RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:07:51 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/2_msa/P16520_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/3_mltree/P16520.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646471 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/2_msa/P16520_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 340 sites WARNING: Sequences tr_B4R5I9_B4R5I9_DROSI_7240 and sp_P26308_GBB1_DROME_7227 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_G1MU86_G1MU86_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_K7G2T1_K7G2T1_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_H0ZK99_H0ZK99_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_U3K127_U3K127_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_U3IXP6_U3IXP6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A151M6J3_A0A151M6J3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A091EDS1_A0A091EDS1_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A091JFS3_A0A091JFS3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A093SF74_A0A093SF74_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A091WXD3_A0A091WXD3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A099Z3I9_A0A099Z3I9_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A0A0A2B5_A0A0A0A2B5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A2I0MBA5_A0A2I0MBA5_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A093GRL1_A0A093GRL1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A3Q0G149_A0A3Q0G149_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1BW98_E1BW98_CHICK_9031 and tr_A0A226PQW7_A0A226PQW7_COLVI_9014 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G1QGZ6_G1QGZ6_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G1P1G1_G1P1G1_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G3QVA4_G3QVA4_GORGO_9595 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2J8URB0_A0A2J8URB0_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G1SYI2_G1SYI2_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and sp_P62872_GBB1_CANLF_9615 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_K7CIH8_K7CIH8_PANTR_9598 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and sp_P54311_GBB1_RAT_10116 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_I3MFN1_I3MFN1_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_H0WQN1_H0WQN1_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A9LS48_A9LS48_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and sp_P62873_GBB1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_F7FXA9_F7FXA9_MACMU_9544 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G3TGH1_G3TGH1_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_I3LSK5_I3LSK5_PIG_9823 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G1M4Q5_G1M4Q5_AILME_9646 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_G7NWS9_G7NWS9_MACFA_9541 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and sp_P62871_GBB1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_M3WU86_M3WU86_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A096N6G8_A0A096N6G8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A0D9S8W7_A0A0D9S8W7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A1S3A594_A0A1S3A594_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A1S3GQ74_A0A1S3GQ74_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A3Q0CGB1_A0A3Q0CGB1_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2K5KQQ3_A0A2K5KQQ3_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2K6CP44_A0A2K6CP44_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2K5YX43_A0A2K5YX43_MANLE_9568 