RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6258R CPU @ 2.70GHz, 56 cores, 187 GB RAM RAxML-NG was called at 04-Jun-2021 03:53:03 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/2_msa/P12111_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/2_msa/P12111_trimmed_msa.fasta [00:00:00] Loaded alignment with 937 taxa and 8 sites WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_A0A0R4IW47_A0A0R4IW47_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_M4AU93_M4AU93_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_I3IUF4_I3IUF4_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_H3CS58_H3CS58_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_G3P656_G3P656_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_W5MK05_W5MK05_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_A0A087XG05_A0A087XG05_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_A0A1S3RAF2_A0A1S3RAF2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_A0A1S3S4V7_A0A1S3S4V7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0R4IN07_A0A0R4IN07_DANRE_7955 and tr_A0A2I4CJ75_A0A2I4CJ75_9TELE_52670 are exactly identical! WARNING: Sequences sp_A0MSJ1_CRA1B_DANRE_7955 and tr_A0A3B1IK56_A0A3B1IK56_ASTMX_7994 are exactly identical! WARNING: Sequences sp_A0MSJ1_CRA1B_DANRE_7955 and tr_A0A2D0PPR4_A0A2D0PPR4_ICTPU_7998 are exactly identical! WARNING: Sequences sp_C7DZK3_CRA1A_DANRE_7955 and tr_A0A2D0T194_A0A2D0T194_ICTPU_7998 are exactly identical! WARNING: Sequences tr_E7FG81_E7FG81_DANRE_7955 and tr_I3KR38_I3KR38_ORENI_8128 are exactly identical! WARNING: Sequences tr_E7FG81_E7FG81_DANRE_7955 and tr_G3PDH7_G3PDH7_GASAC_69293 are exactly identical! WARNING: Sequences tr_E7FG81_E7FG81_DANRE_7955 and tr_F7AHZ4_F7AHZ4_XENTR_8364 are exactly identical! WARNING: Sequences tr_E7FG81_E7FG81_DANRE_7955 and tr_A0A1S3M8Z3_A0A1S3M8Z3_SALSA_8030 are exactly identical! WARNING: Sequences tr_E7FG81_E7FG81_DANRE_7955 and tr_A0A2I4BFW9_A0A2I4BFW9_9TELE_52670 are exactly identical! WARNING: Sequences tr_E7FG81_E7FG81_DANRE_7955 and tr_A0A2I4C034_A0A2I4C034_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A3B5PSU4_A0A3B5PSU4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_I3JJM1_I3JJM1_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_K7FM26_K7FM26_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_G3P5E3_G3P5E3_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_H0ZQ71_H0ZQ71_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_U3JIB0_U3JIB0_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_W5KZ93_W5KZ93_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_W5MS60_W5MS60_LEPOC_7918 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A087XCU1_A0A087XCU1_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A0P7VX91_A0A0P7VX91_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A0Q3R9X9_A0A0Q3R9X9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A091F9E1_A0A091F9E1_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A091J1J8_A0A091J1J8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A091VK97_A0A091VK97_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A087QY21_A0A087QY21_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A093GUD2_A0A093GUD2_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A099Z0N6_A0A099Z0N6_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A091GKX1_A0A091GKX1_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A0A0A937_A0A0A0A937_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A2I0MXE9_A0A2I0MXE9_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A091HPX5_A0A091HPX5_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A1V4KHI2_A0A1V4KHI2_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A2I4CMR1_A0A2I4CMR1_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A218VEM6_A0A218VEM6_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A226N231_A0A226N231_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A226PTZ7_A0A226PTZ7_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A2D0R7E9_A0A2D0R7E9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A2D0R7G8_A0A2D0R7G8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A2D0R8Z6_A0A2D0R8Z6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1R9Y1_F1R9Y1_DANRE_7955 and tr_A0A2D0R9P3_A0A2D0R9P3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_I3ISS1_I3ISS1_DANRE_7955 and tr_H2SLM8_H2SLM8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3ISS1_I3ISS1_DANRE_7955 and tr_A0A1S3M1W6_A0A1S3M1W6_SALSA_8030 are exactly identical! WARNING: Sequences tr_I3ISS1_I3ISS1_DANRE_7955 and tr_A0A1S3PYN1_A0A1S3PYN1_SALSA_8030 are exactly identical! WARNING: Sequences tr_I3ISS1_I3ISS1_DANRE_7955 and tr_A0A060WRV2_A0A060WRV2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_M3XPR6_M3XPR6_MUSPF_9669 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_H2MSC0_H2MSC0_ORYLA_8090 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_E2RT85_E2RT85_CANLF_9615 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_M3ZDJ3_M3ZDJ3_XIPMA_8083 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_M4A8S4_M4A8S4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_I3JIA7_I3JIA7_ORENI_8128 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_K7GT00_K7GT00_PIG_9823 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_G1L612_G1L612_AILME_9646 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A337RZD5_A0A337RZD5_FELCA_9685 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_W5LGT3_W5LGT3_ASTMX_7994 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_W5NJS9_W5NJS9_LEPOC_7918 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A087XZQ0_A0A087XZQ0_POEFO_48698 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A0P7W0I6_A0A0P7W0I6_9TELE_113540 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A0P7YD20_A0A0P7YD20_9TELE_113540 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A151MXS0_A0A151MXS0_ALLMI_8496 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A093GPW6_A0A093GPW6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A1S3MK17_A0A1S3MK17_SALSA_8030 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A1S3MP34_A0A1S3MP34_SALSA_8030 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A1S3SN90_A0A1S3SN90_SALSA_8030 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A3Q0GV08_A0A3Q0GV08_ALLSI_38654 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A2I4CEE1_A0A2I4CEE1_9TELE_52670 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A060WXV0_A0A060WXV0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A060XAB2_A0A060XAB2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A2D0SC43_A0A2D0SC43_ICTPU_7998 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A2Y9JBV1_A0A2Y9JBV1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_X1WF98_X1WF98_DANRE_7955 and tr_A0A384BZE0_A0A384BZE0_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and sp_P13944_COCA1_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_G1NM15_G1NM15_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_G1KDU5_G1KDU5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_K7FGW4_K7FGW4_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_H0ZQY6_H0ZQY6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_U3J0G6_U3J0G6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A151MU99_A0A151MU99_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A0Q3RSX7_A0A0Q3RSX7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A091EKV2_A0A091EKV2_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A093Q141_A0A093Q141_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A087QVB3_A0A087QVB3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A093KEH7_A0A093KEH7_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A091VDM0_A0A091VDM0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A099Z557_A0A099Z557_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A2I0MTP6_A0A2I0MTP6_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A091HRB0_A0A091HRB0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A1L8G3J5_A0A1L8G3J5_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A3Q0GBR1_A0A3Q0GBR1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A1V4JMX7_A0A1V4JMX7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A218UWH7_A0A218UWH7_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1L1RPW4_A0A1L1RPW4_CHICK_9031 and tr_A0A226NS53_A0A226NS53_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BU12_E1BU12_CHICK_9031 and tr_H0ZRG5_H0ZRG5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1BU12_E1BU12_CHICK_9031 and tr_U3JGJ3_U3JGJ3_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1BU12_E1BU12_CHICK_9031 and tr_U3I6S9_U3I6S9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BU12_E1BU12_CHICK_9031 and tr_A0A093G0U4_A0A093G0U4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BU12_E1BU12_CHICK_9031 and tr_A0A1V4JMN6_A0A1V4JMN6_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and sp_Q923P0_COKA1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_U3IHX3_U3IHX3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A091JJB5_A0A091JJB5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A093RXL8_A0A093RXL8_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A091WZL2_A0A091WZL2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A087QRQ4_A0A087QRQ4_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A093GRI3_A0A093GRI3_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A091W4Z7_A0A091W4Z7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A091G581_A0A091G581_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A0A0B2P5_A0A0A0B2P5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A2I0M632_A0A2I0M632_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A093G7R8_A0A093G7R8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A1S3GC35_A0A1S3GC35_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A3Q0CXL1_A0A3Q0CXL1_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A1V4KKK5_A0A1V4KKK5_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A226NJI2_A0A226NJI2_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NAB9_F1NAB9_CHICK_9031 and tr_A0A226PFL6_A0A226PFL6_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NDC7_F1NDC7_CHICK_9031 and tr_G1NIA0_G1NIA0_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NDC7_F1NDC7_CHICK_9031 and tr_U3HYL8_U3HYL8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_G1NDD2_G1NDD2_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_K7FJF0_K7FJF0_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_H0ZBU7_H0ZBU7_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_F6TWH3_F6TWH3_XENTR_8364 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_U3JDT1_U3JDT1_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_U3II46_U3II46_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_A0A151M040_A0A151M040_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_A0A0Q3R8X5_A0A0Q3R8X5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_A0A091FEG1_A0A091FEG1_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_A0A091VYE3_A0A091VYE3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_A0A1L8EW48_A0A1L8EW48_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1NSR4_F1NSR4_CHICK_9031 and tr_A0A1U8DGE3_A0A1U8DGE3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and sp_P15989_CO6A3_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_E9PWQ3_E9PWQ3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G1RJF0_G1RJF0_NOMLE_61853 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G1P7V7_G1P7V7_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G3IN53_G3IN53_CRIGR_10029 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G3QJ50_G3QJ50_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_H2P914_H2P914_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G3USK9_G3USK9_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_F1PR31_F1PR31_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_H2QJP2_H2QJP2_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_F6R6T3_F6R6T3_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_F7DAY0_F7DAY0_MONDO_13616 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_F6R735_F6R735_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_H0XEJ5_H0XEJ5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and sp_P12111_CO6A3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_F7AG99_F7AG99_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G5AY50_G5AY50_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G3W9A1_G3W9A1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_H0YZY4_H0YZY4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_F6XJ88_F6XJ88_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G1LP52_G1LP52_AILME_9646 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_G7PKD2_G7PKD2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_L5KT32_L5KT32_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_U3KE50_U3KE50_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_U3ID88_U3ID88_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A096MTH6_A0A096MTH6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A091EB10_A0A091EB10_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A0D9R1F2_A0A0D9R1F2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A151NAB7_A0A151NAB7_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A0Q3T0F6_A0A0Q3T0F6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A091E7T2_A0A091E7T2_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A2I0MIU2_A0A2I0MIU2_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A093GEJ3_A0A093GEJ3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A1U7TBZ0_A0A1U7TBZ0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A1U7SAT2_A0A1U7SAT2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A1V4K7A6_A0A1V4K7A6_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A218UJH8_A0A218UJH8_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A226N306_A0A226N306_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A226NVW8_A0A226NVW8_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A2K5MPQ0_A0A2K5MPQ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A2K6CRS0_A0A2K6CRS0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A2K5Y9T7_A0A2K5Y9T7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A2Y9RNH1_A0A2Y9RNH1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A2Y9IWV7_A0A2Y9IWV7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1P2F0_F1P2F0_CHICK_9031 and tr_A0A384C2X5_A0A384C2X5_URSMA_29073 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_G1P5G4_G1P5G4_MYOLU_59463 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_F1PJH4_F1PJH4_CANLF_9615 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_F1M6H4_F1M6H4_RAT_10116 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_I3MWT8_I3MWT8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_H0XP18_H0XP18_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_G3TZ74_G3TZ74_LOXAF_9785 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_L5KZZ7_L5KZZ7_PTEAL_9402 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A0D9RCT6_A0A0D9RCT6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A3Q0CYS9_A0A3Q0CYS9_MESAU_10036 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A2K6BUT8_A0A2K6BUT8_MACNE_9545 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A2U3ZPK8_A0A2U3ZPK8_ODORO_9708 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A2U3YH38_A0A2U3YH38_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A2Y9RTQ9_A0A2Y9RTQ9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A2Y9KB01_A0A2Y9KB01_ENHLU_391180 are exactly identical! WARNING: Sequences sp_A2AX52_CO6A4_MOUSE_10090 and tr_A0A384DRE6_A0A384DRE6_URSMA_29073 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G1QMV0_G1QMV0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G1QN64_G1QN64_NOMLE_61853 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G1QAL4_G1QAL4_MYOLU_59463 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G3QCS7_G3QCS7_GORGO_9595 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G3QUY9_G3QUY9_GORGO_9595 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G1SHP2_G1SHP2_RABIT_9986 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G1TUH4_G1TUH4_RABIT_9986 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_F1Q2F7_F1Q2F7_CANLF_9615 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_H2QND2_H2QND2_PANTR_9598 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_H2QND3_H2QND3_PANTR_9598 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_F6QHY2_F6QHY2_HORSE_9796 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_W5PZB9_W5PZB9_SHEEP_9940 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_W5PZR5_W5PZR5_SHEEP_9940 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A0G2JTX7_A0A0G2JTX7_RAT_10116 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_H0XLW4_H0XLW4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_H0VAA9_H0VAA9_CAVPO_10141 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and sp_A6NMZ7_CO6A6_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and sp_A8TX70_CO6A5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A1D5RDG7_A0A1D5RDG7_MACMU_9544 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_F6UGC1_F6UGC1_MACMU_9544 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G3TZ81_G3TZ81_LOXAF_9785 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G3W4P0_G3W4P0_SARHA_9305 