RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 23:44:10 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/2_msa/P20930_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/3_mltree/P20930.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622666650 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/2_msa/P20930_nogap_msa.fasta [00:00:00] Loaded alignment with 766 taxa and 4061 sites WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A2I0LLS9_A0A2I0LLS9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A1V4JZG4_A0A1V4JZG4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A226MEW3_A0A226MEW3_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A226NI21_A0A226NI21_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C251_E1C251_CHICK_9031 and tr_G1MRY2_G1MRY2_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C251_E1C251_CHICK_9031 and tr_A0A226N1K0_A0A226N1K0_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C251_E1C251_CHICK_9031 and tr_A0A226P850_A0A226P850_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3XWM9_M3XWM9_MUSPF_9669 and tr_M3Z512_M3Z512_MUSPF_9669 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_W5NRD4_W5NRD4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_I3LX39_I3LX39_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A286XNC8_A0A286XNC8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and sp_P02639_S10A1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_M3XA34_M3XA34_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2U3W4T9_A0A2U3W4T9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2U3YWQ1_A0A2U3YWQ1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2Y9IHF9_A0A2Y9IHF9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2Y9MD03_A0A2Y9MD03_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2Y9FVI4_A0A2Y9FVI4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A383ZU35_A0A383ZU35_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1RH69_G1RH69_NOMLE_61853 and tr_G1SAS4_G1SAS4_NOMLE_61853 are exactly identical! WARNING: Sequences tr_G1RH69_G1RH69_NOMLE_61853 and tr_G3R007_G3R007_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RH69_G1RH69_NOMLE_61853 and tr_H2N5T5_H2N5T5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RH69_G1RH69_NOMLE_61853 and tr_H2Q002_H2Q002_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RH69_G1RH69_NOMLE_61853 and sp_P31949_S10AB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RH69_G1RH69_NOMLE_61853 and tr_A0A2R9ABV3_A0A2R9ABV3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_G3RL51_G3RL51_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_I6L539_I6L539_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and sp_Q5RC36_S10A1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_H2Q035_H2Q035_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and sp_P23297_S10A1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_F7HGE0_F7HGE0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_F6QF56_F6QF56_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_G7NUH2_G7NUH2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A096NYU6_A0A096NYU6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A0D9S5N2_A0A0D9S5N2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2K5NH83_A0A2K5NH83_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2K6DJR8_A0A2K6DJR8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2K5Y2G8_A0A2K5Y2G8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2R9BUH5_A0A2R9BUH5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1Q9C5_G1Q9C5_MYOLU_59463 and tr_A0A1U7T1U2_A0A1U7T1U2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3H328_G3H328_CRIGR_10029 and tr_A0A1U7Q6F1_A0A1U7Q6F1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3HC24_G3HC24_CRIGR_10029 and tr_A0A1U7R3I4_A0A1U7R3I4_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QEY7_G3QEY7_GORGO_9595 and sp_P06702_S10A9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SGV1_G3SGV1_GORGO_9595 and tr_H2QP64_H2QP64_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SGV1_G3SGV1_GORGO_9595 and tr_A0A2R8ZMX9_A0A2R8ZMX9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and sp_Q6YNR6_S100B_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_F6RF49_F6RF49_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and sp_P04271_S100B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_G1L2S1_G1L2S1_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A2I2UW07_A0A2I2UW07_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A2Y9FKI7_A0A2Y9FKI7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A384DNP5_A0A384DNP5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A383ZCB7_A0A383ZCB7_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and