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2R9BKA7_A0A2R9BKA7_PANPA_9597 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2U3WFI7_A0A2U3WFI7_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2Y9RJ78_A0A2Y9RJ78_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A2Y9KA58_A0A2Y9KA58_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62874_GBB1_MOUSE_10090 and tr_A0A384DS01_A0A384DS01_URSMA_29073 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_G3QSP3_G3QSP3_GORGO_9595 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_G1TLE4_G1TLE4_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_F6WQ61_F6WQ61_HORSE_9796 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and sp_P54313_GBB2_RAT_10116 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_H0XCM3_H0XCM3_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_H0VZ49_H0VZ49_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and sp_P62879_GBB2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_G5BBZ6_G5BBZ6_HETGA_10181 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_G3TI13_G3TI13_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_F2Z4Z8_F2Z4Z8_PIG_9823 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and sp_P11017_GBB2_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_M3X5T9_M3X5T9_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A096P0C2_A0A096P0C2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A091DXM5_A0A091DXM5_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A0D9RZB5_A0A0D9RZB5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A1S3WQZ2_A0A1S3WQZ2_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A1S3GGA1_A0A1S3GGA1_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A1U7QWC3_A0A1U7QWC3_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2K5N4I6_A0A2K5N4I6_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2K6BCJ6_A0A2K6BCJ6_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2K5Z7H0_A0A2K5Z7H0_MANLE_9568 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2R9A870_A0A2R9A870_PANPA_9597 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2U3VUN2_A0A2U3VUN2_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2U3XQS7_A0A2U3XQS7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2Y9E5X9_A0A2Y9E5X9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2Y9J5M1_A0A2Y9J5M1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2Y9PED7_A0A2Y9PED7_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A2Y9EX10_A0A2Y9EX10_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P62880_GBB2_MOUSE_10090 and tr_A0A384AH64_A0A384AH64_BALAS_310752 are exactly identical! WARNING: Sequences tr_E3XAX7_E3XAX7_ANODA_43151 and tr_W5JLL8_W5JLL8_ANODA_43151 are exactly identical! WARNING: Sequences tr_M3Z0J1_M3Z0J1_MUSPF_9669 and tr_E2R2S8_E2R2S8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z0J1_M3Z0J1_MUSPF_9669 and tr_G1LWF1_G1LWF1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z0J1_M3Z0J1_MUSPF_9669 and tr_M3WVB9_M3WVB9_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z0J1_M3Z0J1_MUSPF_9669 and tr_A0A2Y9JK59_A0A2Y9JK59_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q0TWX6_Q0TWX6_PHANO_321614 and tr_A0A163G9C9_A0A163G9C9_DIDRA_5454 are exactly identical! WARNING: Sequences tr_Q0TWX6_Q0TWX6_PHANO_321614 and tr_A0A178A871_A0A178A871_9PLEO_765868 are exactly identical! WARNING: Sequences tr_Q0TWX6_Q0TWX6_PHANO_321614 and tr_A0A178DRI8_A0A178DRI8_9PLEO_765867 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_H2QNS5_H2QNS5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_I3M5N1_I3M5N1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and