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_F7F5Z3_F7F5Z3_CALJA_9483 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A287A0A6_A0A287A0A6_PIG_9823 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G1LDX5_G1LDX5_AILME_9646 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_G7NY04_G7NY04_MACFA_9541 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_F1MD40_F1MD40_BOVIN_9913 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A337SG51_A0A337SG51_FELCA_9685 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A096N9M9_A0A096N9M9_PAPAN_9555 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A096NA42_A0A096NA42_PAPAN_9555 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A0D9RCU7_A0A0D9RCU7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A0D9RD88_A0A0D9RD88_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A1S3A6M5_A0A1S3A6M5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A3Q0CY20_A0A3Q0CY20_MESAU_10036 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2K5NJY7_A0A2K5NJY7_CERAT_9531 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2K6B911_A0A2K6B911_MACNE_9545 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2K6E5E8_A0A2K6E5E8_MACNE_9545 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2K5XYG8_A0A2K5XYG8_MANLE_9568 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2R8ZMQ4_A0A2R8ZMQ4_PANPA_9597 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2R9BJ46_A0A2R9BJ46_PANPA_9597 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2U4B8R3_A0A2U4B8R3_TURTR_9739 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2U3WJY7_A0A2U3WJY7_ODORO_9708 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2U3YHD9_A0A2U3YHD9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A2Y9FDK6_A0A2Y9FDK6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A384DJ23_A0A384DJ23_URSMA_29073 are exactly identical! WARNING: Sequences sp_A6H584_CO6A5_MOUSE_10090 and tr_A0A383YW70_A0A383YW70_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q30D77_COOA1_MOUSE_10090 and tr_H0X3U9_H0X3U9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q30D77_COOA1_MOUSE_10090 and tr_A0A2U4A134_A0A2U4A134_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q30D77_COOA1_MOUSE_10090 and tr_A0A2Y9P028_A0A2Y9P028_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_G1QYG6_G1QYG6_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_G3S125_G3S125_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_H2PJL6_H2PJL6_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_G1T994_G1T994_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_H2QTA4_H2QTA4_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_F6QD89_F6QD89_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_W5P8W6_W5P8W6_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_I3M0L4_I3M0L4_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_H0XDW0_H0XDW0_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and sp_Q99715_COCA1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A1D5Q4K0_A0A1D5Q4K0_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_F7H0A7_F7H0A7_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_F1RQI0_F1RQI0_PIG_9823 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_G7P3G5_G7P3G5_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_F1N401_F1N401_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2I3MFY7_A0A2I3MFY7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A0D9RNM7_A0A0D9RNM7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A1S3GL12_A0A1S3GL12_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A1U7QV79_A0A1U7QV79_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2K5P5K0_A0A2K5P5K0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2K6DG14_A0A2K6DG14_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2K5ZDS6_A0A2K5ZDS6_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2R9CM08_A0A2R9CM08_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2U4AV69_A0A2U4AV69_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2Y9EAP0_A0A2Y9EAP0_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2Y9PSZ7_A0A2Y9PSZ7_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A2Y9EIB7_A0A2Y9EIB7_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q60847_COCA1_MOUSE_10090 and tr_A0A383YZ21_A0A383YZ21_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q80X19_COEA1_MOUSE_10090 and tr_D3ZZT9_D3ZZT9_RAT_10116 are exactly identical! WARNING: Sequences sp_Q80X19_COEA1_MOUSE_10090 and tr_A0A286XTG1_A0A286XTG1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_G1QSI7_G1QSI7_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_G1P2A9_G1P2A9_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_G3SKQ7_G3SKQ7_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_H2PJF7_H2PJF7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_E2RIU7_E2RIU7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_H2QT85_H2QT85_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_F7ADL7_F7ADL7_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_I3N5Q3_I3N5Q3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_H0X8I3_H0X8I3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_H0W959_H0W959_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and sp_Q96P44_COLA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_F7FYZ2_F7FYZ2_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_G1LJ22_G1LJ22_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_M3WXB0_M3WXB0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A096N2S0_A0A096N2S0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A091DLZ3_A0A091DLZ3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A0D9RLE0_A0A0D9RLE0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A1S3W333_A0A1S3W333_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2K5M5S7_A0A2K5M5S7_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2K6CSK8_A0A2K6CSK8_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2K5ZT07_A0A2K5ZT07_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2U4B1B6_A0A2U4B1B6_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2U3W3C5_A0A2U3W3C5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2U3X9P7_A0A2U3X9P7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2Y9E5P8_A0A2Y9E5P8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2Y9JZB3_A0A2Y9JZB3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A2Y9NT78_A0A2Y9NT78_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XUG5_M3XUG5_MUSPF_9669 and tr_A0A384C518_A0A384C518_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_J9P6G0_J9P6G0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_G1M7A5_G1M7A5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_M3XED7_M3XED7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_A0A2U3ZLY5_A0A2U3ZLY5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_A0A2U3XB75_A0A2U3XB75_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_A0A2Y9JZ32_A0A2Y9JZ32_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XYD6_M3XYD6_MUSPF_9669 and tr_A0A384BKN3_A0A384BKN3_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y3Q4_M3Y3Q4_MUSPF_9669 and tr_A0A2Y9KAY0_A0A2Y9KAY0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_G1S211_G1S211_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_G3SFN7_G3SFN7_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_H2R8V5_H2R8V5_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_F6TL84_F6TL84_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_W5PK55_W5PK55_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_F1M095_F1M095_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_H0WZ25_H0WZ25_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_H0VKU3_H0VKU3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and sp_Q6UXI7_VITRN_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_F7BUH6_F7BUH6_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_G3WFA6_G3WFA6_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_F1S4N8_F1S4N8_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_G7PM07_G7PM07_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_F1MER4_F1MER4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and sp_Q95LI2_VITRN_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A096NR57_A0A096NR57_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A091CRB7_A0A091CRB7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A0D9RHJ3_A0A0D9RHJ3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A3Q0CW45_A0A3Q0CW45_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2K5KKP1_A0A2K5KKP1_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2K6DZZ4_A0A2K6DZZ4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2K5YRS9_A0A2K5YRS9_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2R9BC08_A0A2R9BC08_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2U4BZB7_A0A2U4BZB7_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2U3ZQC4_A0A2U3ZQC4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2Y9NA51_A0A2Y9NA51_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A2Y9SFW5_A0A2Y9SFW5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A384CUL3_A0A384CUL3_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YF73_M3YF73_MUSPF_9669 and tr_A0A384AWI8_A0A384AWI8_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A3B3I918_A0A3B3I918_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_G3N9W9_G3N9W9_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A1S3NVS8_A0A1S3NVS8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A1S3PL33_A0A1S3PL33_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A1S3PM55_A0A1S3PM55_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A1S3QXT2_A0A1S3QXT2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A1S3QZ60_A0A1S3QZ60_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3I0P9_A0A3B3I0P9_ORYLA_8090 and tr_A0A060VQZ6_A0A060VQZ6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B3IC36_A0A3B3IC36_ORYLA_8090 and tr_A0A096LQS6_A0A096LQS6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3IC36_A0A3B3IC36_ORYLA_8090 and tr_A0A1L8GGG2_A0A1L8GGG2_XENLA_8355 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_A0A3B5PZS4_A0A3B5PZS4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_I3IZI7_I3IZI7_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_H2SCF9_H2SCF9_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_G3NJQ6_G3NJQ6_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_W5L035_W5L035_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_A0A087YNF7_A0A087YNF7_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2L989_H2L989_ORYLA_8090 and tr_A0A0P7YKH5_A0A0P7YKH5_9TELE_113540 are exactly identical! WARNING: Sequences tr_H2LQ52_H2LQ52_ORYLA_8090 and tr_A0A1U8DDV7_A0A1U8DDV7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H2LW08_H2LW08_ORYLA_8090 and tr_A0A1L8FRP3_A0A1L8FRP3_XENLA_8355 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_I3KEZ4_I3KEZ4_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_A0A286XF06_A0A286XF06_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_A0A087YBL8_A0A087YBL8_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_A0A2I4B9H7_A0A2I4B9H7_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_A0A2Y9EVD7_A0A2Y9EVD7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_A0A384DN66_A0A384DN66_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2M7Y4_H2M7Y4_ORYLA_8090 and tr_A0A383ZC41_A0A383ZC41_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_G3QM74_G3QM74_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and sp_P12110_CO6A2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_F6XD59_F6XD59_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A096NI97_A0A096NI97_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A0D9R4H0_A0A0D9R4H0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A3Q0CQZ0_A0A3Q0CQZ0_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A2K5NK39_A0A2K5NK39_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A2K6CKR7_A0A2K6CKR7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A2K5XKZ9_A0A2K5XKZ9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QQN4_G1QQN4_NOMLE_61853 and tr_A0A2R9A7P8_A0A2R9A7P8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_G1PED6_G1PED6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2I2YFM7_A0A2I2YFM7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_H2PR37_H2PR37_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_G1T933_G1T933_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2I3S4E5_A0A2I3S4E5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_F6ZNX3_F6ZNX3_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_I3NDZ1_I3NDZ1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_H0XAW8_H0XAW8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_H2U2V1_H2U2V1_TAKRU_31033 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and sp_Q05707_COEA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_F7HQD8_F7HQD8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_G5C9Q9_G5C9Q9_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_H3CW86_H3CW86_TETNG_99883 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2R8MDE3_A0A2R8MDE3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_G7PCQ7_G7PCQ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_L5KDL1_L5KDL1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2I3M793_A0A2I3M793_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A0D9REB8_A0A0D9REB8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A1S2ZXX4_A0A1S2ZXX4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A1S3GHH2_A0A1S3GHH2_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A3Q0E185_A0A3Q0E185_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A3Q0DBF0_A0A3Q0DBF0_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2K5KXA8_A0A2K5KXA8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2K6CB99_A0A2K6CB99_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2K5YVX9_A0A2K5YVX9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2R9CHZ0_A0A2R9CHZ0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2U4B343_A0A2U4B343_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2U3YYZ5_A0A2U3YYZ5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2Y9QX64_A0A2Y9QX64_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2Y9LWB6_A0A2Y9LWB6_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A2Y9T2G7_A0A2Y9T2G7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1QZ24_G1QZ24_NOMLE_61853 and tr_A0A384AND6_A0A384AND6_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_G3QW83_G3QW83_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_H2PAU2_H2PAU2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_H2QMJ5_H2QMJ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_H0XB29_H0XB29_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and sp_Q02388_CO7A1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_G1L2G7_G1L2G7_AILME_9646 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_G8F312_G8F312_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A096NRK5_A0A096NRK5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A0D9RSP0_A0A0D9RSP0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A1U7U8G2_A0A1U7U8G2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A2K6DXC3_A0A2K6DXC3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A2K5YZK9_A0A2K5YZK9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A2R9AJ42_A0A2R9AJ42_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A2Y9NI38_A0A2Y9NI38_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1R470_G1R470_NOMLE_61853 and tr_A0A2Y9SSZ2_A0A2Y9SSZ2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_G1PE75_G1PE75_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_G3QDU7_G3QDU7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_H2N6W1_H2N6W1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A2I3RU50_A0A2I3RU50_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_W5PYK1_W5PYK1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_I3MDN7_I3MDN7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_H0UVT7_H0UVT7_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and sp_Q17RW2_COOA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_F7BJ95_F7BJ95_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_G7NTL3_G7NTL3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A096NXN5_A0A096NXN5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A0D9S6V0_A0A0D9S6V0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A2K5N754_A0A2K5N754_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A2K6D175_A0A2K6D175_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A2K5XAR4_A0A2K5XAR4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A2R9AJT8_A0A2R9AJT8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RGI9_G1RGI9_NOMLE_61853 and tr_A0A2Y9D7F8_A0A2Y9D7F8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1PCH6_G1PCH6_MYOLU_59463 and tr_L5KRP4_L5KRP4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_K7G0X4_K7G0X4_PELSI_13735 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_H0ZAW9_H0ZAW9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_L5JY92_L5JY92_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_U3K796_U3K796_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_A0A091E4J0_A0A091E4J0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_A0A151NYK8_A0A151NYK8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_A0A0Q3VBM4_A0A0Q3VBM4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_A0A091E533_A0A091E533_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_A0A3Q0GDA2_A0A3Q0GDA2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1PGP5_G1PGP5_MYOLU_59463 