RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:25:33 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/2_msa/P10275_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/3_mltree/P10275.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676333 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/2_msa/P10275_nogap_msa.fasta [00:00:00] Loaded alignment with 997 taxa and 920 sites WARNING: Sequences sp_O08580_ERR1_MOUSE_10090 and sp_Q5QJV7_ERR1_RAT_10116 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_G1RVM3_G1RVM3_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_E2R7U1_E2R7U1_CANLF_9615 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_W5PNX1_W5PNX1_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and sp_P62510_ERR3_RAT_10116 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_I3MDN3_I3MDN3_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and sp_P62508_ERR3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A287BBC6_A0A287BBC6_PIG_9823 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A0D9RT24_A0A0D9RT24_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A3Q0EBA6_A0A3Q0EBA6_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A1U8CPR2_A0A1U8CPR2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2U3V0B1_A0A2U3V0B1_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2Y9DJU8_A0A2Y9DJU8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2Y9NPV9_A0A2Y9NPV9_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2Y9FL95_A0A2Y9FL95_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3GRF2_G3GRF2_CRIGR_10029 and tr_A0A1S3F347_A0A1S3F347_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3GRF2_G3GRF2_CRIGR_10029 and tr_A0A2U4A4F3_A0A2U4A4F3_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2I2Y1Q8_A0A2I2Y1Q8_GORGO_9595 and tr_A0A2J8PK71_A0A2J8PK71_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y1Q8_A0A2I2Y1Q8_GORGO_9595 and tr_A0A0D9RHQ2_A0A0D9RHQ2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Y1Q8_A0A2I2Y1Q8_GORGO_9595 and tr_A0A2R9B8V6_A0A2R9B8V6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YDJ3_A0A2I2YDJ3_GORGO_9595 and tr_A0A2R9BT94_A0A2R9BT94_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2I3T916_A0A2I3T916_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2R9B4N7_A0A2R9B4N7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_K7DJ98_K7DJ98_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and sp_P11474_ERR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_F7E0X8_F7E0X8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A096NQ39_A0A096NQ39_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A0D9R4C8_A0A0D9R4C8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A2K5L8D5_A0A2K5L8D5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A2K6B4D5_A0A2K6B4D5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A2K5Z665_A0A2K5Z665_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A2R9BL88_A0A2R9BL88_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 and tr_A0A2U4B129_A0A2U4B129_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1NAZ5_G1NAZ5_MELGA_9103 and tr_A0A2I0M533_A0A2I0M533_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1NJI1_G1NJI1_MELGA_9103 and tr_A0A091F5B7_A0A091F5B7_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1NJI1_G1NJI1_MELGA_9103 and tr_A0A093QCI4_A0A093QCI4_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NJI1_G1NJI1_MELGA_9103 and tr_A0A091GGB5_A0A091GGB5_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NJI1_G1NJI1_MELGA_9103 and tr_A0A0A0ALX1_A0A0A0ALX1_CHAVO_50402 are exactly identical! WARNING: Sequences sp_A7X8B3_PRGR_PANTR_9598 and tr_H2Q4L9_H2Q4L9_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2Q8G2_H2Q8G2_PANTR_9598 and tr_A0A2R9AKJ3_A0A2R9AKJ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A3B5QIW1_A0A3B5QIW1_XIPMA_8083 and tr_A0A087Y9K1_A0A087Y9K1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R0L0_A0A3B5R0L0_XIPMA_8083 and tr_A0A087YM74_A0A087YM74_POEFO_48698 are exactly identical! WARNING: Sequences tr_H0VTA7_H0VTA7_CAVPO_10141 and tr_A0A091DBJ0_A0A091DBJ0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F6UFU5_F6UFU5_MACMU_9544 and tr_G7PAI3_G7PAI3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6UFU5_F6UFU5_MACMU_9544 and tr_A0A2K6C3F0_A0A2K6C3F0_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_G7P8J4_G7P8J4_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_A0A2K5NJE3_A0A2K5NJE3_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_A0A2K6C3F2_A0A2K6C3F2_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_A0A2K5YNL0_A0A2K5YNL0_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0YXC7_H0YXC7_TAEGU_59729 and tr_A0A091F459_A0A091F459_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZLY1_H0ZLY1_TAEGU_59729 and sp_Q91250_ESR1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F7FPJ5_F7FPJ5_CALJA_9483 and sp_Q95171_ESR2_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7IDY1_F7IDY1_CALJA_9483 and tr_G7PB19_G7PB19_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A096MV60_A0A096MV60_PAPAN_9555 and tr_A0A2K5LM00_A0A2K5LM00_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096MV60_A0A096MV60_PAPAN_9555 and tr_A0A2K5YJS3_A0A2K5YJS3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3LJD1_A0A2I3LJD1_PAPAN_9555 and tr_A0A2K5P240_A0A2K5P240_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LJD1_A0A2I3LJD1_PAPAN_9555 and tr_A0A2K6DWH0_A0A2K6DWH0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 and tr_A0A091VSG6_A0A091VSG6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 and tr_A0A087QXC1_A0A087QXC1_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 and tr_A0A091GHM4_A0A091GHM4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 and tr_A0A0A0A201_A0A0A0A201_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 and tr_A0A093GA30_A0A093GA30_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 and tr_A0A091ITM6_A0A091ITM6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091KF60_A0A091KF60_EGRGA_188379 and tr_A0A091W043_A0A091W043_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091KF60_A0A091KF60_EGRGA_188379 and tr_A0A087R4X0_A0A087R4X0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0V1CQT2_A0A0V1CQT2_TRIBR_45882 and tr_A0A0V0VV58_A0A0V0VV58_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0M5IYX4_A0A0M5IYX4_DROBS_30019 and tr_A0A0M5J8N9_A0A0M5J8N9_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A2K6CS01_A0A2K6CS01_MACNE_9545 and tr_A0A2K6A1Z9_A0A2K6A1Z9_MANLE_9568 are exactly identical! WARNING: Duplicate sequences found: 68 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275.raxml.reduced.phy Alignment comprises 1 partitions and 920 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 920 Gaps: 49.15 % Invariant sites: 2.61 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/3_mltree/P10275.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 230 / 18400 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -218042.553582 [00:00:00 -218042.553582] Initial branch length optimization [00:00:02 -181026.204005] Model parameter optimization (eps = 0.100000) [00:01:01] Tree #1, final logLikelihood: -180428.134947 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.133605,0.184146) (0.102559,0.238745) (0.246189,0.547251) (0.517647,1.576721) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P10275/4_raxmlng_ancestral/P10275.raxml.log Analysis started: 03-Jun-2021 02:25:33 / finished: 03-Jun-2021 02:26:44 Elapsed time: 70.473 seconds Consumed energy: 3.028 Wh