sp_Q9HAV0_GBB4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_F6ZIZ9_F6ZIZ9_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A287A365_A0A287A365_PIG_9823 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_G7NZ30_G7NZ30_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A091DHS5_A0A091DHS5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A0D9RKN3_A0A0D9RKN3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A2K5KMI5_A0A2K5KMI5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A2K5XIL3_A0A2K5XIL3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A2R9CN27_A0A2R9CN27_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A2U4C8D2_A0A2U4C8D2_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A2Y9N2V3_A0A2Y9N2V3_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A2Y9SMX2_A0A2Y9SMX2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1R1B0_G1R1B0_NOMLE_61853 and tr_A0A384B6V0_A0A384B6V0_BALAS_310752 are exactly identical! WARNING: Sequences tr_J3K1W6_J3K1W6_COCIM_246410 and tr_E9D2J6_E9D2J6_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3K1W6_J3K1W6_COCIM_246410 and tr_A0A0J6YMD6_A0A0J6YMD6_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q9Q6_B6Q9Q6_TALMQ_441960 and tr_A0A093V244_A0A093V244_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_H2R3A6_H2R3A6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and sp_P16520_GBB3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_F7CTP1_F7CTP1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_G7PJN5_G7PJN5_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_A0A096N052_A0A096N052_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_A0A0D9RCX5_A0A0D9RCX5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_A0A2K6CRR6_A0A2K6CRR6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_A0A2K5XRZ4_A0A2K5XRZ4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QJH3_G3QJH3_GORGO_9595 and tr_A0A2R9CF71_A0A2R9CF71_PANPA_9597 are exactly identical! WARNING: Sequences tr_C0NFM9_C0NFM9_AJECG_447093 and tr_F0UDV1_F0UDV1_AJEC8_544711 are exactly identical! WARNING: Sequences tr_B8PE06_B8PE06_POSPM_561896 and tr_A0A1X6NEZ5_A0A1X6NEZ5_9APHY_670580 are exactly identical! WARNING: Sequences tr_F5HH30_F5HH30_NEUCR_367110 and tr_G4UP05_G4UP05_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B8NKS0_B8NKS0_ASPFN_332952 and tr_Q2U686_Q2U686_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NKS0_B8NKS0_ASPFN_332952 and tr_A0A1S9D8K7_A0A1S9D8K7_ASPOZ_5062 are exactly identical! WARNING: Sequences sp_P17343_GBB1_CAEEL_6239 and tr_G0NT72_G0NT72_CAEBE_135651 are exactly identical! WARNING: Sequences sp_P17343_GBB1_CAEEL_6239 and tr_E3LFW0_E3LFW0_CAERE_31234 are exactly identical! WARNING: Sequences sp_P17343_GBB1_CAEEL_6239 and sp_Q61ZF6_GBB1_CAEBR_6238 are exactly identical! WARNING: Sequences sp_P17343_GBB1_CAEEL_6239 and tr_A0A261C1G2_A0A261C1G2_9PELO_1503980 are exactly identical! WARNING: Sequences sp_P17343_GBB1_CAEEL_6239 and tr_A0A2G5V1L9_A0A2G5V1L9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A179UWJ4_A0A179UWJ4_BLAGS_559298 and tr_C5GLE5_C5GLE5_AJEDR_559297 are exactly identical! WARNING: Sequences tr_F6PVT7_F6PVT7_MONDO_13616 and tr_G3WGB1_G3WGB1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6Y3N2_F6Y3N2_MONDO_13616 and tr_G3W3Y2_G3W3Y2_SARHA_9305 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_W7N386_W7N386_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A0C4DHW2_A0A0C4DHW2_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_S0EG74_S0EG74_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_X0D6C9_X0D6C9_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A0N0DFM5_A0A0N0DFM5_FUSLA_179993 