RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 05-Jul-2021 01:58:01 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/2_msa/P15814_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/2_msa/P15814_trimmed_msa.fasta
[00:00:00] Loaded alignment with 865 taxa and 96 sites

WARNING: Sequences sp_P20763_LAC_CHICK_9031 and tr_R9PXM5_R9PXM5_CHICK_9031 are exactly identical!
WARNING: Sequences tr_A0A075B5J3_A0A075B5J3_MOUSE_10090 and tr_A0A075B5J4_A0A075B5J4_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5J3_A0A075B5J3_MOUSE_10090 and sp_P01851_TCB2_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5J3_A0A075B5J3_MOUSE_10090 and sp_P01852_TCB1_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0G2JE99_A0A0G2JE99_MOUSE_10090 and sp_P01843_LAC1_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01863_GCAA_MOUSE_10090 and sp_P01865_GCAM_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A3B3HDM6_A0A3B3HDM6_ORYLA_8090 and tr_H2L5S7_H2L5S7_ORYLA_8090 are exactly identical!
WARNING: Sequences tr_G1R4P3_G1R4P3_NOMLE_61853 and sp_P01906_DQA2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1PV74_G1PV74_MYOLU_59463 and tr_G1PY90_G1PY90_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1Q2D9_G1Q2D9_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1Q584_G1Q584_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1Q798_G1Q798_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1QDP2_G1QDP2_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A2I2Y8M1_A0A2I2Y8M1_GORGO_9595 and tr_A0A2R9AKE6_A0A2R9AKE6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2YH49_A0A2I2YH49_GORGO_9595 and tr_A0A2I3RH44_A0A2I3RH44_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YH49_A0A2I2YH49_GORGO_9595 and sp_P15814_IGLL1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2ZX49_A0A2I2ZX49_GORGO_9595 and tr_A0A2R8ZL01_A0A2R8ZL01_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QFY0_G3QFY0_GORGO_9595 and tr_H2PL62_H2PL62_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3SBN3_G3SBN3_GORGO_9595 and tr_A0A2I3RU10_A0A2I3RU10_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SBN3_G3SBN3_GORGO_9595 and tr_A0A2R9AJV4_A0A2R9AJV4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3SEV9_G3SEV9_GORGO_9595 and tr_H2RGZ2_H2RGZ2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SEV9_G3SEV9_GORGO_9595 and tr_A0A2R8ZIP7_A0A2R8ZIP7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2PIP9_H2PIP9_PONAB_9601 and tr_H2QSS3_H2QSS3_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2PIP9_H2PIP9_PONAB_9601 and sp_P06340_DOA_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PP94_H2PP94_PONAB_9601 and sp_A0A5B9_TRBC2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1T5L0_G1T5L0_RABIT_9986 and sp_P03988_IGHM_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1T5L0_G1T5L0_RABIT_9986 and sp_P04221_MUCM_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1TRK9_G1TRK9_RABIT_9986 and sp_P01839_KACB_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1TWM5_G1TWM5_RABIT_9986 and sp_P06333_TCB1_RABIT_9986 are exactly identical!
WARNING: Sequences tr_F1PSX2_F1PSX2_CANLF_9615 and tr_H9GWR8_H9GWR8_CANLF_9615 are exactly identical!
WARNING: Sequences tr_J9NSQ1_J9NSQ1_CANLF_9615 and tr_L7N0F2_L7N0F2_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3T0F4_A0A2I3T0F4_PANTR_9598 and sp_P01861_IGHG4_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3T0F4_A0A2I3T0F4_PANTR_9598 and tr_A0A2R9ATU5_A0A2R9ATU5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QSR5_H2QSR5_PANTR_9598 and tr_A0A2R9BJY2_A0A2R9BJY2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QSS4_H2QSS4_PANTR_9598 and tr_A0A2R9AKD7_A0A2R9AKD7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2RGH5_H2RGH5_PANTR_9598 and tr_A0A2R9A045_A0A2R9A045_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6X1K3_F6X1K3_MONDO_13616 and tr_F6X1N6_F6X1N6_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F6ZDI2_F6ZDI2_MONDO_13616 and tr_H9H723_H9H723_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F7BI68_F7BI68_MONDO_13616 and tr_F7BIP4_F7BIP4_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F6W3U2_F6W3U2_HORSE_9796 and tr_H9GZV9_H9GZV9_HORSE_9796 are exactly identical!
WARNING: Sequences tr_W5P8R9_W5P8R9_SHEEP_9940 and tr_W5Q479_W5Q479_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_A0A0G2K8K8_A0A0G2K8K8_RAT_10116 and sp_P20766_LAC1_RAT_10116 are exactly identical!
WARNING: Sequences tr_F1LTN6_F1LTN6_RAT_10116 and sp_P01835_KACB_RAT_10116 are exactly identical!
WARNING: Sequences tr_F1M520_F1M520_RAT_10116 and tr_F1M7Z6_F1M7Z6_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A3B5PWQ2_A0A3B5PWQ2_XIPMA_8083 and tr_A0A3B5R2P9_A0A3B5R2P9_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B5QAQ9_A0A3B5QAQ9_XIPMA_8083 and tr_A0A3B5QIY6_A0A3B5QIY6_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B5QEK8_A0A3B5QEK8_XIPMA_8083 and tr_A0A3B5QF95_A0A3B5QF95_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B5QJB4_A0A3B5QJB4_XIPMA_8083 and tr_A0A3B5QLW8_A0A3B5QLW8_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B5QJB4_A0A3B5QJB4_XIPMA_8083 and tr_A0A3B5RCG4_A0A3B5RCG4_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B5K6D8_A0A3B5K6D8_TAKRU_31033 and tr_A0A3B5KLH9_A0A3B5KLH9_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_A0A3B5KVC0_A0A3B5KVC0_TAKRU_31033 and tr_H2S813_H2S813_TAKRU_31033 are exactly identical!
