RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 00:59:32 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/2_msa/P10644_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/3_mltree/P10644.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622671172 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/2_msa/P10644_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 381 sites WARNING: Sequences tr_B4QHU9_B4QHU9_DROSI_7240 and tr_B4HMB0_B4HMB0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QJ81_B4QJ81_DROSI_7240 and tr_B4IAG6_B4IAG6_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_A0A158NNW5_A0A158NNW5_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_E2C7R5_E2C7R5_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_A0A026WQN0_A0A026WQN0_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_A0A151WK01_A0A151WK01_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_A0A195BSW6_A0A195BSW6_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_A0A195EWA7_A0A195EWA7_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AEL2_E2AEL2_CAMFO_104421 and tr_A0A151I9B1_A0A151I9B1_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1D5PCI4_A0A1D5PCI4_CHICK_9031 and tr_G1MSK2_G1MSK2_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PCI4_A0A1D5PCI4_CHICK_9031 and tr_A0A091K430_A0A091K430_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PCI4_A0A1D5PCI4_CHICK_9031 and tr_A0A091V9M9_A0A091V9M9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PCI4_A0A1D5PCI4_CHICK_9031 and tr_A0A093H0P1_A0A093H0P1_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PCI4_A0A1D5PCI4_CHICK_9031 and tr_A0A2I0M0R3_A0A2I0M0R3_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PCI4_A0A1D5PCI4_CHICK_9031 and tr_A0A1V4KS84_A0A1V4KS84_PATFA_372326 are exactly identical! WARNING: Sequences tr_M3Z2G1_M3Z2G1_MUSPF_9669 and tr_A0A2Y9J8A5_A0A2Y9J8A5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HG51_A0A2I3HG51_NOMLE_61853 and sp_Q5REL1_KAP0_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HG51_A0A2I3HG51_NOMLE_61853 and tr_H2R3M7_H2R3M7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HG51_A0A2I3HG51_NOMLE_61853 and sp_P10644_KAP0_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HG51_A0A2I3HG51_NOMLE_61853 and tr_A0A2R9AQD9_A0A2R9AQD9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0D8JZ89_A0A0D8JZ89_COCIM_246410 and tr_A0A0J6YM45_A0A0J6YM45_COCIT_404692 are exactly identical! WARNING: Sequences tr_B2VYL4_B2VYL4_PYRTR_426418 and tr_A0A2W1F5H1_A0A2W1F5H1_9PLEO_45151 are exactly identical! WARNING: Sequences tr_G3R8D7_G3R8D7_GORGO_9595 and tr_K7B4J4_K7B4J4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R8D7_G3R8D7_GORGO_9595 and tr_F6QGT4_F6QGT4_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R8D7_G3R8D7_GORGO_9595 and tr_A0A2R9BW82_A0A2R9BW82_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q01386_KAPR_NEUCR_367110 and tr_G4UEQ6_G4UEQ6_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q2M150_Q2M150_DROPS_46245 and tr_B4GUN6_B4GUN6_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8N1Y3_B8N1Y3_ASPFN_332952 and tr_Q2UL64_Q2UL64_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N1Y3_B8N1Y3_ASPFN_332952 and tr_Q5H7P2_Q5H7P2_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_F9FS19_F9FS19_FUSOF_660025 and tr_N4TYF7_N4TYF7_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FS19_F9FS19_FUSOF_660025 and tr_X0CJ27_X0CJ27_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FS19_F9FS19_FUSOF_660025 and tr_A0A2H3SYL5_A0A2H3SYL5_FUSOX_5507 are exactly identical! WARNING: Sequences tr_E9EWM7_E9EWM7_METRA_655844 and tr_A0A0B4H5E6_A0A0B4H5E6_METMF_1276143 are exactly identical! WARNING: Sequences tr_M4API9_M4API9_XIPMA_8083 and tr_A0A087Y9G3_A0A087Y9G3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A287DF89_A0A287DF89_ICTTR_43179 