RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 15:05:39 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/2_msa/P23415_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/3_mltree/P23415.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622635539 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/2_msa/P23415_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 457 sites WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and sp_Q08832_GBRB3_DROME_7227 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_H0YT70_H0YT70_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_U3KGE9_U3KGE9_FICAL_59894 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A0Q3URZ9_A0A0Q3URZ9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091ET31_A0A091ET31_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091KGB3_A0A091KGB3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A093PT27_A0A093PT27_9PASS_328815 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A087REJ5_A0A087REJ5_APTFO_9233 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091GA53_A0A091GA53_9AVES_55661 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A0A0A4Y2_A0A0A0A4Y2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A2I0MA70_A0A2I0MA70_COLLI_8932 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091IB21_A0A091IB21_CALAN_9244 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A1V4KUZ7_A0A1V4KUZ7_PATFA_372326 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A218V2U1_A0A218V2U1_9PASE_299123 are exactly identical! WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and sp_P15431_GBRB1_RAT_10116 are exactly identical! WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A1U7R4F3_A0A1U7R4F3_MESAU_10036 are exactly identical! WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and sp_P63079_GBRB3_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XNI6_M3XNI6_MUSPF_9669 and tr_A0A2Y9L648_A0A2Y9L648_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_E2QZJ3_E2QZJ3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_F7E7T3_F7E7T3_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_G7Q291_G7Q291_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_A0A2I2UMS4_A0A2I2UMS4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_A0A096NBC6_A0A096NBC6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_A0A0D9RR79_A0A0D9RR79_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_A0A2K6CUC7_A0A2K6CUC7_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XU22_M3XU22_MUSPF_9669 and tr_A0A2Y9KM13_A0A2Y9KM13_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 and tr_G1L9J8_G1L9J8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 and tr_A0A2U3VMT7_A0A2U3VMT7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 and tr_A0A2Y9JQ35_A0A2Y9JQ35_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y311_M3Y311_MUSPF_9669 and tr_E2QS67_E2QS67_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y311_M3Y311_MUSPF_9669 and tr_I3M6J7_I3M6J7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y311_M3Y311_MUSPF_9669 and tr_M3X383_M3X383_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y311_M3Y311_MUSPF_9669 and tr_A0A2U3VHJ9_A0A2U3VHJ9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y311_M3Y311_MUSPF_9669 and tr_A0A2Y9KQG3_A0A2Y9KQG3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3GR43_A0A2I3GR43_NOMLE_61853 and tr_A0A2I2ZB89_A0A2I2ZB89_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GR43_A0A2I3GR43_NOMLE_61853 and tr_A0A2I3TSA1_A0A2I3TSA1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GR43_A0A2I3GR43_NOMLE_61853 and tr_A0A2K5MLZ3_A0A2K5MLZ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GR43_A0A2I3GR43_NOMLE_61853 and tr_A0A2R9AUZ5_A0A2R9AUZ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QX18_G1QX18_NOMLE_61853 and tr_H2PHA0_H2PHA0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QX18_G1QX18_NOMLE_61853 and tr_H2QRY3_H2QRY3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QX18_G1QX18_NOMLE_61853 and sp_Q16445_GBRA6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_G3S3Z3_G3S3Z3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A2I3S4U2_A0A2I3S4U2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and sp_P48167_GLRB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_G7P6H0_G7P6H0_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A096MPS0_A0A096MPS0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A0D9S1R1_A0A0D9S1R1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A2K5N5U1_A0A2K5N5U1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A2K6CAM8_A0A2K6CAM8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A2K5XRG3_A0A2K5XRG3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R388_G1R388_NOMLE_61853 and tr_A0A2R8ZFL2_A0A2R8ZFL2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Y215_A0A2I2Y215_GORGO_9595 and tr_A0A2I3T0F6_A0A2I3T0F6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QU31_G3QU31_GORGO_9595 and tr_H2PES7_H2PES7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QU31_G3QU31_GORGO_9595 and tr_H2QQG1_H2QQG1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QU31_G3QU31_GORGO_9595 and sp_O75311_GLRA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QU31_G3QU31_GORGO_9595 and tr_G7P6K5_G7P6K5_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QU31_G3QU31_GORGO_9595 and tr_A0A2K5LG11_A0A2K5LG11_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QU31_G3QU31_GORGO_9595 and tr_A0A2K5XCQ4_A0A2K5XCQ4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3REP2_G3REP2_GORGO_9595 and sp_P23415_GLRA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3REP2_G3REP2_GORGO_9595 and tr_A0A2R9CBB5_A0A2R9CBB5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and tr_H2PD83_H2PD83_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and tr_H2QPE8_H2QPE8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and sp_P18505_GBRB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and tr_A0A2R9C4H8_A0A2R9C4H8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_G1SYK7_G1SYK7_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_I2BJM7_I2BJM7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and