RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 30-Jun-2021 17:07:45 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/2_msa/P10826_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/2_msa/P10826_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 241 sites

WARNING: Sequences tr_E9HV90_E9HV90_DAPPU_6669 and tr_A1XQQ1_A1XQQ1_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_A0A1D5P5J4_A0A1D5P5J4_CHICK_9031 and sp_Q90966_RARA_CHICK_9031 are exactly identical!
WARNING: Sequences tr_A0A1D5P5J4_A0A1D5P5J4_CHICK_9031 and tr_H3ABJ0_H3ABJ0_LATCH_7897 are exactly identical!
WARNING: Sequences tr_A0A1D5P5J4_A0A1D5P5J4_CHICK_9031 and tr_U3JC97_U3JC97_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5PVE2_A0A1D5PVE2_CHICK_9031 and tr_A0A226N1M4_A0A226N1M4_CALSU_9009 are exactly identical!
WARNING: Sequences sp_P22448_RARB_CHICK_9031 and tr_G3UUU2_G3UUU2_MELGA_9103 are exactly identical!
WARNING: Sequences sp_P22448_RARB_CHICK_9031 and tr_H0YYW9_H0YYW9_TAEGU_59729 are exactly identical!
WARNING: Sequences sp_P22448_RARB_CHICK_9031 and tr_U3K3J3_U3K3J3_FICAL_59894 are exactly identical!
WARNING: Sequences sp_P22448_RARB_CHICK_9031 and tr_U3IFR1_U3IFR1_ANAPL_8839 are exactly identical!
WARNING: Sequences sp_P22448_RARB_CHICK_9031 and tr_A0A218VEB2_A0A218VEB2_9PASE_299123 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_G3UR60_G3UR60_MELGA_9103 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_U3K3J5_U3K3J5_FICAL_59894 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_U3IEP0_U3IEP0_ANAPL_8839 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A151MQW0_A0A151MQW0_ALLMI_8496 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A091EMJ6_A0A091EMJ6_CORBR_85066 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A091JW13_A0A091JW13_EGRGA_188379 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A093PVM7_A0A093PVM7_9PASS_328815 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A091V746_A0A091V746_NIPNI_128390 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A091WG07_A0A091WG07_OPIHO_30419 are exactly identical!
WARNING: Sequences sp_P68306_THB_CHICK_9031 and tr_A0A218VE64_A0A218VE64_9PASE_299123 are exactly identical!
WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_G1NE58_G1NE58_MELGA_9103 are exactly identical!
WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_A0A226MEB0_A0A226MEB0_CALSU_9009 are exactly identical!
WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_A0A226PRB5_A0A226PRB5_COLVI_9014 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_M3Y411_M3Y411_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_F1PN60_F1PN60_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2I3T1N3_A0A2I3T1N3_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_I3N6K5_I3N6K5_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_H0VRX3_H0VRX3_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and sp_P13631_RARG_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_F6RB79_F6RB79_MACMU_9544 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2R8MMD9_A0A2R8MMD9_CALJA_9483 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A286ZM53_A0A286ZM53_PIG_9823 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_G7PHU3_G7PHU3_MACFA_9541 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_Q08DD4_Q08DD4_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_M3W4V4_M3W4V4_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2I3MWU2_A0A2I3MWU2_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A0D9QZP7_A0A0D9QZP7_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A1U7UD93_A0A1U7UD93_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2K5N2P2_A0A2K5N2P2_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2K6BUA5_A0A2K6BUA5_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2U3WCR8_A0A2U3WCR8_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2U3YD47_A0A2U3YD47_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A2Y9MZ66_A0A2Y9MZ66_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A384D720_A0A384D720_URSMA_29073 are exactly identical!
WARNING: Sequences sp_P18911_RARG_MOUSE_10090 and tr_A0A383ZWI9_A0A383ZWI9_BALAS_310752 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_M3YL24_M3YL24_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_G1QU20_G1QU20_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_G3S8K4_G3S8K4_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_H2PBB6_H2PBB6_PONAB_9601 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_G1SDW7_G1SDW7_RABIT_9986 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_E2R2A6_E2R2A6_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2I3T0W6_A0A2I3T0W6_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_F6YXU9_F6YXU9_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_D3ZFD9_D3ZFD9_RAT_10116 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_I3MAT4_I3MAT4_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and sp_P10826_RARB_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A1D5QJY1_A0A1D5QJY1_MACMU_9544 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_G1L1L8_G1L1L8_AILME_9646 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_M3WD77_M3WD77_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2I3MGX5_A0A2I3MGX5_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A1S2ZCB1_A0A1S2ZCB1_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A1U7TWI3_A0A1U7TWI3_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2K5NBP9_A0A2K5NBP9_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2K6DR22_A0A2K6DR22_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2K5Z0E7_A0A2K5Z0E7_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2R9BQB5_A0A2R9BQB5_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2U3ZX51_A0A2U3ZX51_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P22605_RARB_MOUSE_10090 and tr_A0A2Y9KCT9_A0A2Y9KCT9_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_G3IDY0_G3IDY0_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_F7E228_F7E228_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and sp_Q05343_RXRA_RAT_10116 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A337SPZ3_A0A337SPZ3_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A1S2ZM55_A0A1S2ZM55_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A1U7TEY7_A0A1U7TEY7_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A1U7RBT2_A0A1U7RBT2_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A2U3ZRS6_A0A2U3ZRS6_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A2U3YXK0_A0A2U3YXK0_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A2Y9NM79_A0A2Y9NM79_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P28700_RXRA_MOUSE_10090 and tr_A0A2Y9EZW5_A0A2Y9EZW5_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_G3S7Z4_G3S7Z4_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and sp_Q5REL6_RXRG_PONAB_9601 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_G1SP29_G1SP29_RABIT_9986 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A2I3SXI5_A0A2I3SXI5_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_W5PP44_W5PP44_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A286XQW1_A0A286XQW1_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and sp_P48443_RXRG_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_G5AQ29_G5AQ29_HETGA_10181 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and sp_Q0GFF6_RXRG_PIG_9823 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and sp_Q0VC20_RXRG_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A096MW06_A0A096MW06_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A0D9REB7_A0A0D9REB7_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A1U7UAI0_A0A1U7UAI0_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A1U7QFZ2_A0A1U7QFZ2_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A2K5XT39_A0A2K5XT39_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A2R9AQF8_A0A2R9AQF8_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A2Y9E2K7_A0A2Y9E2K7_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A2Y9MPA9_A0A2Y9MPA9_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A2Y9FR90_A0A2Y9FR90_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_P28705_RXRG_MOUSE_10090 and tr_A0A384AUR1_A0A384AUR1_BALAS_310752 are exactly identical!