and tr_A0A218URZ0_A0A218URZ0_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_E2R0D7_E2R0D7_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_F7IJ63_F7IJ63_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_G1LDU4_G1LDU4_AILME_9646 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_M3WIZ5_M3WIZ5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_A0A1S3G4C9_A0A1S3G4C9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_A0A1U7UCZ0_A0A1U7UCZ0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_A0A2U3X0I2_A0A2U3X0I2_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_A0A2Y9KB27_A0A2Y9KB27_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1PS73_G1PS73_MYOLU_59463 and tr_A0A384DS66_A0A384DS66_URSMA_29073 are exactly identical! WARNING: Sequences tr_A9V8A7_A9V8A7_MONBE_81824 and tr_A0A2B4SR81_A0A2B4SR81_STYPI_50429 are exactly identical! WARNING: Sequences tr_C3YQB2_C3YQB2_BRAFL_7739 and tr_C3YQB3_C3YQB3_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YQB2_C3YQB2_BRAFL_7739 and tr_C3ZCZ7_C3ZCZ7_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3ZHU6_C3ZHU6_BRAFL_7739 and tr_A0A2R2MS53_A0A2R2MS53_LINUN_7574 are exactly identical! WARNING: Sequences tr_C3ZHU6_C3ZHU6_BRAFL_7739 and tr_A0A1S3QZQ5_A0A1S3QZQ5_SALSA_8030 are exactly identical! WARNING: Sequences tr_C3ZHU6_C3ZHU6_BRAFL_7739 and tr_A0A1S3R495_A0A1S3R495_SALSA_8030 are exactly identical! WARNING: Sequences tr_C3ZHU6_C3ZHU6_BRAFL_7739 and tr_A0A2G5IF40_A0A2G5IF40_CERBT_122368 are exactly identical! WARNING: Sequences tr_G1N9M9_G1N9M9_MELGA_9103 and tr_I3JX02_I3JX02_ORENI_8128 are exactly identical! WARNING: Sequences tr_G1N9M9_G1N9M9_MELGA_9103 and tr_A0A093PSA6_A0A093PSA6_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1N9M9_G1N9M9_MELGA_9103 and tr_A0A093GJZ5_A0A093GJZ5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1N9M9_G1N9M9_MELGA_9103 and tr_A0A1V4JYT9_A0A1V4JYT9_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1N9M9_G1N9M9_MELGA_9103 and tr_A0A218VFY8_A0A218VFY8_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1KAQ5_G1KAQ5_ANOCA_28377 and tr_A0A151MR48_A0A151MR48_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1KAQ5_G1KAQ5_ANOCA_28377 and tr_A0A1U8DW70_A0A1U8DW70_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1KEN6_G1KEN6_ANOCA_28377 and tr_W5PNP3_W5PNP3_SHEEP_9940 are exactly identical! WARNING: Sequences tr_H9GEY2_H9GEY2_ANOCA_28377 and tr_H9GGJ0_H9GGJ0_ANOCA_28377 are exactly identical! WARNING: Sequences tr_H9GLU4_H9GLU4_ANOCA_28377 and tr_A0A2I0MIG7_A0A2I0MIG7_COLLI_8932 are exactly identical! WARNING: Sequences tr_H9GLU4_H9GLU4_ANOCA_28377 and tr_A0A1V4K6R7_A0A1V4K6R7_PATFA_372326 are exactly identical! WARNING: Sequences tr_H9GNN3_H9GNN3_ANOCA_28377 and tr_F6S2L9_F6S2L9_HORSE_9796 are exactly identical! WARNING: Sequences tr_H9GNN3_H9GNN3_ANOCA_28377 and tr_W5P879_W5P879_SHEEP_9940 are exactly identical! WARNING: Sequences tr_H9GNN3_H9GNN3_ANOCA_28377 and tr_A0A2Y9ESX8_A0A2Y9ESX8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H9GNN3_H9GNN3_ANOCA_28377 and tr_A0A384AI67_A0A384AI67_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1SM53_G1SM53_RABIT_9986 and tr_H0XFJ4_H0XFJ4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1TZK2_G1TZK2_RABIT_9986 and tr_J9NV06_J9NV06_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1TZK2_G1TZK2_RABIT_9986 and tr_A0A287BG85_A0A287BG85_PIG_9823 are exactly identical! WARNING: Sequences tr_G1TZK2_G1TZK2_RABIT_9986 and tr_G1MD66_G1MD66_AILME_9646 are exactly identical! WARNING: Sequences tr_G1TZK2_G1TZK2_RABIT_9986 and tr_A0A1U7TU72_A0A1U7TU72_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1TZK2_G1TZK2_RABIT_9986 and tr_A0A2Y9JDB9_A0A2Y9JDB9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1TZK2_G1TZK2_RABIT_9986 and tr_A0A384BPI6_A0A384BPI6_URSMA_29073 are exactly identical! WARNING: Sequences tr_E2R8U5_E2R8U5_CANLF_9615 and tr_G1MFQ9_G1MFQ9_AILME_9646 are exactly identical! WARNING: Sequences tr_E2R8U5_E2R8U5_CANLF_9615 and tr_A0A2U3WVL5_A0A2U3WVL5_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2R8U5_E2R8U5_CANLF_9615 and tr_A0A384C3N2_A0A384C3N2_URSMA_29073 are exactly identical! WARNING: Sequences tr_F7C498_F7C498_ORNAN_9258 and tr_F7A5C3_F7A5C3_MONDO_13616 are exactly identical! WARNING: Sequences tr_F7AGY1_F7AGY1_MONDO_13616 and tr_U3JIL1_U3JIL1_FICAL_59894 are exactly identical! WARNING: Sequences tr_F7EVM1_F7EVM1_MONDO_13616 and tr_G3X1N9_G3X1N9_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_G3PLP6_G3PLP6_GASAC_69293 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_F6QCI1_F6QCI1_XENTR_8364 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_A0A0P7V998_A0A0P7V998_9TELE_113540 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_A0A151MF97_A0A151MF97_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_A0A1S3KJ82_A0A1S3KJ82_SALSA_8030 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_A0A1L8F1K7_A0A1L8F1K7_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7FYR1_F7FYR1_MONDO_13616 and tr_A0A1U7S1Y9_A0A1U7S1Y9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_F1MKG2_F1MKG2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_L5JX12_L5JX12_PTEAL_9402 are exactly identical! WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_A0A2Y9Q511_A0A2Y9Q511_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_A0A2Y9FH40_A0A2Y9FH40_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PTN6_W5PTN6_SHEEP_9940 and tr_A0A383ZCJ7_A0A383ZCJ7_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5Q5Q6_W5Q5Q6_SHEEP_9940 and tr_G3TAG1_G3TAG1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_W5Q5Q6_W5Q5Q6_SHEEP_9940 and tr_E1BA17_E1BA17_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5Q5Q6_W5Q5Q6_SHEEP_9940 and tr_A0A091DSV7_A0A091DSV7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_W5Q5Q6_W5Q5Q6_SHEEP_9940 and tr_A0A2U3WSW7_A0A2U3WSW7_ODORO_9708 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_I3LUR7_I3LUR7_PIG_9823 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_E1BB91_E1BB91_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_M3WHG4_M3WHG4_FELCA_9685 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_A0A1S3ESA1_A0A1S3ESA1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_A0A2U4ADX4_A0A2U4ADX4_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_A0A2U3YRY2_A0A2U3YRY2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_A0A2Y9MP76_A0A2Y9MP76_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_A0A2Y9F4S9_A0A2Y9F4S9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5QCP9_W5QCP9_SHEEP_9940 and tr_A0A384AC76_A0A384AC76_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q80ZF0_CORA1_RAT_10116 and tr_A0A1U8BZC0_A0A1U8BZC0_MESAU_10036 are exactly identical! WARNING: Sequences tr_M4AHL7_M4AHL7_XIPMA_8083 and tr_A0A087Y1C0_A0A087Y1C0_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3JKF4_I3JKF4_ORENI_8128 and tr_H3DN35_H3DN35_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3JQB3_I3JQB3_ORENI_8128 and tr_H3DHP4_H3DHP4_TETNG_99883 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A286XTB4_A0A286XTB4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_G5AM64_G5AM64_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_G3SUU4_G3SUU4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A1U7URM9_A0A1U7URM9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A2U4B955_A0A2U4B955_TURTR_9739 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A2Y9G0S5_A0A2Y9G0S5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A2Y9M5S7_A0A2Y9M5S7_DELLE_9749 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A2Y9F759_A0A2Y9F759_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H0WX40_H0WX40_OTOGA_30611 and tr_A0A383YVZ5_A0A383YVZ5_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2SA86_H2SA86_TAKRU_31033 and tr_G3NFI8_G3NFI8_GASAC_69293 are exactly identical! WARNING: Sequences tr_G5ALT9_G5ALT9_HETGA_10181 and tr_A0A091DVF5_A0A091DVF5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_W4XP34_W4XP34_STRPU_7668 and tr_W4ZCX2_W4ZCX2_STRPU_7668 are exactly identical! WARNING: Sequences tr_K7G0Q2_K7G0Q2_PELSI_13735 and tr_A0A087XI73_A0A087XI73_POEFO_48698 are exactly identical! WARNING: Sequences tr_K7G0Q2_K7G0Q2_PELSI_13735 and tr_A0A1S3KJS6_A0A1S3KJS6_SALSA_8030 are exactly identical! WARNING: Sequences tr_K7G0Q2_K7G0Q2_PELSI_13735 and tr_A0A1S3P9V3_A0A1S3P9V3_SALSA_8030 are exactly identical! WARNING: Sequences tr_K7G0Q2_K7G0Q2_PELSI_13735 and tr_A0A2I4CFQ8_A0A2I4CFQ8_9TELE_52670 are exactly identical! WARNING: Sequences tr_K7GCX1_K7GCX1_PELSI_13735 and tr_K7GI58_K7GI58_PELSI_13735 are exactly identical! WARNING: Sequences tr_K7GCX1_K7GCX1_PELSI_13735 and tr_A0A1U7SXW4_A0A1U7SXW4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G3NF26_G3NF26_GASAC_69293 and tr_A0A2I0MQQ1_A0A2I0MQQ1_COLLI_8932 are exactly identical! WARNING: Sequences tr_G3VTU0_G3VTU0_SARHA_9305 and tr_A0A1S2ZAF3_A0A1S2ZAF3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3W4B8_G3W4B8_SARHA_9305 and tr_H3AVL4_H3AVL4_LATCH_7897 are exactly identical! WARNING: Sequences tr_G3W4B8_G3W4B8_SARHA_9305 and tr_W5KLG4_W5KLG4_ASTMX_7994 are exactly identical! WARNING: Sequences tr_G3W4B8_G3W4B8_SARHA_9305 and tr_W5MTV8_W5MTV8_LEPOC_7918 are exactly identical! WARNING: Sequences tr_G3W4B8_G3W4B8_SARHA_9305 and tr_A0A1S3QV60_A0A1S3QV60_SALSA_8030 are exactly identical! WARNING: Sequences tr_G3W4B8_G3W4B8_SARHA_9305 and tr_W5UTL9_W5UTL9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H0YYY6_H0YYY6_TAEGU_59729 and tr_U3JN24_U3JN24_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YYY6_H0YYY6_TAEGU_59729 and tr_A0A091IY83_A0A091IY83_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0YYY6_H0YYY6_TAEGU_59729 and tr_A0A091UT92_A0A091UT92_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0YYY6_H0YYY6_TAEGU_59729 and tr_A0A091V7H5_A0A091V7H5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0YYY6_H0YYY6_TAEGU_59729 and tr_A0A093GAZ5_A0A093GAZ5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1B8Y7C9_A0A1B8Y7C9_XENTR_8364 and tr_F6U034_F6U034_XENTR_8364 are exactly identical! WARNING: Sequences tr_F6YHV0_F6YHV0_XENTR_8364 and tr_A0A1L8EPH6_A0A1L8EPH6_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6YHV0_F6YHV0_XENTR_8364 and tr_A0A1L8EPJ6_A0A1L8EPJ6_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6YHV0_F6YHV0_XENTR_8364 and tr_A0A1L8EWL1_A0A1L8EWL1_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7AX89_F7AX89_XENTR_8364 and tr_A0A1L8FWI0_A0A1L8FWI0_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7E9E4_F7E9E4_XENTR_8364 and tr_A0A1L8EPE2_A0A1L8EPE2_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7E9E4_F7E9E4_XENTR_8364 and tr_A0A1L8EWI9_A0A1L8EWI9_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7E9E4_F7E9E4_XENTR_8364 and tr_A0A1U7RQ83_A0A1U7RQ83_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F7ENA1_F7ENA1_XENTR_8364 and tr_W5MVA0_W5MVA0_LEPOC_7918 are exactly identical! WARNING: Sequences tr_H3A0C7_H3A0C7_LATCH_7897 and tr_W5M0R9_W5M0R9_LEPOC_7918 are exactly identical! WARNING: Sequences tr_H3A9H4_H3A9H4_LATCH_7897 and tr_U3JJF8_U3JJF8_FICAL_59894 are exactly identical! WARNING: Sequences tr_H3A9H4_H3A9H4_LATCH_7897 and tr_A0A2I0MW54_A0A2I0MW54_COLLI_8932 are exactly identical! WARNING: Sequences tr_H3A9H4_H3A9H4_LATCH_7897 and tr_A0A226NTZ2_A0A226NTZ2_COLVI_9014 are exactly identical! WARNING: Sequences tr_G1M2E4_G1M2E4_AILME_9646 and tr_A0A337SDX6_A0A337SDX6_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1M2E4_G1M2E4_AILME_9646 and tr_A0A1S3G9R3_A0A1S3G9R3_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1M2E4_G1M2E4_AILME_9646 and tr_A0A2U4C8Y9_A0A2U4C8Y9_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1M2E4_G1M2E4_AILME_9646 and tr_A0A2Y9JCL8_A0A2Y9JCL8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1M2E4_G1M2E4_AILME_9646 and tr_A0A2Y9NP49_A0A2Y9NP49_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1M2E4_G1M2E4_AILME_9646 and tr_A0A383ZTA3_A0A383ZTA3_BALAS_310752 are exactly identical! WARNING: Sequences tr_G7P043_G7P043_MACFA_9541 and tr_A0A0D9R4H5_A0A0D9R4H5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2UVY3_A0A2I2UVY3_FELCA_9685 and tr_A0A091D7D4_A0A091D7D4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A3B1KEY7_A0A3B1KEY7_ASTMX_7994 and tr_A0A3B1KGF4_A0A3B1KGF4_ASTMX_7994 are exactly identical! WARNING: Sequences tr_W5KZP4_W5KZP4_ASTMX_7994 and tr_A0A2D0RXZ6_A0A2D0RXZ6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A087X9Z6_A0A087X9Z6_POEFO_48698 and tr_A0A087Y193_A0A087Y193_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087XAE6_A0A087XAE6_POEFO_48698 and tr_A0A1V4J6M1_A0A1V4J6M1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A087YA18_A0A087YA18_POEFO_48698 and tr_A0A1S3KY06_A0A1S3KY06_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A087YA18_A0A087YA18_POEFO_48698 and tr_A0A2D0SYQ2_A0A2D0SYQ2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A151M0T4_A0A151M0T4_ALLMI_8496 and tr_A0A1U7RPF4_A0A1U7RPF4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NCZ7_A0A151NCZ7_ALLMI_8496 and tr_A0A1U8D7J8_A0A1U8D7J8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NPX6_A0A151NPX6_ALLMI_8496 and tr_A0A3Q0H7V3_A0A3Q0H7V3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PDF4_A0A151PDF4_ALLMI_8496 and tr_A0A1U7SA41_A0A1U7SA41_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A026X2Z1_A0A026X2Z1_OOCBI_2015173 and tr_A0A154PRX0_A0A154PRX0_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A091VMY5_A0A091VMY5_NIPNI_128390 and tr_A0A087RAU6_A0A087RAU6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VMY5_A0A091VMY5_NIPNI_128390 and tr_A0A091W4K2_A0A091W4K2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VMY5_A0A091VMY5_NIPNI_128390 and tr_A0A091GLL2_A0A091GLL2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091VMY5_A0A091VMY5_NIPNI_128390 and tr_A0A2I0LY99_A0A2I0LY99_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091VMY5_A0A091VMY5_NIPNI_128390 and tr_A0A1V4JJZ6_A0A1V4JJZ6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A151WZR5_A0A151WZR5_9HYME_64791 and tr_A0A151I4K6_A0A151I4K6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A195DX07_A0A195DX07_9HYME_471704 and tr_A0A195BZG8_A0A195BZG8_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A195DX07_A0A195DX07_9HYME_471704 and tr_A0A195F0A5_A0A195F0A5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A195DX07_A0A195DX07_9HYME_471704 and tr_A0A151ILC8_A0A151ILC8_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3FC94_A0A1S3FC94_DIPOR_10020 and tr_A0A3Q0D9Z8_A0A3Q0D9Z8_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A1S3LBG3_A0A1S3LBG3_SALSA_8030 and tr_A0A1S3P4I9_A0A1S3P4I9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3M1Z6_A0A1S3M1Z6_SALSA_8030 and tr_A0A060VR00_A0A060VR00_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MEC2_A0A1S3MEC2_SALSA_8030 and tr_A0A060X7Q1_A0A060X7Q1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PIX7_A0A1S3PIX7_SALSA_8030 and tr_A0A1S3PIZ1_A0A1S3PIZ1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3QZI1_A0A1S3QZI1_SALSA_8030 and tr_A0A1S3R1V6_A0A1S3R1V6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3R1T6_A0A1S3R1T6_SALSA_8030 and tr_A0A1S3R232_A0A1S3R232_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3R1T6_A0A1S3R1T6_SALSA_8030 and tr_A0A1S3R490_A0A1S3R490_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3R1T6_A0A1S3R1T6_SALSA_8030 and tr_A0A1S3R5L3_A0A1S3R5L3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1L8G3H2_A0A1L8G3H2_XENLA_8355 and tr_A0A1L8G9G0_A0A1L8G9G0_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2D0RSC0_A0A2D0RSC0_ICTPU_7998 and tr_A0A2D0RTE2_A0A2D0RTE2_ICTPU_7998 are exactly identical! WARNING: Duplicate sequences found: 606 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.reduced.phy Alignment comprises 1 partitions and 8 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 8 / 8 Gaps: 3.60 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 937 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 8 / 640 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -14733.145455] Initial branch length optimization [00:00:00 -11490.971144] Model parameter optimization (eps = 10.000000) [00:00:22 -11094.632541] AUTODETECT spr round 1 (radius: 5) [00:01:09 -8443.991616] AUTODETECT spr round 2 (radius: 10) [00:02:00 -6725.677537] AUTODETECT spr round 3 (radius: 15) [00:02:52 -5748.655698] AUTODETECT spr round 4 (radius: 20) [00:03:49 -5093.164509] AUTODETECT spr round 5 (radius: 25) [00:04:48 -4423.899550] SPR radius for FAST iterations: 25 (autodetect) [00:04:48 -4423.899550] Model parameter optimization (eps = 3.000000) [00:05:03 -4333.543955] FAST spr round 1 (radius: 25) [00:05:53 -3193.556892] FAST spr round 2 (radius: 25) [00:06:41 -2949.840686] FAST spr round 3 (radius: 25) [00:07:29 -2888.698965] FAST spr round 4 (radius: 25) [00:08:18 -2882.742510] FAST spr round 5 (radius: 25) [00:09:05 -2877.073096] FAST spr round 6 (radius: 25) [00:09:51 -2877.073073] Model parameter optimization (eps = 1.000000) [00:09:57 -2865.323766] SLOW spr round 1 (radius: 5) [00:10:44 -2863.746088] SLOW spr round 2 (radius: 5) [00:11:30 -2863.742452] SLOW spr round 3 (radius: 