RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:13:08 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/2_msa/P11161_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/3_mltree/P11161.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805188 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/2_msa/P11161_nogap_msa.fasta [00:00:00] Loaded alignment with 993 taxa and 476 sites WARNING: Sequences sp_Q9JHX2_SP5_MOUSE_10090 and tr_A0A0G2JUC1_A0A0G2JUC1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XWK5_M3XWK5_MUSPF_9669 and tr_E2RLH9_E2RLH9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XWK5_M3XWK5_MUSPF_9669 and tr_M3W4H4_M3W4H4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XWK5_M3XWK5_MUSPF_9669 and tr_A0A2U3W2R5_A0A2U3W2R5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XWK5_M3XWK5_MUSPF_9669 and tr_A0A2U3YBT4_A0A2U3YBT4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2I3HMY6_A0A2I3HMY6_NOMLE_61853 and tr_A0A2J8WR43_A0A2J8WR43_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HTM5_A0A2I3HTM5_NOMLE_61853 and tr_A0A2Y9JQQ2_A0A2Y9JQQ2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QZA0_G1QZA0_NOMLE_61853 and sp_Q6BEB4_SP5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_H2PPS8_H2PPS8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_H2QVV4_H2QVV4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and sp_Q06889_EGR3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_U3CAC4_U3CAC4_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_A0A2I3N8T7_A0A2I3N8T7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_A0A0D9RUT4_A0A0D9RUT4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_A0A2K5LLC0_A0A2K5LLC0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_A0A2K6CKV5_A0A2K6CKV5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_A0A2K5XM19_A0A2K5XM19_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S103_G1S103_NOMLE_61853 and tr_A0A2R9A862_A0A2R9A862_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7EVK2_K7EVK2_PONAB_9601 and tr_A0A0D9QYY3_A0A0D9QYY3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2Q1Y5_H2Q1Y5_PANTR_9598 and sp_P11161_EGR2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2Q1Y5_H2Q1Y5_PANTR_9598 and tr_A0A2R9BFX0_A0A2R9BFX0_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QI47_H2QI47_PANTR_9598 and tr_A0A2R9B6C1_A0A2R9B6C1_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_F7FJJ0_F7FJJ0_MACMU_9544 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_A0A2I3LF48_A0A2I3LF48_PAPAN_9555 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_A0A0D9RKZ3_A0A0D9RKZ3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_A0A2K5KHT5_A0A2K5KHT5_CERAT_9531 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_A0A2K6E6R7_A0A2K6E6R7_MACNE_9545 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_A0A2K5Y8X5_A0A2K5Y8X5_MANLE_9568 are exactly identical! WARNING: Sequences tr_K7CXB8_K7CXB8_PANTR_9598 and tr_A0A2R9A849_A0A2R9A849_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A158P188_A0A158P188_ATTCE_12957 and tr_F4WBI7_F4WBI7_ACREC_103372 are exactly identical! WARNING: Sequences sp_P19544_WT1_HUMAN_9606 and tr_A0A2U3WCF8_A0A2U3WCF8_ODORO_9708 are exactly identical! WARNING: Sequences tr_F6VBL3_F6VBL3_MACMU_9544 and tr_G7PES2_G7PES2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VBL3_F6VBL3_MACMU_9544 and tr_A0A2K5NV52_A0A2K5NV52_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6VBL3_F6VBL3_MACMU_9544 and tr_A0A2K6AVI4_A0A2K6AVI4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6VBL3_F6VBL3_MACMU_9544 and tr_A0A2K5XWD6_A0A2K5XWD6_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HPZ3_F7HPZ3_MACMU_9544 and tr_F6SBI0_F6SBI0_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7HPZ3_F7HPZ3_MACMU_9544 and tr_A0A0D9RR78_A0A0D9RR78_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HPZ3_F7HPZ3_MACMU_9544 