RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 18-Jul-2021 01:34:25 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/2_msa/P0C7H8_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8 --seed 2 --threads 3 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/2_msa/P0C7H8_trimmed_msa.fasta
[00:00:00] Loaded alignment with 465 taxa and 157 sites

WARNING: Sequences tr_A0PK51_A0PK51_MOUSE_10090 and tr_Q9D3H4_Q9D3H4_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_G3RXP1_G3RXP1_GORGO_9595 and tr_G3S775_G3S775_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G3RXP1_G3RXP1_GORGO_9595 and sp_Q9BYU5_KRA21_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RXP1_G3RXP1_GORGO_9595 and tr_A0A2R8Z693_A0A2R8Z693_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1TFG3_G1TFG3_RABIT_9986 and tr_G1U081_G1U081_RABIT_9986 are exactly identical!
WARNING: Sequences tr_A0A2I3RYQ7_A0A2I3RYQ7_PANTR_9598 and tr_A0A2R9ACU5_A0A2R9ACU5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3TDL2_A0A2I3TDL2_PANTR_9598 and tr_A0A2R8ZLW8_A0A2R8ZLW8_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P0C7H8_KRA23_HUMAN_9606 and sp_Q9BYR9_KRA24_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_F6WQI1_F6WQI1_MACMU_9544 and tr_G8F6E0_G8F6E0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6WQI1_F6WQI1_MACMU_9544 and tr_A0A096N9X2_A0A096N9X2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6WQI1_F6WQI1_MACMU_9544 and tr_A0A0D9SCF2_A0A0D9SCF2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6WQI1_F6WQI1_MACMU_9544 and tr_A0A2K5L1M7_A0A2K5L1M7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6WQI1_F6WQI1_MACMU_9544 and tr_A0A2K6AMA0_A0A2K6AMA0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6WQI1_F6WQI1_MACMU_9544 and tr_A0A2K5XD40_A0A2K5XD40_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I2UUE3_A0A2I2UUE3_FELCA_9685 and tr_M3WUG5_M3WUG5_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A2U3VJJ1_A0A2U3VJJ1_ODORO_9708 and tr_A0A2U3VJV2_A0A2U3VJV2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A2Y9JUX8_A0A2Y9JUX8_ENHLU_391180 and tr_A0A384C0J9_A0A384C0J9_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A2Y9JUX8_A0A2Y9JUX8_ENHLU_391180 and tr_A0A384C168_A0A384C168_URSMA_29073 are exactly identical!
WARNING: Duplicate sequences found: 18

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8.raxml.reduced.phy

Alignment comprises 1 partitions and 157 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 157 / 157
Gaps: 21.27 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8.raxml.rba

Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 465 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 157 / 12560
[00:00:00] Data distribution: max. searches per worker: 7

