RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:44:00 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/2_msa/P12235_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/3_mltree/P12235.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622803440 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/2_msa/P12235_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 298 sites WARNING: Sequences tr_B4R7M9_B4R7M9_DROSI_7240 and sp_Q26365_ADT_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R7M9_B4R7M9_DROSI_7240 and tr_B4IDU1_B4IDU1_DROSE_7238 are exactly identical! WARNING: Sequences tr_F1NJ10_F1NJ10_CHICK_9031 and tr_A0A226NY36_A0A226NY36_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q5ZLG7_Q5ZLG7_CHICK_9031 and tr_A0A0Q3QWH2_A0A0Q3QWH2_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5ZLG7_Q5ZLG7_CHICK_9031 and tr_A0A1V4JB95_A0A1V4JB95_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1RT90_G1RT90_NOMLE_61853 and sp_Q9H0C2_ADT4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_G3REE3_G3REE3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_H2PWL4_H2PWL4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_K7B2A6_K7B2A6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_F7GUA1_F7GUA1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_F6WDV6_F6WDV6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_A0A096MZH6_A0A096MZH6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_A0A0D9S0H6_A0A0D9S0H6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_A0A2K5LJY0_A0A2K5LJY0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_A0A2K5YID9_A0A2K5YID9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RXU9_G1RXU9_NOMLE_61853 and tr_A0A2R9BII9_A0A2R9BII9_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3KCF0_J3KCF0_COCIM_246410 and tr_E9CZR7_E9CZR7_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KCF0_J3KCF0_COCIM_246410 and tr_A0A0J7BDJ2_A0A0J7BDJ2_COCIT_404692 are exactly identical! WARNING: Sequences tr_B2W2V5_B2W2V5_PYRTR_426418 and tr_A0A2W1EJN9_A0A2W1EJN9_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A2I2YVC0_A0A2I2YVC0_GORGO_9595 and tr_H2PEV7_H2PEV7_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YVC0_A0A2I2YVC0_GORGO_9595 and tr_K7AY97_K7AY97_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YVC0_A0A2I2YVC0_GORGO_9595 and sp_P12235_ADT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YVC0_A0A2I2YVC0_GORGO_9595 and tr_F6QA37_F6QA37_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YVC0_A0A2I2YVC0_GORGO_9595 and tr_A0A2K5MMJ7_A0A2K5MMJ7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YVC0_A0A2I2YVC0_GORGO_9595 and tr_A0A2K6CBR7_A0A2K6CBR7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3SHH3_G3SHH3_GORGO_9595 and tr_A0A2I3REW3_A0A2I3REW3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SHH3_G3SHH3_GORGO_9595 and sp_P12236_ADT3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SHH3_G3SHH3_GORGO_9595 and tr_H9EM10_H9EM10_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3SHH3_G3SHH3_GORGO_9595 and tr_A0A0D9RZQ0_A0A0D9RZQ0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3SHH3_G3SHH3_GORGO_9595 and tr_A0A2K6CAH1_A0A2K6CAH1_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q29H33_Q29H33_DROPS_46245 and tr_B4H0G1_B4H0G1_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NRS8_B8NRS8_ASPFN_332952 and tr_Q2UU95_Q2UU95_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NRS8_B8NRS8_ASPFN_332952 and tr_A0A1S9D544_A0A1S9D544_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UL80_A0A179UL80_BLAGS_559298 and tr_C5G8D2_C5G8D2_AJEDR_559297 are exactly identical! WARNING: Sequences tr_G2HGB9_G2HGB9_PANTR_9598 and tr_A0A2R9A6Y1_A0A2R9A6Y1_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6QZW6_F6QZW6_MONDO_13616 and tr_F6UMY0_F6UMY0_MONDO_13616 are exactly identical! WARNING: Sequences tr_A2RAS8_A2RAS8_ASPNC_425011 and tr_G7X943_G7X943_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2RAS8_A2RAS8_ASPNC_425011 and tr_G3YE42_G3YE42_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2RAS8_A2RAS8_ASPNC_425011 and tr_A0A146F6T2_A0A146F6T2_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2RAS8_A2RAS8_ASPNC_425011 and tr_A0A1L9NM45_A0A1L9NM45_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2RAS8_A2RAS8_ASPNC_425011 and tr_A0A317VKA7_A0A317VKA7_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2RAS8_A2RAS8_ASPNC_425011 and tr_A0A319A4J0_A0A319A4J0_9EURO_1450533 are exactly identical! WARNING: Sequences tr_E5SE22_E5SE22_TRISP_6334 and tr_A0A0V0SKW7_A0A0V0SKW7_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SE22_E5SE22_TRISP_6334 and tr_A0A0V1DFE4_A0A0V1DFE4_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SE22_E5SE22_TRISP_6334 and tr_A0A0V0UXU0_A0A0V0UXU0_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SE22_E5SE22_TRISP_6334 and tr_A0A0V1A9Y8_A0A0V1A9Y8_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SE22_E5SE22_TRISP_6334 and tr_A0A0V1NV71_A0A0V1NV71_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SE22_E5SE22_TRISP_6334 and tr_A0A0V0U2P8_A0A0V0U2P8_9BILA_144512 are exactly identical! WARNING: Sequences tr_H0Z8Q4_H0Z8Q4_TAEGU_59729 and tr_A0A218VFB4_A0A218VFB4_9PASE_299123 are exactly identical! WARNING: Sequences tr_G0MF16_G0MF16_CAEBE_135651 and tr_G0P8Q0_G0P8Q0_CAEBE_135651 are