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_I1RJS2_I1RJS2_GIBZE_229533 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_Q96VA6_Q96VA6_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A2H3GUJ0_A0A2H3GUJ0_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A2K0WMJ0_A0A2K0WMJ0_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A2T4GUT5_A0A2T4GUT5_FUSCU_5516 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A2L2T4V0_A0A2L2T4V0_9HYPO_56646 are exactly identical! WARNING: Sequences tr_F9G7T7_F9G7T7_FUSOF_660025 and tr_A0A365NHV2_A0A365NHV2_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9ER21_E9ER21_METRA_655844 and tr_A0A0D9PCP9_A0A0D9PCP9_METAN_1291518 are exactly identical! WARNING: Sequences tr_E9ER21_E9ER21_METRA_655844 and tr_A0A167CBQ6_A0A167CBQ6_9HYPO_1081105 are exactly identical! WARNING: Sequences tr_J4KPB5_J4KPB5_BEAB2_655819 and tr_A0A0A2VA34_A0A0A2VA34_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4KPB5_J4KPB5_BEAB2_655819 and tr_A0A166XZP9_A0A166XZP9_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J4KPB5_J4KPB5_BEAB2_655819 and tr_A0A2N6NCA0_A0A2N6NCA0_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A3B5R5M2_A0A3B5R5M2_XIPMA_8083 and tr_A0A087YDR1_A0A087YDR1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AC83_M4AC83_XIPMA_8083 and tr_A0A087XNC4_A0A087XNC4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AY93_M4AY93_XIPMA_8083 and tr_A0A087X6P6_A0A087X6P6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0C4EJL2_A0A0C4EJL2_PUCT1_630390 and tr_E3K0E6_E3K0E6_PUCGT_418459 are exactly identical! WARNING: Sequences tr_A0A0K0J9V3_A0A0K0J9V3_BRUMA_6279 and tr_A0A0N4TLG9_A0A0N4TLG9_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A1DDX2_A1DDX2_NEOFI_331117 and tr_A0A0K8L4C5_A0A0K8L4C5_9EURO_91492 are exactly identical! WARNING: Sequences tr_A1DDX2_A1DDX2_NEOFI_331117 and tr_A0A0S7E0C6_A0A0S7E0C6_9EURO_293939 are exactly identical! WARNING: Sequences tr_A1DDX2_A1DDX2_NEOFI_331117 and tr_A0A2I1CIP2_A0A2I1CIP2_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A2RA66_A2RA66_ASPNC_425011 and tr_G7X9P4_G7X9P4_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2RA66_A2RA66_ASPNC_425011 and tr_G3YDM4_G3YDM4_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2RA66_A2RA66_ASPNC_425011 and tr_A0A117E2W1_A0A117E2W1_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2RA66_A2RA66_ASPNC_425011 and tr_A0A1L9NLC6_A0A1L9NLC6_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2RA66_A2RA66_ASPNC_425011 and tr_A0A1L9U9G7_A0A1L9U9G7_9EURO_767769 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V0S5L0_A0A0V0S5L0_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V1D6A1_A0A0V1D6A1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V0WNF8_A0A0V0WNF8_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V0VBK0_A0A0V0VBK0_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V1LCK2_A0A0V1LCK2_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V0ZNR3_A0A0V0ZNR3_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V1P270_A0A0V1P270_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S1K6_E5S1K6_TRISP_6334 and tr_A0A0V0UDL2_A0A0V0UDL2_9BILA_144512 are exactly identical! WARNING: Sequences tr_Q7Q6D3_Q7Q6D3_ANOGA_7165 and tr_Q16HK0_Q16HK0_AEDAE_7159 are exactly identical! WARNING: Sequences tr_G9N0B3_G9N0B3_HYPVG_413071 and tr_G0REH5_G0REH5_HYPJQ_431241 are exactly identical! WARNING: Sequences tr_G9N0B3_G9N0B3_HYPVG_413071 and tr_A0A0F9Y2E2_A0A0F9Y2E2_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9N0B3_G9N0B3_HYPVG_413071 