WARNING: Sequences sp_B9A064_IGLL5_HUMAN_9606 and sp_P0CG04_IGLC1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P01857_IGHG1_HUMAN_9606 and tr_A0A2R9ARU9_A0A2R9ARU9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_G8F4J6_G8F4J6_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A0D9RAA6_A0A0D9RAA6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A2K5NVH7_A0A2K5NVH7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A2K6AWZ7_A0A2K6AWZ7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A2K5XS14_A0A2K5XS14_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A2TJ58_A2TJ58_MACMU_9544 and tr_A0A2K5Y5U4_A0A2K5Y5U4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_F6W0E5_F6W0E5_MACMU_9544 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_G7PHD3_G7PHD3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2I3NC97_A0A2I3NC97_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5NW12_A0A2K5NW12_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K6AZT5_A0A2K6AZT5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5XM92_A0A2K5XM92_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2I3LVY2_A0A2I3LVY2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2I3MA75_A0A2I3MA75_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2K5KN32_A0A2K5KN32_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2K5KNX6_A0A2K5KNX6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2K6AZI7_A0A2K6AZI7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2K5XMN1_A0A2K5XMN1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6V0N6_F6V0N6_MACMU_9544 and tr_A0A2K5XW74_A0A2K5XW74_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6V1V5_F6V1V5_MACMU_9544 and tr_A0A2K6D0M8_A0A2K6D0M8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7DKI0_F7DKI0_MACMU_9544 and tr_G7PHD1_G7PHD1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2I3MCZ4_A0A2I3MCZ4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2K6AWE3_A0A2K6AWE3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2K5XR48_A0A2K5XR48_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7GMK4_F7GMK4_MACMU_9544 and tr_A0A2K6ATF3_A0A2K6ATF3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_K7GDI7_K7GDI7_PELSI_13735 and tr_K7GDL8_K7GDL8_PELSI_13735 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3N7A9_G3N7A9_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3N7B2_G3N7B2_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3N7R8_G3N7R8_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3NAJ2_G3NAJ2_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3NAK0_G3NAK0_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3NQA4_G3NQA4_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3P9Y1_G3P9Y1_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3P9Y5_G3P9Y5_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3P9Y8_G3P9Y8_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3P9Z2_G3P9Z2_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3N7A7_G3N7A7_GASAC_69293 and tr_G3PMJ5_G3PMJ5_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3P3U0_G3P3U0_GASAC_69293 and tr_G3P4H8_G3P4H8_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3P3W4_G3P3W4_GASAC_69293 and tr_G3Q4B0_G3Q4B0_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G3VEL9_G3VEL9_SARHA_9305 and tr_G3VMP7_G3VMP7_SARHA_9305 are exactly identical!
WARNING: Sequences tr_G3VEL9_G3VEL9_SARHA_9305 and tr_G3VNR1_G3VNR1_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A1B8XY00_A0A1B8XY00_XENTR_8364 and tr_F6TGA0_F6TGA0_XENTR_8364 are exactly identical!
WARNING: Sequences tr_F7BEU7_F7BEU7_XENTR_8364 and tr_F7BF18_F7BF18_XENTR_8364 are exactly identical!
WARNING: Sequences tr_A0A0A0MY58_A0A0A0MY58_PIG_9823 and tr_A0A286ZWN6_A0A286ZWN6_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A0A0MY58_A0A0A0MY58_PIG_9823 and sp_P01846_LAC_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1L6E1_G1L6E1_AILME_9646 and tr_G1L6F1_G1L6F1_AILME_9646 are exactly identical!
WARNING: Sequences tr_A4L274_A4L274_MACFA_9541 and tr_A0A0D9RAK1_A0A0D9RAK1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A4L274_A4L274_MACFA_9541 and tr_A0A2K5XH39_A0A2K5XH39_MANLE_9568 are exactly identical!
WARNING: Sequences tr_E1BAW9_E1BAW9_BOVIN_9913 and tr_G3X7Z4_G3X7Z4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A3B1IZ92_A0A3B1IZ92_ASTMX_7994 and tr_A0A3B1K0S5_A0A3B1K0S5_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A087XKU4_A0A087XKU4_POEFO_48698 and tr_A0A087XKY4_A0A087XKY4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A087XWB8_A0A087XWB8_POEFO_48698 and tr_A0A096M8P3_A0A096M8P3_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A2I3MI51_A0A2I3MI51_PAPAN_9555 and tr_A0A2K5ZHG0_A0A2K5ZHG0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A093PPV0_A0A093PPV0_9PASS_328815 and tr_A0A093T1W0_A0A093T1W0_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1S3QKC1_A0A1S3QKC1_SALSA_8030 and tr_A0A1S3S0L7_A0A1S3S0L7_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A060WXT1_A0A060WXT1_ONCMY_8022 and tr_A0A060YV49_A0A060YV49_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A060Z008_A0A060Z008_ONCMY_8022 and tr_A0A060ZE77_A0A060ZE77_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A226MJ98_A0A226MJ98_CALSU_9009 and tr_A0A226NX05_A0A226NX05_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2K5KQS5_A0A2K5KQS5_CERAT_9531 and tr_A0A2K5LMK3_A0A2K5LMK3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2K5KQS5_A0A2K5KQS5_CERAT_9531 and tr_A0A2K5Z179_A0A2K5Z179_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5KWJ5_A0A2K5KWJ5_CERAT_9531 and tr_A0A2K5NVA9_A0A2K5NVA9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2K5NSF3_A0A2K5NSF3_CERAT_9531 and tr_A0A2K5XNN4_A0A2K5XNN4_MANLE_9568 are exactly identical!
WARNING: Duplicate sequences found: 115