Starting ML tree search with 20 distinct starting trees

[00:00:00 -80561.230211] Initial branch length optimization
[00:00:01 -70121.841337] Model parameter optimization (eps = 10.000000)
[00:00:22 -69684.795976] AUTODETECT spr round 1 (radius: 5)
[00:00:58 -46773.908373] AUTODETECT spr round 2 (radius: 10)
[00:01:38 -36170.718009] AUTODETECT spr round 3 (radius: 15)
[00:02:30 -32008.898913] AUTODETECT spr round 4 (radius: 20)
[00:03:30 -31408.212905] AUTODETECT spr round 5 (radius: 25)
[00:04:28 -31135.999072] SPR radius for FAST iterations: 25 (autodetect)
[00:04:28 -31135.999072] Model parameter optimization (eps = 3.000000)
[00:04:46 -30786.478637] FAST spr round 1 (radius: 25)
[00:05:31 -28235.082130] FAST spr round 2 (radius: 25)
[00:06:07 -28116.164657] FAST spr round 3 (radius: 25)
[00:06:38 -28091.853449] FAST spr round 4 (radius: 25)
[00:07:05 -28091.852425] Model parameter optimization (eps = 1.000000)
[00:07:12 -28090.707000] SLOW spr round 1 (radius: 5)
[00:07:58 -28082.774132] SLOW spr round 2 (radius: 5)
[00:08:41 -28081.289153] SLOW spr round 3 (radius: 5)
[00:09:21 -28081.288632] SLOW spr round 4 (radius: 10)
[00:10:00 -28074.754715] SLOW spr round 5 (radius: 5)
[00:10:57 -28072.921097] SLOW spr round 6 (radius: 5)
[00:11:47 -28069.095630] SLOW spr round 7 (radius: 5)
[00:12:31 -28067.688557] SLOW spr round 8 (radius: 5)
[00:13:11 -28067.688414] SLOW spr round 9 (radius: 10)
[00:13:50 -28067.688414] SLOW spr round 10 (radius: 15)
[00:14:54 -28067.688414] SLOW spr round 11 (radius: 20)
[00:16:17 -28067.438007] SLOW spr round 12 (radius: 5)
[00:17:17 -28066.426031] SLOW spr round 13 (radius: 5)
[00:18:06 -28066.426027] SLOW spr round 14 (radius: 10)
[00:18:49 -28066.426027] SLOW spr round 15 (radius: 15)
[00:19:50 -28066.426027] SLOW spr round 16 (radius: 20)
[00:21:13 -28066.426027] SLOW spr round 17 (radius: 25)
[00:21:49] [worker #2] ML tree search #3, logLikelihood: -28028.894578
[00:22:41 -28047.132019] SLOW spr round 18 (radius: 5)
[00:23:44 -28038.151018] SLOW spr round 19 (radius: 5)
[00:24:35 -28038.149752] SLOW spr round 20 (radius: 10)
[00:25:17 -28038.149700] SLOW spr round 21 (radius: 15)
[00:26:20 -28038.149695] SLOW spr round 22 (radius: 20)
[00:27:49 -28038.149694] SLOW spr round 23 (radius: 25)
[00:29:27 -28036.656366] SLOW spr round 24 (radius: 5)
[00:30:29 -28032.989776] SLOW spr round 25 (radius: 5)
[00:31:19 -28032.989723] SLOW spr round 26 (radius: 10)
[00:32:01 -28032.989720] SLOW spr round 27 (radius: 15)
[00:33:04 -28032.989720] SLOW spr round 28 (radius: 20)
[00:34:35 -28032.989720] SLOW spr round 29 (radius: 25)
[00:34:42] [worker #1] ML tree search #2, logLikelihood: -28026.850821
[00:36:14 -28032.989720] Model parameter optimization (eps = 0.100000)

[00:36:21] [worker #0] ML tree search #1, logLikelihood: -28032.145016

[00:36:21 -79918.461871] Initial branch length optimization
[00:36:22 -69360.055531] Model parameter optimization (eps = 10.000000)
[00:36:40 -68967.926287] AUTODETECT spr round 1 (radius: 5)
[00:37:16 -48949.654763] AUTODETECT spr round 2 (radius: 10)
[00:37:58 -38274.521988] AUTODETECT spr round 3 (radius: 15)
[00:38:51 -32706.847604] AUTODETECT spr round 4 (radius: 20)
[00:39:48 -31269.747697] AUTODETECT spr round 5 (radius: 25)
[00:40:50 -31155.129816] SPR radius for FAST iterations: 25 (autodetect)
[00:40:50 -31155.129816] Model parameter optimization (eps = 3.000000)
[00:41:01 -30840.814786] FAST spr round 1 (radius: 25)
[00:41:48 -28361.149687] FAST spr round 2 (radius: 25)
[00:42:26 -28117.045254] FAST spr round 3 (radius: 25)
[00:43:01 -28085.509670] FAST spr round 4 (radius: 25)
[00:43:31 -28077.176066] FAST spr round 5 (radius: 25)
[00:44:03 -28067.273033] FAST spr round 6 (radius: 25)
[00:44:30 -28063.533464] FAST spr round 7 (radius: 25)
[00:44:59 -28053.333680] FAST spr round 8 (radius: 25)
[00:45:26 -28053.332934] Model parameter optimization (eps = 1.000000)
[00:45:32 -28052.258330] SLOW spr round 1 (radius: 5)
[00:46:17 -28031.622312] SLOW spr round 2 (radius: 5)
[00:47:00 -28028.981740] SLOW spr round 3 (radius: 5)
[00:47:41 -28026.677511] SLOW spr round 4 (radius: 5)
[00:48:23 -28025.383209] SLOW spr round 5 (radius: 5)
[00:49:04 -28023.445728] SLOW spr round 6 (radius: 5)
[00:49:43 -28023.445407] SLOW spr round 7 (radius: 10)
[00:50:24 -28023.263638] SLOW spr round 8 (radius: 5)
[00:50:30] [worker #2] ML tree search #6, logLikelihood: -28031.960080
[00:51:20 -28023.263631] SLOW spr round 9 (radius: 10)
[00:52:07 -28023.263631] SLOW spr round 10 (radius: 15)
[00:53:14 -28023.263631] SLOW spr round 11 (radius: 20)
[00:54:50 -28023.263631] SLOW spr round 12 (radius: 25)
[00:56:45 -28023.263631] Model parameter optimization (eps = 0.100000)