10) [00:12:16 -2842.366035] SLOW spr round 4 (radius: 5) [00:13:03 -2837.974600] SLOW spr round 5 (radius: 5) [00:13:49 -2837.967995] SLOW spr round 6 (radius: 10) [00:14:35 -2834.002480] SLOW spr round 7 (radius: 5) [00:15:22 -2833.263215] SLOW spr round 8 (radius: 5) [00:16:08 -2833.263201] SLOW spr round 9 (radius: 10) [00:16:55 -2833.263199] SLOW spr round 10 (radius: 15) [00:17:47 -2810.443052] SLOW spr round 11 (radius: 5) [00:18:37 -2790.880503] SLOW spr round 12 (radius: 5) [00:19:23 -2790.880338] SLOW spr round 13 (radius: 10) [00:20:09 -2786.684744] SLOW spr round 14 (radius: 5) [00:20:56 -2786.684158] SLOW spr round 15 (radius: 10) [00:21:44 -2785.249124] SLOW spr round 16 (radius: 5) [00:22:33 -2785.249123] SLOW spr round 17 (radius: 10) [00:23:19 -2783.987840] SLOW spr round 18 (radius: 5) [00:24:05 -2783.987689] SLOW spr round 19 (radius: 10) [00:24:49 -2783.987687] SLOW spr round 20 (radius: 15) [00:25:37 -2783.821887] SLOW spr round 21 (radius: 5) [00:26:24 -2783.821887] SLOW spr round 22 (radius: 10) [00:27:08 -2782.989237] SLOW spr round 23 (radius: 5) [00:27:55 -2782.911001] SLOW spr round 24 (radius: 10) [00:28:39 -2782.909492] SLOW spr round 25 (radius: 15) [00:29:27 -2782.909229] SLOW spr round 26 (radius: 20) [00:30:22 -2760.468560] SLOW spr round 27 (radius: 5) [00:31:10 -2759.222734] SLOW spr round 28 (radius: 5) [00:31:53 -2759.221608] SLOW spr round 29 (radius: 10) [00:32:37 -2739.954976] SLOW spr round 30 (radius: 5) [00:33:20 -2739.954962] SLOW spr round 31 (radius: 10) [00:34:04 -2738.227451] SLOW spr round 32 (radius: 5) [00:34:48 -2738.226197] SLOW spr round 33 (radius: 10) [00:35:33 -2735.185286] SLOW spr round 34 (radius: 5) [00:36:17 -2735.185122] SLOW spr round 35 (radius: 10) [00:37:01 -2735.185121] SLOW spr round 36 (radius: 15) [00:37:47 -2727.204440] SLOW spr round 37 (radius: 5) [00:38:33 -2726.460045] SLOW spr round 38 (radius: 5) [00:39:16 -2726.460043] SLOW spr round 39 (radius: 10) [00:39:59 -2726.460043] SLOW spr round 40 (radius: 15) [00:40:44 -2726.460042] SLOW spr round 41 (radius: 20) [00:41:38 -2713.144724] SLOW spr round 42 (radius: 5) [00:42:24 -2713.144723] SLOW spr round 43 (radius: 10) [00:43:08 -2697.037185] SLOW spr round 44 (radius: 5) [00:43:53 -2697.037185] SLOW spr round 45 (radius: 10) [00:44:38 -2697.037184] SLOW spr round 46 (radius: 15) [00:45:24 -2697.037184] SLOW spr round 47 (radius: 20) [00:46:19 -2697.037184] SLOW spr round 48 (radius: 25) [00:47:15 -2686.748828] SLOW spr round 49 (radius: 5) [00:48:06 -2649.764037] SLOW spr round 50 (radius: 5) [00:48:55 -2649.429330] SLOW spr round 51 (radius: 5) [00:49:44 -2649.429303] SLOW spr round 52 (radius: 10) [00:50:34 -2647.857838] SLOW spr round 53 (radius: 5) [00:51:21 -2647.857834] SLOW spr round 54 (radius: 10) [00:52:08 -2647.857833] SLOW spr round 55 (radius: 15) [00:52:58 -2645.407128] SLOW spr round 56 (radius: 5) [00:53:47 -2645.407128] SLOW spr round 57 (radius: 10) [00:54:34 -2645.263224] SLOW spr round 58 (radius: 5) [00:55:21 -2645.263223] SLOW spr round 59 (radius: 10) [00:56:08 -2645.263223] SLOW spr round 60 (radius: 15) [00:56:56 -2645.263223] SLOW spr round 61 (radius: 20) [00:57:53 -2645.263222] SLOW spr round 62 (radius: 25) [00:58:51 -2645.263222] Model parameter optimization (eps = 0.100000) [00:58:58] ML tree search #1, logLikelihood: -2644.186012 [00:58:58 -14451.087241] Initial branch length optimization [00:58:58 -11361.750120] Model parameter optimization (eps = 10.000000) [00:59:15 -11013.807973] AUTODETECT spr round 1 (radius: 5) [00:59:56 -8250.525335] AUTODETECT spr round 2 (radius: 10) [01:00:42 -6449.259007] AUTODETECT spr round 3 (radius: 15) [01:01:30 -5529.045139] AUTODETECT spr round 4 (radius: 20) [01:02:25 -4850.909818] AUTODETECT spr round 5 (radius: 25) [01:03:22 -4221.519631] SPR radius for FAST iterations: 25 (autodetect) [01:03:22 -4221.519631] Model parameter optimization (eps = 3.000000) [01:03:34 -4155.837464] FAST spr round 1 (radius: 25) [01:04:22 -3369.772485] FAST spr round 2 (radius: 25) [01:05:10 -3279.303883] FAST spr round 3 (radius: 25) [01:05:56 -3248.414016] FAST spr round 4 (radius: 25) [01:06:42 -3248.277447] FAST spr round 5 (radius: 25) [01:07:24 -3248.277444] Model parameter optimization (eps = 1.000000) [01:07:28 -3226.582433] SLOW spr round 1 (radius: 5) [01:08:15 -3223.829594] SLOW spr round 2 (radius: 5) [01:09:00 -3223.541422] SLOW spr round 3 (radius: 5) [01:09:47 -3223.539420] SLOW spr round 4 (radius: 10) [01:10:36 -3201.149242] SLOW spr round 5 (radius: 5) [01:11:25 -3199.932683] SLOW spr round 6 (radius: 5) [01:12:11 -3199.932593] SLOW spr round 7 (radius: 10) [01:12:56 -3199.727269] SLOW spr round 8 (radius: 5) [01:13:42 -3199.726513] SLOW spr round 9 (radius: 10) [01:14:27 -3198.274355] SLOW spr round 10 (radius: 5) [01:15:13 -3198.274339] SLOW spr round 11 (radius: 10) [01:15:59 -3196.514619] SLOW spr round 12 (radius: 5) [01:16:46 -3196.514619] SLOW spr round 13 (radius: 10) [01:17:31 -3196.514619] SLOW spr round 14 (radius: 15) [01:18:21 -3188.265955] SLOW spr round 15 (radius: 5) [01:19:10 -3186.987621] SLOW spr round 16 (radius: 5) [01:19:55 -3186.987011] SLOW spr round 17 (radius: 10) [01:20:39 -3186.987008] SLOW spr round 18 (radius: 15) [01:21:27 -3186.855147] SLOW spr round 19 (radius: 5) [01:22:14 -3186.855147] SLOW spr round 20 (radius: 10) [01:22:59 -3186.380396] SLOW spr round 21 (radius: 5) [01:23:43 -3186.380395] SLOW spr round 22 (radius: 10) [01:24:28 -3186.380395] SLOW spr round 23 (radius: 15) [01:25:14 -3186.380395] SLOW spr round 24 (radius: 20) [01:26:09 -3185.131317] SLOW spr round 25 (radius: 5) [01:26:56 -3184.985599] SLOW spr round 26 (radius: 5) [01:27:39 -3184.985516] SLOW spr round 27 (radius: 10) [01:28:22 -3184.985511] SLOW spr round 28 (radius: 15) [01:29:07 -3184.985510] SLOW spr round 29 (radius: 20) [01:29:59 -3184.985510] SLOW spr round 30 (radius: 25) [01:30:55 -3178.320054] SLOW spr round 31 (radius: 5) [01:31:42 -3177.371530] SLOW spr round 32 (radius: 5) [01:32:25 -3177.371212] SLOW spr round 33 (radius: 10) [01:33:08 -3170.907421] SLOW spr round 34 (radius: 5) [01:33:52 -3167.631327] SLOW spr round 35 (radius: 5) [01:34:34 -3164.082432] SLOW spr round 36 (radius: 5) [01:35:15 -3164.073834] SLOW spr round 37 (radius: 10) [01:35:57 -3162.342255] SLOW spr round 38 (radius: 5) [01:36:41 -3162.342228] SLOW spr round 39 (radius: 10) [01:37:24 -3162.342225] SLOW spr round 40 (radius: 15) [01:38:11 -3160.089408] SLOW spr round 41 (radius: 5) [01:39:00 -3160.089408] SLOW spr round 42 (radius: 10) [01:39:46 -3160.089408] SLOW spr round 43 (radius: 15) [01:40:33 -3160.089408] SLOW spr round 44 (radius: 20) [01:41:25 -3160.089408] SLOW spr round 45 (radius: 25) [01:42:21 -3110.510610] SLOW spr round 46 (radius: 5) [01:43:11 -3055.304769] SLOW spr round 47 (radius: 5) [01:43:57 -3051.591355] SLOW spr round 48 (radius: 5) [01:44:42 -3051.130832] SLOW spr round 49 (radius: 5) [01:45:25 -3051.130832] SLOW spr round 50 (radius: 10) [01:46:11 -3033.089693] SLOW spr round 51 (radius: 5) [01:46:56 -3032.825146] SLOW spr round 52 (radius: 5) [01:47:40 -3032.825144] SLOW spr round 53 (radius: 10) [01:48:23 -3032.825144] SLOW spr round 54 (radius: 15) [01:49:10 -3032.825144] SLOW spr round 55 (radius: 20) [01:50:02 -3031.246697] SLOW spr round 56 (radius: 5) [01:50:50 -3031.246691] SLOW spr round 57 (radius: 10) [01:51:36 -3031.246691] SLOW spr round 58 (radius: 15) [01:52:23 -3031.246691] SLOW spr round 59 (radius: 20) [01:53:18 -3031.246691] SLOW spr round 60 (radius: 25) [01:54:14 -3031.246691] Model parameter optimization (eps = 0.100000) [01:54:19] ML tree search #2, logLikelihood: -3030.751651 [01:54:19 -14569.670533] Initial branch length optimization [01:54:20 -11455.765622] Model parameter optimization (eps = 10.000000) [01:54:48 -11073.230957] AUTODETECT spr round 1 (radius: 5) [01:55:35 -8532.290655] AUTODETECT spr round 2 (radius: 10) [01:56:19 -6492.506911] AUTODETECT spr round 3 (radius: 15) [01:57:16 -5499.121002] AUTODETECT spr round 4 (radius: 20) [01:58:08 -4724.037691] AUTODETECT spr round 5 (radius: 25) [01:59:12 -4508.784198] SPR radius for FAST iterations: 25 (autodetect) [01:59:12 -4508.784198] Model parameter optimization (eps = 3.000000) [01:59:32 -4334.557424] FAST spr round 1 (radius: 25) [02:00:31 -3384.459468] FAST spr round 2 (radius: 25) [02:01:18 -3263.021024] FAST spr round 3 (radius: 25) [02:02:11 -3215.821614] FAST spr round 4 (radius: 25) [02:02:54 -3211.955476] FAST spr round 5 (radius: 25) [02:03:44 -3211.257461] FAST spr round 6 (radius: 25) [02:04:27 -3210.657754] FAST spr round 7 (radius: 25) [02:05:18 -3210.189806] FAST spr round 8 (radius: 25) [02:06:00 -3210.189711] Model parameter optimization (eps = 1.000000) [02:06:04 -3203.356375] SLOW spr round 1 (radius: 5) [02:06:48 -3201.156999] SLOW spr round 2 (radius: 5) [02:07:37 -3200.491105] SLOW spr round 3 (radius: 5) [02:08:19 -3200.490837] SLOW spr round 4 (radius: 10) [02:09:08 -3185.301961] SLOW spr round 5 (radius: 5) [02:09:51 -3184.323811] SLOW spr round 6 (radius: 5) [02:10:35 -3184.323715] SLOW spr round 7 (radius: 10) [02:11:17 -3182.058567] SLOW spr round 8 (radius: 5) [02:12:03 -3182.058472] SLOW spr round 9 (radius: 10) [02:12:45 -3182.058377] SLOW spr round 10 (radius: 15) [02:13:35 -3150.581744] SLOW spr round 11 (radius: 5) [02:14:20 -3149.403378] SLOW spr round 12 (radius: 5) [02:15:06 -3146.523479] SLOW spr round 13 (radius: 5) [02:15:47 -3146.523380] SLOW spr round 14 (radius: 10) [02:16:32 -3145.832833] SLOW spr round 15 (radius: 5) [02:17:14 -3145.832719] SLOW spr round 16 (radius: 10) [02:17:59 -3145.832627] SLOW spr round 17 (radius: 15) [02:18:44 -3145.832536] SLOW spr round 18 (radius: 20) [02:19:40 -3111.485164] SLOW spr round 19 (radius: 5) [02:20:26 -3100.689244] SLOW spr round 20 (radius: 5) [02:21:12 -3095.155022] SLOW spr round 21 (radius: 5) [02:21:52 -3095.154978] SLOW spr round 22 (radius: 10) [02:22:36 -3078.331919] SLOW spr round 23 (radius: 5) [02:23:19 -3077.546381] SLOW spr round 24 (radius: 5) [02:24:03 -3077.341893] SLOW spr round 25 (radius: 5) [02:24:44 -3077.341890] SLOW spr round 26 (radius: 10) [02:25:28 -3077.341888] SLOW spr round 27 (radius: 15) [02:26:13 -3075.355994] SLOW spr round 28 (radius: 5) [02:27:03 -3075.355969] SLOW spr round 29 (radius: 10) [02:27:47 -3075.314147] SLOW spr round 30 (radius: 15) [02:28:39 -3075.314146] SLOW spr round 31 (radius: 20) [02:29:33 -3075.314145] SLOW spr round 32 (radius: 25) [02:30:37 -3065.704486] SLOW spr round 33 (radius: 5) [02:31:26 -3058.813500] SLOW spr round 34 (radius: 5) [02:32:17 -3058.812180] SLOW spr round 35 (radius: 10) [02:33:01 -3055.318363] SLOW spr round 36 (radius: 5) [02:33:52 -3055.317985] SLOW spr round 37 (radius: 10) [02:34:37 -3055.317684] SLOW spr round 38 (radius: 15) [02:35:31 -3053.923035] SLOW spr round 39 (radius: 5) [02:36:19 -3053.922761] SLOW spr round 40 (radius: 10) [02:37:09 -3053.922625] SLOW spr round 41 (radius: 15) [02:37:57 -3053.922516] SLOW spr round 42 (radius: 20) [02:38:59 -3053.922429] SLOW spr round 43 (radius: 25) [02:39:56 -3053.088143] SLOW spr round 44 (radius: 5) [02:40:50 -3053.087821] SLOW spr round 45 (radius: 10) [02:41:33 -3053.087797] SLOW spr round 46 (radius: 15) [02:42:26 -3053.087792] SLOW spr round 47 (radius: 20) [02:43:21 -3053.087790] SLOW spr round 48 (radius: 25) [02:44:26 -3053.087790] Model parameter optimization (eps = 0.100000) [02:44:29] ML tree search #3, logLikelihood: -3051.394960 [02:44:29 -14688.026359] Initial branch length optimization [02:44:29 -11475.594632] Model parameter optimization (eps = 10.000000) [02:45:01 -11048.063197] AUTODETECT spr round 1 (radius: 5) [02:45:41 -8558.532823] AUTODETECT spr round 2 (radius: 10) [02:46:26 -6456.117224] AUTODETECT spr round 3 (radius: 15) [02:47:14 -5244.551285] AUTODETECT spr round 4 (radius: 20) [02:48:06 -4505.496540] AUTODETECT spr round 5 (radius: 25) [02:48:58 -4098.947744] SPR radius for FAST iterations: 25 (autodetect) [02:48:58 -4098.947744] Model parameter optimization (eps = 3.000000) [02:49:12 -3971.421853] FAST spr round 1 (radius: 25) [02:49:56 -3246.223780] FAST spr round 2 (radius: 25) [02:50:39 -3198.177775] FAST spr round 3 (radius: 25) [02:51:21 -3165.853508] FAST spr round 4 (radius: 25) [02:52:02 -3165.499271] FAST spr round 5 (radius: 25) [02:52:42 -3165.497349] Model parameter optimization (eps = 1.000000) [02:52:46 -3156.718809] SLOW spr round 1 (radius: 5) [02:53:30 -3156.222570] SLOW spr round 2 (radius: 5) [02:54:13 -3155.925659] SLOW spr round 3 (radius: 5) [02:54:56 -3155.924304] SLOW spr round 4 (radius: 10) [02:55:40 -3148.754610] SLOW spr round 5 (radius: 5) [02:56:24 -3144.481319] SLOW spr round 6 (radius: 5) [02:57:06 -3139.386202] SLOW spr round 7 (radius: 5) [02:57:48 -3139.340943] SLOW spr round 8 (radius: 10) [02:58:30 -3138.905251] SLOW spr round 9 (radius: 5) [02:59:12 -3138.904762] SLOW spr round 10 (radius: 10) [02:59:53 -3138.632600] SLOW spr round 11 (radius: 5) [03:00:35 -3138.632210] SLOW spr round 12 (radius: 10) [03:01:17 -3138.631859] SLOW spr round 13 (radius: 15) [03:02:00 -3136.418022] SLOW spr round 14 (radius: 5) [03:02:45 -3135.332857] SLOW spr round 15 (radius: 5) [03:03:26 -3135.332608] SLOW spr round 16 (radius: 10) [03:04:07 -3131.382312] SLOW spr round 17 (radius: 5) [03:04:49 -3131.379600] SLOW spr round 18 (radius: 10) [03:05:30 -3131.378653] SLOW spr round 19 (radius: 15) [03:06:13 -3131.307131] SLOW spr round 20 (radius: 20) [03:07:00 -3131.051847] SLOW spr round 21 (radius: 5) [03:07:45 -3129.965226] SLOW spr round 22 (radius: 5) [03:08:27 -3129.965132] SLOW spr round 23 (radius: 10) [03:09:08 -3129.965057] SLOW spr round 24 (radius: 15) [03:09:51 -3129.721170] SLOW spr round 25 (radius: 5) [03:10:34 -3129.721105] SLOW spr round 26 (radius: 10) [03:11:16 -3129.182635] SLOW spr round 27 (radius: 5) [03:11:58 -3129.181664] SLOW spr round 28 (radius: 10) [03:12:39 -3129.181158] SLOW spr round 29 (radius: 15) [03:13:23 -3129.180908] SLOW spr round 30 (radius: 20) [03:14:13 -3128.897643] SLOW spr round 31 (radius: 5) [03:15:00 -3115.299998] SLOW spr round 32 (radius: 5) [03:15:44 -3115.299671] SLOW spr round 33 (radius: 10) [03:16:27 -3115.299616] SLOW spr round 34 (radius: 15) [03:17:14 -3115.299563] SLOW spr round 35 (radius: 20) [03:18:03 -3115.299513] SLOW spr round 36 (radius: 25) [03:18:57 -3114.728247] SLOW spr round 37 (radius: 5) [03:19:43 -3114.728207] SLOW spr round 38 (radius: 10) [03:20:28 -3113.821425] SLOW spr round 39 (radius: 5) [03:21:11 -3113.821380] SLOW spr round 40 (radius: 10) [03:21:55 -3113.821337] SLOW spr round 41 (radius: 15) [03:22:39 -3113.821295] SLOW spr round 42 (radius: 20) [03:23:28 -3113.821255] SLOW spr round 43 (radius: 25) [03:24:21 -3113.821215] Model parameter optimization (eps = 0.100000) [03:24:25] ML tree search #4, logLikelihood: -3112.762710 [03:24:25 -14579.887848] Initial branch length optimization [03:24:26 -11451.863383] Model parameter optimization (eps = 10.000000) [03:24:44 -11020.251593] AUTODETECT spr round 1 (radius: 5) [03:25:22 -8423.697179] AUTODETECT spr round 2 (radius: 10) [03:26:05 -6453.490384] AUTODETECT spr round 3 (radius: 15) [03:26:52 -5497.364365] AUTODETECT spr round 4 (radius: 20) [03:27:44 -4720.746265] AUTODETECT spr round 5 (radius: 25) [03:28:36 -4288.600838] SPR radius for FAST iterations: 25 (autodetect) [03:28:36 -4288.600838] Model parameter optimization (eps = 3.000000) [03:29:09 -4095.344992] FAST spr round 1 (radius: 25) [03:29:52 -3206.167710] FAST spr round 2 (radius: 25) [03:30:34 -3115.126445] FAST spr round 3 (radius: 25) [03:31:16 -3098.240325] FAST spr round 4 (radius: 25) [03:31:57 -3087.828935] FAST spr round 5 (radius: 25) [03:32:37 -3087.826363] Model parameter optimization (eps = 1.000000) [03:32:48 -3059.482191] SLOW spr round 1 (radius: 5) [03:33:31 -3054.792002] SLOW spr round 2 (radius: 5) [03:34:14 -3051.301635] SLOW spr round 3 (radius: 5) [03:34:56 -3050.698167] SLOW spr round 4 (radius: 5) [03:35:38 -3050.697186] SLOW spr round 5 (radius: 10) [03:36:21 -3047.185978] SLOW spr round 6 (radius: 5) [03:37:06 -3044.683226] SLOW spr round 7 (radius: 5) [03:37:47 -3044.682650] SLOW spr round 8 (radius: 10) [03:38:31 -3044.659949] SLOW spr round 9 (radius: 15) [03:39:17 -3021.150540] SLOW spr round 10 (radius: 5) [03:40:03 -3008.772371] SLOW spr round 11 (radius: 5) [03:40:45 -3008.304295] SLOW spr round 12 (radius: 5) [03:41:26 -3008.304243] SLOW spr round 13 (radius: 10) [03:42:08 -3008.304238] SLOW spr round 14 (radius: 15) [03:42:56 -3007.206870] SLOW spr round 15 (radius: 5) [03:43:41 -3006.231032] SLOW spr round 16 (radius: 5) [03:44:25 -3006.230745] SLOW spr round 17 (radius: 10) [03:45:10 -3006.230669] SLOW spr round 18 (radius: 15) [03:45:59 -3005.638876] SLOW spr round 19 (radius: 5) [03:46:46 -3005.638870] SLOW spr round 20 (radius: 10) [03:47:32 -3005.078558] SLOW spr round 21 (radius: 5) [03:48:16 -3005.078558] SLOW spr round 22 (radius: 10) [03:49:01 -3005.078557] SLOW spr round 23 (radius: 15) [03:49:47 -3000.895280] SLOW spr round 24 (radius: 5) [03:50:33 -3000.895280] SLOW spr round 25 (radius: 10) [03:51:16 -3000.895280] SLOW spr round 26 (radius: 15) [03:52:02 -3000.895280] SLOW spr round 27 (radius: 20) [03:52:54 -2982.745015] SLOW spr round 28 (radius: 5) [03:53:42 -2975.328656] SLOW spr round 29 (radius: 