RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 14:11:04 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/2_msa/P11473_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/3_mltree/P11473.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622632264 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/2_msa/P11473_nogap_msa.fasta [00:00:00] Loaded alignment with 996 taxa and 427 sites WARNING: Sequences tr_A0A1D5PI18_A0A1D5PI18_CHICK_9031 and sp_O42392_VDR_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_G1NE58_G1NE58_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_A0A226MEB0_A0A226MEB0_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_A0A226PRB5_A0A226PRB5_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q8JHU2_Q8JHU2_CHICK_9031 and tr_G1NGM9_G1NGM9_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2I2ZPR1_A0A2I2ZPR1_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_F6Z1J2_F6Z1J2_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_U3D5Q9_U3D5Q9_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_G7NY91_G7NY91_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2I3LYC8_A0A2I3LYC8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A0D9RBL7_A0A0D9RBL7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2K5KI47_A0A2K5KI47_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2K6BM26_A0A2K6BM26_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2K5YIH9_A0A2K5YIH9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2R9AUD5_A0A2R9AUD5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_F7F982_F7F982_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_G7PYE4_G7PYE4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A0A0MUI7_A0A0A0MUI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A0D9S4R5_A0A0D9S4R5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A2K5M1G3_A0A2K5M1G3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A2K6DK84_A0A2K6DK84_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A2K5XT02_A0A2K5XT02_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R4B5_G1R4B5_NOMLE_61853 and tr_G3QVQ9_G3QVQ9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R4B5_G1R4B5_NOMLE_61853 and tr_A0A2I3TE66_A0A2I3TE66_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R4B5_G1R4B5_NOMLE_61853 and tr_A0A2R9BKJ5_A0A2R9BKJ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3I0S8_G3I0S8_CRIGR_10029 and sp_P22449_HNF4A_RAT_10116 are exactly identical! WARNING: Sequences tr_G3I731_G3I731_CRIGR_10029 and sp_Q62755_NR1H2_RAT_10116 are exactly identical! WARNING: Sequences tr_G3QS62_G3QS62_GORGO_9595 and tr_K7BSQ5_K7BSQ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QS62_G3QS62_GORGO_9595 and tr_F6XLC6_F6XLC6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QS62_G3QS62_GORGO_9595 and tr_A0A2R8ZW74_A0A2R8ZW74_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QWP1_G3QWP1_GORGO_9595 and tr_A0A2R9A677_A0A2R9A677_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and sp_Q5REL6_RXRG_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_A0A2I3SXI5_A0A2I3SXI5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and sp_P48443_RXRG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_U3FF43_U3FF43_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_A0A096MW06_A0A096MW06_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_A0A0D9REB7_A0A0D9REB7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_A0A2K5KI36_A0A2K5KI36_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_A0A2K5XT39_A0A2K5XT39_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3S7Z4_G3S7Z4_GORGO_9595 and tr_A0A2R9AQF8_A0A2R9AQF8_PANPA_9597 are exactly identical! WARNING: Sequences tr_E2QXI5_E2QXI5_CANLF_9615 and tr_A0A2U3X0X1_A0A2U3X0X1_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2QXI5_E2QXI5_CANLF_9615 and tr_A0A2U3YN11_A0A2U3YN11_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2I3SPS8_A0A2I3SPS8_PANTR_9598 and sp_Q13133_NR1H3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3SPS8_A0A2I3SPS8_PANTR_9598 and tr_A0A2R9BRK5_A0A2R9BRK5_PANPA_9597 are exactly identical! WARNING: Sequences sp_A2T7D9_NR1I3_PANTR_9598 and sp_Q14994_NR1I3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7BXK6_K7BXK6_PANTR_9598 and sp_P11473_VDR_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7BXK6_K7BXK6_PANTR_9598 and tr_A0A2R9BG75_A0A2R9BG75_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6SCR7_F6SCR7_HORSE_9796 and tr_A0A2U3WXG0_A0A2U3WXG0_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A088AMS7_A0A088AMS7_APIME_7460 and tr_A0A2A3EDK0_A0A2A3EDK0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NVI3_A0A158NVI3_ATTCE_12957 and tr_A0A195BPI2_A0A195BPI2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A1P6BIE8_A0A1P6BIE8_BRUMA_6279 and tr_A0A0R3QVP8_A0A0R3QVP8_9BILA_42155 are exactly identical! WARNING: Sequences tr_F6T760_F6T760_MACMU_9544 and tr_A0A0D9R069_A0A0D9R069_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6U1W4_F6U1W4_MACMU_9544 and tr_G7PJA3_G7PJA3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6U1W4_F6U1W4_MACMU_9544 and tr_A0A096NC34_A0A096NC34_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6U1W4_F6U1W4_MACMU_9544 and tr_A0A0D9S162_A0A0D9S162_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6U1W4_F6U1W4_MACMU_9544 