[00:56:48] [worker #0] ML tree search #4, logLikelihood: -28023.182943

[00:56:48 -79780.402835] Initial branch length optimization
[00:56:49 -69662.463812] Model parameter optimization (eps = 10.000000)
[00:57:09 -69270.067099] AUTODETECT spr round 1 (radius: 5)
[00:57:46 -47520.963745] AUTODETECT spr round 2 (radius: 10)
[00:58:29 -37091.893244] AUTODETECT spr round 3 (radius: 15)
[00:59:21 -34221.342067] AUTODETECT spr round 4 (radius: 20)
[01:00:13 -33826.509691] AUTODETECT spr round 5 (radius: 25)
[01:01:21 -32482.281907] SPR radius for FAST iterations: 25 (autodetect)
[01:01:21 -32482.281907] Model parameter optimization (eps = 3.000000)
[01:01:33 -32136.608852] FAST spr round 1 (radius: 25)
[01:02:21 -28498.125748] FAST spr round 2 (radius: 25)
[01:03:00 -28098.393390] FAST spr round 3 (radius: 25)
[01:03:34 -28063.057569] FAST spr round 4 (radius: 25)
[01:04:03 -28060.886842] FAST spr round 5 (radius: 25)
[01:04:30 -28060.886575] Model parameter optimization (eps = 1.000000)
[01:04:34 -28060.339872] SLOW spr round 1 (radius: 5)
[01:05:19 -28054.249749] SLOW spr round 2 (radius: 5)
[01:06:01 -28053.598080] SLOW spr round 3 (radius: 5)
[01:06:40 -28053.597752] SLOW spr round 4 (radius: 10)
[01:07:21 -28047.260854] SLOW spr round 5 (radius: 5)
[01:08:18 -28045.896150] SLOW spr round 6 (radius: 5)
[01:09:05 -28045.891055] SLOW spr round 7 (radius: 10)
[01:09:46 -28045.891054] SLOW spr round 8 (radius: 15)
[01:10:47 -28044.419015] SLOW spr round 9 (radius: 5)
[01:11:51 -28035.150009] SLOW spr round 10 (radius: 5)
[01:12:42 -28033.159247] SLOW spr round 11 (radius: 5)
[01:13:26 -28032.297546] SLOW spr round 12 (radius: 5)
[01:13:36] [worker #1] ML tree search #5, logLikelihood: -28024.333273
[01:14:07 -28032.281918] SLOW spr round 13 (radius: 10)
[01:14:47 -28032.281831] SLOW spr round 14 (radius: 15)
[01:15:54 -28032.281829] SLOW spr round 15 (radius: 20)
[01:17:25 -28032.281829] SLOW spr round 16 (radius: 25)
[01:19:09 -28032.281829] Model parameter optimization (eps = 0.100000)

