLikelihood: -36560.320075 [01:49:35 -36555.838779] FAST spr round 6 (radius: 25) [01:51:09 -36555.838272] Model parameter optimization (eps = 1.000000) [01:51:25 -36553.175586] SLOW spr round 1 (radius: 5) [01:53:09 -36546.943622] SLOW spr round 2 (radius: 5) [01:54:54 -36545.520985] SLOW spr round 3 (radius: 5) [01:56:39 -36545.205112] SLOW spr round 4 (radius: 5) [01:58:22 -36545.204547] SLOW spr round 5 (radius: 10) [02:00:19 -36545.204205] SLOW spr round 6 (radius: 15) [02:03:16 -36545.203954] SLOW spr round 7 (radius: 20) [02:07:08 -36545.203712] SLOW spr round 8 (radius: 25) [02:12:07 -36545.203480] Model parameter optimization (eps = 0.100000) [02:12:09] [worker #0] ML tree search #4, logLikelihood: -36545.203288 [02:12:09 -205045.333607] Initial branch length optimization [02:12:12 -165442.011797] Model parameter optimization (eps = 10.000000) [02:12:45 -165007.996644] AUTODETECT spr round 1 (radius: 5) [02:15:02 -108758.452901] AUTODETECT spr round 2 (radius: 10) [02:17:25 -81358.366476] AUTODETECT spr round 3 (radius: 15) [02:19:58 -63732.459257] AUTODETECT spr round 4 (radius: 20) [02:22:57 -48106.398983] AUTODETECT spr round 5 (radius: 25) [02:26:01 -43413.798978] SPR radius for FAST iterations: 25 (autodetect) [02:26:01 -43413.798978] Model parameter optimization (eps = 3.000000) [02:26:19 -43399.818181] FAST spr round 1 (radius: 25) [02:26:45] [worker #1] ML tree search #5, logLikelihood: -36696.257340 [02:28:52 -37040.351193] FAST spr round 2 (radius: 25) [02:30:57 -36609.429182] FAST spr round 3 (radius: 25) [02:32:46 -36581.872083] FAST spr round 4 (radius: 25) [02:34:24 -36579.127326] FAST spr round 5 (radius: 25) [02:35:59 -36579.126588] Model parameter optimization (eps = 1.000000) [02:36:11 -36577.077002] SLOW spr round 1 (radius: 5) [02:37:56 -36561.832328] SLOW spr round 2 (radius: 5) [02:39:43 -36558.794425] SLOW spr round 3 (radius: 5) [02:41:30 -36555.778661] SLOW spr round 4 (radius: 5) [02:43:18 -36555.776607] SLOW spr round 5 (radius: 10) [02:45:14 -36555.776128] SLOW spr round 6 (radius: 15) [02:48:09 -36555.775881] SLOW spr round 7 (radius: 20) [02:52:00 -36555.775689] SLOW spr round 8 (radius: 25) [02:56:46 -36555.705509] Model parameter optimization (eps = 0.100000) [02:56:51] [worker #0] ML tree search #7, logLikelihood: -36555.675183 [02:56:51 -204843.060724] Initial branch length optimization [02:56:55 -165660.688780] Model parameter optimization (eps = 10.000000) [02:57:26 -165282.572364] AUTODETECT spr round 1 (radius: 5) [02:59:43 -108990.022295] AUTODETECT spr round 2 (radius: 10) [03:02:06 -78321.941249] AUTODETECT spr round 3 (radius: 15) [03:04:35 -61810.448855] AUTODETECT spr round 4 (radius: 20) [03:07:18 -52556.332953] AUTODETECT spr round 5 (radius: 25) [03:08:22] [worker #2] ML tree search #6, logLikelihood: -36544.715835 [03:11:05 -47629.396668] SPR radius for FAST iterations: 25 (autodetect) [03:11:05 -47629.396668] Model parameter optimization (eps = 3.000000) [03:11:21 -47614.534833] FAST spr round 1 (radius: 25) [03:14:03 -38244.512868] FAST spr round 2 (radius: 25) [03:16:12 -37396.211325] FAST spr round 3 (radius: 25) [03:18:09 -36690.584670] FAST spr round 4 (radius: 25) [03:19:53 -36628.555930] FAST spr round 5 (radius: 25) [03:21:27 -36625.111008] FAST spr round 6 (radius: 25) [03:23:00 -36622.847837] FAST spr round 7 (radius: 25) [03:24:32 -36622.847569] Model parameter optimization (eps = 1.000000) [03:24:45 -36620.723407] SLOW spr round 1 (radius: 5) [03:26:31 -36615.787823] SLOW spr round 2 (radius: 5) [03:28:16 -36615.120775] SLOW spr round 3 (radius: 5) [03:30:01 -36612.503128] SLOW spr round 4 (radius: 5) [03:31:46 -36611.658214] SLOW spr round 5 (radius: 5) [03:33:31 -36611.205501] SLOW spr round 6 (radius: 5) [03:35:14 -36611.205415] SLOW spr round 7 (radius: 10) [03:37:07 -36611.205340] SLOW spr round 8 (radius: 15) [03:40:10 -36609.222388] SLOW spr round 9 (radius: 5) [03:42:24 -36608.285744] SLOW spr round 10 (radius: 5) [03:44:23 -36608.284985] SLOW spr round 11 (radius: 10) [03:46:27 -36605.145123] SLOW spr round 12 (radius: 5) [03:48:34 -36605.144486] SLOW spr round 13 (radius: 10) [03:50:41 -36605.144355] SLOW spr round 14 (radius: 15) [03:53:41 -36605.144252] SLOW spr round 15 (radius: 20) [03:58:09 -36605.144148] SLOW spr round 16 (radius: 25) [04:03:46 -36562.089608] SLOW spr round 17 (radius: 5) [04:06:02 -36561.557053] SLOW spr round 18 (radius: 5) [04:08:03 -36561.556562] SLOW spr round 19 (radius: 10) [04:09:27] [worker #1] ML tree search #8, logLikelihood: -36636.738807 [04:10:10 -36552.967813] SLOW spr round 20 (radius: 5) [04:12:16 -36552.965910] SLOW spr round 21 (radius: 10) [04:14:20 -36552.965792] SLOW spr round 22 (radius: 15) [04:17:22 -36549.654162] SLOW spr round 23 (radius: 5) [04:19:35 -36549.612488] SLOW spr round 24 (radius: 10) [04:21:49 -36549.611413] SLOW spr round 25 (radius: 15) [04:24:46 -36549.611154] SLOW spr round 26 (radius: 20) [04:29:11 -36549.611078] SLOW spr round 27 (radius: 25) [04:34:31 -36549.250725] SLOW spr round 28 (radius: 5) [04:36:48 -36549.250698] SLOW spr round 29 (radius: 10) [04:39:09 -36549.250682] SLOW spr round 30 (radius: 15) [04:42:06 -36549.250667] SLOW spr round 31 (radius: 20) [04:46:30 -36549.250651] SLOW spr round 32 (radius: 25) [04:49:29] [worker #2] ML tree search #9, logLikelihood: -36649.168938 [04:51:50 -36549.250635] Model parameter optimization (eps = 0.100000) [04:51:55] [worker #0] ML tree search #10, logLikelihood: -36549.211462 [04:51:55 -205132.078014] Initial branch length optimization [04:51:58 -165844.536402] Model parameter optimization (eps = 10.000000) [04:52:30 -165408.004585] AUTODETECT spr round 1 (radius: 5) [04:54:47 -107009.494713] AUTODETECT spr round 2 (radius: 10) [04:57:10 -77350.955698] AUTODETECT spr round 3 (radius: 15) [04:59:36 -67923.194806] AUTODETECT spr round 4 (radius: 20) [05:02:21 -54202.699876] AUTODETECT spr round 5 (radius: 25) [05:03:45] [worker #1] ML tree search #11, logLikelihood: -36547.020060 [05:05:31 -48628.464573] SPR radius for FAST iterations: 25 (autodetect) [05:05:31 -48628.464573] Model parameter optimization (eps = 3.000000) [05:05:50 -48608.546248] FAST spr round 1 (radius: 25) [05:08:32 -37505.794890] FAST spr round 2 (radius: 25) [05:10:42 -36714.185911] FAST spr round 3 (radius: 25) [05:12:35 -36629.119040] FAST spr round 4 (radius: 25) [05:14:17 -36621.291077] FAST spr round 5 (radius: 25) [05:15:52 -36620.569955] FAST spr round 6 (radius: 25) [05:17:25 -36620.568643] Model parameter optimization (eps = 1.000000) [05:17:43 -36614.839693] SLOW spr round 1 (radius: 5) [05:19:28 -36604.043534] SLOW spr round 2 (radius: 5) [05:21:16 -36596.795199] SLOW spr round 3 (radius: 5) [05:23:03 -36596.794752] SLOW spr round 4 (radius: 10) [05:25:02 -36595.399067] SLOW spr round 5 (radius: 5) [05:27:13 -36593.798872] SLOW spr round 6 (radius: 5) [05:29:14 -36593.798828] SLOW spr round 7 (radius: 10) [05:31:20 -36593.798744] SLOW spr round 8 (radius: 15) [05:34:10 -36593.357599] SLOW spr round 9 (radius: 5) [05:36:29 -36593.271561] SLOW spr round 10 (radius: 10) [05:38:40 -36593.271395] SLOW spr round 11 (radius: 15) [05:41:26 -36593.271374] SLOW spr round 12 (radius: 20) [05:45:12 -36592.325789] SLOW spr round 13 (radius: 5) [05:47:30 -36592.325744] SLOW spr round 14 (radius: 10) [05:49:43 -36592.325742] SLOW spr round 15 (radius: 15) [05:52:26 -36592.325739] SLOW spr round 16 (radius: 20) [05:56:11 -36592.325739] SLOW spr round 17 (radius: 25) [06:01:02 -36592.325738] Model parameter optimization (eps = 0.100000) [06:01:12] [worker #0] ML tree search #13, logLikelihood: -36591.385174 [06:01:12 -206101.283151] Initial branch length optimization [06:01:16 -166573.693320] Model parameter optimization (eps = 10.000000) [06:01:46 -166101.425804] AUTODETECT spr round 1 (radius: 5) [06:04:06 -110563.023559] AUTODETECT spr round 2 (radius: 10) [06:06:03] [worker #2] ML tree search #12, logLikelihood: -36543.205152 [06:06:32 -75860.005498] AUTODETECT spr round 3 (radius: 15) [06:09:07 -61081.611603] AUTODETECT spr round 4 (radius: 20) [06:12:01 -53670.199135] AUTODETECT spr round 5 (radius: 25) [06:15:34 -47498.917354] SPR radius for FAST iterations: 25 (autodetect) [06:15:34 -47498.917354] Model parameter optimization (eps = 3.000000) [06:15:49 -47467.162878] FAST spr round 1 (radius: 25) [06:18:28 -38051.738494] FAST spr round 2 (radius: 25) [06:20:38 -37274.540252] FAST spr round 3 (radius: 25) [06:22:29 -37234.451286] FAST spr round 4 (radius: 25) [06:24:18 -36702.416127] FAST spr round 5 (radius: 25) [06:26:01 -36612.695179] FAST spr round 6 (radius: 25) [06:27:39 -36601.968991] FAST spr round 7 (radius: 25) [06:29:13 -36601.913929] Model parameter optimization (eps = 1.000000) [06:29:30 -36595.514002] SLOW spr round 1 (radius: 5) [06:31:18 -36589.295946] SLOW spr round 2 (radius: 5) [06:33:04 -36588.805001] SLOW spr round 3 (radius: 5) [06:34:51 -36585.826871] SLOW spr round 4 (radius: 5) [06:36:36 -36585.825915] SLOW spr round 5 (radius: 10) [06:38:27 -36585.825697] SLOW spr round 6 (radius: 15) [06:41:16 -36582.115589] SLOW spr round 7 (radius: 5) [06:43:30 -36581.226636] SLOW spr round 8 (radius: 5) [06:45:33 -36577.391537] SLOW spr round 9 (radius: 5) [06:47:29 -36575.422799] SLOW spr round 10 (radius: 5) [06:49:17 -36575.422005] SLOW spr round 11 (radius: 10) [06:51:09 -36575.421984] SLOW spr round 12 (radius: 15) [06:53:55 -36572.409306] SLOW spr round 13 (radius: 5) [06:56:14 -36564.112780] SLOW spr round 14 (radius: 5) [06:58:15 -36562.907724] SLOW spr round 15 (radius: 5) [07:00:09 -36562.630836] SLOW spr round 16 (radius: 5) [07:01:57 -36562.630172] SLOW spr round 17 (radius: 10) [07:03:50 -36562.630105] SLOW spr round 18 (radius: 15) [07:06:36 -36562.630092] SLOW spr round 19 (radius: 20) [07:10:12 -36560.004803] SLOW spr round 20 (radius: 5) [07:12:29 -36559.875922] SLOW spr round 21 (radius: 5) [07:14:31 -36559.875867] SLOW spr round 22 (radius: 10) [07:16:34 -36559.686382] SLOW spr round 23 (radius: 5) [07:18:40 -36559.685384] SLOW spr round 24 (radius: 10) [07:19:31] [worker #1] ML tree search #14, logLikelihood: -36530.115280 [07:20:45 -36559.685351] SLOW spr round 25 (radius: 15) [07:20:46] [worker #2] ML tree search #15, logLikelihood: -36814.246957 [07:23:30 -36559.685350] SLOW spr round 26 (radius: 20) [07:27:11 -36559.685350] SLOW spr round 27 (radius: 25) [07:31:49 -36559.685350] Model parameter optimization (eps = 0.100000) [07:31:54] [worker #0] ML tree search #16, logLikelihood: -36559.618937 [07:31:54 -206115.232879] Initial branch length optimization [07:31:57 -167132.713295] Model parameter optimization (eps = 10.000000) [07:32:27 -166649.221663] AUTODETECT spr round 1 (radius: 5) [07:34:45 -106785.723166] AUTODETECT spr round 2 (radius: 10) [07:37:11 -78078.511765] AUTODETECT spr round 3 (radius: 15) [07:39:48 -63234.355135] AUTODETECT spr round 4 (radius: 20) [07:42:36 -56361.020845] AUTODETECT spr round 5 (radius: 25) [07:46:09 -48096.368910] SPR radius for FAST iterations: 25 (autodetect) [07:46:09 -48096.368910] Model parameter optimization (eps = 3.000000) [07:46:31 -48047.338455] FAST spr round 1 (radius: 25) [07:49:26 -38600.390723] FAST spr round 2 (radius: 25) [07:51:38 -36999.980284] FAST spr round 3 (radius: 25) [07:53:27 -36907.493726] FAST spr round 4 (radius: 25) [07:55:10 -36684.650294] FAST spr round 5 (radius: 25) [07:56:51 -36675.361658] FAST spr round 6 (radius: 25) [07:58:28 -36675.361327] Model parameter optimization (eps = 1.000000) [07:58:42 -36669.283262] SLOW spr round 1 (radius: 5) [08:00:28 -36659.596880] SLOW spr round 2 (radius: 5) [08:02:15 -36658.414497] SLOW spr round 3 (radius: 5) [08:04:02 -36658.393221] SLOW spr round 4 (radius: 10) [08:06:00 -36656.102707] SLOW spr round 5 (radius: 5) [08:08:12 -36652.998833] SLOW spr round 6 (radius: 5) [08:10:13 -36643.678510] SLOW spr round 7 (radius: 5) [08:12:07 -36643.518418] SLOW spr round 8 (radius: 5) [08:13:54 -36643.518205] SLOW spr round 9 (radius: 10) [08:15:49 -36642.978927] SLOW spr round 10 (radius: 5) [08:17:56 -36642.977354] SLOW spr round 11 (radius: 10) [08:20:03 -36642.977051] SLOW spr round 12 (radius: 15) [08:23:01 -36642.976831] SLOW spr round 13 (radius: 20) [08:25:52] [worker #1] ML tree search #17, logLikelihood: -36532.444068 [08:27:06 -36642.359346] SLOW spr round 14 (radius: 5) [08:29:23 -36642.072029] SLOW spr round 15 (radius: 5) [08:31:23 -36642.071951] SLOW spr round 16 (radius: 10) [08:33:25 -36642.071940] SLOW spr round 17 (radius: 15) [08:36:22 -36642.071930] SLOW spr round 18 (radius: 20) [08:40:23 -36642.071930] SLOW spr round 19 (radius: 25) [08:45:37 -36637.977819] SLOW spr round 20 (radius: 5) [08:47:56 -36637.976974] SLOW spr round 21 (radius: 10) [08:50:20 -36637.976962] SLOW spr round 22 (radius: 15) [08:53:19 -36631.024641] SLOW spr round 23 (radius: 5) [08:55:33 -36628.199859] SLOW spr round 24 (radius: 5) [08:57:32 -36628.199731] SLOW spr round 25 (radius: 10) [08:59:35 -36628.199716] SLOW spr round 26 (radius: 15) [09:00:04] [worker #2] ML tree search #18, logLikelihood: -36564.769553 [09:02:34 -36628.199701] SLOW spr round 27 (radius: 20) [09:06:37 -36628.199685] SLOW spr round 28 (radius: 25) [09:11:51 -36628.199668] Model parameter optimization (eps = 0.100000) [09:11:57] [worker #0] ML tree search #19, logLikelihood: -36628.186936 [09:47:39] [worker #1] ML tree search #20, logLikelihood: -36558.670946 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.176454,0.246021) (0.115835,0.292563) (0.508294,0.951678) (0.199417,2.201253) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -36530.115280 AIC score: 77070.230560 / AICc score: 8121130.230560 / BIC score: 82740.999603 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=125). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 241 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P25490/3_mltree/P25490.raxml.log Analysis started: 05-Jul-2021 17:27:43 / finished: 06-Jul-2021 03:15:23 Elapsed time: 35259.592 seconds