WARNING: Sequences sp_P37242_THB_MOUSE_10090 and sp_P18113_THB_RAT_10116 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_M3YU02_M3YU02_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_G3I5M4_G3I5M4_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_G1SXS8_G1SXS8_RABIT_9986 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_E2QZW9_E2QZW9_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_F6ZL91_F6ZL91_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_W5PTM2_W5PTM2_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and sp_P63059_THA_RAT_10116 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_A0A287CW18_A0A287CW18_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_A0A286XXN5_A0A286XXN5_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_G3TVM8_G3TVM8_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_A0A2R8N2Q1_A0A2R8N2Q1_CALJA_9483 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and sp_O97716_THA_PIG_9823 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_G1LMA6_G1LMA6_AILME_9646 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_Q1RMT4_Q1RMT4_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P63058_THA_MOUSE_10090 and tr_M3WLR2_M3WLR2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_W5JPE7_W5JPE7_ANODA_43151 and tr_Q7Q4C6_Q7Q4C6_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_G1QML8_G1QML8_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_H2NU79_H2NU79_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_G1TI43_G1TI43_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_E2R2V0_E2R2V0_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_W5PXH0_W5PXH0_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_I3M4V2_I3M4V2_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and sp_P10276_RARA_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_I0FG12_I0FG12_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_F1RXC9_F1RXC9_PIG_9823 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_G1LMX4_G1LMX4_AILME_9646 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_F1MWQ3_F1MWQ3_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_L5JQ51_L5JQ51_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_M3WWH2_M3WWH2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2I3N6C1_A0A2I3N6C1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A0D9S321_A0A0D9S321_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A1S3A8K3_A0A1S3A8K3_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A1U7UH95_A0A1U7UH95_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2K5P3R2_A0A2K5P3R2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2K6BFY8_A0A2K6BFY8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2K6A937_A0A2K6A937_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2U3VJK3_A0A2U3VJK3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2Y9JV20_A0A2Y9JV20_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2Y9T8Y0_A0A2Y9T8Y0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A383ZRW1_A0A383ZRW1_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_G1PPF3_G1PPF3_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_G1TH32_G1TH32_RABIT_9986 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and sp_Q5TJF7_RXRB_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_F6VI13_F6VI13_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_I3N272_I3N272_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and sp_P28702_RXRB_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A5D9P3_A5D9P3_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A6H7I6_A6H7I6_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_L5L040_L5L040_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A0A096NHF9_A0A096NHF9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A0A0D9RAX9_A0A0D9RAX9_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A0A2Y9P552_A0A2Y9P552_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A0A2Y9ETG3_A0A2Y9ETG3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A0A384CA25_A0A384CA25_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3XT49_M3XT49_MUSPF_9669 and tr_A0A384AIB7_A0A384AIB7_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3XXG4_M3XXG4_MUSPF_9669 and tr_A0A2Y9JUH5_A0A2Y9JUH5_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2I3FV35_A0A2I3FV35_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_G3QWF5_G3QWF5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_F1PPW9_F1PPW9_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2I3SVN9_A0A2I3SVN9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_F7E358_F7E358_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_I3M5M5_I3M5M5_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_H0WJU5_H0WJU5_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and sp_P10828_THB_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_F7G9B9_F7G9B9_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_G5BFQ2_G5BFQ2_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_G3TC97_G3TC97_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_F6S9P7_F6S9P7_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_G1MI06_G1MI06_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_G7NY92_G7NY92_MACFA_9541 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_L5L2J0_L5L2J0_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2I2UCE6_A0A2I2UCE6_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2I3NB61_A0A2I3NB61_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A091D5Z6_A0A091D5Z6_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A0D9RBL0_A0A0D9RBL0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A1S2ZCE3_A0A1S2ZCE3_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A1S3ENN7_A0A1S3ENN7_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A1U7SJ14_A0A1U7SJ14_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2K5MKR8_A0A2K5MKR8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2K6E1L8_A0A2K6E1L8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2K5YHL0_A0A2K5YHL0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2R9A5N1_A0A2R9A5N1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2U3ZXD2_A0A2U3ZXD2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2Y9R3L0_A0A2Y9R3L0_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A2Y9KN61_A0A2Y9KN61_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YL33_M3YL33_MUSPF_9669 and tr_A0A384DSM7_A0A384DSM7_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3YL73_M3YL73_MUSPF_9669 and tr_A0A1S3G7U8_A0A1S3G7U8_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1RX84_G1RX84_NOMLE_61853 and tr_A0A2U3UZW3_A0A2U3UZW3_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1S7S8_G1S7S8_NOMLE_61853 and tr_A0A2J8SXM1_A0A2J8SXM1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S7S8_G1S7S8_NOMLE_61853 and tr_A0A096MPB8_A0A096MPB8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3H1F7_G3H1F7_CRIGR_10029 and tr_A0A3Q0D8S7_A0A3Q0D8S7_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G3HV53_G3HV53_CRIGR_10029 and tr_D3ZWV0_D3ZWV0_RAT_10116 are exactly identical!