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.reduced.phy

Alignment comprises 1 partitions and 96 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 96 / 96
Gaps: 4.81 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 865 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 96 / 7680
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -166307.679108] Initial branch length optimization
[00:00:02 -140310.117061] Model parameter optimization (eps = 10.000000)
[00:00:45 -139737.807485] AUTODETECT spr round 1 (radius: 5)
[00:02:03 -102559.325699] AUTODETECT spr round 2 (radius: 10)
[00:03:30 -79925.795278] AUTODETECT spr round 3 (radius: 15)
[00:05:08 -66063.544069] AUTODETECT spr round 4 (radius: 20)
[00:07:03 -58936.387148] AUTODETECT spr round 5 (radius: 25)
[00:09:01 -55240.179543] SPR radius for FAST iterations: 25 (autodetect)
[00:09:01 -55240.179543] Model parameter optimization (eps = 3.000000)
[00:09:17 -55134.356074] FAST spr round 1 (radius: 25)
[00:10:50 -44592.894050] FAST spr round 2 (radius: 25)
[00:12:05 -44004.129975] FAST spr round 3 (radius: 25)
[00:13:12 -43718.626215] FAST spr round 4 (radius: 25)
[00:14:14 -43706.316536] FAST spr round 5 (radius: 25)
[00:15:14 -43705.839642] FAST spr round 6 (radius: 25)
[00:16:13 -43705.839528] Model parameter optimization (eps = 1.000000)
[00:16:20 -43703.083183] SLOW spr round 1 (radius: 5)
[00:17:37 -43696.828217] SLOW spr round 2 (radius: 5)
[00:18:53 -43695.157232] SLOW spr round 3 (radius: 5)
[00:20:07 -43695.156374] SLOW spr round 4 (radius: 10)
[00:21:20 -43695.095066] SLOW spr round 5 (radius: 15)
[00:23:17 -43695.095063] SLOW spr round 6 (radius: 20)
[00:25:47 -43695.095062] SLOW spr round 7 (radius: 25)
[00:28:52 -43695.095061] Model parameter optimization (eps = 0.100000)