and tr_G1M4D0_G1M4D0_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A287DF89_A0A287DF89_ICTTR_43179 and tr_A0A2U3WRR1_A0A2U3WRR1_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A287DF89_A0A287DF89_ICTTR_43179 and tr_A0A2U3XLB9_A0A2U3XLB9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P13861_KAP2_HUMAN_9606 and tr_A0A2R9AKR7_A0A2R9AKR7_PANPA_9597 are exactly identical! WARNING: Sequences sp_P31323_KAP3_HUMAN_9606 and tr_A0A2R8ZUD6_A0A2R8ZUD6_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6Q503_F6Q503_MACMU_9544 and tr_A0A0D9RG61_A0A0D9RG61_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6Q503_F6Q503_MACMU_9544 and tr_A0A2K5P1E6_A0A2K5P1E6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6Q503_F6Q503_MACMU_9544 and tr_A0A2K6D750_A0A2K6D750_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6WM87_F6WM87_MACMU_9544 and tr_A0A096NU08_A0A096NU08_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6WM87_F6WM87_MACMU_9544 and tr_A0A2K5LJJ4_A0A2K5LJJ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6WM87_F6WM87_MACMU_9544 and tr_A0A2K5XAN8_A0A2K5XAN8_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HAK5_F7HAK5_MACMU_9544 and tr_A0A096N538_A0A096N538_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HAK5_F7HAK5_MACMU_9544 and tr_A0A0D9RS93_A0A0D9RS93_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HAK5_F7HAK5_MACMU_9544 and tr_A0A2K5NDT5_A0A2K5NDT5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7XCM5_G7XCM5_ASPKW_1033177 and tr_A0A117E2A2_A0A117E2A2_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XCM5_G7XCM5_ASPKW_1033177 and tr_A0A146FEX9_A0A146FEX9_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XCM5_G7XCM5_ASPKW_1033177 and tr_A0A1L9N3G1_A0A1L9N3G1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XCM5_G7XCM5_ASPKW_1033177 and tr_A0A317VLV0_A0A317VLV0_9EURO_1448314 are exactly identical! WARNING: Sequences tr_Q7PPI8_Q7PPI8_ANOGA_7165 and tr_A0A084WCY9_A0A084WCY9_ANOSI_74873 are exactly identical! WARNING: Sequences tr_H0Z0Y4_H0Z0Y4_TAEGU_59729 and tr_A0A218UXV2_A0A218UXV2_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZDW3_H0ZDW3_TAEGU_59729 and tr_U3KHR4_U3KHR4_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZDW3_H0ZDW3_TAEGU_59729 and tr_A0A091EMA3_A0A091EMA3_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZDW3_H0ZDW3_TAEGU_59729 and tr_A0A218V855_A0A218V855_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A286ZNQ7_A0A286ZNQ7_PIG_9823 and tr_F6Q9S4_F6Q9S4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1LVX3_G1LVX3_AILME_9646 and tr_A0A2Y9KWE7_A0A2Y9KWE7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1LVX3_G1LVX3_AILME_9646 and tr_A0A384CBV0_A0A384CBV0_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3RUK5_B3RUK5_TRIAD_10228 and tr_A0A369S7L2_A0A369S7L2_9METZ_287889 are exactly identical! WARNING: Sequences tr_G3Y5W3_G3Y5W3_ASPNA_380704 and tr_A0A319APY3_A0A319APY3_9EURO_1450533 are exactly identical! WARNING: Sequences tr_W7LKY4_W7LKY4_GIBM7_334819 and tr_A0A2K0WBF3_A0A2K0WBF3_GIBNY_42673 are exactly identical! WARNING: Sequences tr_A0A0D2XNI7_A0A0D2XNI7_FUSO4_426428 and tr_A0A2H3GYA1_A0A2H3GYA1_FUSOX_327505 are exactly identical! WARNING: Sequences tr_G7E1T9_G7E1T9_MIXOS_764103 and tr_G7E1U0_G7E1U0_MIXOS_764103 are exactly identical! WARNING: Sequences tr_L2FVY6_L2FVY6_COLFN_1213859 and tr_T0JK52_T0JK52_COLGC_1237896 are exactly identical! WARNING: Sequences tr_R0LH91_R0LH91_ANAPL_8839 and tr_A0A087RFU9_A0A087RFU9_APTFO_9233 are exactly identical! WARNING: Sequences tr_S0E1S8_S0E1S8_GIBF5_1279085 and tr_A0A365MXU3_A0A365MXU3_GIBIN_948311 are exactly identical! WARNING: Sequences tr_W2QXL1_W2QXL1_PHYPN_761204 and tr_A0A0W8CV36_A0A0W8CV36_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QXL1_W2QXL1_PHYPN_761204 