[01:19:14] [worker #0] ML tree search #7, logLikelihood: -28032.189173

[01:19:14 -79890.708586] Initial branch length optimization
[01:19:15 -69613.987149] Model parameter optimization (eps = 10.000000)
[01:19:32 -69187.776471] AUTODETECT spr round 1 (radius: 5)
[01:20:08 -49035.538122] AUTODETECT spr round 2 (radius: 10)
[01:20:52 -37636.949266] AUTODETECT spr round 3 (radius: 15)
[01:21:44 -32899.220988] AUTODETECT spr round 4 (radius: 20)
[01:22:44 -31383.747760] AUTODETECT spr round 5 (radius: 25)
[01:23:11] [worker #2] ML tree search #9, logLikelihood: -28049.801235
[01:23:49 -31207.501723] SPR radius for FAST iterations: 25 (autodetect)
[01:23:49 -31207.501723] Model parameter optimization (eps = 3.000000)
[01:24:03 -30886.960684] FAST spr round 1 (radius: 25)
[01:24:46 -28379.981083] FAST spr round 2 (radius: 25)
[01:25:23 -28098.102802] FAST spr round 3 (radius: 25)
[01:25:58 -28068.123245] FAST spr round 4 (radius: 25)
[01:26:28 -28058.748113] FAST spr round 5 (radius: 25)
[01:26:56 -28058.748052] Model parameter optimization (eps = 1.000000)
[01:27:04 -28055.982533] SLOW spr round 1 (radius: 5)
[01:27:49 -28043.955964] SLOW spr round 2 (radius: 5)
[01:28:33 -28043.915376] SLOW spr round 3 (radius: 10)
[01:29:14 -28039.574168] SLOW spr round 4 (radius: 5)
[01:30:11 -28038.923163] SLOW spr round 5 (radius: 5)
[01:30:59 -28038.923060] SLOW spr round 6 (radius: 10)
[01:31:41 -28038.922873] SLOW spr round 7 (radius: 15)
[01:32:41 -28038.922872] SLOW spr round 8 (radius: 20)
[01:34:03 -28036.150978] SLOW spr round 9 (radius: 5)
[01:35:03 -28036.150975] SLOW spr round 10 (radius: 10)
[01:35:53 -28036.150975] SLOW spr round 11 (radius: 15)
[01:36:52 -28036.150974] SLOW spr round 12 (radius: 20)
[01:38:10] [worker #2] ML tree search #12, logLikelihood: -28033.714788
[01:38:13 -28036.150974] SLOW spr round 13 (radius: 25)
[01:39:44 -28036.150974] Model parameter optimization (eps = 0.100000)

[01:39:48] [worker #0] ML tree search #10, logLikelihood: -28036.096546

[01:39:48 -80351.875742] Initial branch length optimization
[01:39:49] [worker #1] ML tree search #8, logLikelihood: -28037.162289
[01:39:50 -69938.543439] Model parameter optimization (eps = 10.000000)
[01:40:06 -69581.448102] AUTODETECT spr round 1 (radius: 5)
[01:40:43 -47438.573614] AUTODETECT spr round 2 (radius: 10)
[01:41:22 -36943.083441] AUTODETECT spr round 3 (radius: 15)
[01:42:13 -34001.936093] AUTODETECT spr round 4 (radius: 20)
[01:43:06 -33226.677171] AUTODETECT spr round 5 (radius: 25)
[01:44:02 -33201.271734] SPR radius for FAST iterations: 25 (autodetect)
[01:44:02 -33201.271734] Model parameter optimization (eps = 3.000000)
[01:44:26 -32804.767560] FAST spr round 1 (radius: 25)
[01:45:08 -30149.761025] FAST spr round 2 (radius: 25)
[01:45:46 -28824.705199] FAST spr round 3 (radius: 25)
[01:46:20 -28188.496685] FAST spr round 4 (radius: 25)
[01:46:54 -28161.415851] FAST spr round 5 (radius: 25)
[01:47:23 -28157.582633] FAST spr round 6 (radius: 25)
[01:47:50 -28157.158539] FAST spr round 7 (radius: 25)
[01:48:17 -28157.158520] Model parameter optimization (eps = 1.000000)
[01:48:24 -28151.582196] SLOW spr round 1 (radius: 5)
[01:49:09 -28146.079675] SLOW spr round 2 (radius: 5)
[01:49:52 -28142.138933] SLOW spr round 3 (radius: 5)
[01:50:32 -28142.138243] SLOW spr round 4 (radius: 10)
[01:51:12 -28141.938116] SLOW spr round 5 (radius: 5)
[01:52:08 -28141.938080] SLOW spr round 6 (radius: 10)
[01:52:54 -28141.938080] SLOW spr round 7 (radius: 15)
[01:53:55 -28141.938080] SLOW spr round 8 (radius: 20)
[01:55:22 -28140.456615] SLOW spr round 9 (radius: 5)
[01:55:36] [worker #2] ML tree search #15, logLikelihood: -28044.477039
[01:56:23 -28139.983040] SLOW spr round 10 (radius: 5)
[01:57:13 -28139.983037] SLOW spr round 11 (radius: 10)
[01:57:57 -28139.983037] SLOW spr round 12 (radius: 15)
[01:58:59 -28139.983037] SLOW spr round 13 (radius: 20)
[02:00:26 -28139.983037] SLOW spr round 14 (radius: 25)
[02:02:09 -28114.614059] SLOW spr round 15 (radius: 5)
[02:03:13 -28036.401791] SLOW spr round 16 (radius: 5)
[02:03:46] [worker #1] ML tree search #11, logLikelihood: -28048.624390
[02:04:06 -28026.829138] SLOW spr round 17 (radius: 5)
[02:04:52 -28025.602320] SLOW spr round 18 (radius: 5)
[02:05:34 -28025.602319] SLOW spr round 19 (radius: 10)
[02:06:14 -28025.602319] SLOW spr round 20 (radius: 15)
[02:07:18 -28025.602319] SLOW spr round 21 (radius: 20)
[02:08:44 -28025.602319] SLOW spr round 22 (radius: 25)
[02:10:26 -28025.602319] Model parameter optimization (eps = 0.100000)