WARNING: Sequences tr_G3I5N2_G3I5N2_CRIGR_10029 and tr_A0A0G2JW78_A0A0G2JW78_RAT_10116 are exactly identical!
WARNING: Sequences tr_G3I5N2_G3I5N2_CRIGR_10029 and tr_A0A1U8CBR3_A0A1U8CBR3_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and tr_H2QCV7_H2QCV7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and sp_P10827_THA_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and tr_A0A2I3LZ58_A0A2I3LZ58_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and tr_A0A0D9S339_A0A0D9S339_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and tr_A0A2K5KQN8_A0A2K5KQN8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and tr_A0A2K5Z439_A0A2K5Z439_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I2ZI23_A0A2I2ZI23_GORGO_9595 and tr_A0A2R9BJJ5_A0A2R9BJJ5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QKS9_G3QKS9_GORGO_9595 and tr_H2R9N8_H2R9N8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QKS9_G3QKS9_GORGO_9595 and tr_A0A2R9CKX4_A0A2R9CKX4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2J8WEY5_A0A2J8WEY5_PONAB_9601 and tr_F6T760_F6T760_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2J8WEY5_A0A2J8WEY5_PONAB_9601 and tr_A0A0D9R069_A0A0D9R069_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_E2RD69_E2RD69_CANLF_9615 and tr_G1LJ94_G1LJ94_AILME_9646 are exactly identical!
WARNING: Sequences tr_K9J6P0_K9J6P0_CANLF_9615 and sp_P51666_NR4A1_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3SPS8_A0A2I3SPS8_PANTR_9598 and sp_Q13133_NR1H3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3SPS8_A0A2I3SPS8_PANTR_9598 and tr_A0A2R9BRK5_A0A2R9BRK5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2R395_H2R395_PANTR_9598 and sp_P19793_RXRA_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2R395_H2R395_PANTR_9598 and tr_A0A2I3M8T5_A0A2I3M8T5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2R395_H2R395_PANTR_9598 and tr_A0A2K5M5N8_A0A2K5M5N8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H2R395_H2R395_PANTR_9598 and tr_A0A2K6BEY2_A0A2K6BEY2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2R395_H2R395_PANTR_9598 and tr_A0A2K5Y2K6_A0A2K5Y2K6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H2R395_H2R395_PANTR_9598 and tr_A0A2R9CL53_A0A2R9CL53_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_F7AZG5_F7AZG5_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_K7FZD0_K7FZD0_PELSI_13735 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_G3WSM6_G3WSM6_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_U3J0G8_U3J0G8_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A151MFT6_A0A151MFT6_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A0Q3RD29_A0A0Q3RD29_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A091JE53_A0A091JE53_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A091UQP9_A0A091UQP9_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A087R4Q8_A0A087R4Q8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A093H9R3_A0A093H9R3_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A091V921_A0A091V921_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A091H8E0_A0A091H8E0_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A2I0M3Q9_A0A2I0M3Q9_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A091I5Q5_A0A091I5Q5_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A1U7SDP6_A0A1U7SDP6_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A1V4J7B0_A0A1V4J7B0_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A226NNV0_A0A226NNV0_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F6ZBP3_F6ZBP3_ORNAN_9258 and tr_A0A226P8I1_A0A226P8I1_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F6Y1I2_F6Y1I2_MONDO_13616 and tr_G3VV01_G3VV01_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F7G6F3_F7G6F3_MONDO_13616 and tr_G3VNI2_G3VNI2_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_H0WSU1_H0WSU1_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_L5JS23_L5JS23_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A1S3A8J3_A0A1S3A8J3_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A1S3GX10_A0A1S3GX10_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A1U8CBE0_A0A1U8CBE0_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A2U3VJY3_A0A2U3VJY3_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A2U3YR99_A0A2U3YR99_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A2Y9FXA2_A0A2Y9FXA2_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A2Y9JVU8_A0A2Y9JVU8_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A2Y9LYM2_A0A2Y9LYM2_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A2Y9F266_A0A2Y9F266_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A384BYE0_A0A384BYE0_URSMA_29073 are exactly identical!
WARNING: Sequences sp_Q28570_THA_SHEEP_9940 and tr_A0A383ZR94_A0A383ZR94_BALAS_310752 are exactly identical!
WARNING: Sequences tr_W5P2V7_W5P2V7_SHEEP_9940 and tr_G3X7C1_G3X7C1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5P2V7_W5P2V7_SHEEP_9940 and tr_A0A2U4CFJ8_A0A2U4CFJ8_TURTR_9739 are exactly identical!
WARNING: Sequences tr_W5P2V7_W5P2V7_SHEEP_9940 and tr_A0A2Y9LL47_A0A2Y9LL47_DELLE_9749 are exactly identical!