exactly identical! WARNING: Sequences tr_G2XTR1_G2XTR1_BOTF4_999810 and tr_M7U9F8_M7U9F8_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_U3CNV1_U3CNV1_CALJA_9483 and tr_A0A2K5KPK0_A0A2K5KPK0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F2Z565_F2Z565_PIG_9823 and tr_G3N3W3_G3N3W3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F2Z565_F2Z565_PIG_9823 and sp_Q8SQH5_ADT2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_E3LUD9_E3LUD9_CAERE_31234 and tr_A0A261BU15_A0A261BU15_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3M3R4_E3M3R4_CAERE_31234 and tr_A0A261BTS9_A0A261BTS9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A5KDI9_A5KDI9_PLAVS_126793 and tr_A5KDT4_A5KDT4_PLAVS_126793 are exactly identical! WARNING: Sequences tr_A8WWJ8_A8WWJ8_CAEBR_6238 and tr_A0A2G5VFQ7_A0A2G5VFQ7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A8XZM1_A8XZM1_CAEBR_6238 and tr_A0A1I7V544_A0A1I7V544_9PELO_1561998 are exactly identical! WARNING: Sequences tr_F2SFR9_F2SFR9_TRIRC_559305 and tr_D4AN07_D4AN07_ARTBC_663331 are exactly identical! WARNING: Sequences tr_F2SFR9_F2SFR9_TRIRC_559305 and tr_A0A178EVR2_A0A178EVR2_TRIRU_5551 are exactly identical! WARNING: Sequences tr_G7P691_G7P691_MACFA_9541 and tr_A0A096MUY6_A0A096MUY6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7P691_G7P691_MACFA_9541 and tr_A0A2K5LRH2_A0A2K5LRH2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7P691_G7P691_MACFA_9541 and tr_A0A2K6BKZ8_A0A2K6BKZ8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7P691_G7P691_MACFA_9541 and tr_A0A2K5ZIC4_A0A2K5ZIC4_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3VW78_M3VW78_FELCA_9685 and tr_A0A2U3V9E9_A0A2U3V9E9_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3VW78_M3VW78_FELCA_9685 and tr_A0A2Y9M939_A0A2Y9M939_DELLE_9749 are exactly identical! WARNING: Sequences tr_U3IXX4_U3IXX4_ANAPL_8839 and tr_A0A0A0AUD8_A0A0A0AUD8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_W2R288_W2R288_PHYPN_761204 and tr_A0A0W8CJS6_A0A0W8CJS6_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2R288_W2R288_PHYPN_761204 and tr_W2IDF1_W2IDF1_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A067C9Y2_A0A067C9Y2_SAPPC_695850 and tr_T0RZN1_T0RZN1_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0F8WTX2_A0A0F8WTX2_9EURO_308745 and tr_A0A2T5LW79_A0A2T5LW79_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0F9Q6_A0A0K0F9Q6_STRVS_75913 and tr_A0A0N5CE97_A0A0N5CE97_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0N4T0P9_A0A0N4T0P9_BRUPA_6280 and tr_A0A0R3QL65_A0A0R3QL65_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0A1NYI3_A0A0A1NYI3_9FUNG_58291 and tr_A0A367JP93_A0A367JP93_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A091EHD1_A0A091EHD1_CORBR_85066 and tr_A0A093PXH0_A0A093PXH0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EHD1_A0A091EHD1_CORBR_85066 and tr_A0A093GFE4_A0A093GFE4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IP52_A0A091IP52_EGRGA_188379 and tr_A0A091UUX1_A0A091UUX1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A087R612_A0A087R612_APTFO_9233 and tr_A0A0A0ATH3_A0A0A0ATH3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_W6YF74_W6YF74_COCCA_930089 and tr_W6Z2E7_W6Z2E7_COCMI_930090 are exactly identical! WARNING: Sequences tr_A0A0V0X7F6_A0A0V0X7F6_9BILA_92179 and tr_A0A0V1L521_A0A0V1L521_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1MW42_A0A0V1MW42_9BILA_268474 and tr_A0A0V1HU50_A0A0V1HU50_9BILA_268475 are exactly identical! WARNING: Sequences tr_B5DGZ0_B5DGZ0_SALSA_8030 and tr_A0A060XJN3_A0A060XJN3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5DGZ1_B5DGZ1_SALSA_8030 and tr_A0A060X1F7_A0A060X1F7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L9X2V4_A0A1L9X2V4_ASPAC_690307 and tr_A0A2V5IIB0_A0A2V5IIB0_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9X2V4_A0A1L9X2V4_ASPAC_690307 and tr_A0A2V5HPT7_A0A2V5HPT7_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1V8SNV6_A0A1V8SNV6_9PEZI_1507870 and tr_A0A1V8SVG8_A0A1V8SVG8_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A226MPW0_A0A226MPW0_CALSU_9009 and tr_A0A226PBH8_A0A226PBH8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NFB4_A0A226NFB4_CALSU_9009 and tr_A0A226PKB5_A0A226PKB5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3V2A5_A0A2U3V2A5_TURTR_9739 and tr_A0A2Y9N0I2_A0A2Y9N0I2_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 90 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235.raxml.reduced.phy Alignment comprises 1 partitions and 298 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 298 Gaps: 3.83 % Invariant sites: 0.34 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/3_mltree/P12235.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 75 / 6000 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -83977.238625 [00:00:00 -83977.238625] Initial branch length optimization [00:00:01 -83614.217925] Model parameter optimization (eps = 0.100000) [00:00:33] Tree #1, final logLikelihood: -83148.266273 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.325198,0.423856) (0.359893,0.721955) (0.217558,1.600712) (0.097352,2.610017) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P12235/4_raxmlng_ancestral/P12235.raxml.log Analysis started: 04-Jun-2021 13:44:00 / finished: 04-Jun-2021 13:44:36 Elapsed time: 36.315 seconds