RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:20:53 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/2_msa/P10916_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/3_mltree/P10916.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647252 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/2_msa/P10916_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 166 sites WARNING: Sequences tr_B4R5D9_B4R5D9_DROSI_7240 and sp_P40423_SQH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R5D9_B4R5D9_DROSI_7240 and tr_B4I0E0_B4I0E0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R5D9_B4R5D9_DROSI_7240 and tr_Q29GG1_Q29GG1_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R5D9_B4R5D9_DROSI_7240 and tr_B3MQ57_B3MQ57_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R5D9_B4R5D9_DROSI_7240 and tr_A0A0Q9W781_A0A0Q9W781_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R5D9_B4R5D9_DROSI_7240 and tr_A0A1W4VT32_A0A1W4VT32_DROFC_30025 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_A0A158NL29_A0A158NL29_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_F4WFY6_F4WFY6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_E2BVC8_E2BVC8_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_A0A026WWH7_A0A026WWH7_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_A0A151XBM2_A0A151XBM2_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_A0A195BH38_A0A195BH38_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_A0A195F1Q4_A0A195F1Q4_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2ASM0_E2ASM0_CAMFO_104421 and tr_A0A195BXV0_A0A195BXV0_9HYME_456900 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_G1MQI0_G1MQI0_MELGA_9103 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_F7BYZ9_F7BYZ9_HORSE_9796 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_W5Q2S8_W5Q2S8_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_Q1LZF9_Q1LZF9_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_A0A226MQ06_A0A226MQ06_CALSU_9009 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_A0A226NHW2_A0A226NHW2_COLVI_9014 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_A0A2Y9D9F6_A0A2Y9D9F6_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P02612_MLRM_CHICK_9031 and tr_A0A384CNH8_A0A384CNH8_URSMA_29073 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_G1NB52_G1NB52_MELGA_9103 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_B5FY91_B5FY91_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_H0ZIC7_H0ZIC7_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_U3JUX4_U3JUX4_FICAL_59894 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_R0KEE7_R0KEE7_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A151NEL7_A0A151NEL7_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A091J5K8_A0A091J5K8_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A093Q0Y0_A0A093Q0Y0_9PASS_328815 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A091VE07_A0A091VE07_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A087RBH1_A0A087RBH1_APTFO_9233 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A093H668_A0A093H668_STRCA_441894 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A091VTG6_A0A091VTG6_OPIHO_30419 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A099ZMH3_A0A099ZMH3_TINGU_94827 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A091H511_A0A091H511_9AVES_55661 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A0A0A4W9_A0A0A0A4W9_CHAVO_50402 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A2I0MWL8_A0A2I0MWL8_COLLI_8932 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A091HNI9_A0A091HNI9_CALAN_9244 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A1U7SE28_A0A1U7SE28_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A218UV43_A0A218UV43_9PASE_299123 are exactly identical! WARNING: Sequences sp_P24032_MLRN_CHICK_9031 and tr_A0A226MBS5_A0A226MBS5_CALSU_9009 are exactly identical! WARNING: Sequences sp_P97457_MLRS_MOUSE_10090 and sp_P04466_MLRS_RAT_10116 are exactly identical! WARNING: Sequences sp_P97457_MLRS_MOUSE_10090 and tr_A0A1S3EU17_A0A1S3EU17_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P97457_MLRS_MOUSE_10090 and tr_A0A1U7Q6R6_A0A1U7Q6R6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A2I3GRY6_A0A2I3GRY6_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_G1P466_G1P466_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_G3IA94_G3IA94_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_G3R718_G3R718_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A2J8XGQ4_A0A2J8XGQ4_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A2J8MP60_A0A2J8MP60_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_F7GDT3_F7GDT3_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_I3M6T5_I3M6T5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and