WARNING: Sequences tr_W5P2V7_W5P2V7_SHEEP_9940 and tr_A0A2Y9RWN4_A0A2Y9RWN4_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_W5P2V7_W5P2V7_SHEEP_9940 and tr_A0A383ZFJ3_A0A383ZFJ3_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A3B5QAK7_A0A3B5QAK7_XIPMA_8083 and tr_A0A087YKJ2_A0A087YKJ2_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5QM78_A0A3B5QM78_XIPMA_8083 and tr_A0A096MHQ7_A0A096MHQ7_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5QQU0_A0A3B5QQU0_XIPMA_8083 and tr_A0A087X952_A0A087X952_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZHC5_M3ZHC5_XIPMA_8083 and tr_I3KSM9_I3KSM9_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M3ZHC5_M3ZHC5_XIPMA_8083 and tr_H2VE47_H2VE47_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_M3ZHC5_M3ZHC5_XIPMA_8083 and tr_A0A096M8G6_A0A096M8G6_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4ARK2_M4ARK2_XIPMA_8083 and tr_A0A087XLH3_A0A087XLH3_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4AU20_M4AU20_XIPMA_8083 and tr_A0A087YIL4_A0A087YIL4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A158NJW5_A0A158NJW5_ATTCE_12957 and tr_F4WIM8_F4WIM8_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NJW5_A0A158NJW5_ATTCE_12957 and tr_A0A195BIX3_A0A195BIX3_9HYME_520822 are exactly identical!
WARNING: Sequences tr_I3K5Q0_I3K5Q0_ORENI_8128 and tr_A0A087Y0Q4_A0A087Y0Q4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A287D2S3_A0A287D2S3_ICTTR_43179 and tr_G3T3E9_G3T3E9_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A287D2S3_A0A287D2S3_ICTTR_43179 and tr_Q4TU03_Q4TU03_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A287D2S3_A0A287D2S3_ICTTR_43179 and tr_M3VYP1_M3VYP1_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A287D2S3_A0A287D2S3_ICTTR_43179 and tr_A0A2U3VVV2_A0A2U3VVV2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A287D2S3_A0A287D2S3_ICTTR_43179 and tr_A0A2U3XFI0_A0A2U3XFI0_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_H0UTB8_H0UTB8_CAVPO_10141 and tr_K9J6K3_K9J6K3_PIG_9823 are exactly identical!
WARNING: Sequences tr_H0VTA6_H0VTA6_CAVPO_10141 and tr_F6RB49_F6RB49_CALJA_9483 are exactly identical!
WARNING: Sequences tr_H0VTA6_H0VTA6_CAVPO_10141 and tr_L5L3F0_L5L3F0_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_H0VTA6_H0VTA6_CAVPO_10141 and tr_A0A091D601_A0A091D601_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_H0VTA6_H0VTA6_CAVPO_10141 and tr_A0A3Q0D8A4_A0A3Q0D8A4_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P22736_NR4A1_HUMAN_9606 and tr_A0A2R9BBQ9_A0A2R9BBQ9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F7HDB8_F7HDB8_MACMU_9544 and tr_G7NU27_G7NU27_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7HDB8_F7HDB8_MACMU_9544 and tr_A0A2K6CSH7_A0A2K6CSH7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G5BIG9_G5BIG9_HETGA_10181 and tr_A0A091CTK1_A0A091CTK1_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V0RUN6_A0A0V0RUN6_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V0X104_A0A0V0X104_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V0VYE3_A0A0V0VYE3_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V1LAZ7_A0A0V1LAZ7_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V1A7P5_A0A0V1A7P5_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V0YLL7_A0A0V0YLL7_TRIPS_6337 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V1N939_A0A0V1N939_9BILA_268474 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V1PEM8_A0A0V1PEM8_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5SAU0_E5SAU0_TRISP_6334 and tr_A0A0V0U7W0_A0A0V0U7W0_9BILA_144512 are exactly identical!
WARNING: Sequences tr_G3X8H8_G3X8H8_LOXAF_9785 and tr_A0A2Y9DNL8_A0A2Y9DNL8_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_H0Z605_H0Z605_TAEGU_59729 and tr_U3JG23_U3JG23_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0Z605_H0Z605_TAEGU_59729 and tr_A0A091FAL0_A0A091FAL0_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0Z605_H0Z605_TAEGU_59729 and tr_A0A093Q422_A0A093Q422_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0Z605_H0Z605_TAEGU_59729 and tr_A0A218V5Z7_A0A218V5Z7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_U3JUY4_U3JUY4_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A091F058_A0A091F058_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A091KHJ0_A0A091KHJ0_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A091VV96_A0A091VV96_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A087QYK9_A0A087QYK9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A091GNL5_A0A091GNL5_9AVES_55661 are exactly identical!
WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A218V9F4_A0A218V9F4_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_U3JZQ7_U3JZQ7_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_U3IAZ3_U3IAZ3_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A091EEP3_A0A091EEP3_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A091JNJ5_A0A091JNJ5_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A087QQG6_A0A087QQG6_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A091GMR8_A0A091GMR8_9AVES_55661 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A0A0B085_A0A0A0B085_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A091I2E2_A0A091I2E2_CALAN_9244 are exactly identical!
WARNING: Sequences tr_H1A3X8_H1A3X8_TAEGU_59729 and tr_A0A218V4X0_A0A218V4X0_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G1LL75_G1LL75_AILME_9646 and tr_A0A384CWN9_A0A384CWN9_URSMA_29073 are exactly identical!