and tr_W2MD97_W2MD97_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015JTZ7_A0A015JTZ7_9GLOM_1432141 and tr_A0A2H5UF49_A0A2H5UF49_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015LZM8_A0A015LZM8_9GLOM_1432141 and tr_A0A2H5SXJ9_A0A2H5SXJ9_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A0D9RY74_A0A0D9RY74_CHLSB_60711 and tr_A0A2K5P8E3_A0A2K5P8E3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RY74_A0A0D9RY74_CHLSB_60711 and tr_A0A2K6AN24_A0A2K6AN24_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RY74_A0A0D9RY74_CHLSB_60711 and tr_A0A2K5Y5H2_A0A2K5Y5H2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0F0IAV4_A0A0F0IAV4_ASPPU_1403190 and tr_A0A2G7G4Q0_A0A2G7G4Q0_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0F8VNK6_A0A0F8VNK6_9EURO_308745 and tr_A0A2T5LZC3_A0A2T5LZC3_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0EVK7_A0A0K0EVK7_STRVS_75913 and tr_A0A0N5CCF5_A0A0N5CCF5_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151N2J0_A0A151N2J0_ALLMI_8496 and tr_A0A1U8DSW9_A0A1U8DSW9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091J1F0_A0A091J1F0_EGRGA_188379 and tr_A0A091W4N9_A0A091W4N9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093QF45_A0A093QF45_9PASS_328815 and tr_A0A091WL60_A0A091WL60_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091XGJ6_A0A091XGJ6_OPIHO_30419 and tr_A0A0A0B1M7_A0A0A0B1M7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091GB65_A0A091GB65_9AVES_55661 and tr_A0A0A0A1B6_A0A0A0A1B6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A099ZWC4_A0A099ZWC4_CHAVO_50402 and tr_A0A093FZS3_A0A093FZS3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0M742_A0A2I0M742_COLLI_8932 and tr_A0A1V4KVP4_A0A1V4KVP4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0WL72_A0A0V0WL72_9BILA_92179 and tr_A0A0V1PJP5_A0A0V1PJP5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1L861_A0A0V1L861_9BILA_6335 and tr_A0A0V0U8N9_A0A0V0U8N9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3SL90_A0A1S3SL90_SALSA_8030 and tr_A0A060Y2Y3_A0A060Y2Y3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1I7TJI7_A0A1I7TJI7_9PELO_1561998 and tr_A0A1I7TJI8_A0A1I7TJI8_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A1I7TJI7_A0A1I7TJI7_9PELO_1561998 and tr_A0A1I7TJI9_A0A1I7TJI9_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A2G4T6B6_A0A2G4T6B6_9FUNG_1340429 and tr_A0A367K5M3_A0A367K5M3_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U4BSH9_A0A2U4BSH9_TURTR_9739 and tr_A0A2Y9LK68_A0A2Y9LK68_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9T6F1_A0A2Y9T6F1_PHYCD_9755 and tr_A0A384AEE7_A0A384AEE7_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2V5J8T0_A0A2V5J8T0_9EURO_1450541 and tr_A0A2V5GX56_A0A2V5GX56_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 94 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644.raxml.reduced.phy Alignment comprises 1 partitions and 381 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 381 Gaps: 13.68 % Invariant sites: 0.79 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/3_mltree/P10644.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 96 / 7680 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -136441.723878 [00:00:00 -136441.723878] Initial branch length optimization [00:00:00 -131176.166542] Model parameter optimization (eps = 0.100000) [00:00:28] Tree #1, final logLikelihood: -130552.347609 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.143777,0.251049) (0.222891,0.222121) (0.274287,0.815196) (0.359045,1.923988) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10644/4_raxmlng_ancestral/P10644.raxml.log Analysis started: 03-Jun-2021 00:59:32 / finished: 03-Jun-2021 01:00:05 Elapsed time: 32.672 seconds Consumed energy: 2.287 Wh