[00:28:58] [worker #0] ML tree search #1, logLikelihood: -43695.085051

[00:28:58 -166090.732091] Initial branch length optimization
[00:29:00 -139446.245054] Model parameter optimization (eps = 10.000000)
[00:29:52 -138923.488856] AUTODETECT spr round 1 (radius: 5)
[00:31:11 -102530.224716] AUTODETECT spr round 2 (radius: 10)
[00:32:38 -79035.821118] AUTODETECT spr round 3 (radius: 15)
[00:33:00] [worker #1] ML tree search #2, logLikelihood: -43673.010035
[00:34:13 -64972.850420] AUTODETECT spr round 4 (radius: 20)
[00:36:08 -56573.905559] AUTODETECT spr round 5 (radius: 25)
[00:38:19 -53412.130360] SPR radius for FAST iterations: 25 (autodetect)
[00:38:19 -53412.130360] Model parameter optimization (eps = 3.000000)
[00:38:35 -53307.491879] FAST spr round 1 (radius: 25)
[00:40:10 -44206.815586] FAST spr round 2 (radius: 25)
[00:41:24 -43754.125840] FAST spr round 3 (radius: 25)
[00:42:31 -43722.910537] FAST spr round 4 (radius: 25)
[00:43:32 -43717.677006] FAST spr round 5 (radius: 25)
[00:44:30 -43717.675604] Model parameter optimization (eps = 1.000000)
[00:44:36 -43715.309002] SLOW spr round 1 (radius: 5)
[00:45:53 -43702.144843] SLOW spr round 2 (radius: 5)
[00:47:08 -43695.388220] SLOW spr round 3 (radius: 5)
[00:48:22 -43695.046746] SLOW spr round 4 (radius: 5)
[00:49:34 -43695.046636] SLOW spr round 5 (radius: 10)
[00:50:47 -43695.046625] SLOW spr round 6 (radius: 15)
[00:52:48 -43695.046625] SLOW spr round 7 (radius: 20)
[00:55:27 -43693.941213] SLOW spr round 8 (radius: 5)
[00:57:04 -43692.816873] SLOW spr round 9 (radius: 5)
[00:58:27 -43692.816850] SLOW spr round 10 (radius: 10)
[00:59:44 -43692.816846] SLOW spr round 11 (radius: 15)
[01:01:40 -43692.816846] SLOW spr round 12 (radius: 20)
[01:01:41] [worker #1] ML tree search #4, logLikelihood: -43673.185216
[01:04:24 -43692.816846] SLOW spr round 13 (radius: 25)
[01:07:42 -43680.308609] SLOW spr round 14 (radius: 5)
[01:09:19 -43675.955012] SLOW spr round 15 (radius: 5)
[01:10:44 -43675.954866] SLOW spr round 16 (radius: 10)
[01:12:01 -43675.954850] SLOW spr round 17 (radius: 15)
[01:13:57 -43675.954848] SLOW spr round 18 (radius: 20)
[01:16:42 -43675.954847] SLOW spr round 19 (radius: 25)
[01:20:00 -43675.954847] Model parameter optimization (eps = 0.100000)

[01:20:05] [worker #0] ML tree search #3, logLikelihood: -43675.944999

[01:20:05 -166730.000975] Initial branch length optimization
[01:20:07 -140227.170725] Model parameter optimization (eps = 10.000000)
[01:20:43 -139622.299545] AUTODETECT spr round 1 (radius: 5)
[01:22:02 -103759.387537] AUTODETECT spr round 2 (radius: 10)
[01:23:29 -79142.058869] AUTODETECT spr round 3 (radius: 15)
[01:25:11 -66352.808202] AUTODETECT spr round 4 (radius: 20)
[01:27:10 -54032.522480] AUTODETECT spr round 5 (radius: 25)
[01:29:17 -52745.959031] SPR radius for FAST iterations: 25 (autodetect)
[01:29:17 -52745.959031] Model parameter optimization (eps = 3.000000)
[01:29:29 -52630.938276] FAST spr round 1 (radius: 25)
[01:31:01 -44221.329395] FAST spr round 2 (radius: 25)
[01:32:14 -43742.482181] FAST spr round 3 (radius: 25)
[01:33:20 -43707.608994] FAST spr round 4 (radius: 25)
[01:34:24 -43701.996322] FAST spr round 5 (radius: 25)
[01:35:25 -43699.209858] FAST spr round 6 (radius: 25)
[01:36:25 -43698.330130] FAST spr round 7 (radius: 25)
[01:37:32 -43698.328832] Model parameter optimization (eps = 1.000000)
[01:37:44 -43693.583886] SLOW spr round 1 (radius: 5)
[01:39:26 -43682.655554] SLOW spr round 2 (radius: 5)
[01:41:10 -43678.788011] SLOW spr round 3 (radius: 5)
[01:42:52 -43678.784229] SLOW spr round 4 (radius: 10)
[01:44:33 -43678.257003] SLOW spr round 5 (radius: 5)
[01:46:37 -43678.256905] SLOW spr round 6 (radius: 10)
[01:48:27 -43678.256893] SLOW spr round 7 (radius: 15)
[01:50:59 -43678.256892] SLOW spr round 8 (radius: 20)
[01:54:36 -43678.256892] SLOW spr round 9 (radius: 25)
[01:56:41] [worker #1] ML tree search #6, logLikelihood: -43680.464629
[01:58:53 -43678.256892] Model parameter optimization (eps = 0.100000)