and tr_A0A2K5NPA3_A0A2K5NPA3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6U1W4_F6U1W4_MACMU_9544 and tr_A0A2K6BCT3_A0A2K6BCT3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6U1W4_F6U1W4_MACMU_9544 and tr_A0A2K5XS38_A0A2K5XS38_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7FCC8_F7FCC8_MACMU_9544 and sp_Q8MIM3_NR1I3_MACMU_9544 are exactly identical! WARNING: Sequences tr_F7FCC8_F7FCC8_MACMU_9544 and tr_A0A2K6BPR6_A0A2K6BPR6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HBP3_F7HBP3_MACMU_9544 and tr_A0A2R8M4N9_A0A2R8M4N9_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7HBP3_F7HBP3_MACMU_9544 and tr_A0A0D9RNS6_A0A0D9RNS6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HBP3_F7HBP3_MACMU_9544 and tr_A0A2K5NHD6_A0A2K5NHD6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HBP3_F7HBP3_MACMU_9544 and tr_A0A2K6E2F4_A0A2K6E2F4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HBP3_F7HBP3_MACMU_9544 and tr_A0A2K5ZHL6_A0A2K5ZHL6_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HFI3_F7HFI3_MACMU_9544 and tr_G7PHP7_G7PHP7_MACFA_9541 are exactly identical! WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V0RUN6_A0A0V0RUN6_9BILA_6336 are exactly identical! WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A091VV96_A0A091VV96_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A218V9F4_A0A218V9F4_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1MTT1_F1MTT1_BOVIN_9913 and sp_Q3SZL0_NR1H4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G5E5J5_G5E5J5_BOVIN_9913 and sp_Q28037_VDR_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3WAY0_M3WAY0_FELCA_9685 and tr_A0A2U3YZV6_A0A2U3YZV6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_U3JUY4_U3JUY4_FICAL_59894 and tr_A0A091KHJ0_A0A091KHJ0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3JUY4_U3JUY4_FICAL_59894 and tr_A0A087QYK9_A0A087QYK9_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3JUY4_U3JUY4_FICAL_59894 and tr_A0A091GNL5_A0A091GNL5_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A096N4R7_A0A096N4R7_PAPAN_9555 and tr_A0A0D9R2M3_A0A0D9R2M3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A151MIK8_A0A151MIK8_ALLMI_8496 and tr_A0A3Q0FYR5_A0A3Q0FYR5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A087QQN2_A0A087QQN2_APTFO_9233 and tr_A0A093HIV6_A0A093HIV6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A087QY68_A0A087QY68_APTFO_9233 and tr_A0A091VQS6_A0A091VQS6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0V1DC20_A0A0V1DC20_TRIBR_45882 and tr_A0A0V0UM22_A0A0V0UM22_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DC20_A0A0V1DC20_TRIBR_45882 and tr_A0A0V0TLL1_A0A0V0TLL1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WPT1_A0A0V0WPT1_9BILA_92179 and tr_A0A0V1KN98_A0A0V1KN98_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0X104_A0A0V0X104_9BILA_92179 and tr_A0A0V0VYE3_A0A0V0VYE3_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0X104_A0A0V0X104_9BILA_92179 and tr_A0A0V1LAZ7_A0A0V1LAZ7_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0X104_A0A0V0X104_9BILA_92179 and tr_A0A0V1A7P5_A0A0V1A7P5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0X104_A0A0V0X104_9BILA_92179 and tr_A0A0V1PEM8_A0A0V1PEM8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0X104_A0A0V0X104_9BILA_92179 and tr_A0A0V0U7W0_A0A0V0U7W0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A151WMY9_A0A151WMY9_9HYME_64791 and tr_A0A195D493_A0A195D493_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3I3P5_A0A1S3I3P5_LINUN_7574 and tr_A0A1S3I686_A0A1S3I686_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3MDW7_A0A1S3MDW7_SALSA_8030 and tr_C0HBA1_C0HBA1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2D0QV01_A0A2D0QV01_ICTPU_7998 and tr_A0A2D0QWX5_A0A2D0QWX5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QV01_A0A2D0QV01_ICTPU_7998 and tr_A0A2D0QXL7_A0A2D0QXL7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V3D1_A0A2U3V3D1_TURTR_9739 and tr_A0A383ZXZ5_A0A383ZXZ5_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3V9Y2_A0A2U3V9Y2_TURTR_9739 and tr_A0A2U4CDM5_A0A2U4CDM5_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4CFH0_A0A2U4CFH0_TURTR_9739 and tr_A0A2Y9LNQ6_A0A2Y9LNQ6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WLY4_A0A2U3WLY4_ODORO_9708 and tr_A0A2Y9LE34_A0A2Y9LE34_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 96 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473.raxml.reduced.phy Alignment comprises 1 partitions and 427 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 427 Gaps: 24.41 % Invariant sites: 0.70 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/3_mltree/P11473.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 107 / 8560 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -224719.451833 [00:00:00 -224719.451833] Initial branch length optimization [00:00:01 -154988.050136] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -154737.853573 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.102043,0.175887) (0.126749,0.274081) (0.370477,0.649339) (0.400731,1.763646) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11473/4_raxmlng_ancestral/P11473.raxml.log Analysis started: 02-Jun-2021 14:11:04 / finished: 02-Jun-2021 14:11:48 Elapsed time: 43.923 seconds