and tr_A0A2T4B7G0_A0A2T4B7G0_9HYPO_58853 are exactly identical! WARNING: Sequences tr_G9N0B3_G9N0B3_HYPVG_413071 and tr_A0A2T3ZWH6_A0A2T3ZWH6_TRIHA_983964 are exactly identical! WARNING: Sequences tr_H1V5H0_H1V5H0_COLHI_759273 and tr_E3Q2I8_E3Q2I8_COLGM_645133 are exactly identical! WARNING: Sequences tr_H1V5H0_H1V5H0_COLHI_759273 and tr_A0A166TWI4_A0A166TWI4_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1V5H0_H1V5H0_COLHI_759273 and tr_A0A167BZC1_A0A167BZC1_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_K7FS67_K7FS67_PELSI_13735 and tr_U3K477_U3K477_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7FS67_K7FS67_PELSI_13735 and tr_U3IU93_U3IU93_ANAPL_8839 are exactly identical! WARNING: Sequences tr_K7FS67_K7FS67_PELSI_13735 and tr_A0A0Q3PHI1_A0A0Q3PHI1_AMAAE_12930 are exactly identical! WARNING: Sequences tr_K7FS67_K7FS67_PELSI_13735 and tr_A0A2I0M2Z5_A0A2I0M2Z5_COLLI_8932 are exactly identical! WARNING: Sequences tr_K7FS67_K7FS67_PELSI_13735 and tr_A0A218UPV7_A0A218UPV7_9PASE_299123 are exactly identical! WARNING: Sequences tr_K7FS67_K7FS67_PELSI_13735 and tr_A0A226N091_A0A226N091_CALSU_9009 are exactly identical! WARNING: Sequences tr_H6BKL5_H6BKL5_EXODN_858893 and tr_W9Y4C3_W9Y4C3_9EURO_1182542 are exactly identical! WARNING: Sequences tr_G2Y017_G2Y017_BOTF4_999810 and tr_M7U3J7_M7U3J7_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F7DRF8_F7DRF8_CALJA_9483 and tr_A0A096N324_A0A096N324_PAPAN_9555 are exactly identical! WARNING: Sequences tr_B4MFV5_B4MFV5_DROVI_7244 and tr_B4L9W3_B4L9W3_DROMO_7230 are exactly identical! WARNING: Sequences tr_B3RZG6_B3RZG6_TRIAD_10228 and tr_A0A369RY02_A0A369RY02_9METZ_287889 are exactly identical! WARNING: Sequences tr_K9GR59_K9GR59_PEND2_1170229 and tr_A0A0A2IZN0_A0A0A2IZN0_PENEN_27334 are exactly identical! WARNING: Sequences tr_L2FUZ2_L2FUZ2_COLFN_1213859 and tr_N4VER5_N4VER5_COLOR_1213857 are exactly identical! WARNING: Sequences tr_L2FUZ2_L2FUZ2_COLFN_1213859 and tr_T0LK15_T0LK15_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2FUZ2_L2FUZ2_COLFN_1213859 and tr_A0A010QXB4_A0A010QXB4_9PEZI_1445577 are exactly identical! WARNING: Sequences tr_L2FUZ2_L2FUZ2_COLFN_1213859 and tr_A0A135UHL6_A0A135UHL6_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_L2FUZ2_L2FUZ2_COLFN_1213859 and tr_A0A1G4AZ21_A0A1G4AZ21_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_S2J1F5_S2J1F5_MUCC1_1220926 and tr_A0A168JBT7_A0A168JBT7_MUCCL_747725 are exactly identical! WARNING: Sequences tr_S2JP83_S2JP83_MUCC1_1220926 and tr_A0A168NYT1_A0A168NYT1_MUCCL_747725 are exactly identical! WARNING: Sequences tr_S8EGS0_S8EGS0_FOMPI_743788 and tr_A0A165T4Z8_A0A165T4Z8_9APHY_1314783 are exactly identical! WARNING: Sequences tr_M3ANL2_M3ANL2_PSEFD_383855 and tr_A0A139HSH2_A0A139HSH2_9PEZI_321146 are exactly identical! WARNING: Sequences tr_M2SCA6_M2SCA6_COCSN_665912 and tr_R0KDM4_R0KDM4_SETT2_671987 are exactly identical! WARNING: Sequences tr_M2SCA6_M2SCA6_COCSN_665912 and tr_M2SRU8_M2SRU8_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SCA6_M2SCA6_COCSN_665912 and tr_W6YM79_W6YM79_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SCA6_M2SCA6_COCSN_665912 and tr_W6ZBD8_W6ZBD8_COCMI_930090 are exactly identical! WARNING: Sequences tr_M2SCA6_M2SCA6_COCSN_665912 and tr_A0A177D2P5_A0A177D2P5_ALTAL_5599 are exactly identical! WARNING: Sequences tr_M2SCA6_M2SCA6_COCSN_665912 and tr_A0A364N7C7_A0A364N7C7_9PLEO_183478 are exactly identical! WARNING: Sequences tr_V2XAL1_V2XAL1_MONRO_1381753 and tr_A0A0W0FRR4_A0A0W0FRR4_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W5MGC5_W5MGC5_LEPOC_7918 