WARNING: Sequences tr_U3JCD8_U3JCD8_FICAL_59894 and tr_A0A218UN29_A0A218UN29_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A151LYJ6_A0A151LYJ6_ALLMI_8496 and tr_A0A1U7S7Z8_A0A1U7S7Z8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MIK8_A0A151MIK8_ALLMI_8496 and tr_A0A3Q0FYR5_A0A3Q0FYR5_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MRA2_A0A151MRA2_ALLMI_8496 and tr_A0A1U7RNG1_A0A1U7RNG1_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MSG5_A0A151MSG5_ALLMI_8496 and tr_A0A3Q0HC80_A0A3Q0HC80_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151PCR3_A0A151PCR3_ALLMI_8496 and tr_A0A1U8DB42_A0A1U8DB42_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A091J542_A0A091J542_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A093PWL8_A0A093PWL8_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A091V740_A0A091V740_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A087RK02_A0A087RK02_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A093IA54_A0A093IA54_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A091WED5_A0A091WED5_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A099YYA9_A0A099YYA9_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A091FJQ0_A0A091FJQ0_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A0A0AD91_A0A0A0AD91_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A093GWB3_A0A093GWB3_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A091EIP2_A0A091EIP2_CORBR_85066 and tr_A0A091IMM0_A0A091IMM0_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A091J7E3_A0A091J7E3_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A093Q306_A0A093Q306_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A091V568_A0A091V568_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A087RK01_A0A087RK01_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A093HZ44_A0A093HZ44_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A091WGU7_A0A091WGU7_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A099YY43_A0A099YY43_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A091FP34_A0A091FP34_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A0A0A8T3_A0A0A0A8T3_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A093GLC4_A0A093GLC4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A091ENA7_A0A091ENA7_CORBR_85066 and tr_A0A091IJ14_A0A091IJ14_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A093PPX8_A0A093PPX8_9PASS_328815 and tr_A0A091VZH5_A0A091VZH5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A093PPX8_A0A093PPX8_9PASS_328815 and tr_A0A2I0MC98_A0A2I0MC98_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A093PPX8_A0A093PPX8_9PASS_328815 and tr_A0A093GN82_A0A093GN82_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A093PPX8_A0A093PPX8_9PASS_328815 and tr_A0A1V4JXI0_A0A1V4JXI0_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A087QJ49_A0A087QJ49_APTFO_9233 and tr_A0A091FNT7_A0A091FNT7_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A087RJZ9_A0A087RJZ9_APTFO_9233 and tr_A0A093GIW4_A0A093GIW4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A2I0MNE1_A0A2I0MNE1_COLLI_8932 and tr_A0A1V4KGB1_A0A1V4KGB1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A2I0MQP2_A0A2I0MQP2_COLLI_8932 and tr_A0A1V4KDS9_A0A1V4KDS9_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V1CSX1_A0A0V1CSX1_TRIBR_45882 and tr_A0A0V0VIS1_A0A0V0VIS1_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V1CSX1_A0A0V1CSX1_TRIBR_45882 and tr_A0A0V1PEM3_A0A0V1PEM3_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V1CSX1_A0A0V1CSX1_TRIBR_45882 and tr_A0A0V0U9D4_A0A0V0U9D4_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0V0WSV5_A0A0V0WSV5_9BILA_92179 and tr_A0A0V1L9E0_A0A0V1L9E0_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A1S3JVH9_A0A1S3JVH9_LINUN_7574 and tr_A0A1S3JVI3_A0A1S3JVI3_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3JVH9_A0A1S3JVH9_LINUN_7574 and tr_A0A1S3JVP8_A0A1S3JVP8_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3JVH9_A0A1S3JVH9_LINUN_7574 and tr_A0A1S3JWD1_A0A1S3JWD1_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3JVH9_A0A1S3JVH9_LINUN_7574 and tr_A0A1S3JWF8_A0A1S3JWF8_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S2WZ42_A0A1S2WZ42_SALSA_8030 and sp_Q9W785_THA_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3KT52_A0A1S3KT52_SALSA_8030 and tr_A0A1S3PRC4_A0A1S3PRC4_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3KT52_A0A1S3KT52_SALSA_8030 and tr_B8Y3M0_B8Y3M0_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3KT52_A0A1S3KT52_SALSA_8030 and tr_A0A060WYW4_A0A060WYW4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LB08_A0A1S3LB08_SALSA_8030 and tr_A0A060WLK9_A0A060WLK9_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LWH2_A0A1S3LWH2_SALSA_8030 and tr_A0A060YBA0_A0A060YBA0_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3M3S5_A0A1S3M3S5_SALSA_8030 and