sp_O14950_ML12B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_F6RFU8_F6RFU8_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_G5CAY1_G5CAY1_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_G3SU36_G3SU36_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_G3W9Q8_G3W9Q8_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_F7IJT9_F7IJT9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_L5K200_L5K200_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_M3XE65_M3XE65_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A096NC68_A0A096NC68_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A0D9RYD7_A0A0D9RYD7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A1S2ZIM3_A0A1S2ZIM3_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A1S3G3L6_A0A1S3G3L6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A1U7UVZ0_A0A1U7UVZ0_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A3Q0CHM4_A0A3Q0CHM4_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A2K5LT34_A0A2K5LT34_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A2K5XNM9_A0A2K5XNM9_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q3THE2_ML12B_MOUSE_10090 and tr_A0A2R8ZG22_A0A2R8ZG22_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_E2QY85_E2QY85_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_F6YAZ9_F6YAZ9_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_W5PKY9_W5PKY9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_I3M6T0_I3M6T0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_G3T7V0_G3T7V0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_F7HIB4_F7HIB4_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A287A0J0_A0A287A0J0_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_G1M1W1_G1M1W1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and sp_Q5E9E2_MYL9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_L5K2Z4_L5K2Z4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A337S230_A0A337S230_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A096MYE5_A0A096MYE5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A0D9RYD9_A0A0D9RYD9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A1S3G3L1_A0A1S3G3L1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A3Q0DL16_A0A3Q0DL16_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2K5NI55_A0A2K5NI55_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2K5XVQ7_A0A2K5XVQ7_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2U3V017_A0A2U3V017_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2U3WST1_A0A2U3WST1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2U3X8R3_A0A2U3X8R3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2Y9E9J2_A0A2Y9E9J2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2Y9IT76_A0A2Y9IT76_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2Y9LBH0_A0A2Y9LBH0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A2Y9FPW4_A0A2Y9FPW4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A384C0W9_A0A384C0W9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y117_M3Y117_MUSPF_9669 and tr_A0A384AX25_A0A384AX25_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YLR9_M3YLR9_MUSPF_9669 and tr_A0A2U3VQC2_A0A2U3VQC2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YLR9_M3YLR9_MUSPF_9669 and tr_A0A2U3Y2W7_A0A2U3Y2W7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YLR9_M3YLR9_MUSPF_9669 and tr_A0A2Y9LK74_A0A2Y9LK74_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YLR9_M3YLR9_MUSPF_9669 and tr_A0A384BN14_A0A384BN14_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2I3GV71_A0A2I3GV71_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G1NSR6_G1NSR6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G3GXV8_G3GXV8_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G3RR26_G3RR26_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and sp_Q5RBA4_MYL9_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G1SDR2_G1SDR2_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_F1P634_F1P634_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_H2QKA3_H2QKA3_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_H0WHF0_H0WHF0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_H0VRA0_H0VRA0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and sp_P24844_MYL9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G7N4X7_G7N4X7_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G5B837_G5B837_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_H1A1N6_H1A1N6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_F7IBQ4_F7IBQ4_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and sp_P29269_MYL9_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G1LU51_G1LU51_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_G7PGH0_G7PGH0_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_L5JXG5_L5JXG5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2I2U033_A0A2I2U033_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_U3KDZ5_U3KDZ5_FICAL_59894 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A096NUK6_A0A096NUK6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A0D9RCB0_A0A0D9RCB0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A0Q3M7R3_A0A0Q3M7R3_AMAAE_12930 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A091E7K6_A0A091E7K6_CORBR_85066 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A091JC71_A0A091JC71_EGRGA_188379 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A093PQ57_A0A093PQ57_9PASS_328815 