and tr_A0A2K5NKQ4_A0A2K5NKQ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HPZ3_F7HPZ3_MACMU_9544 and tr_A0A2K6D4H8_A0A2K6D4H8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0Z3A3_H0Z3A3_TAEGU_59729 and tr_A0A093G2G0_A0A093G2G0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G7PDE3_G7PDE3_MACFA_9541 and tr_A0A2K5ZBR1_A0A2K5ZBR1_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1MAU9_F1MAU9_BOVIN_9913 and sp_Q9GL32_EGR4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A096MVT7_A0A096MVT7_PAPAN_9555 and tr_A0A2K6DMB6_A0A2K6DMB6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MVT7_A0A096MVT7_PAPAN_9555 and tr_A0A2K5XRA4_A0A2K5XRA4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A091ECW1_A0A091ECW1_CORBR_85066 and tr_A0A093GT64_A0A093GT64_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A0V1CKG2_A0A0V1CKG2_TRIBR_45882 and tr_A0A0V1CN27_A0A0V1CN27_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V1CRA3_A0A0V1CRA3_TRIBR_45882 and tr_A0A0V0WUP2_A0A0V0WUP2_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CRA3_A0A0V1CRA3_TRIBR_45882 and tr_A0A0V1PCI0_A0A0V1PCI0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DEY9_A0A0V1DEY9_TRIBR_45882 and tr_A0A0V0X9L0_A0A0V0X9L0_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0VVU3_A0A0V0VVU3_9BILA_181606 and tr_A0A0V1L5R6_A0A0V1L5R6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0VVU3_A0A0V0VVU3_9BILA_181606 and tr_A0A0V1PHZ4_A0A0V1PHZ4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0VVU3_A0A0V0VVU3_9BILA_181606 and tr_A0A0V0TX38_A0A0V0TX38_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1L7Q0_A0A0V1L7Q0_9BILA_6335 and tr_A0A0V0U1N5_A0A0V0U1N5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A151WWC8_A0A151WWC8_9HYME_64791 and tr_A0A195BHK2_A0A195BHK2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A2D0QTE8_A0A2D0QTE8_ICTPU_7998 and tr_A0A2D0QTF9_A0A2D0QTF9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QTE8_A0A2D0QTE8_ICTPU_7998 and tr_A0A2D0QVE1_A0A2D0QVE1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RE42_A0A2D0RE42_ICTPU_7998 and tr_A0A2D0RE61_A0A2D0RE61_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5MB90_A0A2K5MB90_CERAT_9531 and tr_A0A2K6ASV0_A0A2K6ASV0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U3UZH1_A0A2U3UZH1_TURTR_9739 and tr_A0A2Y9F2W7_A0A2Y9F2W7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AD72_A0A2U4AD72_TURTR_9739 and tr_A0A2Y9MTK4_A0A2Y9MTK4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B722_A0A2U4B722_TURTR_9739 and tr_A0A2Y9N1B7_A0A2Y9N1B7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CDE4_A0A2U4CDE4_TURTR_9739 and tr_A0A2Y9PA88_A0A2Y9PA88_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3X549_A0A2U3X549_ODORO_9708 and tr_A0A2U3Z674_A0A2U3Z674_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9M8U7_A0A2Y9M8U7_DELLE_9749 and tr_A0A383YYG8_A0A383YYG8_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 64 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161.raxml.reduced.phy Alignment comprises 1 partitions and 476 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 476 Gaps: 43.63 % Invariant sites: 0.84 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/3_mltree/P11161.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 119 / 9520 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -369764.181889 [00:00:00 -369764.181889] Initial branch length optimization [00:00:01 -201665.433988] Model parameter optimization (eps = 0.100000) [00:01:00] Tree #1, final logLikelihood: -200843.882051 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.057171,0.023668) (0.132976,1.284553) (0.238140,0.450547) (0.571712,1.260317) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P11161/4_raxmlng_ancestral/P11161.raxml.log Analysis started: 04-Jun-2021 14:13:08 / finished: 04-Jun-2021 14:14:13 Elapsed time: 65.184 seconds