and tr_A0A2D0QZM2_A0A2D0QZM2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W9VJK5_W9VJK5_9EURO_1182544 and tr_A0A1C1C8Z4_A0A1C1C8Z4_9EURO_86049 are exactly identical! WARNING: Sequences tr_A0A074XTJ6_A0A074XTJ6_9PEZI_1043004 and tr_A0A074YIB5_A0A074YIB5_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A074XTJ6_A0A074XTJ6_9PEZI_1043004 and tr_A0A074VV85_A0A074VV85_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A074XTJ6_A0A074XTJ6_9PEZI_1043004 and tr_A0A074YNP0_A0A074YNP0_AURPU_1043002 are exactly identical! WARNING: Sequences tr_A0A084QDD0_A0A084QDD0_STAC4_1283841 and tr_A0A084RMT0_A0A084RMT0_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A091DL25_A0A091DL25_FUKDA_885580 and tr_A0A383YTW1_A0A383YTW1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A094ER98_A0A094ER98_9PEZI_1420912 and tr_A0A1B8GWE0_A0A1B8GWE0_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094ER98_A0A094ER98_9PEZI_1420912 and tr_A0A1B8CPM2_A0A1B8CPM2_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A060SL37_A0A060SL37_PYCCI_5643 and tr_A0A1Y2IYF6_A0A1Y2IYF6_PYCCO_1353009 are exactly identical! WARNING: Sequences tr_A0A060SL37_A0A060SL37_PYCCI_5643 and tr_A0A371DHF6_A0A371DHF6_9APHY_139420 are exactly identical! WARNING: Sequences tr_W6Q2Z1_W6Q2Z1_PENRF_1365484 and tr_A0A0G4PHU9_A0A0G4PHU9_PENCA_1429867 are exactly identical! WARNING: Sequences tr_W6Q2Z1_W6Q2Z1_PENRF_1365484 and tr_A0A135LEH2_A0A135LEH2_PENPA_5078 are exactly identical! WARNING: Sequences tr_W6Q2Z1_W6Q2Z1_PENRF_1365484 and tr_A0A1V6NHD1_A0A1V6NHD1_9EURO_60169 are exactly identical! WARNING: Sequences tr_W6Q2Z1_W6Q2Z1_PENRF_1365484 and tr_A0A1V6R3K5_A0A1V6R3K5_9EURO_60172 are exactly identical! WARNING: Sequences tr_W6Q2Z1_W6Q2Z1_PENRF_1365484 and tr_A0A1V6Y6V1_A0A1V6Y6V1_PENNA_60175 are exactly identical! WARNING: Sequences tr_A0A0F0ILD6_A0A0F0ILD6_ASPPU_1403190 and tr_A0A2G7G9L0_A0A2G7G9L0_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0F4GRR4_A0A0F4GRR4_9PEZI_1047168 and tr_A0A1X7RLD7_A0A1X7RLD7_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0G2FWU1_A0A0G2FWU1_9PEZI_1214573 and tr_A0A2P5I606_A0A2P5I606_9PEZI_158607 are exactly identical! WARNING: Sequences tr_A0A0K0FBL0_A0A0K0FBL0_STRVS_75913 and tr_A0A0K0E586_A0A0K0E586_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FBL0_A0A0K0FBL0_STRVS_75913 and tr_A0A0N5CFR6_A0A0N5CFR6_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0A1P644_A0A0A1P644_9FUNG_58291 and tr_A0A367JZ12_A0A367JZ12_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0F7TPI5_A0A0F7TPI5_9EURO_104259 and tr_A0A1Q5UDW3_A0A1Q5UDW3_9EURO_1316194 are exactly identical! WARNING: Sequences tr_A0A091UN68_A0A091UN68_NIPNI_128390 and tr_A0A0A0A247_A0A0A0A247_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093HWD5_A0A093HWD5_STRCA_441894 and tr_A0A091G0W3_A0A091G0W3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0L0SJ21_A0A0L0SJ21_ALLMA_578462 and tr_A0A0L0STV2_A0A0L0STV2_ALLMA_578462 are exactly identical! WARNING: Sequences tr_A0A0L0T1U4_A0A0L0T1U4_ALLMA_578462 and tr_A0A0L0T3P2_A0A0L0T3P2_ALLMA_578462 are exactly identical! WARNING: Sequences tr_A0A0D2CV56_A0A0D2CV56_9EURO_569365 and tr_A0A178ZUC2_A0A178ZUC2_9EURO_1367422 are exactly identical! WARNING: Sequences tr_A0A0V0XUW1_A0A0V0XUW1_TRIPS_6337 and tr_A0A0V1MRQ9_A0A0V1MRQ9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0XUW1_A0A0V0XUW1_TRIPS_6337 and tr_A0A0V1I184_A0A0V1I184_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0W7VW98_A0A0W7VW98_9HYPO_398673 and tr_A0A2T3Z046_A0A2T3Z046_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_A0A194XPJ1_A0A194XPJ1_9HELO_149040 