tr_Q90Y21_Q90Y21_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3M3S5_A0A1S3M3S5_SALSA_8030 and tr_Q90Y22_Q90Y22_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3PYL1_A0A1S3PYL1_SALSA_8030 and tr_A0A060WZU0_A0A060WZU0_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B3TDE9_B3TDE9_SALSA_8030 and tr_A0A060W4K2_A0A060W4K2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2I4BA78_A0A2I4BA78_9TELE_52670 and tr_A0A2I4C1P4_A0A2I4C1P4_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A2D0PY04_A0A2D0PY04_ICTPU_7998 and tr_A0A2D0PZA2_A0A2D0PZA2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0Q8R6_A0A2D0Q8R6_ICTPU_7998 and tr_A0A2D0QBB9_A0A2D0QBB9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S1W1_A0A2D0S1W1_ICTPU_7998 and tr_A0A2D0S1X8_A0A2D0S1X8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S1W1_A0A2D0S1W1_ICTPU_7998 and tr_A0A2D0S2S1_A0A2D0S2S1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S1W1_A0A2D0S1W1_ICTPU_7998 and tr_A0A2D0S3F2_A0A2D0S3F2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S2L5_A0A2D0S2L5_ICTPU_7998 and tr_A0A2D0S2N1_A0A2D0S2N1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S2L5_A0A2D0S2L5_ICTPU_7998 and tr_A0A2D0S2N7_A0A2D0S2N7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S2N9_A0A2D0S2N9_ICTPU_7998 and tr_A0A2D0S2R1_A0A2D0S2R1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S2N9_A0A2D0S2N9_ICTPU_7998 and tr_A0A2D0S3K9_A0A2D0S3K9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0F7_A0A2D0T0F7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0F9_A0A2D0T0F9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0G0_A0A2D0T0G0_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0G3_A0A2D0T0G3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0G4_A0A2D0T0G4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0U4_A0A2D0T0U4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T0V0_A0A2D0T0V0_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T1D2_A0A2D0T1D2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0F2_A0A2D0T0F2_ICTPU_7998 and tr_A0A2D0T1D8_A0A2D0T1D8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2K5NGE1_A0A2K5NGE1_CERAT_9531 and tr_A0A2K5YCG5_A0A2K5YCG5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U3V9Y2_A0A2U3V9Y2_TURTR_9739 and tr_A0A2U4CDM5_A0A2U4CDM5_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A2U3V9Y2_A0A2U3V9Y2_TURTR_9739 and tr_A0A2U4CDN8_A0A2U4CDN8_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A2U3V9Y2_A0A2U3V9Y2_TURTR_9739 and tr_A0A2U4CDP7_A0A2U4CDP7_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A2U4CFG9_A0A2U4CFG9_TURTR_9739 and tr_A0A2Y9LTK2_A0A2Y9LTK2_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4CFG9_A0A2U4CFG9_TURTR_9739 and tr_A0A2Y9RXB1_A0A2Y9RXB1_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NEY9_A0A2Y9NEY9_DELLE_9749 and tr_A0A383ZWZ0_A0A383ZWZ0_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 389

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.reduced.phy

Alignment comprises 1 partitions and 241 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 241 / 241
Gaps: 3.74 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 241 / 19280
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -384879.213518] Initial branch length optimization
[00:00:06 -292391.465967] Model parameter optimization (eps = 10.000000)
[00:01:15 -291740.191511] AUTODETECT spr round 1 (radius: 5)
[00:04:45 -145036.948662] AUTODETECT spr round 2 (radius: 10)
[00:08:09 -97191.625027] AUTODETECT spr round 3 (radius: 15)
[00:11:50 -74333.629541] AUTODETECT spr round 4 (radius: 20)
[00:15:43 -61461.691159] AUTODETECT spr round 5 (radius: 25)
[00:20:14 -52199.127861] SPR radius for FAST iterations: 25 (autodetect)
[00:20:14 -52199.127861] Model parameter optimization (eps = 3.000000)
[00:21:01 -52098.440098] FAST spr round 1 (radius: 25)
[00:24:19 -41782.722720] FAST spr round 2 (radius: 25)
[00:26:56 -40535.772998] FAST spr round 3 (radius: 25)
[00:29:14 -40074.531651] FAST spr round 4 (radius: 25)
[00:31:24 -39825.074552] FAST spr round 5 (radius: 25)
[00:33:31 -39816.552622] FAST spr round 6 (radius: 25)
[00:35:36 -39808.411960] FAST spr round 7 (radius: 25)
[00:37:35 -39808.411940] Model parameter optimization (eps = 1.000000)
[00:38:00 -39796.987152] SLOW spr round 1 (radius: 5)
[00:40:27 -39785.555877] SLOW spr round 2 (radius: 5)
[00:42:57 -39784.385861] SLOW spr round 3 (radius: 5)
[00:45:19 -39784.385648] SLOW spr round 4 (radius: 10)
[00:47:55 -39783.601198] SLOW spr round 5 (radius: 5)
[00:50:57 -39783.601172] SLOW spr round 6 (radius: 10)
[00:53:55 -39783.601161] SLOW spr round 7 (radius: 15)
[00:57:30 -39783.601150] SLOW spr round 8 (radius: 20)
[01:03:03 -39783.601139] SLOW spr round 9 (radius: 25)
[01:07:34] [worker #2] ML tree search #3, logLikelihood: -39628.723374
[01:10:58 -39781.410922] SLOW spr round 10 (radius: 5)
[01:14:23 -39739.038197] SLOW spr round 11 (radius: 5)