[01:59:00] [worker #0] ML tree search #5, logLikelihood: -43678.247987

[01:59:00 -165763.072501] Initial branch length optimization
[01:59:03 -139546.174012] Model parameter optimization (eps = 10.000000)
[01:59:47 -139082.573491] AUTODETECT spr round 1 (radius: 5)
[02:01:34 -103499.954618] AUTODETECT spr round 2 (radius: 10)
[02:03:33 -77208.608983] AUTODETECT spr round 3 (radius: 15)
[02:05:41 -64580.628310] AUTODETECT spr round 4 (radius: 20)
[02:08:07 -56531.434590] AUTODETECT spr round 5 (radius: 25)
[02:10:58 -54763.408963] SPR radius for FAST iterations: 25 (autodetect)
[02:10:58 -54763.408963] Model parameter optimization (eps = 3.000000)
[02:11:19 -54660.734002] FAST spr round 1 (radius: 25)
[02:13:27 -45923.934381] FAST spr round 2 (radius: 25)
[02:15:09 -43949.107473] FAST spr round 3 (radius: 25)
[02:16:42 -43757.929496] FAST spr round 4 (radius: 25)
[02:18:10 -43744.033421] FAST spr round 5 (radius: 25)
[02:19:33 -43688.120493] FAST spr round 6 (radius: 25)
[02:20:55 -43688.118873] Model parameter optimization (eps = 1.000000)
[02:21:10 -43682.806950] SLOW spr round 1 (radius: 5)
[02:22:56 -43673.684708] SLOW spr round 2 (radius: 5)
[02:24:39 -43671.453475] SLOW spr round 3 (radius: 5)
[02:26:19 -43671.453130] SLOW spr round 4 (radius: 10)
[02:27:58 -43669.937595] SLOW spr round 5 (radius: 5)
[02:30:00 -43669.937579] SLOW spr round 6 (radius: 10)
[02:31:48 -43669.937579] SLOW spr round 7 (radius: 15)
[02:34:13 -43669.937578] SLOW spr round 8 (radius: 20)
[02:37:37 -43669.937578] SLOW spr round 9 (radius: 25)
[02:41:44 -43669.937578] Model parameter optimization (eps = 0.100000)

[02:41:48] [worker #0] ML tree search #7, logLikelihood: -43669.927306

[02:41:48 -166999.892162] Initial branch length optimization
[02:41:51 -139604.460735] Model parameter optimization (eps = 10.000000)
[02:42:43 -139108.358390] AUTODETECT spr round 1 (radius: 5)
[02:44:30 -104180.498005] AUTODETECT spr round 2 (radius: 10)
[02:46:32 -78007.267573] AUTODETECT spr round 3 (radius: 15)
[02:48:40 -66167.678717] AUTODETECT spr round 4 (radius: 20)
[02:51:14 -58237.420119] AUTODETECT spr round 5 (radius: 25)
[02:53:42] [worker #1] ML tree search #8, logLikelihood: -43702.070685
[02:54:26 -52268.417636] SPR radius for FAST iterations: 25 (autodetect)
[02:54:26 -52268.417636] Model parameter optimization (eps = 3.000000)
[02:54:50 -52169.744308] FAST spr round 1 (radius: 25)
[02:56:53 -44036.721471] FAST spr round 2 (radius: 25)
[02:58:35 -43759.932431] FAST spr round 3 (radius: 25)
[03:00:07 -43712.955789] FAST spr round 4 (radius: 25)
[03:01:35 -43703.017646] FAST spr round 5 (radius: 25)
[03:03:00 -43700.713452] FAST spr round 6 (radius: 25)
[03:04:23 -43700.713408] Model parameter optimization (eps = 1.000000)
[03:04:37 -43694.934529] SLOW spr round 1 (radius: 5)
[03:06:23 -43675.988681] SLOW spr round 2 (radius: 5)
[03:08:07 -43675.193093] SLOW spr round 3 (radius: 5)
[03:09:48 -43674.570118] SLOW spr round 4 (radius: 5)
[03:11:27 -43674.570077] SLOW spr round 5 (radius: 10)
[03:13:09 -43674.570066] SLOW spr round 6 (radius: 15)
[03:15:47 -43674.570064] SLOW spr round 7 (radius: 20)
[03:19:13 -43674.375990] SLOW spr round 8 (radius: 5)
[03:21:24 -43674.074124] SLOW spr round 9 (radius: 5)
[03:23:18 -43674.074096] SLOW spr round 10 (radius: 10)
[03:25:03 -43674.074094] SLOW spr round 11 (radius: 15)
[03:27:35 -43674.074092] SLOW spr round 12 (radius: 20)
[03:31:05 -43674.074089] SLOW spr round 13 (radius: 25)
[03:35:21 -43674.074087] Model parameter optimization (eps = 0.100000)