and tr_A0A1L7WX10_A0A1L7WX10_9HELO_576137 are exactly identical! WARNING: Sequences tr_A0A194XPJ1_A0A194XPJ1_9HELO_149040 and tr_A0A2J6T7P3_A0A2J6T7P3_9HELO_1095630 are exactly identical! WARNING: Sequences tr_A0A1S3JQ12_A0A1S3JQ12_LINUN_7574 and tr_A0A1S3JQB6_A0A1S3JQB6_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3LQE9_A0A1S3LQE9_SALSA_8030 and tr_A0A060WXK5_A0A060WXK5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P5Y2_A0A1S3P5Y2_SALSA_8030 and tr_A0A060XMJ2_A0A060XMJ2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RMN0_A0A1S3RMN0_SALSA_8030 and tr_A0A060XBV2_A0A060XBV2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1E1KMV3_A0A1E1KMV3_9HELO_914237 and tr_A0A2V1CW18_A0A2V1CW18_9HELO_1485229 are exactly identical! WARNING: Sequences tr_A0A1L9P3G0_A0A1L9P3G0_ASPVE_1036611 and tr_A0A1L9TR97_A0A1L9TR97_9EURO_1036612 are exactly identical! WARNING: Sequences tr_A0A1L9WRI9_A0A1L9WRI9_ASPAC_690307 and tr_A0A319C3Z2_A0A319C3Z2_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WRI9_A0A1L9WRI9_ASPAC_690307 and tr_A0A2V5HTB6_A0A2V5HTB6_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WRI9_A0A1L9WRI9_ASPAC_690307 and tr_A0A395I1L7_A0A395I1L7_9EURO_1450537 are exactly identical! WARNING: Sequences tr_A0A1L9WRI9_A0A1L9WRI9_ASPAC_690307 and tr_A0A2V5H1E0_A0A2V5H1E0_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3R6Y0_A0A1R3R6Y0_ASPC5_602072 and tr_A0A317XB76_A0A317XB76_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1R3R6Y0_A0A1R3R6Y0_ASPC5_602072 and tr_A0A319F0H5_A0A319F0H5_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1U7SVW0_A0A1U7SVW0_TARSY_1868482 and tr_A0A2Y9SRE5_A0A2Y9SRE5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A226MYT0_A0A226MYT0_CALSU_9009 and tr_A0A226P990_A0A226P990_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3EH07_A0A2H3EH07_ARMGA_47427 and tr_A0A2H3C0H9_A0A2H3C0H9_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3EH07_A0A2H3EH07_ARMGA_47427 and tr_A0A284RCE2_A0A284RCE2_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2H3IG56_A0A2H3IG56_9EURO_290292 and tr_A0A364L5D2_A0A364L5D2_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2G5I2H5_A0A2G5I2H5_CERBT_122368 and tr_A0A2S6CBT9_A0A2S6CBT9_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2U4BXF9_A0A2U4BXF9_TURTR_9739 and tr_A0A2Y9QFB8_A0A2Y9QFB8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A317WGZ6_A0A317WGZ6_9EURO_1448321 and tr_A0A319DQG0_A0A319DQG0_9EURO_1448320 are exactly identical! WARNING: Sequences tr_A0A369HCR9_A0A369HCR9_9HYPO_2039874 and tr_A0A367L059_A0A367L059_9HYPO_1330021 are exactly identical! WARNING: Duplicate sequences found: 254 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520.raxml.reduced.phy Alignment comprises 1 partitions and 340 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 340 Gaps: 0.85 % Invariant sites: 7.94 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/3_mltree/P16520.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 85 / 6800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -46189.281992 [00:00:00 -46189.281992] Initial branch length optimization [00:00:01 -45996.697166] Model parameter optimization (eps = 0.100000) [00:00:28] Tree #1, final logLikelihood: -45805.000225 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.347287,0.428883) (0.358360,0.702857) (0.217329,1.584915) (0.077023,3.307179) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P16520/4_raxmlng_ancestral/P16520.raxml.log Analysis started: 02-Jun-2021 18:07:51 / finished: 02-Jun-2021 18:08:23 Elapsed time: 31.854 seconds Consumed energy: 2.569 Wh