[01:17:20 -39654.666995] SLOW spr round 12 (radius: 5)
[01:20:05 -39647.385332] SLOW spr round 13 (radius: 5)
[01:22:37 -39645.958178] SLOW spr round 14 (radius: 5)
[01:25:01 -39645.957654] SLOW spr round 15 (radius: 10)
[01:26:47] [worker #1] ML tree search #2, logLikelihood: -39630.470467
[01:27:34 -39645.957632] SLOW spr round 16 (radius: 15)
[01:31:21 -39645.957618] SLOW spr round 17 (radius: 20)
[01:36:44 -39644.718811] SLOW spr round 18 (radius: 5)
[01:39:57 -39644.718798] SLOW spr round 19 (radius: 10)
[01:43:11 -39644.718786] SLOW spr round 20 (radius: 15)
[01:46:46 -39644.718773] SLOW spr round 21 (radius: 20)
[01:52:16 -39643.230699] SLOW spr round 22 (radius: 5)
[01:54:29] [worker #3] ML tree search #4, logLikelihood: -39641.730898
[01:55:30 -39643.230686] SLOW spr round 23 (radius: 10)
[01:58:42 -39643.230673] SLOW spr round 24 (radius: 15)
[02:02:16 -39643.230660] SLOW spr round 25 (radius: 20)
[02:07:44 -39643.230647] SLOW spr round 26 (radius: 25)
[02:09:47] [worker #2] ML tree search #8, logLikelihood: -39618.179260
[02:15:15 -39643.230633] Model parameter optimization (eps = 0.100000)

[02:15:29] [worker #0] ML tree search #1, logLikelihood: -39643.054692

[02:15:29 -378206.549180] Initial branch length optimization
[02:15:36 -287440.063401] Model parameter optimization (eps = 10.000000)
[02:16:36 -286775.208283] AUTODETECT spr round 1 (radius: 5)
[02:20:04 -145750.238004] AUTODETECT spr round 2 (radius: 10)
[02:23:41 -92091.261464] AUTODETECT spr round 3 (radius: 15)
[02:26:14] [worker #4] ML tree search #5, logLikelihood: -39614.413179
[02:27:25 -71750.862162] AUTODETECT spr round 4 (radius: 20)
[02:31:21 -60195.956514] AUTODETECT spr round 5 (radius: 25)
[02:35:43 -54269.278006] SPR radius for FAST iterations: 25 (autodetect)
[02:35:43 -54269.278006] Model parameter optimization (eps = 3.000000)
[02:36:22 -54154.236276] FAST spr round 1 (radius: 25)
[02:39:32 -44571.959570] FAST spr round 2 (radius: 25)
[02:42:05 -41170.593318] FAST spr round 3 (radius: 25)
[02:44:25 -39924.058634] FAST spr round 4 (radius: 25)
[02:46:40 -39672.334847] FAST spr round 5 (radius: 25)
[02:48:50 -39659.865252] FAST spr round 6 (radius: 25)
[02:50:59 -39655.755314] FAST spr round 7 (radius: 25)
[02:53:03 -39653.599672] FAST spr round 8 (radius: 25)
[02:55:04 -39653.227177] FAST spr round 9 (radius: 25)
[02:57:04 -39653.226867] Model parameter optimization (eps = 1.000000)
[02:57:24 -39643.811175] SLOW spr round 1 (radius: 5)
[02:59:50 -39638.679581] SLOW spr round 2 (radius: 5)
[03:02:19 -39627.973561] SLOW spr round 3 (radius: 5)
[03:04:42 -39627.266483] SLOW spr round 4 (radius: 5)
[03:07:02 -39627.266466] SLOW spr round 5 (radius: 10)
[03:09:37 -39624.587611] SLOW spr round 6 (radius: 5)
[03:12:37 -39624.587599] SLOW spr round 7 (radius: 10)
[03:13:20] [worker #1] ML tree search #7, logLikelihood: -39627.071012
[03:15:34 -39624.587382] SLOW spr round 8 (radius: 15)
[03:19:14 -39624.072367] SLOW spr round 9 (radius: 5)
[03:22:23 -39624.071928] SLOW spr round 10 (radius: 10)
[03:25:30 -39624.071904] SLOW spr round 11 (radius: 15)
[03:29:05 -39624.071881] SLOW spr round 12 (radius: 20)
[03:30:10] [worker #2] ML tree search #13, logLikelihood: -39610.643397
[03:34:36 -39624.071863] SLOW spr round 13 (radius: 25)
[03:39:56] [worker #3] ML tree search #9, logLikelihood: -45121.363038
[03:41:55 -39624.071848] Model parameter optimization (eps = 0.100000)

[03:42:05] [worker #0] ML tree search #6, logLikelihood: -39623.971110

[03:42:05 -382220.854048] Initial branch length optimization
[03:42:11 -292611.555370] Model parameter optimization (eps = 10.000000)
[03:43:08 -291994.034476] AUTODETECT spr round 1 (radius: 5)
[03:46:48 -145118.286387] AUTODETECT spr round 2 (radius: 10)
[03:50:19 -90380.926441] AUTODETECT spr round 3 (radius: 15)
[03:53:55 -64331.187743] AUTODETECT spr round 4 (radius: 20)
[03:57:45 -57392.917614] AUTODETECT spr round 5 (radius: 25)
[04:02:08 -50568.794090] SPR radius for FAST iterations: 25 (autodetect)
[04:02:08 -50568.794090] Model parameter optimization (eps = 3.000000)
[04:02:48 -50443.664817] FAST spr round 1 (radius: 25)
[04:06:05 -40908.968201] FAST spr round 2 (radius: 25)
[04:08:40 -39733.226828] FAST spr round 3 (radius: 25)
[04:09:22] [worker #4] ML tree search #10, logLikelihood: -39771.634484
[04:10:59 -39661.579895] FAST spr round 4 (radius: 25)
[04:13:09 -39648.790300] FAST spr round 5 (radius: 25)
[04:15:10 -39646.347550] FAST spr round 6 (radius: 25)
[04:17:07 -39646.347343] Model parameter optimization (eps = 1.000000)
[04:17:25 -39630.963995] SLOW spr round 1 (radius: 5)
[04:19:19] [worker #1] ML tree search #12, logLikelihood: -39618.516010
[04:19:49 -39623.637814] SLOW spr round 2 (radius: 5)
[04:22:18 -39622.296444] SLOW spr round 3 (radius: 5)
[04:24:45 -39622.295251] SLOW spr round 4 (radius: 10)
[04:27:26 -39621.555463] SLOW spr round 5 (radius: 5)