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A091WZE0_A0A091WZE0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A091WE36_A0A091WE36_OPIHO_30419 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A091GDQ4_A0A091GDQ4_9AVES_55661 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A0A0AMW1_A0A0A0AMW1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A091HUM2_A0A091HUM2_CALAN_9244 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A1S3EQB8_A0A1S3EQB8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A1V4JEX6_A0A1V4JEX6_PATFA_372326 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A218UJ79_A0A218UJ79_9PASE_299123 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2K5LRP2_A0A2K5LRP2_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2K6E2R2_A0A2K6E2R2_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2K5XH89_A0A2K5XH89_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2R9C3V1_A0A2R9C3V1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2U3VEU7_A0A2U3VEU7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2U3YFW2_A0A2U3YFW2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2Y9ILT1_A0A2Y9ILT1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2Y9PRI3_A0A2Y9PRI3_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A2Y9ELG0_A0A2Y9ELG0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Z255_M3Z255_MUSPF_9669 and tr_A0A384B0L1_A0A384B0L1_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2MPY7_H2MPY7_ORYLA_8090 and tr_I3KTH7_I3KTH7_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MPY7_H2MPY7_ORYLA_8090 and tr_A0A2I4BBJ1_A0A2I4BBJ1_9TELE_52670 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_G3RNC1_G3RNC1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_H2QV56_H2QV56_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and sp_Q9BUA6_MYL10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_F7H6W4_F7H6W4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_G7P148_G7P148_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_A0A2I3LL13_A0A2I3LL13_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_A0A1U7TIP4_A0A1U7TIP4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_A0A2K5LVI7_A0A2K5LVI7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_A0A2K6B1S2_A0A2K6B1S2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_A0A2K6A1R9_A0A2K6A1R9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RA51_G1RA51_NOMLE_61853 and tr_A0A2R9CEM9_A0A2R9CEM9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3IN61_G3IN61_CRIGR_10029 and tr_L5KI22_L5KI22_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G3QQA8_G3QQA8_GORGO_9595 and sp_P10916_MLRV_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QQE6_G3QQE6_GORGO_9595 and tr_H2QUI2_H2QUI2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QQE6_G3QQE6_GORGO_9595 and sp_Q01449_MLRA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RLG4_G3RLG4_GORGO_9595 and tr_H2QAX2_H2QAX2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RLG4_G3RLG4_GORGO_9595 and sp_Q96A32_MLRS_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RLG4_G3RLG4_GORGO_9595 and tr_A0A2R8ZR80_A0A2R8ZR80_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SFU6_G3SFU6_GORGO_9595 and sp_Q5RC34_ML12A_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3SFU6_G3SFU6_GORGO_9595 and tr_A0A2I3RIH5_A0A2I3RIH5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SFU6_G3SFU6_GORGO_9595 and sp_P19105_ML12A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SFU6_G3SFU6_GORGO_9595 and tr_A0A2R9BQ50_A0A2R9BQ50_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1MWF2_G1MWF2_MELGA_9103 and tr_A0A2I0M1S6_A0A2I0M1S6_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1MWF2_G1MWF2_MELGA_9103 and tr_A0A1V4K2S7_A0A1V4K2S7_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1N0W1_G1N0W1_MELGA_9103 and tr_A0A091FCH3_A0A091FCH3_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1N0W1_G1N0W1_MELGA_9103 and tr_A0A091JLV5_A0A091JLV5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1N0W1_G1N0W1_MELGA_9103 and tr_A0A091ULJ1_A0A091ULJ1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1N0W1_G1N0W1_MELGA_9103 and tr_A0A099Z2B0_A0A099Z2B0_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1T7S0_G1T7S0_RABIT_9986 and tr_A0A286X9Z5_A0A286X9Z5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_W5PL19_W5PL19_SHEEP_9940 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_D2HXK6_D2HXK6_AILME_9646 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and sp_A4IF97_ML12B_BOVIN_9913 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A2U4A5S4_A0A2U4A5S4_TURTR_9739 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A2U3WT26_A0A2U3WT26_ODORO_9708 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A2U3X8L6_A0A2U3X8L6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A2Y9IS08_A0A2Y9IS08_ENHLU_391180 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A2Y9LIL4_A0A2Y9LIL4_DELLE_9749 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A2Y9FMC0_A0A2Y9FMC0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A384C0Y7_A0A384C0Y7_URSMA_29073 