5) [03:54:25 -2975.328653] SLOW spr round 30 (radius: 10) [03:55:09 -2974.547426] SLOW spr round 31 (radius: 5) [03:55:52 -2974.547331] SLOW spr round 32 (radius: 10) [03:56:36 -2974.358200] SLOW spr round 33 (radius: 5) [03:57:19 -2973.748939] SLOW spr round 34 (radius: 5) [03:58:02 -2973.747740] SLOW spr round 35 (radius: 10) [03:58:45 -2973.747723] SLOW spr round 36 (radius: 15) [03:59:31 -2969.433836] SLOW spr round 37 (radius: 5) [04:00:16 -2969.433564] SLOW spr round 38 (radius: 10) [04:00:59 -2969.433551] SLOW spr round 39 (radius: 15) [04:01:45 -2969.433538] SLOW spr round 40 (radius: 20) [04:02:36 -2959.927063] SLOW spr round 41 (radius: 5) [04:03:23 -2948.897687] SLOW spr round 42 (radius: 5) [04:04:06 -2948.897666] SLOW spr round 43 (radius: 10) [04:04:49 -2948.140457] SLOW spr round 44 (radius: 5) [04:05:32 -2948.140456] SLOW spr round 45 (radius: 10) [04:06:15 -2948.140456] SLOW spr round 46 (radius: 15) [04:07:01 -2948.140456] SLOW spr round 47 (radius: 20) [04:07:52 -2948.101051] SLOW spr round 48 (radius: 25) [04:08:49 -2943.104353] SLOW spr round 49 (radius: 5) [04:09:37 -2933.086423] SLOW spr round 50 (radius: 5) [04:10:20 -2933.049887] SLOW spr round 51 (radius: 10) [04:11:03 -2933.049886] SLOW spr round 52 (radius: 15) [04:11:51 -2844.069820] SLOW spr round 53 (radius: 5) [04:12:37 -2798.675422] SLOW spr round 54 (radius: 5) [04:13:21 -2798.529151] SLOW spr round 55 (radius: 5) [04:14:07 -2798.529088] SLOW spr round 56 (radius: 10) [04:14:53 -2795.642167] SLOW spr round 57 (radius: 5) [04:15:40 -2795.642167] SLOW spr round 58 (radius: 10) [04:16:24 -2795.642167] SLOW spr round 59 (radius: 15) [04:17:12 -2783.862053] SLOW spr round 60 (radius: 5) [04:18:01 -2776.956838] SLOW spr round 61 (radius: 5) [04:18:45 -2776.954856] SLOW spr round 62 (radius: 10) [04:19:30 -2775.294657] SLOW spr round 63 (radius: 5) [04:20:15 -2775.294596] SLOW spr round 64 (radius: 10) [04:20:59 -2775.294583] SLOW spr round 65 (radius: 15) [04:21:46 -2775.294581] SLOW spr round 66 (radius: 20) [04:22:38 -2774.315881] SLOW spr round 67 (radius: 5) [04:23:25 -2774.315881] SLOW spr round 68 (radius: 10) [04:24:09 -2774.315881] SLOW spr round 69 (radius: 15) [04:24:56 -2774.315881] SLOW spr round 70 (radius: 20) [04:25:48 -2774.315881] SLOW spr round 71 (radius: 25) [04:26:45 -2770.407184] SLOW spr round 72 (radius: 5) [04:27:31 -2770.270438] SLOW spr round 73 (radius: 5) [04:28:14 -2770.266678] SLOW spr round 74 (radius: 10) [04:28:56 -2770.266636] SLOW spr round 75 (radius: 15) [04:29:43 -2770.266632] SLOW spr round 76 (radius: 20) [04:30:34 -2770.266629] SLOW spr round 77 (radius: 25) [04:31:32 -2770.266627] Model parameter optimization (eps = 0.100000) [04:31:37] ML tree search #5, logLikelihood: -2765.254376 [04:31:37 -14687.777984] Initial branch length optimization [04:31:37 -11498.763965] Model parameter optimization (eps = 10.000000) [04:32:00 -11044.130643] AUTODETECT spr round 1 (radius: 5) [04:32:39 -8404.017884] AUTODETECT spr round 2 (radius: 10) [04:33:22 -6402.331778] AUTODETECT spr round 3 (radius: 15) [04:34:08 -5162.016180] AUTODETECT spr round 4 (radius: 20) [04:34:55 -4663.046928] AUTODETECT spr round 5 (radius: 25) [04:35:44 -4473.271758] SPR radius for FAST iterations: 25 (autodetect) [04:35:44 -4473.271758] Model parameter optimization (eps = 3.000000) [04:36:02 -4361.932960] FAST spr round 1 (radius: 25) [04:36:46 -3566.421678] FAST spr round 2 (radius: 25) [04:37:29 -3396.125926] FAST spr round 3 (radius: 25) [04:38:11 -3326.268566] FAST spr round 4 (radius: 25) [04:38:50 -3323.892897] FAST spr round 5 (radius: 25) [04:39:30 -3323.892406] Model parameter optimization (eps = 1.000000) [04:39:33 -3316.927024] SLOW spr round 1 (radius: 5) [04:40:16 -3316.320864] SLOW spr round 2 (radius: 5) [04:40:58 -3316.319423] SLOW spr round 3 (radius: 10) [04:41:41 -3296.732265] SLOW spr round 4 (radius: 5) [04:42:25 -3286.354835] SLOW spr round 5 (radius: 5) [04:43:07 -3284.008009] SLOW spr round 6 (radius: 5) [04:43:48 -3284.007210] SLOW spr round 7 (radius: 10) [04:44:28 -3283.896518] SLOW spr round 8 (radius: 5) [04:45:10 -3283.896384] SLOW spr round 9 (radius: 10) [04:45:51 -3281.847827] SLOW spr round 10 (radius: 5) [04:46:34 -3281.817976] SLOW spr round 11 (radius: 10) [04:47:15 -3281.817715] SLOW spr round 12 (radius: 15) [04:48:01 -3278.228601] SLOW spr round 13 (radius: 5) [04:48:45 -3273.438613] SLOW spr round 14 (radius: 5) [04:49:27 -3273.438567] SLOW spr round 15 (radius: 10) [04:50:07 -3273.006113] SLOW spr round 16 (radius: 5) [04:50:49 -3273.006089] SLOW spr round 17 (radius: 10) [04:51:30 -3273.006068] SLOW spr round 18 (radius: 15) [04:52:15 -3270.835352] SLOW spr round 19 (radius: 5) [04:52:59 -3270.357641] SLOW spr round 20 (radius: 5) [04:53:40 -3270.357627] SLOW spr round 21 (radius: 10) [04:54:20 -3270.357615] SLOW spr round 22 (radius: 15) [04:55:06 -3270.357603] SLOW spr round 23 (radius: 20) [04:55:57 -3249.548176] SLOW spr round 24 (radius: 5) [04:56:43 -3225.754854] SLOW spr round 25 (radius: 5) [04:57:25 -3225.747197] SLOW spr round 26 (radius: 10) [04:58:06 -3225.745841] SLOW spr round 27 (radius: 15) [04:58:52 -3198.285649] SLOW spr round 28 (radius: 5) [04:59:37 -3192.120673] SLOW spr round 29 (radius: 5) [05:00:19 -3192.119860] SLOW spr round 30 (radius: 10) [05:01:03 -3192.119175] SLOW spr round 31 (radius: 15) [05:01:51 -3192.118602] SLOW spr round 32 (radius: 20) [05:02:44 -3188.153113] SLOW spr round 33 (radius: 5) [05:03:31 -3172.017241] SLOW spr round 34 (radius: 5) [05:04:15 -3165.208292] SLOW spr round 35 (radius: 5) [05:04:58 -3165.208119] SLOW spr round 36 (radius: 10) [05:05:42 -3149.510492] SLOW spr round 37 (radius: 5) [05:06:28 -3144.426543] SLOW spr round 38 (radius: 5) [05:07:12 -3144.426352] SLOW spr round 39 (radius: 10) [05:07:57 -3143.729042] SLOW spr round 40 (radius: 5) [05:08:43 -3143.361404] SLOW spr round 41 (radius: 5) [05:09:27 -3143.361399] SLOW spr round 42 (radius: 10) [05:10:12 -3143.333258] SLOW spr round 43 (radius: 15) [05:11:00 -3143.333256] SLOW spr round 44 (radius: 20) [05:11:55 -3143.333252] SLOW spr round 45 (radius: 25) [05:12:53 -3141.781232] SLOW spr round 46 (radius: 5) [05:13:42 -3137.846253] SLOW spr round 47 (radius: 5) [05:14:25 -3137.846237] SLOW spr round 48 (radius: 10) [05:15:10 -3137.846235] SLOW spr round 49 (radius: 15) [05:15:58 -3136.704217] SLOW spr round 50 (radius: 5) [05:16:44 -3136.695757] SLOW spr round 51 (radius: 10) [05:17:29 -3135.188024] SLOW spr round 52 (radius: 5) [05:18:14 -3135.188009] SLOW spr round 53 (radius: 10) [05:18:58 -3134.643008] SLOW spr round 54 (radius: 5) [05:19:44 -3134.589520] SLOW spr round 55 (radius: 10) [05:20:28 -3134.589506] SLOW spr round 56 (radius: 15) [05:21:17 -3134.589506] SLOW spr round 57 (radius: 20) [05:22:10 -3133.349122] SLOW spr round 58 (radius: 5) [05:22:58 -3112.184655] SLOW spr round 59 (radius: 5) [05:23:43 -3099.504886] SLOW spr round 60 (radius: 5) [05:24:27 -3097.759267] SLOW spr round 61 (radius: 5) [05:25:10 -3097.758868] SLOW spr round 62 (radius: 10) [05:25:55 -3080.585885] SLOW spr round 63 (radius: 5) [05:26:40 -3073.423143] SLOW spr round 64 (radius: 5) [05:27:23 -3066.850684] SLOW spr round 65 (radius: 5) [05:28:06 -3066.850675] SLOW spr round 66 (radius: 10) [05:28:49 -3066.848864] SLOW spr round 67 (radius: 15) [05:29:36 -3051.879810] SLOW spr round 68 (radius: 5) [05:30:23 -3045.425389] SLOW spr round 69 (radius: 5) [05:31:07 -3026.162500] SLOW spr round 70 (radius: 5) [05:31:50 -3017.936325] SLOW spr round 71 (radius: 5) [05:32:32 -3017.844325] SLOW spr round 72 (radius: 10) [05:33:14 -3017.844310] SLOW spr round 73 (radius: 15) [05:34:01 -3011.777875] SLOW spr round 74 (radius: 5) [05:34:46 -3010.581917] SLOW spr round 75 (radius: 5) [05:35:29 -3010.581895] SLOW spr round 76 (radius: 10) [05:36:11 -3010.581895] SLOW spr round 77 (radius: 15) [05:36:57 -3009.393238] SLOW spr round 78 (radius: 5) [05:37:42 -3009.392342] SLOW spr round 79 (radius: 10) [05:38:25 -3009.160846] SLOW spr round 80 (radius: 5) [05:39:09 -3009.160828] SLOW spr round 81 (radius: 10) [05:39:50 -3009.160827] SLOW spr round 82 (radius: 15) [05:40:35 -3009.160827] SLOW spr round 83 (radius: 20) [05:41:26 -3009.160827] SLOW spr round 84 (radius: 25) [05:42:21 -3008.208675] SLOW spr round 85 (radius: 5) [05:43:06 -3008.208660] SLOW spr round 86 (radius: 10) [05:43:48 -2993.178086] SLOW spr round 87 (radius: 5) [05:44:31 -2979.859405] SLOW spr round 88 (radius: 5) [05:45:12 -2979.747138] SLOW spr round 89 (radius: 5) [05:45:52 -2979.747098] SLOW spr round 90 (radius: 10) [05:46:33 -2979.003701] SLOW spr round 91 (radius: 5) [05:47:15 -2979.003690] SLOW spr round 92 (radius: 10) [05:47:56 -2978.751309] SLOW spr round 93 (radius: 5) [05:48:38 -2978.751299] SLOW spr round 94 (radius: 10) [05:49:20 -2978.751299] SLOW spr round 95 (radius: 15) [05:50:04 -2978.751299] SLOW spr round 96 (radius: 20) [05:50:55 -2978.751299] SLOW spr round 97 (radius: 25) [05:51:50 -2978.751299] Model parameter optimization (eps = 0.100000) [05:51:52] ML tree search #6, logLikelihood: -2977.619376 [05:51:52 -14584.803782] Initial branch length optimization [05:51:52 -11552.334053] Model parameter optimization (eps = 10.000000) [05:52:08 -11172.562364] AUTODETECT spr round 1 (radius: 5) [05:52:46 -8325.227958] AUTODETECT spr round 2 (radius: 10) [05:53:26 -6619.185430] AUTODETECT spr round 3 (radius: 15) [05:54:11 -5166.542969] AUTODETECT spr round 4 (radius: 20) [05:55:00 -4816.171229] AUTODETECT spr round 5 (radius: 25) [05:55:48 -4571.164513] SPR radius for FAST iterations: 25 (autodetect) [05:55:48 -4571.164513] Model parameter optimization (eps = 3.000000) [05:56:09 -4335.350730] FAST spr round 1 (radius: 25) [05:56:49 -3418.890741] FAST spr round 2 (radius: 25) [05:57:28 -3218.015653] FAST spr round 3 (radius: 25) [05:58:07 -3164.747791] FAST spr round 4 (radius: 25) [05:58:47 -3134.203365] FAST spr round 5 (radius: 25) [05:59:25 -3132.077484] FAST spr round 6 (radius: 25) [06:00:03 -3132.077464] Model parameter optimization (eps = 1.000000) [06:00:07 -3127.351887] SLOW spr round 1 (radius: 5) [06:00:48 -3124.916435] SLOW spr round 2 (radius: 5) [06:01:28 -3124.516982] SLOW spr round 3 (radius: 5) [06:02:08 -3124.516838] SLOW spr round 4 (radius: 10) [06:02:48 -3118.883296] SLOW spr round 5 (radius: 5) [06:03:30 -3117.798743] SLOW spr round 6 (radius: 5) [06:04:10 -3117.690474] SLOW spr round 7 (radius: 5) [06:04:50 -3117.690455] SLOW spr round 8 (radius: 10) [06:05:31 -3117.690442] SLOW spr round 9 (radius: 15) [06:06:16 -3091.236534] SLOW spr round 10 (radius: 5) [06:07:02 -3091.198073] SLOW spr round 11 (radius: 10) [06:07:45 -3088.328924] SLOW spr round 12 (radius: 5) [06:08:30 -3088.310951] SLOW spr round 13 (radius: 10) [06:09:13 -3088.309397] SLOW spr round 14 (radius: 15) [06:09:57 -3088.171552] SLOW spr round 15 (radius: 5) [06:10:43 -3086.937386] SLOW spr round 16 (radius: 5) [06:11:25 -3086.937380] SLOW spr round 17 (radius: 10) [06:12:08 -3086.831102] SLOW spr round 18 (radius: 5) [06:12:52 -3086.831098] SLOW spr round 19 (radius: 10) [06:13:35 -3086.217163] SLOW spr round 20 (radius: 5) [06:14:18 -3086.142084] SLOW spr round 21 (radius: 10) [06:15:01 -3086.141792] SLOW spr round 22 (radius: 15) [06:15:46 -3086.141784] SLOW spr round 23 (radius: 20) [06:16:36 -3084.715844] SLOW spr round 24 (radius: 5) [06:17:21 -3084.715350] SLOW spr round 25 (radius: 10) [06:18:04 -3080.991475] SLOW spr round 26 (radius: 5) [06:18:48 -3080.991472] SLOW spr round 27 (radius: 10) [06:19:30 -3080.991468] SLOW spr round 28 (radius: 15) [06:20:15 -3080.991465] SLOW spr round 29 (radius: 20) [06:21:03 -3080.991462] SLOW spr round 30 (radius: 25) [06:21:55 -3075.843657] SLOW spr round 31 (radius: 5) [06:22:41 -3072.417464] SLOW spr round 32 (radius: 5) [06:23:24 -3072.417349] SLOW spr round 33 (radius: 10) [06:24:07 -3072.417345] SLOW spr round 34 (radius: 15) [06:24:51 -3069.992250] SLOW spr round 35 (radius: 5) [06:25:38 -3045.680892] SLOW spr round 36 (radius: 5) [06:26:20 -3045.665497] SLOW spr round 37 (radius: 10) [06:27:04 -3045.662742] SLOW spr round 38 (radius: 15) [06:27:48 -3045.198761] SLOW spr round 39 (radius: 5) [06:28:33 -3039.714135] SLOW spr round 40 (radius: 5) [06:29:15 -3038.489218] SLOW spr round 41 (radius: 5) [06:29:56 -3038.488811] SLOW spr round 42 (radius: 10) [06:30:36 -3038.488787] SLOW spr round 43 (radius: 15) [06:31:19 -3034.741982] SLOW spr round 44 (radius: 5) [06:32:03 -3032.208839] SLOW spr round 45 (radius: 5) [06:32:44 -3032.208816] SLOW spr round 46 (radius: 10) [06:33:24 -3032.208811] SLOW spr round 47 (radius: 15) [06:34:07 -3032.208809] SLOW spr round 48 (radius: 20) [06:34:54 -3032.208806] SLOW spr round 49 (radius: 25) [06:35:46 -2997.505234] SLOW spr round 50 (radius: 5) [06:36:30 -2962.554894] SLOW spr round 51 (radius: 5) [06:37:12 -2948.664225] SLOW spr round 52 (radius: 5) [06:37:51 -2942.901561] SLOW spr round 53 (radius: 5) [06:38:31 -2942.901278] SLOW spr round 54 (radius: 10) [06:39:13 -2918.641453] SLOW spr round 55 (radius: 5) [06:39:54 -2915.981456] SLOW spr round 56 (radius: 5) [06:40:34 -2915.981400] SLOW spr round 57 (radius: 10) [06:41:14 -2915.981345] SLOW spr round 58 (radius: 15) [06:41:57 -2876.597285] SLOW spr round 59 (radius: 5) [06:42:41 -2869.663919] SLOW spr round 60 (radius: 5) [06:43:21 -2869.649847] SLOW spr round 61 (radius: 10) [06:44:02 -2869.527933] SLOW spr round 62 (radius: 5) [06:44:43 -2868.138541] SLOW spr round 63 (radius: 5) [06:45:23 -2868.128195] SLOW spr round 64 (radius: 10) [06:46:03 -2868.128045] SLOW spr round 65 (radius: 15) [06:46:47 -2795.888721] SLOW spr round 66 (radius: 5) [06:47:31 -2757.988087] SLOW spr round 67 (radius: 5) [06:48:12 -2743.714360] SLOW spr round 68 (radius: 5) [06:48:51 -2743.129884] SLOW spr round 69 (radius: 5) [06:49:31 -2743.065453] SLOW spr round 70 (radius: 10) [06:50:12 -2743.065417] SLOW spr round 71 (radius: 15) [06:50:56 -2693.881953] SLOW spr round 72 (radius: 5) [06:51:40 -2651.445405] SLOW spr round 73 (radius: 5) [06:52:21 -2646.635058] SLOW spr round 74 (radius: 5) [06:53:02 -2646.185172] SLOW spr round 75 (radius: 5) [06:53:42 -2646.185045] SLOW spr round 76 (radius: 10) [06:54:23 -2646.185038] SLOW spr round 77 (radius: 15) [06:55:07 -2642.647268] SLOW spr round 78 (radius: 5) [06:55:52 -2641.625342] SLOW spr round 79 (radius: 5) [06:56:34 -2641.625341] SLOW spr round 80 (radius: 10) [06:57:16 -2641.625340] SLOW spr round 81 (radius: 15) [06:58:00 -2641.625339] SLOW spr round 82 (radius: 20) [06:58:49 -2639.945979] SLOW spr round 83 (radius: 5) [06:59:34 -2639.945975] SLOW spr round 84 (radius: 10) [07:00:17 -2639.945974] SLOW spr round 85 (radius: 15) [07:01:00 -2639.945973] SLOW spr round 86 (radius: 20) [07:01:50 -2639.945972] SLOW spr round 87 (radius: 25) [07:02:43 -2623.553414] SLOW spr round 88 (radius: 5) [07:03:28 -2618.894935] SLOW spr round 89 (radius: 5) [07:04:09 -2618.819856] SLOW spr round 90 (radius: 10) [07:04:51 -2618.819579] SLOW spr round 91 (radius: 15) [07:05:34 -2618.819562] SLOW spr round 92 (radius: 20) [07:06:24 -2618.819561] SLOW spr round 93 (radius: 25) [07:07:16 -2618.819560] Model parameter optimization (eps = 0.100000) [07:07:19] ML tree search #7, logLikelihood: -2616.574648 [07:07:19 -14567.489732] Initial branch length optimization [07:07:20 -11498.326241] Model parameter optimization (eps = 10.000000) [07:07:43 -11096.522822] AUTODETECT spr round 1 (radius: 5) [07:08:21 -8346.005328] AUTODETECT spr round 2 (radius: 10) [07:09:02 -6461.335544] AUTODETECT spr round 3 (radius: 15) [07:09:47 -5181.702550] AUTODETECT spr round 4 (radius: 20) [07:10:37 -4538.897034] AUTODETECT spr round 5 (radius: 25) [07:11:28 -4159.205220] SPR radius for FAST iterations: 25 (autodetect) [07:11:28 -4159.205220] Model parameter optimization (eps = 3.000000) [07:11:51 -3888.678783] FAST spr round 1 (radius: 25) [07:12:35 -3122.620345] FAST spr round 2 (radius: 25) [07:13:16 -3019.240612] FAST spr round 3 (radius: 25) [07:13:56 -2993.016409] FAST spr round 4 (radius: 25) [07:14:37 -2982.942471] FAST spr round 5 (radius: 25) [07:15:17 -2982.940087] Model parameter optimization (eps = 1.000000) [07:15:21 -2974.434388] SLOW spr round 1 (radius: 5) [07:16:05 -2971.739667] SLOW spr round 2 (radius: 5) [07:16:47 -2970.070217] SLOW spr round 3 (radius: 5) [07:17:29 -2970.069491] SLOW spr round 4 (radius: 10) [07:18:12 -2959.854617] SLOW spr round 5 (radius: 5) [07:18:54 -2952.496381] SLOW spr round 6 (radius: 5) [07:19:35 -2952.496365] SLOW spr round 7 (radius: 10) [07:20:16 -2951.338882] SLOW spr round 8 (radius: 5) [07:20:59 -2951.338876] SLOW spr round 9 (radius: 10) [07:21:40 -2949.074350] SLOW spr round 10 (radius: 5) [07:22:23 -2947.766391] SLOW spr round 11 (radius: 5) [07:23:04 -2947.766246] SLOW spr round 12 (radius: 10) [07:23:45 -2947.766243] SLOW spr round 13 (radius: 15) [07:24:29 -2941.219604] SLOW spr round 14 (radius: 5) [07:25:14 -2935.494966] SLOW spr round 15 (radius: 5) [07:25:56 -2935.494320] SLOW spr round 16 (radius: 10) [07:26:37 -2934.607749] SLOW spr round 17 (radius: 5) [07:27:19 -2934.607192] SLOW spr round 18 (radius: 10) [07:27:59 -2934.607124] SLOW spr round 19 (radius: 15) [07:28:43 -2914.689527] SLOW spr round 20 (radius: 5) [07:29:27 -2876.488840] SLOW spr round 21 (radius: 5) [07:30:08 -2860.596158] SLOW spr round 22 (radius: 5) [07:30:48 -2856.418052] SLOW spr round 23 (radius: 5) [07:31:28 -2856.336772] SLOW spr round 24 (radius: 10) [07:32:08 -2854.898587] SLOW spr round 25 (radius: 5) [07:32:49 -2854.897651] SLOW spr round 26 (radius: 10) [07:33:30 -2854.897651] SLOW spr round 27 (radius: 15) [07:34:13 -2841.881358] SLOW spr round 28 (radius: 5) [07:34:56 -2840.793485] SLOW spr round 29 (radius: 5) [07:35:36 -2840.792700] SLOW spr round 30 (radius: 10) [07:36:16 -2840.792121] SLOW spr round 31 (radius: 15) [07:36:59 -2840.235278] SLOW spr round 32 (radius: 5) [07:37:41 -2840.235272] SLOW spr round 33 (radius: 10) [07:38:21 -2839.469944] SLOW spr round 34 (radius: 5) [07:39:02 -2839.469941] SLOW spr round 35 (radius: 10) [07:39:42 -2839.469941] SLOW spr round 36 (radius: 15) [07:40:26 -2839.469941] SLOW spr round 37 (radius: 20) [07:41:16 -2836.229812] SLOW spr round 38 (radius: 5) [07:41:59 -2836.229611] SLOW spr round 39 (radius: 10) [07:42:39 -2835.360796] SLOW spr round 40 (radius: 5) [07:43:20 -2834.838222] SLOW spr round 41 (radius: 5) [07:44:00 -2834.838222] SLOW spr round 42 (radius: 10) [07:44:41 -2834.838219] SLOW spr round 43 (radius: 15) [07:45:24 -2834.838219] SLOW spr round 44 (radius: 20) [07:46:15 -2834.838219] SLOW spr round 45 (radius: 25) [07:47:12 -2817.637143] SLOW spr round 46 (radius: 5) [07:47:58 -2797.384449] SLOW spr round 47 (radius: 5) [07:48:40 -2795.663522] SLOW spr round 48 (radius: 5) [07:49:24 -2763.589794] SLOW spr round 49 (radius: 5) [07:50:06 -2761.796343] SLOW spr round 50 (radius: 5) [07:50:48 -2761.796316] SLOW spr round 51 (radius: 10) [07:51:31 -2761.749251] SLOW spr round 52 (radius: 15) [07:52:16 -2754.695616] SLOW spr round 53 (radius: 5) [07:53:02 -2749.986119] SLOW spr round 54 (radius: 5) [07:53:44 -2749.986090] SLOW spr round 55 (radius: 10) [07:54:27 -2749.986089] SLOW spr round 56 (radius: 15) [07:55:12 -2749.986089] SLOW spr round 57 (radius: 20) [07:56:04 -2742.765607] SLOW spr round 58 (radius: 5) [07:56:50 -2742.413290] SLOW spr round 59 (radius: 5) [07:57:32 -2742.412748] SLOW spr round 60 (radius: 10) [07:58:18 -2742.412748] SLOW spr round 61 (radius: 15) [07:59:03 -2742.412748] SLOW spr round 62 (radius: 20) [07:59:58 -2742.168701] SLOW spr round 63 (radius: 5) [08:00:43 -2742.168683] SLOW spr round 64 (radius: 10) [08:01:32 -2742.168683] SLOW spr round 65 (radius: 15) [08:02:17 -2742.168683] SLOW spr round 66 (radius: 20) [08:03:14 -2742.168683] SLOW spr round 67 (radius: 25) [08:04:11 -2742.168683] Model parameter optimization (eps = 0.100000) [08:04:14] ML tree search #8, logLikelihood: -2740.144880 [08:04:14 -14539.734362] Initial branch length optimization [08:04:14 -11430.371425] Model parameter optimization (eps = 10.000000) [08:04:27 -11093.498342] AUTODETECT spr round 1 (radius: 5) [08:05:05 -8293.135571] AUTODETECT spr round 2 (radius: 10) [08:05:47 -6180.876031] AUTODETECT spr round 3 (radius: 15) [08:06:32 -5003.162408] AUTODETECT spr round 4 (radius: 20) [08:07:17 -4443.887612] AUTODETECT spr round 5 (radius: 25) [08:08:04 -4124.594289] SPR radius for FAST iterations: 25 (autodetect) [08:08:04 -4124.594289] Model parameter optimization (eps = 3.000000) [08:08:14 -4047.945662] FAST spr round 1 (radius: 25) [08:08:57 -3222.729131] FAST spr round 2 (radius: 25) [08:09:37 -3112.893126] FAST spr round 3 (radius: 25) [08:10:17 -3108.533987] FAST spr round 4 (radius: 25) [08:10:56 -3108.419245] FAST spr round 5 (radius: 25) [08:11:35 -3108.417329] Model parameter optimization (eps = 1.000000) [08:11:39 -3098.315106] SLOW spr round 1 (radius: 5) [08:12:20 -3070.309151] SLOW spr round 2 (radius: 5) [08:13:03 -3070.308119] SLOW spr round 3 (radius: 10) [08:13:44 -3065.798451] SLOW spr round 4 (radius: 5) [08:14:27 -3064.588156] SLOW spr round 5 (radius: 5) [08:15:08 -3064.587985] SLOW spr round 6 (radius: 10) [08:15:49 -3064.587846] SLOW spr round 7 (radius: 15) [08:16:32 -3053.959616] SLOW spr round 8 (radius: 5) [08:17:16 -3053.561046] SLOW spr round 9 (radius: 5) [08:17:56 -3053.560172] SLOW spr round 10 (radius: 10) [08:18:37 -3053.559931] SLOW spr round 11 (radius: 15) [08:19:20 -3044.206431] SLOW spr round 12 (radius: 5) [08:20:05 -3029.465216] SLOW spr round 13 (radius: 5) [08:20:46 -2984.368048] SLOW spr round 14 (radius: 5) [08:21:27 -2977.882037] SLOW spr round 15 (radius: 5) [08:22:06 -2977.881832] SLOW spr round 16 (radius: 10) [08:22:47 -2962.172720] SLOW spr round 17 (radius: 5) [08:23:29 -2945.762486] SLOW spr round 18 (radius: 5) [08:24:09 -2945.761908] SLOW spr round 19 (radius: 10) [08:24:50 -2945.761867] SLOW spr round 20 (radius: 15) [08:25:33 -2931.682022] SLOW spr round 21 (radius: 5) [08:26:17 -2921.327210] SLOW spr round 22 (radius: 5) [08:26:58 -2907.605276] SLOW spr round 23 (radius: 5) [08:27:38 -2907.605255] SLOW spr round 24 (radius: 10) [08:28:18 -2906.077515] SLOW spr round 25 (radius: 5) [08:28:59 -2906.074955] SLOW spr round 26 (radius: 10) [08:29:39 -2906.074618] SLOW spr round 27 (radius: 15) [08:30:22 -2905.303317] SLOW spr round 28 (radius: 5) [08:31:05 -2905.301110] SLOW spr round 29 (radius: 10) [08:31:47 -2905.300993] SLOW spr round 30 (radius: 15) [08:32:31 -2905.300975] SLOW spr round 31 (radius: 20) [08:33:20 -2865.611688] SLOW spr round 32 (radius: 5) [08:34:06 -2863.534331] SLOW spr round 33 (radius: 5) [08:34:48 -2863.432460] SLOW spr round 34 (radius: 5) [08:35:29 -2863.432280] SLOW spr round 35 (radius: 10) [08:36:12 -2833.371114] SLOW spr round 36 (radius: 5) [08:36:56 -2822.234176] SLOW spr round 37 (radius: 5) [08:37:38 -2822.067343] SLOW spr round 38 (radius: 5) [08:38:20 -2822.066887] SLOW spr round 39 (radius: 10) [08:39:02 -2821.898447] SLOW spr round 40 (radius: 5) [08:39:46 -2819.753737] SLOW spr round 41 (radius: 5) [08:40:27 -2819.753553] SLOW spr round 42 (radius: 10) [08:41:09 -2819.753545] SLOW spr round 43 (radius: 15) [08:41:54 -2819.175088] SLOW spr round 44 (radius: 5) [08:42:39 -2819.173226] SLOW spr round 45 (radius: 10) [08:43:21 -2819.172972] SLOW spr round 46 (radius: 15) [08:44:06 -2819.172940] SLOW spr round 47 (radius: 20) [08:44:55 -2818.448524] SLOW spr round 48 (radius: 5) [08:45:40 -2818.448425] SLOW spr round 49 (radius: 10) [08:46:22 -2818.448421] SLOW spr round 50 (radius: 15) [08:47:06 -2818.448417] SLOW spr round 51 (radius: 20) [08:47:54 -2818.448413] SLOW spr round 52 (radius: 25) [08:48:47 -2802.604796] SLOW spr round 53 (radius: 5) [08:49:33 -2791.683348] SLOW spr round 54 (radius: 5) [08:50:16 -2791.683069] SLOW spr round 55 (radius: 10) [08:50:58 -2791.464202] SLOW spr round 56 (radius: 5) [08:51:40 -2791.464191] SLOW spr round 57 (radius: 10) [08:52:23 -2791.464183] SLOW spr round 58 (radius: 15) [08:53:08 -2788.752316] SLOW spr round 59 (radius: 5) [08:53:53 -2785.377668] SLOW spr round 60 (radius: 5) [08:54:35 -2785.377662] SLOW spr round 61 (radius: 10) [08:55:15 -2785.377660] SLOW spr round 62 (radius: 15) [08:55:58 -2784.563456] SLOW spr round 63 (radius: 5) [08:56:41 -2784.258902] SLOW spr round 64 (radius: 5) [08:57:21 -2784.258644] SLOW spr round 65 (radius: 10) [08:58:01 -2784.258623] SLOW spr round 66 (radius: 15) [08:58:44 -2784.258620] SLOW spr round 67 (radius: 20) [08:59:31 -2784.258617] SLOW spr round 68 (radius: 25) [09:00:22 -2784.258615] Model parameter optimization (eps = 0.100000) [09:00:25] ML tree search #9, logLikelihood: -2781.641272 [09:00:26 -14802.693530] Initial branch length optimization [09:00:26 -11723.562098] Model parameter optimization (eps = 10.000000) [09:00:44 -11325.090807] AUTODETECT spr round 1 (radius: 5) [09:01:20 -8598.723751] AUTODETECT spr round 2 (radius: 10) [09:02:03 -6392.341182] AUTODETECT spr round 3 (radius: 15) [09:02:46 -5427.153503] AUTODETECT spr round 4 (radius: 20) [09:03:36 -4642.175103] AUTODETECT spr round 5 (radius: 25) [09:04:25 -4234.342555] SPR radius for FAST iterations: 25 (autodetect) [09:04:25 -4234.342555] Model parameter optimization (eps = 3.000000) [09:04:38 -4152.699388] FAST spr round 1 (radius: 25) [09:05:19 -3256.050946] FAST spr round 2 (radius: 25) [09:06:01 -3120.468849] FAST spr round 3 (radius: 25) [09:06:39 -3075.804478] FAST spr round 4 (radius: 25) [09:07:20 -3057.350993] FAST spr round 5 (radius: 25) [09:07:58 -3057.350618] Model parameter optimization (eps = 1.000000) [09:08:01 -3054.190343] SLOW spr round 1 (radius: 5) [09:08:41 -3052.074013] SLOW spr round 2 (radius: 5) [09:09:24 -3051.726433] SLOW spr round 3 (radius: 5) [09:10:03 -3051.726000] SLOW spr round 4 (radius: 10) [09:10:46 -3049.814333] SLOW spr round 5 (radius: 5) [09:11:27 -3044.515449] SLOW spr round 6 (radius: 5) [09:12:10 -3044.144449] SLOW spr round 7 (radius: 5) [09:12:49 -3044.142626] SLOW spr round 8 (radius: 10) [09:13:33 -3043.537990] SLOW spr round 9 (radius: 5) [09:14:14 -3043.534855] SLOW spr round 10 (radius: 10) [09:14:58 -3042.610772] SLOW spr round 11 (radius: 5) [09:15:39 -3042.167128] SLOW spr round 12 (radius: 5) [09:16:23 -3042.166972] SLOW spr round 13 (radius: 10) [09:17:04 -3041.753178] SLOW spr round 14 (radius: 5) [09:17:48 -3041.746584] SLOW spr round 15 (radius: 10) [09:18:29 -3041.746422] SLOW spr round 16 (radius: 15) [09:19:15 -3008.698543] SLOW spr round 17 (radius: 5) [09:19:59 -3001.715890] SLOW spr round 18 (radius: 5) [09:20:42 -3001.715355] SLOW spr round 19 (radius: 10) [09:21:23 -2987.720519] SLOW spr round 20 (radius: 5) [09:22:06 -2987.646883] SLOW spr round 21 (radius: 10) [09:22:46 -2987.644949] SLOW spr round 22 (radius: 15) [09:23:32 -2986.724969] SLOW spr round 23 (radius: 5) [09:24:15 -2986.395567] SLOW spr round 24 (radius: 5) [09:24:58 -2986.394657] SLOW spr round 25 (radius: 10) [09:25:38 -2986.394642] SLOW spr round 26 (radius: 15) [09:26:23 -2986.394642] SLOW spr round 27 (radius: 20) [09:27:13 -2961.663576] SLOW spr round 28 (radius: 5) [09:28:00 -2934.615645] SLOW spr round 29 (radius: 5) [09:28:40 -2928.467110] SLOW spr round 30 (radius: 5) [09:29:22 -2928.466878] SLOW spr round 31 (radius: 10) [09:30:02 -2918.918654] SLOW spr round 32 (radius: 5) [09:30:44 -2918.918649] SLOW spr round 33 (radius: 10) [09:31:24 -2918.918649] SLOW spr round 34 (radius: 15) [09:32:09 -2918.367602] SLOW spr round 35 (radius: 5) [09:32:51 -2918.367602] SLOW spr round 36 (radius: 10) [09:33:35 -2917.878683] SLOW spr round 37 (radius: 5) [09:34:16 -2917.878681] SLOW spr round 38 (radius: 10) [09:34:58 -2917.878681] SLOW spr round 39 (radius: 15) [09:35:41 -2917.878681] SLOW spr round 40 (radius: 20) [09:36:34 -2914.210708] SLOW spr round 41 (radius: 5) [09:37:18 -2912.651765] SLOW spr round 42 (radius: 5) [09:38:02 -2912.648131] SLOW spr round 43 (radius: 10) [09:38:44 -2862.220674] SLOW spr round 44 (radius: 5) [09:39:31 -2834.717915] SLOW spr round 45 (radius: 5) [09:40:12 -2834.695516] SLOW spr round 46 (radius: 10) [09:40:59 -2834.694088] SLOW spr round 47 (radius: 15) [09:41:43 -2834.693842] SLOW spr round 48 (radius: 20) [09:42:40 -2834.693741] SLOW spr round 49 (radius: 25) [09:43:34 -2831.928425] SLOW spr round 50 (radius: 5) [09:44:28 -2824.720324] SLOW spr round 51 (radius: 5) [09:45:12 -2822.657103] SLOW spr round 52 (radius: 5) [09:46:02 -2822.656896] SLOW spr round 53 (radius: 10) [09:46:46 -2822.656889] SLOW spr round 54 (radius: 15) [09:47:37 -2820.963558] SLOW spr round 55 (radius: 5) [09:48:23 -2820.963551] SLOW spr round 56 (radius: 10) [09:49:14 -2820.963547] SLOW spr round 57 (radius: 15) [09:49:59 -2820.963544] SLOW spr round 58 (radius: 20) [09:50:56 -2820.963541] SLOW spr round 59 (radius: 25) [09:51:50 -2819.927855] SLOW spr round 60 (radius: 5) [09:52:43 -2819.927113] SLOW spr round 61 (radius: 10) [09:53:26 -2819.926978] SLOW spr round 62 (radius: 15) [09:54:16 -2819.926976] SLOW spr round 63 (radius: 20) [09:55:05 -2819.926975] SLOW spr round 64 (radius: 25) [09:56:03 -2819.926973] Model parameter optimization (eps = 0.100000) [09:56:06] ML tree search #10, logLikelihood: -2819.412153 [09:56:06 -14734.203804] Initial branch length optimization [09:56:06 -11596.769002] Model parameter optimization (eps = 10.000000) [09:56:24 -11171.317575] AUTODETECT spr round 1 (radius: 5) [09:57:01 -8543.288614] AUTODETECT spr round 2 (radius: 10) [09:57:45 -6506.737785] AUTODETECT spr round 3 (radius: 15) [09:58:29 -5338.474685] AUTODETECT spr round 4 (radius: 20) [09:59:16 -4901.638161] AUTODETECT spr round 5 (radius: 25) [10:00:02 -4627.209751] SPR radius for FAST iterations: 25 (autodetect) [10:00:02 -4627.209751] Model parameter optimization (eps = 3.000000) [10:00:21 -4466.149531] FAST spr round 1 (radius: 25) [10:01:05 -3520.139916] FAST spr round 2 (radius: 25) [10:01:50 -3345.792831] FAST spr round 3 (radius: 25) [10:02:30 -3287.931717] FAST spr round 4 (radius: 25) [10:03:13 -3283.398902] FAST spr round 5 (radius: 25) [10:03:52 -3282.728524] FAST spr round 6 (radius: 25) [10:04:35 -3282.726455] Model parameter optimization (eps = 1.000000) [10:04:38 -3278.376166] SLOW spr round 1 (radius: 5) [10:05:23 -3276.058664] SLOW spr round 2 (radius: 5) [10:06:04 -3276.055159] SLOW spr round 3 (radius: 10) [10:06:49 -3274.126314] SLOW spr round 4 (radius: 5) [10:07:32 -3273.700498] SLOW spr round 5 (radius: 5) [10:08:14 -3273.700083] SLOW spr round 6 (radius: 10) [10:08:55 -3273.691004] SLOW spr round 7 (radius: 15) [10:09:43 -3273.528352] SLOW spr round 8 (radius: 5) [10:10:28 -3273.528108] SLOW spr round 9 (radius: 10) [10:11:12 -3271.830245] SLOW spr round 10 (radius: 5) [10:11:54 -3271.620237] SLOW spr round 11 (radius: 5) [10:12:37 -3271.620112] SLOW spr round 12 (radius: 10) [10:13:17 -3271.620012] SLOW spr round 13 (radius: 15) [10:14:03 -3271.619918] SLOW spr round 14 (radius: 20) [10:14:51 -3268.995191] SLOW spr round 15 (radius: 5) [10:15:37 -3268.993160] SLOW spr round 16 (radius: 10) [10:16:19 -3266.439865] SLOW spr round 17 (radius: 5) [10:17:04 -3265.743460] SLOW spr round 18 (radius: 5) [10:17:43 -3265.743311] SLOW spr round 19 (radius: 10) [10:18:26 -3265.743215] SLOW spr round 20 (radius: 15) [10:19:11 -3263.124493] SLOW spr round 21 (radius: 5) [10:19:58 -3263.124425] SLOW spr round 22 (radius: 10) [10:20:39 -3263.124362] SLOW spr round 23 (radius: 15) [10:21:28 -3263.124301] SLOW spr round 24 (radius: 20) [10:22:16 -3263.124242] SLOW spr round 25 (radius: 25) [10:23:11 -3257.180677] SLOW spr round 26 (radius: 5) [10:23:57 -3239.654988] SLOW spr round 27 (radius: 5) [10:24:42 -3239.504844] SLOW spr round 28 (radius: 5) [10:25:23 -3239.504449] SLOW spr round 29 (radius: 10) [10:26:07 -3239.068787] SLOW spr round 30 (radius: 5) [10:26:50 -3239.068774] SLOW spr round 31 (radius: 10) [10:27:35 -3239.068773] SLOW spr round 32 (radius: 15) [10:28:21 -3187.824392] SLOW spr round 33 (radius: 5) [10:29:08 -3167.186472] SLOW spr round 34 (radius: 5) [10:29:50 -3166.580086] SLOW spr round 35 (radius: 5) [10:30:34 -3165.999137] SLOW spr round 36 (radius: 5) [10:31:14 -3165.998892] SLOW spr round 37 (radius: 10) [10:31:58 -3165.998878] SLOW spr round 38 (radius: 15) [10:32:42 -3154.829323] SLOW spr round 39 (radius: 5) [10:33:28 -3152.132193] SLOW spr round 40 (radius: 5) [10:34:09 -3152.131193] SLOW spr round 41 (radius: 10) [10:34:53 -3152.061550] SLOW spr round 42 (radius: 15) [10:35:36 -3152.061537] SLOW spr round 43 (radius: 20) [10:36:28 -3148.314567] SLOW spr round 44 (radius: 5) [10:37:14 -3147.791257] SLOW spr round 45 (radius: 5) [10:38:01 -3147.715187] SLOW spr round 46 (radius: 10) [10:38:44 -3147.715169] SLOW spr round 47 (radius: 15) [10:39:31 -3147.715151] SLOW spr round 48 (radius: 20) [10:40:19 -3147.715134] SLOW spr round 49 (radius: 25) [10:41:14 -3146.890502] SLOW spr round 50 (radius: 5) [10:42:00 -3146.877681] SLOW spr round 51 (radius: 10) [10:42:45 -3146.877514] SLOW spr round 52 (radius: 15) [10:43:28 -3146.877494] SLOW spr round 53 (radius: 20) [10:44:20 -3146.877479] SLOW spr round 54 (radius: 25) [10:45:11 -3146.877464] Model parameter optimization (eps = 0.100000) [10:45:14] ML tree search #11, logLikelihood: -3146.570311 [10:45:14 -14744.134742] Initial branch length optimization [10:45:14 -11541.167797] Model parameter optimization (eps = 10.000000) [10:45:37 -11093.955149] AUTODETECT spr round 1 (radius: 5) [10:46:14 -8640.828469] AUTODETECT spr round 2 (radius: 10) [10:46:55 -6467.259207] AUTODETECT spr round 3 (radius: 15) [10:47:39 -5062.496568] AUTODETECT spr round 4 (radius: 20) [10:48:27 -4254.171181] AUTODETECT spr round 5 (radius: 25) [10:49:18 -4054.078412] SPR radius for FAST iterations: 25 (autodetect) [10:49:18 -4054.078412] Model parameter optimization (eps = 3.000000) [10:49:34 -3879.870769] FAST spr round 1 (radius: 25) [10:50:16 -3195.434466] FAST spr round 2 (radius: 25) [10:50:56 -3128.691619] FAST spr round 3 (radius: 25) [10:51:36 -3102.559587] FAST spr round 4 (radius: 25) [10:52:16 -3091.638752] FAST spr round 5 (radius: 25) [10:52:55 -3083.353104] FAST spr round 6 (radius: 25) [10:53:34 -3083.353093] Model parameter optimization (eps = 1.000000) [10:53:37 -3074.844266] SLOW spr round 1 (radius: 5) [10:54:19 -3067.744756] SLOW spr round 2 (radius: 5) [10:55:00 -3067.653361] SLOW spr round 3 (radius: 10) [10:55:42 -3067.096895] SLOW spr round 4 (radius: 5) [10:56:24 -3067.079968] SLOW spr round 5 (radius: 10) [10:57:05 -3067.079962] SLOW spr round 6 (radius: 15) [10:57:49 -3041.038518] SLOW spr round 7 (radius: 5) [10:58:34 -3039.308583] SLOW spr round 8 (radius: 5) [10:59:15 -3039.308409] SLOW spr round 9 (radius: 10) [10:59:55 -3039.308409] SLOW spr round 10 (radius: 15) [11:00:39 -3038.613420] SLOW spr round 11 (radius: 5) [11:01:23 -3038.613198] SLOW spr round 12 (radius: 10) [11:02:04 -3034.860196] SLOW spr round 13 (radius: 5) [11:02:47 -3033.954511] SLOW spr round 14 (radius: 5) [11:03:28 -3033.895844] SLOW spr round 15 (radius: 10) [11:04:09 -3033.893783] SLOW spr round 16 (radius: 15) [11:04:52 -3033.893705] SLOW spr round 17 (radius: 20) [11:05:43 -3030.938901] SLOW spr round 18 (radius: 5) [11:06:28 -3028.639354] SLOW spr round 19 (radius: 5) [11:07:09 -3028.638987] SLOW spr round 20 (radius: 10) [11:07:50 -3028.638870] SLOW spr round 21 (radius: 15) [11:08:33 -3028.638786] SLOW spr round 22 (radius: 20) [11:09:23 -3027.112267] SLOW spr round 23 (radius: 5) [11:10:07 -3027.112188] SLOW spr round 24 (radius: 10) [11:10:48 -3027.112108] SLOW spr round 25 (radius: 15) [11:11:31 -3027.112028] SLOW spr round 26 (radius: 20) [11:12:21 -3027.111948] SLOW spr round 27 (radius: 25) [11:13:18 -3003.932124] SLOW spr round 28 (radius: 5) [11:14:03 -2981.213427] SLOW spr round 29 (radius: 5) [11:14:45 -2964.104554] SLOW spr round 30 (radius: 5) [11:15:25 -2947.659181] SLOW spr round 31 (radius: 5) [11:16:05 -2943.660611] SLOW spr round 32 (radius: 5) [11:16:44 -2943.660610] SLOW spr round 33 (radius: 10) [11:17:25 -2924.612412] SLOW spr round 34 (radius: 5) [11:18:06 -2919.270732] SLOW spr round 35 (radius: 5) [11:18:46 -2919.270062] SLOW spr round 36 (radius: 10) [11:19:26 -2919.269855] SLOW spr round 37 (radius: 15) [11:20:09 -2913.336548] SLOW spr round 38 (radius: 5) [11:20:52 -2900.866562] SLOW spr round 39 (radius: 5) [11:21:33 -2898.915483] SLOW spr round 40 (radius: 5) [11:22:12 -2898.915476] SLOW spr round 41 (radius: 10) [11:22:52 -2898.915476] SLOW spr round 42 (radius: 15) [11:23:35 -2898.200140] SLOW spr round 43 (radius: 5) [11:24:18 -2898.198485] SLOW spr round 44 (radius: 10) [11:24:59 -2896.012184] SLOW spr round 45 (radius: 5) [11:25:39 -2896.012172] SLOW spr round 46 (radius: 10) [11:26:19 -2896.012172] SLOW spr round 47 (radius: 15) [11:27:02 -2896.012171] SLOW spr round 48 (radius: 20) [11:27:51 -2885.570729] SLOW spr round 49 (radius: 5) [11:28:35 -2885.570721] SLOW spr round 50 (radius: 10) [11:29:15 -2885.570721] SLOW spr round 51 (radius: 15) [11:29:57 -2885.570721] SLOW spr round 52 (radius: 20) [11:30:46 -2885.570721] SLOW spr round 53 (radius: 25) [11:31:42 -2871.996331] SLOW spr round 54 (radius: 5) [11:32:27 -2865.012553] SLOW spr round 55 (radius: 5) [11:33:09 -2838.647897] SLOW spr round 56 (radius: 5) [11:33:50 -2838.647630] SLOW spr round 57 (radius: 10) [11:34:32 -2805.099054] SLOW spr round 58 (radius: 5) [11:35:14 -2801.131958] SLOW spr round 59 (radius: 5) [11:35:55 -2801.130856] SLOW spr round 60 (radius: 10) [11:36:37 -2801.130501] SLOW spr round 61 (radius: 15) [11:37:21 -2800.411967] SLOW spr round 62 (radius: 5) [11:38:05 -2800.411951] SLOW spr round 63 (radius: 10) [11:38:47 -2800.411948] SLOW spr round 64 (radius: 15) [11:39:31 -2800.411947] SLOW spr round 65 (radius: 20) [11:40:21 -2800.411946] SLOW spr round 66 (radius: 25) [11:41:18 -2800.411946] Model parameter optimization (eps = 0.100000) [11:41:21] ML tree search #12, logLikelihood: -2798.874395 [11:41:21 -14695.181635] Initial branch length optimization [11:41:22 -11523.331057] Model parameter optimization (eps = 10.000000) [11:41:42 -11155.508367] AUTODETECT spr round 1 (radius: 5) [11:42:19 -8308.345950] AUTODETECT spr round 2 (radius: 10) [11:43:00 -6244.609204] AUTODETECT spr round 3 (radius: 15) [11:43:44 -5033.204895] AUTODETECT spr round 4 (radius: 20) [11:44:30 -4341.769657] AUTODETECT spr round 5 (radius: 25) [11:45:17 -4164.527402] SPR radius for FAST iterations: 25 (autodetect) [11:45:17 -4164.527402] Model parameter optimization (eps = 3.000000) [11:45:28 -4086.712064] FAST spr round 1 (radius: 25) [11:46:10 -3449.057765] FAST spr round 2 (radius: 25) [11:46:51 -3327.969658] FAST spr round 3 (radius: 25) [11:47:31 -3323.243926] FAST spr round 4 (radius: 25) [11:48:10 -3323.243672] Model parameter optimization (eps = 1.000000) [11:48:14 -3314.549304] SLOW spr round 1 (radius: 5) [11:48:59 -3313.243512] SLOW spr round 2 (radius: 5) [11:49:42 -3313.066432] SLOW spr round 3 (radius: 5) [11:50:25 -3313.066251] SLOW spr round 4 (radius: 10) [11:51:09 -3310.462089] SLOW spr round 5 (radius: 5) [11:51:54 -3306.593554] SLOW spr round 6 (radius: 5) [11:52:36 -3306.593348] SLOW spr round 7 (radius: 10) [11:53:18 -3306.288371] SLOW spr round 8 (radius: 5) [11:54:02 -3306.284779] SLOW spr round 9 (radius: 10) [11:54:45 -3304.590383] SLOW spr round 10 (radius: 5) [11:55:28 -3304.590225] SLOW spr round 11 (radius: 10) [11:56:10 -3304.590126] SLOW spr round 12 (radius: 15) [11:56:55 -3302.807220] SLOW spr round 13 (radius: 5) [11:57:41 -3302.702033] SLOW spr round 14 (radius: 5) [11:58:24 -3302.700863] SLOW spr round 15 (radius: 10) [11:59:07 -3300.406474] SLOW spr round 16 (radius: 5) [11:59:51 -3300.267316] SLOW spr round 17 (radius: 5) [12:00:33 -3300.267191] SLOW spr round 18 (radius: 10) [12:01:14 -3300.267110] SLOW spr round 19 (radius: 15) [12:02:00 -3298.157874] SLOW spr round 20 (radius: 5) [12:02:45 -3298.155711] SLOW spr round 21 (radius: 10) [12:03:28 -3298.155385] SLOW spr round 22 (radius: 15) [12:04:13 -3298.155313] SLOW spr round 23 (radius: 20) [12:05:06 -3295.800991] SLOW spr round 24 (radius: 5) [12:05:52 -3295.304131] SLOW spr round 25 (radius: 5) [12:06:36 -3295.276995] SLOW spr round 26 (radius: 10) [12:07:18 -3295.276980] SLOW spr round 27 (radius: 15) [12:08:04 -3295.276969] SLOW spr round 28 (radius: 20) [12:08:56 -3295.276959] SLOW spr round 29 (radius: 25) [12:09:53 -3234.976934] SLOW spr round 30 (radius: 5) [12:10:40 -3198.217989] SLOW spr round 31 (radius: 5) [12:11:22 -3198.169842] SLOW spr round 32 (radius: 10) [12:12:04 -3188.897249] SLOW spr round 33 (radius: 5) [12:12:46 -3187.373953] SLOW spr round 34 (radius: 5) [12:13:27 -3187.373951] SLOW spr round 35 (radius: 10) [12:14:08 -3186.926653] SLOW spr round 36 (radius: 5) [12:14:50 -3186.926651] SLOW spr round 37 (radius: 10) [12:15:31 -3183.665668] SLOW spr round 38 (radius: 5) [12:16:13 -3183.665666] SLOW spr round 39 (radius: 10) [12:16:55 -3183.665665] SLOW spr round 40 (radius: 15) [12:17:41 -3168.590122] SLOW spr round 41 (radius: 5) [12:18:27 -3162.654420] SLOW spr round 42 (radius: 5) [12:19:10 -3161.781805] SLOW spr round 43 (radius: 5) [12:19:52 -3161.781699] SLOW spr round 44 (radius: 10) [12:20:35 -3161.781683] SLOW spr round 45 (radius: 15) [12:21:20 -3161.781681] SLOW spr round 46 (radius: 20) [12:22:10 -3161.781680] SLOW spr round 47 (radius: 25) [12:23:04 -3161.781679] Model parameter optimization (eps = 0.100000) [12:23:07] ML tree search #13, logLikelihood: -3159.847854 [12:23:07 -14582.031575] Initial branch length optimization [12:23:07 -11496.549125] Model parameter optimization (eps = 10.000000) [12:23:22 -11143.715897] AUTODETECT spr round 1 (radius: 5) [12:24:00 -8016.892062] AUTODETECT spr round 2 (radius: 10) [12:24:43 -6106.742234] AUTODETECT spr round 3 (radius: 15) [12:25:30 -5117.824181] AUTODETECT spr round 4 (radius: 20) [12:26:20 -4396.569836] AUTODETECT spr round 5 (radius: 25) [12:27:13 -4106.139888] SPR radius for FAST iterations: 25 (autodetect) [12:27:13 -4106.139888] Model parameter optimization (eps = 3.000000) [12:27:26 -4029.915838] FAST spr round 1 (radius: 25) [12:28:08 -3134.879856] FAST spr round 2 (radius: 25) [12:28:50 -3044.675798] FAST spr round 3 (radius: 25) [12:29:30 -3035.867521] FAST spr round 4 (radius: 25) [12:30:10 -3034.410812] FAST spr round 5 (radius: 25) [12:30:49 -3034.410789] Model parameter optimization (eps = 1.000000) [12:30:53 -3027.357021] SLOW spr round 1 (radius: 5) [12:31:34 -3024.310050] SLOW spr round 2 (radius: 5) [12:32:16 -3024.301836] SLOW spr round 3 (radius: 10) [12:32:58 -3018.874813] SLOW spr round 4 (radius: 5) [12:33:42 -3000.735646] SLOW spr round 5 (radius: 5) [12:34:23 -2988.843962] SLOW spr round 6 (radius: 5) [12:35:05 -2988.733364] SLOW spr round 7 (radius: 5) [12:35:46 -2988.640530] SLOW spr round 8 (radius: 10) [12:36:27 -2988.640074] SLOW spr round 9 (radius: 15) [12:37:12 -2984.871717] SLOW spr round 10 (radius: 5) [12:37:58 -2984.809404] SLOW spr round 11 (radius: 10) [12:38:40 -2982.924157] SLOW spr round 12 (radius: 5) [12:39:23 -2979.791032] SLOW spr round 13 (radius: 5) [12:40:04 -2979.764303] SLOW spr round 14 (radius: 10) [12:40:45 -2979.763920] SLOW spr round 15 (radius: 15) [12:41:29 -2978.803781] SLOW spr round 16 (radius: 5) [12:42:13 -2978.713668] SLOW spr round 17 (radius: 10) [12:42:54 -2978.713647] SLOW spr round 18 (radius: 15) [12:43:38 -2978.713646] SLOW spr round 19 (radius: 20) [12:44:29 -2972.371354] SLOW spr round 20 (radius: 5) [12:45:14 -2972.308132] SLOW spr round 21 (radius: 10) [12:45:55 -2971.242066] SLOW spr round 22 (radius: 5) [12:46:41 -2971.240959] SLOW spr round 23 (radius: 10) [12:47:22 -2971.240165] SLOW spr round 24 (radius: 15) [12:48:07 -2971.239735] SLOW spr round 25 (radius: 20) [12:48:56 -2971.239191] SLOW spr round 26 (radius: 25) [12:49:55 -2951.743053] SLOW spr round 27 (radius: 5) [12:50:40 -2910.202790] SLOW spr round 28 (radius: 5) [12:51:24 -2894.094322] SLOW spr round 29 (radius: 5) [12:52:04 -2894.094317] SLOW spr round 30 (radius: 10) [12:52:48 -2891.953658] SLOW spr round 31 (radius: 5) [12:53:30 -2891.952590] SLOW spr round 32 (radius: 10) [12:54:14 -2891.952369] SLOW spr round 33 (radius: 15) [12:54:58 -2871.962395] SLOW spr round 34 (radius: 5) [12:55:45 -2871.962381] SLOW spr round 35 (radius: 10) [12:56:26 -2871.962366] SLOW spr round 36 (radius: 15) [12:57:14 -2871.962365] SLOW spr round 37 (radius: 20) [12:58:03 -2861.996314] SLOW spr round 38 (radius: 5) [12:58:52 -2855.780263] SLOW spr round 39 (radius: 5) [12:59:32 -2855.780263] SLOW spr round 40 (radius: 10) [13:00:15 -2855.780263] SLOW spr round 41 (radius: 15) [13:00:58 -2855.780263] SLOW spr round 42 (radius: 20) [13:01:48 -2855.780263] SLOW spr round 43 (radius: 25) [13:02:42 -2855.780263] Model parameter optimization (eps = 0.100000) [13:02:45] ML tree search #14, logLikelihood: -2854.884246 [13:02:45 -14553.684654] Initial branch length optimization [13:02:45 -11411.893955] Model parameter optimization (eps = 10.000000) [13:03:08 -11054.108711] AUTODETECT spr round 1 (radius: 5) [13:03:45 -8448.444855] AUTODETECT spr round 2 (radius: 10) [13:04:25 -6408.542467] AUTODETECT spr round 3 (radius: 15) [13:05:08 -5034.848468] AUTODETECT spr round 4 (radius: 20) [13:05:54 -4598.583672] AUTODETECT spr round 5 (radius: 25) [13:06:43 -4210.859378] SPR radius for FAST iterations: 25 (autodetect) [13:06:43 -4210.859378] Model parameter optimization (eps = 3.000000) [13:07:06 -4016.942352] FAST spr round 1 (radius: 25) [13:07:46 -3188.642435] FAST spr round 2 (radius: 25) [13:08:26 -3066.641561] FAST spr round 3 (radius: 25) [13:09:05 -3014.855323] FAST spr round 4 (radius: 25) [13:09:43 -3014.854955] Model parameter optimization (eps = 1.000000) [13:09:47 -3005.070444] SLOW spr round 1 (radius: 5) [13:10:28 -2996.708897] SLOW spr round 2 (radius: 5) [13:11:09 -2992.380685] SLOW spr round 3 (radius: 5) [13:11:49 -2992.093104] SLOW spr round 4 (radius: 5) [13:12:30 -2992.092699] SLOW spr round 5 (radius: 10) [13:13:11 -2989.082566] SLOW spr round 6 (radius: 5) [13:13:53 -2985.130575] SLOW spr round 7 (radius: 5) [13:14:33 -2982.101567] SLOW spr round 8 (radius: 5) [13:15:13 -2982.101177] SLOW spr round 9 (radius: 10) [13:15:53 -2982.064390] SLOW spr round 10 (radius: 15) [13:16:36 -2966.721470] SLOW spr round 11 (radius: 5) [13:17:21 -2963.035469] SLOW spr round 12 (radius: 5) [13:18:01 -2963.035443] SLOW spr round 13 (radius: 10) [13:18:42 -2963.035443] SLOW spr round 14 (radius: 15) [13:19:25 -2963.035443] SLOW spr round 15 (radius: 20) [13:20:16 -2947.630626] SLOW spr round 16 (radius: 5) [13:21:00 -2916.312741] SLOW spr round 17 (radius: 5) [13:21:42 -2899.630832] SLOW spr round 18 (radius: 5) [13:22:21 -2899.609707] SLOW spr round 19 (radius: 10) [13:23:03 -2893.555968] SLOW spr round 20 (radius: 5) [13:23:44 -2893.555731] SLOW spr round 21 (radius: 10) [13:24:25 -2893.555700] SLOW spr round 22 (radius: 15) [13:25:08 -2893.271558] SLOW spr round 23 (radius: 5) [13:25:52 -2893.270682] SLOW spr round 24 (radius: 10) [13:26:34 -2892.835674] SLOW spr round 25 (radius: 5) [13:27:16 -2892.835673] SLOW spr round 26 (radius: 10) [13:27:57 -2892.835672] SLOW spr round 27 (radius: 15) [13:28:41 -2892.835672] SLOW spr round 28 (radius: 20) [13:29:33 -2892.835671] SLOW spr round 29 (radius: 25) [13:30:31 -2844.742487] SLOW spr round 30 (radius: 5) [13:31:19 -2821.309546] SLOW spr round 31 (radius: 5) [13:32:02 -2818.081126] SLOW spr round 32 (radius: 5) [13:32:45 -2816.468277] SLOW spr round 33 (radius: 5) [13:33:27 -2816.440195] SLOW spr round 34 (radius: 10) [13:34:10 -2816.440189] SLOW spr round 35 (radius: 15) [13:34:56 -2815.139673] SLOW spr round 36 (radius: 5) [13:35:42 -2814.382768] SLOW spr round 37 (radius: 5) [13:36:25 -2814.382761] SLOW spr round 38 (radius: 10) [13:37:08 -2814.382758] SLOW spr round 39 (radius: 15) [13:37:54 -2814.290674] SLOW spr round 40 (radius: 20) [13:38:47 -2814.232319] SLOW spr round 41 (radius: 25) [13:39:42 -2814.232277] Model parameter optimization (eps = 0.100000) [13:39:45] ML tree search #15, logLikelihood: -2813.045944 [13:39:45 -14583.879492] Initial branch length optimization [13:39:46 -11531.019328] Model parameter optimization (eps = 10.000000) [13:40:01 -11155.670044] AUTODETECT spr round 1 (radius: 5) [13:40:39 -8401.420752] AUTODETECT spr round 2 (radius: 10) [13:41:20 -6669.343109] AUTODETECT spr round 3 (radius: 15) [13:42:04 -5606.592206] AUTODETECT spr round 4 (radius: 20) [13:42:52 -4742.582881] AUTODETECT spr round 5 (radius: 25) [13:43:40 -4300.313773] SPR radius for FAST iterations: 25 (autodetect) [13:43:40 -4300.313773] Model parameter optimization (eps = 3.000000) [13:43:53 -4204.126482] FAST spr round 1 (radius: 25) [13:44:35 -3150.608309] FAST spr round 2 (radius: 25) [13:45:16 -2902.631811] FAST spr round 3 (radius: 25) [13:45:57 -2824.733716] FAST spr round 4 (radius: 25) [13:46:38 -2801.287699] FAST spr round 5 (radius: 25) [13:47:18 -2798.800096] FAST spr round 6 (radius: 25) [13:47:58 -2798.799819] Model parameter optimization (eps = 1.000000) [13:48:03 -2791.984714] SLOW spr round 1 (radius: 5) [13:48:49 -2790.596139] SLOW spr round 2 (radius: 5) [13:49:31 -2790.593553] SLOW spr round 3 (radius: 10) [13:50:19 -2788.642105] SLOW spr round 4 (radius: 5) [13:51:01 -2788.379834] SLOW spr round 5 (radius: 5) [13:51:47 -2788.379744] SLOW spr round 6 (radius: 10) [13:52:28 -2786.711418] SLOW spr round 7 (radius: 5) [13:53:13 -2786.711247] SLOW spr round 8 (radius: 10) [13:53:54 -2786.295786] SLOW spr round 9 (radius: 5) [13:54:39 -2786.295749] SLOW spr round 10 (radius: 10) [13:55:19 -2786.295714] SLOW spr round 11 (radius: 15) [13:56:07 -2754.209182] SLOW spr round 12 (radius: 5) [13:56:50 -2750.573384] SLOW spr round 13 (radius: 5) [13:57:34 -2750.573341] SLOW spr round 14 (radius: 10) [13:58:15 -2750.573314] SLOW spr round 15 (radius: 15) [13:59:01 -2750.573292] SLOW spr round 16 (radius: 20) [13:59:51 -2734.772004] SLOW spr round 17 (radius: 5) [14:00:39 -2723.140866] SLOW spr round 18 (radius: 5) [14:01:20 -2723.140853] SLOW spr round 19 (radius: 10) [14:02:04 -2723.140844] SLOW spr round 20 (radius: 15) [14:02:47 -2719.185943] SLOW spr round 21 (radius: 5) [14:03:34 -2719.185936] SLOW spr round 22 (radius: 10) [14:04:15 -2719.185930] SLOW spr round 23 (radius: 15) [14:05:01 -2719.185923] SLOW spr round 24 (radius: 20) [14:05:51 -2711.125421] SLOW spr round 25 (radius: 5) [14:06:39 -2698.259820] SLOW spr round 26 (radius: 5) [14:07:19 -2698.259131] SLOW spr round 27 (radius: 10) [14:08:03 -2698.259103] SLOW spr round 28 (radius: 15) [14:08:45 -2697.658649] SLOW spr round 29 (radius: 5) [14:09:31 -2697.658639] SLOW spr round 30 (radius: 10) [14:10:11 -2697.658634] SLOW spr round 31 (radius: 15) [14:10:55 -2697.658629] SLOW spr round 32 (radius: 20) [14:11:43 -2697.658624] SLOW spr round 33 (radius: 25) [14:12:37 -2684.196274] SLOW spr round 34 (radius: 5) [14:13:20 -2684.114264] SLOW spr round 35 (radius: 10) [14:14:03 -2683.537773] SLOW spr round 36 (radius: 5) [14:14:44 -2682.233282] SLOW spr round 37 (radius: 5) [14:15:27 -2682.233266] SLOW spr round 38 (radius: 10) [14:16:06 -2682.233259] SLOW spr round 39 (radius: 15) [14:16:52 -2679.223705] SLOW spr round 40 (radius: 5) [14:17:35 -2679.223701] SLOW spr round 41 (radius: 10) [14:18:18 -2679.223697] SLOW spr round 42 (radius: 15) [14:19:01 -2679.223693] SLOW spr round 43 (radius: 20) [14:19:53 -2679.223690] SLOW spr round 44 (radius: 25) [14:20:44 -2679.223687] Model parameter optimization (eps = 0.100000) [14:20:47] ML tree search #16, logLikelihood: -2678.500157 [14:20:47 -14594.011423] Initial branch length optimization [14:20:47 -11440.848874] Model parameter optimization (eps = 10.000000) [14:21:04 -11085.920937] AUTODETECT spr round 1 (radius: 5) [14:21:40 -8302.862882] AUTODETECT spr round 2 (radius: 10) [14:22:20 -6399.944097] AUTODETECT spr round 3 (radius: 15) [14:23:03 -5354.534369] AUTODETECT spr round 4 (radius: 20) [14:23:52 -4559.836422] AUTODETECT spr round 5 (radius: 25) [14:24:39 -4095.619563] SPR radius