[03:35:25] [worker #0] ML tree search #9, logLikelihood: -43674.065913

[03:35:25 -166542.861591] Initial branch length optimization
[03:35:28 -140216.715526] Model parameter optimization (eps = 10.000000)
[03:36:03 -139815.825054] AUTODETECT spr round 1 (radius: 5)
[03:37:52 -104536.225524] AUTODETECT spr round 2 (radius: 10)
[03:39:52 -79668.550110] AUTODETECT spr round 3 (radius: 15)
[03:42:02 -65320.287832] AUTODETECT spr round 4 (radius: 20)
[03:44:32 -54269.128026] AUTODETECT spr round 5 (radius: 25)
[03:44:46] [worker #1] ML tree search #10, logLikelihood: -43806.586887
[03:47:21 -52489.067088] SPR radius for FAST iterations: 25 (autodetect)
[03:47:21 -52489.067088] Model parameter optimization (eps = 3.000000)
[03:47:37 -52403.521629] FAST spr round 1 (radius: 25)
[03:49:42 -44499.197341] FAST spr round 2 (radius: 25)
[03:51:27 -43726.368011] FAST spr round 3 (radius: 25)
[03:52:57 -43707.586527] FAST spr round 4 (radius: 25)
[03:54:25 -43697.431676] FAST spr round 5 (radius: 25)
[03:55:48 -43696.573093] FAST spr round 6 (radius: 25)
[03:57:10 -43696.572915] Model parameter optimization (eps = 1.000000)
[03:57:22 -43692.433303] SLOW spr round 1 (radius: 5)
[03:59:08 -43681.897012] SLOW spr round 2 (radius: 5)
[04:00:52 -43681.103246] SLOW spr round 3 (radius: 5)
[04:02:34 -43680.939801] SLOW spr round 4 (radius: 5)
[04:04:14 -43680.939662] SLOW spr round 5 (radius: 10)
[04:05:55 -43679.807353] SLOW spr round 6 (radius: 5)
[04:07:59 -43679.807048] SLOW spr round 7 (radius: 10)
[04:09:50 -43679.807039] SLOW spr round 8 (radius: 15)
[04:12:20 -43679.363027] SLOW spr round 9 (radius: 5)
[04:14:27 -43679.362523] SLOW spr round 10 (radius: 10)
[04:16:21 -43679.362492] SLOW spr round 11 (radius: 15)
[04:18:48 -43679.362489] SLOW spr round 12 (radius: 20)
[04:20:17] [worker #1] ML tree search #12, logLikelihood: -43697.157869
[04:22:28 -43676.570825] SLOW spr round 13 (radius: 5)
[04:24:36 -43676.570405] SLOW spr round 14 (radius: 10)
[04:26:32 -43673.355439] SLOW spr round 15 (radius: 5)
[04:28:32 -43671.749321] SLOW spr round 16 (radius: 5)
[04:30:19 -43671.749029] SLOW spr round 17 (radius: 10)
[04:31:59 -43671.749008] SLOW spr round 18 (radius: 15)
[04:34:31 -43671.749005] SLOW spr round 19 (radius: 20)
[04:37:56 -43671.749003] SLOW spr round 20 (radius: 25)
[04:42:07 -43671.749002] Model parameter optimization (eps = 0.100000)