[04:30:32 -39621.408444] SLOW spr round 6 (radius: 5)
[04:33:17 -39621.408301] SLOW spr round 7 (radius: 10)
[04:36:04 -39621.408244] SLOW spr round 8 (radius: 15)
[04:39:50 -39621.408225] SLOW spr round 9 (radius: 20)
[04:45:45 -39621.164811] SLOW spr round 10 (radius: 5)
[04:49:07 -39621.164707] SLOW spr round 11 (radius: 10)
[04:52:22 -39614.732330] SLOW spr round 12 (radius: 5)
[04:55:17 -39614.732017] SLOW spr round 13 (radius: 10)
[04:58:09 -39614.732013] SLOW spr round 14 (radius: 15)
[05:01:50 -39614.732012] SLOW spr round 15 (radius: 20)
[05:07:42 -39614.732012] SLOW spr round 16 (radius: 25)
[05:15:18 -39614.478703] SLOW spr round 17 (radius: 5)
[05:17:07] [worker #3] ML tree search #14, logLikelihood: -39636.038489
[05:18:21] [worker #2] ML tree search #18, logLikelihood: -39638.961596
[05:18:22] [worker #4] ML tree search #15, logLikelihood: -39857.466573
[05:18:33 -39614.462075] SLOW spr round 18 (radius: 10)
[05:21:46 -39613.362277] SLOW spr round 19 (radius: 5)
[05:24:41 -39613.361868] SLOW spr round 20 (radius: 10)
[05:27:34 -39613.361724] SLOW spr round 21 (radius: 15)
[05:31:13 -39613.361671] SLOW spr round 22 (radius: 20)
[05:37:02 -39613.361652] SLOW spr round 23 (radius: 25)
[05:44:35 -39613.361582] Model parameter optimization (eps = 0.100000)

[05:44:43] [worker #0] ML tree search #11, logLikelihood: -39613.317910

[05:44:43 -379199.917124] Initial branch length optimization
[05:44:49 -290389.768585] Model parameter optimization (eps = 10.000000)
[05:45:47 -289669.175432] AUTODETECT spr round 1 (radius: 5)
[05:49:19 -147134.141382] AUTODETECT spr round 2 (radius: 10)
[05:53:03 -95397.099578] AUTODETECT spr round 3 (radius: 15)
[05:56:38 -70772.301357] AUTODETECT spr round 4 (radius: 20)
[06:00:34 -62940.074318] AUTODETECT spr round 5 (radius: 25)
[06:05:57 -51085.642417] SPR radius for FAST iterations: 25 (autodetect)
[06:05:57 -51085.642417] Model parameter optimization (eps = 3.000000)
[06:06:23 -50989.602675] FAST spr round 1 (radius: 25)
[06:09:36 -41545.612975] FAST spr round 2 (radius: 25)
[06:12:08 -39999.461429] FAST spr round 3 (radius: 25)
[06:14:27 -39695.177494] FAST spr round 4 (radius: 25)
[06:16:39 -39666.366965] FAST spr round 5 (radius: 25)
[06:18:46 -39666.365907] Model parameter optimization (eps = 1.000000)
[06:19:09 -39646.532164] SLOW spr round 1 (radius: 5)
[06:19:27] [worker #1] ML tree search #17, logLikelihood: -39600.891500
[06:21:36 -39636.170514] SLOW spr round 2 (radius: 5)
[06:24:07 -39634.983087] SLOW spr round 3 (radius: 5)
[06:26:37 -39634.981600] SLOW spr round 4 (radius: 10)
[06:29:18 -39633.455977] SLOW spr round 5 (radius: 5)
[06:32:24 -39633.455236] SLOW spr round 6 (radius: 10)
[06:35:22 -39633.455085] SLOW spr round 7 (radius: 15)
[06:36:13] [worker #3] ML tree search #19, logLikelihood: -39652.468906
[06:38:46 -39633.190866] SLOW spr round 8 (radius: 5)
[06:41:58 -39633.190708] SLOW spr round 9 (radius: 10)
[06:44:59 -39633.190678] SLOW spr round 10 (radius: 15)
[06:46:36] [worker #4] ML tree search #20, logLikelihood: -39617.939592
[06:48:19 -39633.190667] SLOW spr round 11 (radius: 20)
[06:53:00 -39632.686627] SLOW spr round 12 (radius: 5)
[06:56:12 -39632.686565] SLOW spr round 13 (radius: 10)
[06:59:17 -39630.261011] SLOW spr round 14 (radius: 5)
[07:02:12 -39630.260962] SLOW spr round 15 (radius: 10)
[07:05:01 -39630.260940] SLOW spr round 16 (radius: 15)
[07:08:24 -39628.484623] SLOW spr round 17 (radius: 5)
[07:11:33 -39628.484601] SLOW spr round 18 (radius: 10)
[07:14:34 -39628.484578] SLOW spr round 19 (radius: 15)
[07:17:53 -39628.484569] SLOW spr round 20 (radius: 20)
[07:22:35 -39627.429459] SLOW spr round 21 (radius: 5)
[07:25:48 -39627.429437] SLOW spr round 22 (radius: 10)
[07:28:55 -39627.429415] SLOW spr round 23 (radius: 15)
[07:32:16 -39627.429407] SLOW spr round 24 (radius: 20)
[07:36:53 -39627.429399] SLOW spr round 25 (radius: 25)
[07:43:00 -39624.876529] SLOW spr round 26 (radius: 5)
[07:46:13 -39624.876507] SLOW spr round 27 (radius: 10)
[07:49:23 -39624.876498] SLOW spr round 28 (radius: 15)
[07:52:44 -39624.876489] SLOW spr round 29 (radius: 20)
[07:57:23 -39624.876481] SLOW spr round 30 (radius: 25)
[08:03:30 -39624.876472] Model parameter optimization (eps = 0.100000)

[08:03:45] [worker #0] ML tree search #16, logLikelihood: -39624.566218


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.282069,0.522191) (0.213494,0.618144) (0.328357,0.886860) (0.176080,2.439397) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -39600.891500

AIC score: 83211.783000 / AICc score: 8127271.783000 / BIC score: 90198.800852
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=241).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 3 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P10826/3_mltree/P10826.raxml.log

Analysis started: 30-Jun-2021 17:07:45 / finished: 01-Jul-2021 01:11:31

Elapsed time: 29026.082 seconds