are exactly identical! WARNING: Sequences tr_L7N0I1_L7N0I1_CANLF_9615 and tr_A0A384AW76_A0A384AW76_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3TUX9_A0A2I3TUX9_PANTR_9598 and tr_A0A2R9BW05_A0A2R9BW05_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7CQW8_K7CQW8_PANTR_9598 and tr_A0A2R8ZXU8_A0A2R8ZXU8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7E1M0_F7E1M0_ORNAN_9258 and tr_F7BCR7_F7BCR7_MONDO_13616 are exactly identical! WARNING: Sequences tr_F7E1M0_F7E1M0_ORNAN_9258 and tr_G3W3S7_G3W3S7_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7E1M0_F7E1M0_ORNAN_9258 and tr_A0A1S2ZFB3_A0A1S2ZFB3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_W5P7V0_W5P7V0_SHEEP_9940 and tr_D2HQP9_D2HQP9_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A3B5R3A9_A0A3B5R3A9_XIPMA_8083 and tr_A0A087XP65_A0A087XP65_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZIS9_M3ZIS9_XIPMA_8083 and tr_A0A087Y7V1_A0A087Y7V1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AVV0_M4AVV0_XIPMA_8083 and tr_A0A087XC05_A0A087XC05_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AU38_A0A088AU38_APIME_7460 and tr_A0A2A3EFZ7_A0A2A3EFZ7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A3B5K1J0_A0A3B5K1J0_TAKRU_31033 and tr_H3DMZ5_H3DMZ5_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5K1J0_A0A3B5K1J0_TAKRU_31033 and tr_B5X1K8_B5X1K8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B5K1J0_A0A3B5K1J0_TAKRU_31033 and tr_A0A060XAU1_A0A060XAU1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A0J9Y1P5_A0A0J9Y1P5_BRUMA_6279 and tr_A0A0R3QJQ5_A0A0R3QJQ5_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1D5QZ41_A0A1D5QZ41_MACMU_9544 and tr_A0A0D9RSS6_A0A0D9RSS6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5RDY5_A0A1D5RDY5_MACMU_9544 and tr_A0A2K6DLI7_A0A2K6DLI7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7AEV1_F7AEV1_MACMU_9544 and tr_A0A2K6DJX5_A0A2K6DJX5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7EI96_F7EI96_MACMU_9544 and tr_A0A2K5NZP6_A0A2K5NZP6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7EI96_F7EI96_MACMU_9544 and tr_A0A2K6DGS0_A0A2K6DGS0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FK20_F7FK20_MACMU_9544 and tr_A0A2K5XCN6_A0A2K5XCN6_MANLE_9568 are exactly identical! WARNING: Sequences tr_E5SAQ7_E5SAQ7_TRISP_6334 and tr_A0A0V0S4Z5_A0A0V0S4Z5_9BILA_6336 are exactly identical! WARNING: Sequences tr_K7GEW2_K7GEW2_PELSI_13735 and tr_A0A151P011_A0A151P011_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7GEW2_K7GEW2_PELSI_13735 and tr_A0A1U7S5K7_A0A1U7S5K7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0Z1R5_H0Z1R5_TAEGU_59729 and tr_A0A093QBN0_A0A093QBN0_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z7T9_H0Z7T9_TAEGU_59729 and tr_A0A093Q3T6_A0A093Q3T6_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z7T9_H0Z7T9_TAEGU_59729 and tr_A0A087RAZ9_A0A087RAZ9_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0Z7T9_H0Z7T9_TAEGU_59729 and tr_A0A0A0A7K2_A0A0A0A7K2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E3LTC7_E3LTC7_CAERE_31234 and tr_A0A261BZW9_A0A261BZW9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8X9U2_A8X9U2_CAEBR_6238 and tr_A0A1I7UHS4_A0A1I7UHS4_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A8X9U2_A8X9U2_CAEBR_6238 and tr_A0A2G5UGK7_A0A2G5UGK7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G2J6D1_G2J6D1_CAEBR_6238 and tr_A0A2G5SMI5_A0A2G5SMI5_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B3SB79_B3SB79_TRIAD_10228 and tr_A0A369SF76_A0A369SF76_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7P2A0_G7P2A0_MACFA_9541 and tr_A0A2K6BE68_A0A2K6BE68_MACNE_9545 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A091FJP3_A0A091FJP3_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A091J1Z5_A0A091J1Z5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A093QDV8_A0A093QDV8_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A087RBG8_A0A087RBG8_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A091VUJ8_A0A091VUJ8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A091GHE5_A0A091GHE5_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A0A0A5C0_A0A0A0A5C0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A2I0MWL9_A0A2I0MWL9_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A1V4KG10_A0A1V4KG10_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A218UUL9_A0A218UUL9_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JUX6_U3JUX6_FICAL_59894 and tr_A0A226NG26_A0A226NG26_CALSU_9009 are exactly identical! WARNING: Sequences tr_U3K318_U3K318_FICAL_59894 and tr_A0A2I0M8A0_A0A2I0M8A0_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3K318_U3K318_FICAL_59894 and tr_A0A1V4JTH2_A0A1V4JTH2_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3K318_U3K318_FICAL_59894 and tr_A0A218V5B4_A0A218V5B4_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A3B1JX63_A0A3B1JX63_ASTMX_7994 and tr_E3TFV2_E3TFV2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A044TN04_A0A044TN04_ONCVO_6282 and tr_A0A182E8X0_A0A182E8X0_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044V351_A0A044V351_ONCVO_6282 