[04:42:11] [worker #0] ML tree search #11, logLikelihood: -43671.745150

[04:42:11 -166481.916944] Initial branch length optimization
[04:42:14 -139208.096699] Model parameter optimization (eps = 10.000000)
[04:42:51 -138679.122647] AUTODETECT spr round 1 (radius: 5)
[04:44:39 -103013.419015] AUTODETECT spr round 2 (radius: 10)
[04:46:38 -76742.698647] AUTODETECT spr round 3 (radius: 15)
[04:48:43 -63337.422956] AUTODETECT spr round 4 (radius: 20)
[04:51:07 -57701.574073] AUTODETECT spr round 5 (radius: 25)
[04:53:43 -54039.261925] SPR radius for FAST iterations: 25 (autodetect)
[04:53:43 -54039.261925] Model parameter optimization (eps = 3.000000)
[04:54:15 -53918.292721] FAST spr round 1 (radius: 25)
[04:56:25 -44614.864822] FAST spr round 2 (radius: 25)
[04:57:19] [worker #1] ML tree search #14, logLikelihood: -43673.851650
[04:58:04 -43958.339920] FAST spr round 3 (radius: 25)
[04:59:37 -43922.265131] FAST spr round 4 (radius: 25)
[05:01:05 -43904.322723] FAST spr round 5 (radius: 25)
[05:02:26 -43903.853378] FAST spr round 6 (radius: 25)
[05:03:46 -43903.853151] Model parameter optimization (eps = 1.000000)
[05:04:01 -43896.834200] SLOW spr round 1 (radius: 5)
[05:05:43 -43882.142143] SLOW spr round 2 (radius: 5)
[05:07:25 -43879.531151] SLOW spr round 3 (radius: 5)
[05:09:07 -43878.468418] SLOW spr round 4 (radius: 5)
[05:10:48 -43874.103026] SLOW spr round 5 (radius: 5)
[05:12:26 -43874.102829] SLOW spr round 6 (radius: 10)
[05:14:05 -43873.418377] SLOW spr round 7 (radius: 5)
[05:16:06 -43873.327370] SLOW spr round 8 (radius: 10)
[05:17:55 -43873.327121] SLOW spr round 9 (radius: 15)
[05:20:19 -43873.327106] SLOW spr round 10 (radius: 20)
[05:23:38 -43873.327104] SLOW spr round 11 (radius: 25)
[05:27:32 -43873.327103] Model parameter optimization (eps = 0.100000)

[05:27:37] [worker #0] ML tree search #13, logLikelihood: -43873.233262

[05:27:37 -166477.543586] Initial branch length optimization
[05:27:40 -139190.765066] Model parameter optimization (eps = 10.000000)
[05:28:42 -138681.946403] AUTODETECT spr round 1 (radius: 5)
[05:30:29 -104298.072640] AUTODETECT spr round 2 (radius: 10)
[05:32:24 -77606.782262] AUTODETECT spr round 3 (radius: 15)
[05:32:31] [worker #1] ML tree search #16, logLikelihood: -43677.688417
[05:34:41 -61159.078956] AUTODETECT spr round 4 (radius: 20)
[05:37:03 -55376.396938] AUTODETECT spr round 5 (radius: 25)
[05:39:43 -53774.353630] SPR radius for FAST iterations: 25 (autodetect)
[05:39:43 -53774.353630] Model parameter optimization (eps = 3.000000)
[05:40:02 -53658.216568] FAST spr round 1 (radius: 25)
[05:42:04 -44606.935516] FAST spr round 2 (radius: 25)
[05:43:40 -43821.285088] FAST spr round 3 (radius: 25)
[05:45:11 -43718.493559] FAST spr round 4 (radius: 25)
[05:46:36 -43712.136965] FAST spr round 5 (radius: 25)
[05:47:58 -43709.794968] FAST spr round 6 (radius: 25)
[05:49:19 -43709.794688] Model parameter optimization (eps = 1.000000)
[05:49:33 -43705.715139] SLOW spr round 1 (radius: 5)
[05:51:15 -43695.039178] SLOW spr round 2 (radius: 5)
[05:52:57 -43692.301398] SLOW spr round 3 (radius: 5)
[05:54:37 -43692.191993] SLOW spr round 4 (radius: 5)
[05:56:15 -43692.191866] SLOW spr round 5 (radius: 10)
[05:57:54 -43692.191831] SLOW spr round 6 (radius: 15)
[06:00:32 -43692.191810] SLOW spr round 7 (radius: 20)
[06:03:55] [worker #1] ML tree search #18, logLikelihood: -43844.179168
[06:03:58 -43692.191788] SLOW spr round 8 (radius: 25)
[06:08:16 -43692.191767] Model parameter optimization (eps = 0.100000)