sp_P25815_S100P_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_F6PWQ7_F6PWQ7_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A096NZC3_A0A096NZC3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A0D9RU76_A0A0D9RU76_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A2K5NID4_A0A2K5NID4_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A2K6DNK8_A0A2K6DNK8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A2K5XH25_A0A2K5XH25_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0A0MQQ2_A0A0A0MQQ2_RABIT_9986 and sp_O77791_S10AC_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1SNE8_G1SNE8_RABIT_9986 and sp_P24480_S10AB_RABIT_9986 are exactly identical! WARNING: Sequences tr_H2Q026_H2Q026_PANTR_9598 and tr_A0A2R9A6I5_A0A2R9A6I5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2Q027_H2Q027_PANTR_9598 and tr_A0A2R9A4Q5_A0A2R9A4Q5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R5N0_H2R5N0_PANTR_9598 and tr_A0A2R9BU51_A0A2R9BU51_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_G7PWM2_G7PWM2_MACFA_9541 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A0D9R407_A0A0D9R407_CHLSB_60711 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2U3VAA5_A0A2U3VAA5_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2U3X2C1_A0A2U3X2C1_ODORO_9708 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2U3Z3M3_A0A2U3Z3M3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2Y9Q578_A0A2Y9Q578_DELLE_9749 are exactly identical! WARNING: Sequences tr_I3MDN4_I3MDN4_ICTTR_43179 and tr_A0A286XTU0_A0A286XTU0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H0XWA5_H0XWA5_OTOGA_30611 and tr_H0Y266_H0Y266_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F6UGT9_F6UGT9_MACMU_9544 and tr_A0A2K6D0T5_A0A2K6D0T5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F8G8_F7F8G8_MACMU_9544 and tr_A0A2K5NJQ1_A0A2K5NJQ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7F8G8_F7F8G8_MACMU_9544 and tr_A0A2K6C944_A0A2K6C944_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F8G8_F7F8G8_MACMU_9544 and tr_A0A2K5XNG3_A0A2K5XNG3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GN53_F7GN53_MACMU_9544 and tr_A0A096MUP9_A0A096MUP9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GN53_F7GN53_MACMU_9544 and tr_A0A2K5M0U1_A0A2K5M0U1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GN53_F7GN53_MACMU_9544 and tr_A0A2K6C2U1_A0A2K6C2U1_MACNE_9545 are exactly identical! WARNING: Sequences tr_B5FXV2_B5FXV2_TAEGU_59729 and tr_U3KFS2_U3KFS2_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A2R8MRR7_A0A2R8MRR7_CALJA_9483 and tr_A0A2R8MW64_A0A2R8MW64_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2R8MRR7_A0A2R8MRR7_CALJA_9483 and tr_F7DD73_F7DD73_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A087XWS7_A0A087XWS7_POEFO_48698 and tr_A0A087Y6V2_A0A087Y6V2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A091ILC5_A0A091ILC5_EGRGA_188379 and tr_A0A091VLU4_A0A091VLU4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091ILC5_A0A091ILC5_EGRGA_188379 and tr_A0A087QP91_A0A087QP91_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A087R9H8_A0A087R9H8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A091V676_A0A091V676_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A2I0LXI2_A0A2I0LXI2_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A1V4L055_A0A1V4L055_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M190_A0A2I0M190_COLLI_8932 and tr_A0A1V4L1H1_A0A1V4L1H1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3RWW0_A0A1S3RWW0_SALSA_8030 and tr_A0A060WZ60_A0A060WZ60_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0QYR7_A0A2D0QYR7_ICTPU_7998 and tr_A0A2D0QYS7_A0A2D0QYS7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S3N2_A0A2D0S3N2_ICTPU_7998 and tr_A0A2D0S574_A0A2D0S574_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZ10_A0A2D0SZ10_ICTPU_7998 and tr_A0A2D0SZ13_A0A2D0SZ13_ICTPU_7998 are exactly identical! WARNING: Duplicate sequences found: 95 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930.raxml.reduced.phy Alignment comprises 1 partitions and 4061 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 4061 Gaps: 92.55 % Invariant sites: 38.04 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/3_mltree/P20930.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 1016 / 81280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -294279.441822 [00:00:01 -294279.441822] Initial branch length optimization [00:00:08 -246498.480177] Model parameter optimization (eps = 0.100000) [00:05:57] Tree #1, final logLikelihood: -244510.790329 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.068841,0.506561) (0.012336,0.207038) (0.230411,0.642471) (0.688412,1.183218) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P20930/4_raxmlng_ancestral/P20930.raxml.log Analysis started: 02-Jun-2021 23:44:10 / finished: 02-Jun-2021 23:50:35 Elapsed time: 384.978 seconds