for FAST iterations: 25 (autodetect) [14:24:39 -4095.619563] Model parameter optimization (eps = 3.000000) [14:24:48 -3989.021368] FAST spr round 1 (radius: 25) [14:25:28 -3161.397518] FAST spr round 2 (radius: 25) [14:26:07 -3017.818329] FAST spr round 3 (radius: 25) [14:26:46 -3003.349113] FAST spr round 4 (radius: 25) [14:27:24 -2981.581356] FAST spr round 5 (radius: 25) [14:28:01 -2981.581176] Model parameter optimization (eps = 1.000000) [14:28:05 -2975.506892] SLOW spr round 1 (radius: 5) [14:28:45 -2973.544306] SLOW spr round 2 (radius: 5) [14:29:26 -2964.765470] SLOW spr round 3 (radius: 5) [14:30:06 -2964.107759] SLOW spr round 4 (radius: 5) [14:30:46 -2964.101203] SLOW spr round 5 (radius: 10) [14:31:27 -2963.849398] SLOW spr round 6 (radius: 5) [14:32:08 -2963.849163] SLOW spr round 7 (radius: 10) [14:32:48 -2962.079739] SLOW spr round 8 (radius: 5) [14:33:29 -2962.041123] SLOW spr round 9 (radius: 10) [14:34:09 -2962.040842] SLOW spr round 10 (radius: 15) [14:34:53 -2944.863365] SLOW spr round 11 (radius: 5) [14:35:36 -2932.666468] SLOW spr round 12 (radius: 5) [14:36:18 -2928.341113] SLOW spr round 13 (radius: 5) [14:36:58 -2927.756871] SLOW spr round 14 (radius: 5) [14:37:38 -2914.511346] SLOW spr round 15 (radius: 5) [14:38:17 -2914.510300] SLOW spr round 16 (radius: 10) [14:38:58 -2897.361664] SLOW spr round 17 (radius: 5) [14:39:39 -2885.259145] SLOW spr round 18 (radius: 5) [14:40:20 -2884.089919] SLOW spr round 19 (radius: 5) [14:41:00 -2884.089548] SLOW spr round 20 (radius: 10) [14:41:41 -2884.089545] SLOW spr round 21 (radius: 15) [14:42:24 -2878.327954] SLOW spr round 22 (radius: 5) [14:43:08 -2874.139429] SLOW spr round 23 (radius: 5) [14:43:49 -2874.139315] SLOW spr round 24 (radius: 10) [14:44:31 -2874.139314] SLOW spr round 25 (radius: 15) [14:45:14 -2873.385740] SLOW spr round 26 (radius: 5) [14:45:59 -2873.324951] SLOW spr round 27 (radius: 10) [14:46:40 -2871.188152] SLOW spr round 28 (radius: 5) [14:47:22 -2871.135109] SLOW spr round 29 (radius: 10) [14:48:04 -2871.134641] SLOW spr round 30 (radius: 15) [14:48:47 -2870.376047] SLOW spr round 31 (radius: 5) [14:49:31 -2870.374348] SLOW spr round 32 (radius: 10) [14:50:12 -2870.374030] SLOW spr round 33 (radius: 15) [14:50:55 -2870.373980] SLOW spr round 34 (radius: 20) [14:51:44 -2860.201083] SLOW spr round 35 (radius: 5) [14:52:27 -2852.357623] SLOW spr round 36 (radius: 5) [14:53:09 -2852.357595] SLOW spr round 37 (radius: 10) [14:53:50 -2852.357592] SLOW spr round 38 (radius: 15) [14:54:34 -2852.357591] SLOW spr round 39 (radius: 20) [14:55:22 -2852.357591] SLOW spr round 40 (radius: 25) [14:56:13 -2846.120140] SLOW spr round 41 (radius: 5) [14:56:59 -2846.119346] SLOW spr round 42 (radius: 10) [14:57:42 -2846.015964] SLOW spr round 43 (radius: 5) [14:58:24 -2846.015960] SLOW spr round 44 (radius: 10) [14:59:07 -2846.015960] SLOW spr round 45 (radius: 15) [14:59:51 -2846.015960] SLOW spr round 46 (radius: 20) [15:00:41 -2846.015960] SLOW spr round 47 (radius: 25) [15:01:33 -2846.015958] Model parameter optimization (eps = 0.100000) [15:01:36] ML tree search #17, logLikelihood: -2845.120777 [15:01:36 -14622.306800] Initial branch length optimization [15:01:36 -11495.931795] Model parameter optimization (eps = 10.000000) [15:01:52 -11122.328622] AUTODETECT spr round 1 (radius: 5) [15:02:30 -8306.217436] AUTODETECT spr round 2 (radius: 10) [15:03:10 -6490.268312] AUTODETECT spr round 3 (radius: 15) [15:03:54 -5273.674330] AUTODETECT spr round 4 (radius: 20) [15:04:42 -4691.233741] AUTODETECT spr round 5 (radius: 25) [15:05:29 -4514.961377] SPR radius for FAST iterations: 25 (autodetect) [15:05:29 -4514.961377] Model parameter optimization (eps = 3.000000) [15:05:42 -4363.723868] FAST spr round 1 (radius: 25) [15:06:25 -3567.524396] FAST spr round 2 (radius: 25) [15:07:08 -3448.353228] FAST spr round 3 (radius: 25) [15:07:50 -3413.423324] FAST spr round 4 (radius: 25) [15:08:33 -3384.589434] FAST spr round 5 (radius: 25) [15:09:13 -3376.184995] FAST spr round 6 (radius: 25) [15:09:54 -3376.090394] Model parameter optimization (eps = 1.000000) [15:10:01 -3359.835536] SLOW spr round 1 (radius: 5) [15:10:46 -3336.657677] SLOW spr round 2 (radius: 5) [15:11:29 -3336.205485] SLOW spr round 3 (radius: 5) [15:12:13 -3336.194410] SLOW spr round 4 (radius: 10) [15:12:56 -3334.414353] SLOW spr round 5 (radius: 5) [15:13:42 -3331.497394] SLOW spr round 6 (radius: 5) [15:14:25 -3331.497393] SLOW spr round 7 (radius: 10) [15:15:07 -3330.786261] SLOW spr round 8 (radius: 5) [15:15:51 -3330.786261] SLOW spr round 9 (radius: 10) [15:16:35 -3329.598953] SLOW spr round 10 (radius: 5) [15:17:19 -3329.597569] SLOW spr round 11 (radius: 10) [15:18:03 -3329.597413] SLOW spr round 12 (radius: 15) [15:18:50 -3306.327648] SLOW spr round 13 (radius: 5) [15:19:37 -3289.654009] SLOW spr round 14 (radius: 5) [15:20:20 -3289.648055] SLOW spr round 15 (radius: 10) [15:21:02 -3289.647090] SLOW spr round 16 (radius: 15) [15:21:47 -3287.373783] SLOW spr round 17 (radius: 5) [15:22:34 -3287.373673] SLOW spr round 18 (radius: 10) [15:23:15 -3287.373649] SLOW spr round 19 (radius: 15) [15:24:00 -3245.651306] SLOW spr round 20 (radius: 5) [15:24:44 -3230.475521] SLOW spr round 21 (radius: 5) [15:25:26 -3226.634505] SLOW spr round 22 (radius: 5) [15:26:07 -3226.622246] SLOW spr round 23 (radius: 10) [15:26:48 -3226.621323] SLOW spr round 24 (radius: 15) [15:27:31 -3226.621225] SLOW spr round 25 (radius: 20) [15:28:21 -3224.726804] SLOW spr round 26 (radius: 5) [15:29:06 -3222.250206] SLOW spr round 27 (radius: 5) [15:29:47 -3222.250030] SLOW spr round 28 (radius: 10) [15:30:28 -3221.251498] SLOW spr round 29 (radius: 5) [15:31:11 -3221.251498] SLOW spr round 30 (radius: 10) [15:31:51 -3221.251498] SLOW spr round 31 (radius: 15) [15:32:35 -3221.251498] SLOW spr round 32 (radius: 20) [15:33:25 -3221.251498] SLOW spr round 33 (radius: 25) [15:34:18 -3220.256430] SLOW spr round 34 (radius: 5) [15:35:02 -3216.252794] SLOW spr round 35 (radius: 5) [15:35:44 -3216.252171] SLOW spr round 36 (radius: 10) [15:36:24 -3216.252141] SLOW spr round 37 (radius: 15) [15:37:08 -3216.252139] SLOW spr round 38 (radius: 20) [15:37:57 -3216.252139] SLOW spr round 39 (radius: 25) [15:38:50 -3216.252139] Model parameter optimization (eps = 0.100000) [15:38:53] ML tree search #18, logLikelihood: -3215.103171 [15:38:54 -14614.508952] Initial branch length optimization [15:38:54 -11515.335803] Model parameter optimization (eps = 10.000000) [15:39:14 -11130.312103] AUTODETECT spr round 1 (radius: 5) [15:39:52 -8336.262929] AUTODETECT spr round 2 (radius: 10) [15:40:33 -6322.457262] AUTODETECT spr round 3 (radius: 15) [15:41:19 -5162.231543] AUTODETECT spr round 4 (radius: 20) [15:42:06 -4577.702777] AUTODETECT spr round 5 (radius: 25) [15:42:55 -4267.665892] SPR radius for FAST iterations: 25 (autodetect) [15:42:55 -4267.665892] Model parameter optimization (eps = 3.000000) [15:43:09 -4134.512951] FAST spr round 1 (radius: 25) [15:43:53 -3284.200131] FAST spr round 2 (radius: 25) [15:44:34 -3121.323442] FAST spr round 3 (radius: 25) [15:45:15 -3054.040131] FAST spr round 4 (radius: 25) [15:45:55 -3052.405523] FAST spr round 5 (radius: 25) [15:46:34 -3052.405454] Model parameter optimization (eps = 1.000000) [15:46:37 -3049.658573] SLOW spr round 1 (radius: 5) [15:47:19 -3020.048982] SLOW spr round 2 (radius: 5) [15:48:02 -3019.292985] SLOW spr round 3 (radius: 5) [15:48:43 -3019.292505] SLOW spr round 4 (radius: 10) [15:49:25 -3014.452413] SLOW spr round 5 (radius: 5) [15:50:09 -3014.192391] SLOW spr round 6 (radius: 5) [15:50:51 -3014.192281] SLOW spr round 7 (radius: 10) [15:51:33 -3014.192201] SLOW spr round 8 (radius: 15) [15:52:20 -2911.593932] SLOW spr round 9 (radius: 5) [15:53:04 -2855.852076] SLOW spr round 10 (radius: 5) [15:53:47 -2853.261354] SLOW spr round 11 (radius: 5) [15:54:28 -2853.234110] SLOW spr round 12 (radius: 10) [15:55:09 -2852.906142] SLOW spr round 13 (radius: 5) [15:55:52 -2852.905923] SLOW spr round 14 (radius: 10) [15:56:34 -2851.820162] SLOW spr round 15 (radius: 5) [15:57:17 -2851.819923] SLOW spr round 16 (radius: 10) [15:57:58 -2851.819736] SLOW spr round 17 (radius: 15) [15:58:44 -2848.067946] SLOW spr round 18 (radius: 5) [15:59:28 -2847.493245] SLOW spr round 19 (radius: 5) [16:00:10 -2847.493057] SLOW spr round 20 (radius: 10) [16:00:52 -2847.492868] SLOW spr round 21 (radius: 15) [16:01:35 -2847.492679] SLOW spr round 22 (radius: 20) [16:02:27 -2775.484557] SLOW spr round 23 (radius: 5) [16:03:12 -2729.189560] SLOW spr round 24 (radius: 5) [16:03:53 -2712.500652] SLOW spr round 25 (radius: 5) [16:04:34 -2695.280046] SLOW spr round 26 (radius: 5) [16:05:15 -2681.974065] SLOW spr round 27 (radius: 5) [16:05:56 -2673.890968] SLOW spr round 28 (radius: 5) [16:06:36 -2668.715529] SLOW spr round 29 (radius: 5) [16:07:15 -2668.715258] SLOW spr round 30 (radius: 10) [16:07:57 -2639.742601] SLOW spr round 31 (radius: 5) [16:08:38 -2628.108036] SLOW spr round 32 (radius: 5) [16:09:19 -2627.990356] SLOW spr round 33 (radius: 5) [16:09:58 -2627.990345] SLOW spr round 34 (radius: 10) [16:10:38 -2627.167373] SLOW spr round 35 (radius: 5) [16:11:19 -2627.160909] SLOW spr round 36 (radius: 10) [16:12:00 -2627.160644] SLOW spr round 37 (radius: 15) [16:12:44 -2600.904910] SLOW spr round 38 (radius: 5) [16:13:27 -2600.407040] SLOW spr round 39 (radius: 5) [16:14:07 -2600.406696] SLOW spr round 40 (radius: 10) [16:14:47 -2592.586400] SLOW spr round 41 (radius: 5) [16:15:27 -2592.586253] SLOW spr round 42 (radius: 10) [16:16:07 -2592.586156] SLOW spr round 43 (radius: 15) [16:16:49 -2592.586093] SLOW spr round 44 (radius: 20) [16:17:40 -2554.423451] SLOW spr round 45 (radius: 5) [16:18:24 -2539.950089] SLOW spr round 46 (radius: 5) [16:19:04 -2538.350253] SLOW spr round 47 (radius: 5) [16:19:43 -2538.350246] SLOW spr round 48 (radius: 10) [16:20:24 -2530.619260] SLOW spr round 49 (radius: 5) [16:21:04 -2530.619260] SLOW spr round 50 (radius: 10) [16:21:46 -2530.619260] SLOW spr round 51 (radius: 15) [16:22:30 -2503.137285] SLOW spr round 52 (radius: 5) [16:23:14 -2503.135388] SLOW spr round 53 (radius: 10) [16:23:55 -2502.459173] SLOW spr round 54 (radius: 5) [16:24:37 -2502.458476] SLOW spr round 55 (radius: 10) [16:25:18 -2502.457943] SLOW spr round 56 (radius: 15) [16:26:02 -2502.073106] SLOW spr round 57 (radius: 5) [16:26:46 -2502.072794] SLOW spr round 58 (radius: 10) [16:27:28 -2502.072556] SLOW spr round 59 (radius: 15) [16:28:11 -2502.072374] SLOW spr round 60 (radius: 20) [16:29:03 -2500.235890] SLOW spr round 61 (radius: 5) [16:29:47 -2498.678633] SLOW spr round 62 (radius: 5) [16:30:29 -2498.678270] SLOW spr round 63 (radius: 10) [16:31:10 -2498.678242] SLOW spr round 64 (radius: 15) [16:31:54 -2498.678238] SLOW spr round 65 (radius: 20) [16:32:46 -2498.678237] SLOW spr round 66 (radius: 25) [16:33:42 -2493.399597] SLOW spr round 67 (radius: 5) [16:34:27 -2493.384831] SLOW spr round 68 (radius: 10) [16:35:09 -2492.722242] SLOW spr round 69 (radius: 5) [16:35:52 -2492.722238] SLOW spr round 70 (radius: 10) [16:36:35 -2492.722236] SLOW spr round 71 (radius: 15) [16:37:20 -2492.722235] SLOW spr round 72 (radius: 20) [16:38:13 -2492.722234] SLOW spr round 73 (radius: 25) [16:39:10 -2492.583286] SLOW spr round 74 (radius: 5) [16:39:56 -2492.579854] SLOW spr round 75 (radius: 10) [16:40:40 -2492.578360] SLOW spr round 76 (radius: 15) [16:41:27 -2492.577678] SLOW spr round 77 (radius: 20) [16:42:21 -2491.332271] SLOW spr round 78 (radius: 5) [16:43:07 -2491.332062] SLOW spr round 79 (radius: 10) [16:43:50 -2491.332052] SLOW spr round 80 (radius: 15) [16:44:36 -2491.332052] SLOW spr round 81 (radius: 20) [16:45:29 -2491.332052] SLOW spr round 82 (radius: 25) [16:46:28 -2491.332052] Model parameter optimization (eps = 0.100000) [16:46:33] ML tree search #19, logLikelihood: -2491.107890 [16:46:33 -14625.138309] Initial branch length optimization [16:46:34 -11462.510380] Model parameter optimization (eps = 10.000000) [16:46:50 -11093.985059] AUTODETECT spr round 1 (radius: 5) [16:47:28 -8382.283515] AUTODETECT spr round 2 (radius: 10) [16:48:10 -6367.965938] AUTODETECT spr round 3 (radius: 15) [16:48:55 -5464.619725] AUTODETECT spr round 4 (radius: 20) [16:49:43 -4905.403826] AUTODETECT spr round 5 (radius: 25) [16:50:33 -4436.220439] SPR radius for FAST iterations: 25 (autodetect) [16:50:33 -4436.220439] Model parameter optimization (eps = 3.000000) [16:50:45 -4297.252972] FAST spr round 1 (radius: 25) [16:51:27 -3342.256360] FAST spr round 2 (radius: 25) [16:52:08 -3218.439318] FAST spr round 3 (radius: 25) [16:52:50 -3184.868341] FAST spr round 4 (radius: 25) [16:53:29 -3184.703815] FAST spr round 5 (radius: 25) [16:54:08 -3184.654508] Model parameter optimization (eps = 1.000000) [16:54:12 -3179.200533] SLOW spr round 1 (radius: 5) [16:54:54 -3177.179275] SLOW spr round 2 (radius: 5) [16:55:36 -3177.175792] SLOW spr round 3 (radius: 10) [16:56:19 -3172.134015] SLOW spr round 4 (radius: 5) [16:57:02 -3171.363938] SLOW spr round 5 (radius: 5) [16:57:44 -3171.363729] SLOW spr round 6 (radius: 10) [16:58:26 -3171.105311] SLOW spr round 7 (radius: 5) [16:59:09 -3171.104106] SLOW spr round 8 (radius: 10) [16:59:51 -3171.104003] SLOW spr round 9 (radius: 15) [17:00:36 -3168.751583] SLOW spr round 10 (radius: 5) [17:01:20 -3168.588058] SLOW spr round 11 (radius: 5) [17:02:01 -3168.457345] SLOW spr round 12 (radius: 5) [17:02:41 -3168.455879] SLOW spr round 13 (radius: 10) [17:03:22 -3168.455855] SLOW spr round 14 (radius: 15) [17:04:07 -3164.191807] SLOW spr round 15 (radius: 5) [17:04:50 -3162.033429] SLOW spr round 16 (radius: 5) [17:05:30 -3162.033377] SLOW spr round 17 (radius: 10) [17:06:10 -3159.468062] SLOW spr round 18 (radius: 5) [17:06:51 -3159.399800] SLOW spr round 19 (radius: 10) [17:07:32 -3159.399788] SLOW spr round 20 (radius: 15) [17:08:15 -3159.399777] SLOW spr round 21 (radius: 20) [17:09:05 -3150.930363] SLOW spr round 22 (radius: 5) [17:09:49 -3150.897009] SLOW spr round 23 (radius: 10) [17:10:31 -3150.260185] SLOW spr round 24 (radius: 5) [17:11:13 -3150.260159] SLOW spr round 25 (radius: 10) [17:11:54 -3150.260152] SLOW spr round 26 (radius: 15) [17:12:38 -3148.497363] SLOW spr round 27 (radius: 5) [17:13:22 -3148.357146] SLOW spr round 28 (radius: 5) [17:14:03 -3147.014424] SLOW spr round 29 (radius: 5) [17:14:43 -3147.014033] SLOW spr round 30 (radius: 10) [17:15:24 -3147.013724] SLOW spr round 31 (radius: 15) [17:16:08 -3147.013484] SLOW spr round 32 (radius: 20) [17:16:58 -3146.870004] SLOW spr round 33 (radius: 5) [17:17:41 -3144.909901] SLOW spr round 34 (radius: 5) [17:18:22 -3144.909786] SLOW spr round 35 (radius: 10) [17:19:02 -3144.909696] SLOW spr round 36 (radius: 15) [17:19:46 -3144.909625] SLOW spr round 37 (radius: 20) [17:20:34 -3144.909569] SLOW spr round 38 (radius: 25) [17:21:29 -3141.405367] SLOW spr round 39 (radius: 5) [17:22:12 -3136.959740] SLOW spr round 40 (radius: 5) [17:22:53 -3136.959718] SLOW spr round 41 (radius: 10) [17:23:33 -3133.667516] SLOW spr round 42 (radius: 5) [17:24:15 -3133.666279] SLOW spr round 43 (radius: 10) [17:24:55 -3133.666188] SLOW spr round 44 (radius: 15) [17:25:39 -3127.251492] SLOW spr round 45 (radius: 5) [17:26:22 -3127.250540] SLOW spr round 46 (radius: 10) [17:27:03 -3127.250467] SLOW spr round 47 (radius: 15) [17:27:46 -3127.250458] SLOW spr round 48 (radius: 20) [17:28:35 -3125.737430] SLOW spr round 49 (radius: 5) [17:29:19 -3124.365552] SLOW spr round 50 (radius: 5) [17:29:59 -3124.365527] SLOW spr round 51 (radius: 10) [17:30:39 -3124.365516] SLOW spr round 52 (radius: 15) [17:31:24 -3100.211505] SLOW spr round 53 (radius: 5) [17:32:07 -3097.902165] SLOW spr round 54 (radius: 5) [17:32:49 -3097.899230] SLOW spr round 55 (radius: 10) [17:33:31 -3097.899228] SLOW spr round 56 (radius: 15) [17:34:19 -3097.899228] SLOW spr round 57 (radius: 20) [17:35:08 -3096.560728] SLOW spr round 58 (radius: 5) [17:35:56 -3096.560716] SLOW spr round 59 (radius: 10) [17:36:38 -3096.560716] SLOW spr round 60 (radius: 15) [17:37:25 -3096.560716] SLOW spr round 61 (radius: 20) [17:38:14 -3096.560716] SLOW spr round 62 (radius: 25) [17:39:13 -3079.290886] SLOW spr round 63 (radius: 5) [17:39:58 -3073.836815] SLOW spr round 64 (radius: 5) [17:40:42 -3073.836815] SLOW spr round 65 (radius: 10) [17:41:24 -3073.836814] SLOW spr round 66 (radius: 15) [17:42:12 -3073.836814] SLOW spr round 67 (radius: 20) [17:43:00 -3073.836814] SLOW spr round 68 (radius: 25) [17:43:58 -3073.836814] Model parameter optimization (eps = 0.100000) [17:44:02] ML tree search #20, logLikelihood: -3073.196780 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.056759,0.057814) (0.000057,0.238040) (0.567588,0.532090) (0.375596,1.849585) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -2491.107890 AIC score: 8736.215780 / AICc score: 7058748.215780 / BIC score: 8885.327554 Free parameters (model + branch lengths): 1877 WARNING: Number of free parameters (K=1877) is larger than alignment size (n=8). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 676 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P12111/3_mltree/P12111.raxml.log Analysis started: 04-Jun-2021 03:53:03 / finished: 04-Jun-2021 21:37:05 Elapsed time: 63842.417 seconds Consumed energy: 6201.595 Wh (= 31 km in an electric car, or 155 km with an e-scooter!)