[06:08:22] [worker #0] ML tree search #15, logLikelihood: -43692.168666

[06:08:22 -166622.556354] Initial branch length optimization
[06:08:24 -139672.468556] Model parameter optimization (eps = 10.000000)
[06:09:09 -139261.842610] AUTODETECT spr round 1 (radius: 5)
[06:10:55 -106219.680297] AUTODETECT spr round 2 (radius: 10)
[06:12:57 -77137.956024] AUTODETECT spr round 3 (radius: 15)
[06:15:09 -64462.417091] AUTODETECT spr round 4 (radius: 20)
[06:17:37 -55970.214617] AUTODETECT spr round 5 (radius: 25)
[06:20:17 -53881.649250] SPR radius for FAST iterations: 25 (autodetect)
[06:20:17 -53881.649250] Model parameter optimization (eps = 3.000000)
[06:20:34 -53828.973395] FAST spr round 1 (radius: 25)
[06:22:41 -44295.670130] FAST spr round 2 (radius: 25)
[06:24:20 -43758.662096] FAST spr round 3 (radius: 25)
[06:25:52 -43715.011049] FAST spr round 4 (radius: 25)
[06:27:17 -43706.658179] FAST spr round 5 (radius: 25)
[06:28:38 -43706.657699] Model parameter optimization (eps = 1.000000)
[06:28:52 -43689.513725] SLOW spr round 1 (radius: 5)
[06:30:36 -43672.665914] SLOW spr round 2 (radius: 5)
[06:32:19 -43670.912914] SLOW spr round 3 (radius: 5)
[06:33:53] [worker #1] ML tree search #20, logLikelihood: -43663.024611
[06:33:57 -43669.396193] SLOW spr round 4 (radius: 5)
[06:35:34 -43669.396132] SLOW spr round 5 (radius: 10)
[06:37:10 -43668.926006] SLOW spr round 6 (radius: 5)
[06:38:46 -43667.272701] SLOW spr round 7 (radius: 5)
[06:40:08 -43664.327046] SLOW spr round 8 (radius: 5)
[06:41:22 -43664.325562] SLOW spr round 9 (radius: 10)
[06:42:35 -43664.325368] SLOW spr round 10 (radius: 15)
[06:44:29 -43664.325340] SLOW spr round 11 (radius: 20)
[06:47:04 -43664.325335] SLOW spr round 12 (radius: 25)
[06:50:15 -43664.325333] Model parameter optimization (eps = 0.100000)

[06:50:20] [worker #0] ML tree search #17, logLikelihood: -43664.245076

[06:50:20 -166058.068405] Initial branch length optimization
[06:50:22 -139223.721303] Model parameter optimization (eps = 10.000000)
[06:50:46 -138817.504441] AUTODETECT spr round 1 (radius: 5)
[06:52:04 -103905.600252] AUTODETECT spr round 2 (radius: 10)
[06:53:32 -77186.840764] AUTODETECT spr round 3 (radius: 15)
[06:55:12 -59508.843641] AUTODETECT spr round 4 (radius: 20)
[06:57:08 -53044.102574] AUTODETECT spr round 5 (radius: 25)
[06:59:25 -52061.812754] SPR radius for FAST iterations: 25 (autodetect)
[06:59:25 -52061.812754] Model parameter optimization (eps = 3.000000)
[06:59:39 -51981.971170] FAST spr round 1 (radius: 25)
[07:01:07 -44272.645789] FAST spr round 2 (radius: 25)
[07:02:21 -43796.427700] FAST spr round 3 (radius: 25)
[07:03:28 -43731.617679] FAST spr round 4 (radius: 25)
[07:04:29 -43715.461719] FAST spr round 5 (radius: 25)
[07:05:27 -43714.418407] FAST spr round 6 (radius: 25)
[07:06:25 -43714.418111] Model parameter optimization (eps = 1.000000)
[07:06:35 -43705.771509] SLOW spr round 1 (radius: 5)
[07:07:51 -43688.252575] SLOW spr round 2 (radius: 5)
[07:09:07 -43688.000946] SLOW spr round 3 (radius: 5)
[07:10:19 -43687.989224] SLOW spr round 4 (radius: 10)
[07:11:32 -43685.920791] SLOW spr round 5 (radius: 5)
[07:13:03 -43685.898481] SLOW spr round 6 (radius: 10)
[07:14:24 -43685.898322] SLOW spr round 7 (radius: 15)
[07:16:09 -43685.898193] SLOW spr round 8 (radius: 20)
[07:18:37 -43685.898068] SLOW spr round 9 (radius: 25)
[07:21:36 -43685.897950] Model parameter optimization (eps = 0.100000)

[07:21:39] [worker #0] ML tree search #19, logLikelihood: -43685.884255


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.114688,0.375257) (0.124895,0.462543) (0.439533,0.909947) (0.320884,1.555832) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -43663.024611

AIC score: 90792.049222 / AICc score: 6100836.049222 / BIC score: 95236.064638
Free parameters (model + branch lengths): 1733

WARNING: Number of free parameters (K=1733) is larger than alignment size (n=96).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 186 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P15814/3_mltree/P15814.raxml.log

Analysis started: 05-Jul-2021 01:58:01 / finished: 05-Jul-2021 09:19:41

Elapsed time: 26500.079 seconds

Consumed energy: 2479.103 Wh (= 12 km in an electric car, or 62 km with an e-scooter!)