and tr_A0A182E8W3_A0A182E8W3_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A016SD49_A0A016SD49_9BILA_53326 and tr_A0A016SDZ1_A0A016SDZ1_9BILA_53326 are exactly identical! WARNING: Sequences tr_A0A096MXK8_A0A096MXK8_PAPAN_9555 and tr_A0A2K5M2M6_A0A2K5M2M6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N1Q1_A0A096N1Q1_PAPAN_9555 and tr_A0A2K5NX73_A0A2K5NX73_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N1Q1_A0A096N1Q1_PAPAN_9555 and tr_A0A2K5YHF0_A0A2K5YHF0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0K0FHM6_A0A0K0FHM6_STRVS_75913 and tr_A0A0N5C2H9_A0A0N5C2H9_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0A1MZ24_A0A0A1MZ24_9FUNG_58291 and tr_A0A2G4SNT8_A0A2G4SNT8_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1MZ24_A0A0A1MZ24_9FUNG_58291 and tr_A0A367K4K1_A0A367K4K1_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0R3WLV8_A0A0R3WLV8_HYDTA_6205 and tr_A0A0R3W9V3_A0A0R3W9V3_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A151NEK4_A0A151NEK4_ALLMI_8496 and tr_A0A1U7RKG0_A0A1U7RKG0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A183I091_A0A183I091_9BILA_387005 and tr_A0A1I7VT85_A0A1I7VT85_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A099Z852_A0A099Z852_TINGU_94827 and tr_A0A091FZJ8_A0A091FZJ8_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0A0AIS0_A0A0A0AIS0_CHAVO_50402 and tr_A0A093G1X1_A0A093G1X1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0A0AIS0_A0A0A0AIS0_CHAVO_50402 and tr_A0A091IQB1_A0A091IQB1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0V0RZW0_A0A0V0RZW0_9BILA_6336 and tr_A0A0V0UZ56_A0A0V0UZ56_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RZW0_A0A0V0RZW0_9BILA_6336 and tr_A0A0V1KR77_A0A0V1KR77_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RZW0_A0A0V0RZW0_9BILA_6336 and tr_A0A0V0ZKS5_A0A0V0ZKS5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RZW0_A0A0V0RZW0_9BILA_6336 and tr_A0A0V1P385_A0A0V1P385_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RZW0_A0A0V0RZW0_9BILA_6336 and tr_A0A0V0TED3_A0A0V0TED3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CMM7_A0A0V1CMM7_TRIBR_45882 and tr_A0A0V0UV84_A0A0V0UV84_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CMM7_A0A0V1CMM7_TRIBR_45882 and tr_A0A0V1KRW0_A0A0V1KRW0_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CMM7_A0A0V1CMM7_TRIBR_45882 and tr_A0A0V0ZQN8_A0A0V0ZQN8_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CMM7_A0A0V1CMM7_TRIBR_45882 and tr_A0A0V0TP58_A0A0V0TP58_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CZW7_A0A0V1CZW7_TRIBR_45882 and tr_A0A0V0WC70_A0A0V0WC70_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V0X7S7_A0A0V0X7S7_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V1LFB2_A0A0V1LFB2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V1AFH0_A0A0V1AFH0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V1EY72_A0A0V1EY72_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V1MAW3_A0A0V1MAW3_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V1NLZ0_A0A0V1NLZ0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V1HZZ1_A0A0V1HZZ1_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1D119_A0A0V1D119_TRIBR_45882 and tr_A0A0V0TA34_A0A0V0TA34_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MLR5_A0A0V1MLR5_9BILA_268474 and tr_A0A0V1I7S2_A0A0V1I7S2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3H2I9_A0A1S3H2I9_LINUN_7574 and tr_A0A1S3H4F5_A0A1S3H4F5_LINUN_7574 are exactly identical! WARNING: Sequences tr_B5DGS9_B5DGS9_SALSA_8030 and tr_A0A060YC94_A0A060YC94_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5XE45_B5XE45_SALSA_8030 and tr_A0A060WJG3_A0A060WJG3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226N988_A0A226N988_CALSU_9009 and tr_A0A226PXS9_A0A226PXS9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NBX0_A0A226NBX0_CALSU_9009 and tr_A0A226PH50_A0A226PH50_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2K7D8_A0A2A2K7D8_9BILA_2018661 and tr_A0A2A2KP59_A0A2A2KP59_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2U3V603_A0A2U3V603_TURTR_9739 and tr_A0A2Y9Q8J9_A0A2Y9Q8J9_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 276 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916.raxml.reduced.phy Alignment comprises 1 partitions and 166 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 166 Gaps: 3.15 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/3_mltree/P10916.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 42 / 3360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -41155.732355 [00:00:00 -41155.732355] Initial branch length optimization [00:00:01 -39728.375267] Model parameter optimization (eps = 0.100000) [00:00:27] Tree #1, final logLikelihood: -39566.460566 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.220958,0.697819) (0.180362,0.557099) (0.349351,0.730257) (0.249329,1.966140) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10916/4_raxmlng_ancestral/P10916.raxml.log Analysis started: 02-Jun-2021 18:20:53 / finished: 02-Jun-2021 18:21:22 Elapsed time: 29.019 seconds Consumed energy: 1.222 Wh