sp_P63138_GBRB2_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_H0VSU8_H0VSU8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_F7DAV1_F7DAV1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_A0A287BG52_A0A287BG52_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_A0A0D9RD87_A0A0D9RD87_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 and tr_A0A1U7QE51_A0A1U7QE51_MESAU_10036 are exactly identical! WARNING: Sequences tr_E2R7P3_E2R7P3_CANLF_9615 and tr_M3WWT8_M3WWT8_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_F7GTN8_F7GTN8_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_G7P8R5_G7P8R5_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_A0A2I3MZA7_A0A2I3MZA7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_A0A0D9REP3_A0A0D9REP3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_A0A2K5MSW4_A0A2K5MSW4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_A0A2K6CE69_A0A2K6CE69_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1PC16_F1PC16_CANLF_9615 and tr_A0A2K5ZIK9_A0A2K5ZIK9_MANLE_9568 are exactly identical! WARNING: Sequences tr_L7N0C0_L7N0C0_CANLF_9615 and tr_A0A2U3VC36_A0A2U3VC36_ODORO_9708 are exactly identical! WARNING: Sequences tr_L7N0C0_L7N0C0_CANLF_9615 and tr_A0A2Y9IKP5_A0A2Y9IKP5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_L7N0C0_L7N0C0_CANLF_9615 and tr_A0A384C705_A0A384C705_URSMA_29073 are exactly identical! WARNING: Sequences tr_F7EBG0_F7EBG0_MONDO_13616 and tr_G3VMU6_G3VMU6_SARHA_9305 are exactly identical! WARNING: Sequences tr_I3M311_I3M311_ICTTR_43179 and tr_F6PRK6_F6PRK6_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5RL15_A0A1D5RL15_MACMU_9544 and tr_G7P6T6_G7P6T6_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5RL15_A0A1D5RL15_MACMU_9544 and tr_A0A096ND56_A0A096ND56_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5RL15_A0A1D5RL15_MACMU_9544 and tr_A0A2K6DWB6_A0A2K6DWB6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6ZKJ4_F6ZKJ4_MACMU_9544 and tr_A0A2I3MM58_A0A2I3MM58_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6ZKJ4_F6ZKJ4_MACMU_9544 and tr_A0A2K5MKL8_A0A2K5MKL8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6ZKJ4_F6ZKJ4_MACMU_9544 and tr_A0A2K6CDS1_A0A2K6CDS1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7DY55_F7DY55_MACMU_9544 and tr_A0A2I3NFP6_A0A2I3NFP6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H0YR55_H0YR55_TAEGU_59729 and tr_A0A218V1I1_A0A218V1I1_9PASE_299123 are exactly identical! WARNING: Sequences tr_E3N9A7_E3N9A7_CAERE_31234 and tr_A8XPC7_A8XPC7_CAEBR_6238 are exactly identical! WARNING: Sequences tr_D2GUJ9_D2GUJ9_AILME_9646 and tr_A0A384C738_A0A384C738_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LIA4_G1LIA4_AILME_9646 and tr_A0A384CID7_A0A384CID7_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LMJ3_G1LMJ3_AILME_9646 and tr_A0A384C764_A0A384C764_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7P5I7_G7P5I7_MACFA_9541 and tr_A0A2K6BII0_A0A2K6BII0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MTC5_A0A096MTC5_PAPAN_9555 and tr_A0A0D9RX39_A0A0D9RX39_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096MTC5_A0A096MTC5_PAPAN_9555 and tr_A0A2K5M2W3_A0A2K5M2W3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151N0B3_A0A151N0B3_ALLMI_8496 and tr_A0A1U7RZA5_A0A1U7RZA5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NMP9_A0A151NMP9_ALLMI_8496 and tr_A0A1U7RXI3_A0A1U7RXI3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F951_A0A091F951_CORBR_85066 and tr_A0A218UGY9_A0A218UGY9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A091IKC1_A0A091IKC1_EGRGA_188379 and tr_A0A093PQ03_A0A093PQ03_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091IKC1_A0A091IKC1_EGRGA_188379 and tr_A0A087REV5_A0A087REV5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IKC1_A0A091IKC1_EGRGA_188379 and tr_A0A0A0AZG9_A0A0A0AZG9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J2I5_A0A091J2I5_EGRGA_188379 and tr_A0A091VZP7_A0A091VZP7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J2I5_A0A091J2I5_EGRGA_188379 and tr_A0A091GCP7_A0A091GCP7_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J2I5_A0A091J2I5_EGRGA_188379 and tr_A0A0A0B211_A0A0A0B211_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J6C2_A0A091J6C2_EGRGA_188379 and tr_A0A091UPY1_A0A091UPY1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A2I0LU25_A0A2I0LU25_COLLI_8932 and tr_A0A1V4JT15_A0A1V4JT15_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M4S5_A0A2I0M4S5_COLLI_8932 and tr_A0A1V4KYT3_A0A1V4KYT3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0ML15_A0A2I0ML15_COLLI_8932 and tr_A0A1V4JC38_A0A1V4JC38_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3R4Z7_A0A1S3R4Z7_SALSA_8030 and tr_A0A060VT12_A0A060VT12_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0RHW6_A0A2D0RHW6_ICTPU_7998 and tr_A0A2D0RHX1_A0A2D0RHX1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2Y9MNI4_A0A2Y9MNI4_DELLE_9749 and tr_A0A2Y9THJ9_A0A2Y9THJ9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9FB02_A0A2Y9FB02_PHYCD_9755 and tr_A0A384A410_A0A384A410_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 117 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415.raxml.reduced.phy Alignment comprises 1 partitions and 457 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 457 Gaps: 13.38 % Invariant sites: 0.88 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/3_mltree/P23415.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 115 / 9200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -118061.587647 [00:00:00 -118061.587647] Initial branch length optimization [00:00:01 -117395.483512] Model parameter optimization (eps = 0.100000) [00:01:51] Tree #1, final logLikelihood: -116900.559597 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.215818,0.208525) (0.248612,0.281887) (0.320583,0.919797) (0.214986,2.744568) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P23415/4_raxmlng_ancestral/P23415.raxml.log Analysis started: 02-Jun-2021 15:05:39 / finished: 02-Jun-2021 15:07:35 Elapsed time: 115.965 seconds