[02:10:32] [worker #0] ML tree search #13, logLikelihood: -28025.449137

[02:10:33 -80378.947690] Initial branch length optimization
[02:10:34 -69822.223152] Model parameter optimization (eps = 10.000000)
[02:10:53 -69394.129160] AUTODETECT spr round 1 (radius: 5)
[02:11:29 -48705.024294] AUTODETECT spr round 2 (radius: 10)
[02:12:11 -38981.330413] AUTODETECT spr round 3 (radius: 15)
[02:13:04 -35463.672637] AUTODETECT spr round 4 (radius: 20)
[02:14:10 -32597.506351] AUTODETECT spr round 5 (radius: 25)
[02:15:19 -32262.563168] SPR radius for FAST iterations: 25 (autodetect)
[02:15:19 -32262.563168] Model parameter optimization (eps = 3.000000)
[02:15:31 -31940.584286] FAST spr round 1 (radius: 25)
[02:16:17 -28280.333232] FAST spr round 2 (radius: 25)
[02:16:53 -28102.540397] FAST spr round 3 (radius: 25)
[02:17:25 -28080.102669] FAST spr round 4 (radius: 25)
[02:17:53 -28078.749247] FAST spr round 5 (radius: 25)
[02:18:21 -28078.739835] Model parameter optimization (eps = 1.000000)
[02:18:25 -28076.113339] SLOW spr round 1 (radius: 5)
[02:19:11 -28070.511441] SLOW spr round 2 (radius: 5)
[02:19:55 -28067.024783] SLOW spr round 3 (radius: 5)
[02:20:36 -28066.483168] SLOW spr round 4 (radius: 5)
[02:21:16 -28066.483066] SLOW spr round 5 (radius: 10)
[02:21:55 -28061.687286] SLOW spr round 6 (radius: 5)
[02:22:52 -28059.351811] SLOW spr round 7 (radius: 5)
[02:23:38 -28059.351809] SLOW spr round 8 (radius: 10)
[02:23:39] [worker #2] ML tree search #18, logLikelihood: -28032.809553
[02:24:19 -28059.351809] SLOW spr round 9 (radius: 15)
[02:25:23 -28057.260680] SLOW spr round 10 (radius: 5)
[02:26:22 -28057.260612] SLOW spr round 11 (radius: 10)
[02:27:11 -28057.260610] SLOW spr round 12 (radius: 15)
[02:28:13 -28056.376758] SLOW spr round 13 (radius: 5)
[02:29:12 -28056.376708] SLOW spr round 14 (radius: 10)
[02:30:02 -28056.376707] SLOW spr round 15 (radius: 15)
[02:31:04 -28055.669830] SLOW spr round 16 (radius: 5)
[02:31:22] [worker #1] ML tree search #14, logLikelihood: -28046.240073
[02:32:02 -28055.669819] SLOW spr round 17 (radius: 10)
[02:32:52 -28055.669818] SLOW spr round 18 (radius: 15)
[02:33:54 -28055.669818] SLOW spr round 19 (radius: 20)
[02:35:26 -28055.669818] SLOW spr round 20 (radius: 25)
[02:37:08 -28055.669818] Model parameter optimization (eps = 0.100000)

[02:37:11] [worker #0] ML tree search #16, logLikelihood: -28055.650882

[02:37:11 -80259.582599] Initial branch length optimization
[02:37:12 -69880.497260] Model parameter optimization (eps = 10.000000)
[02:37:29 -69431.518804] AUTODETECT spr round 1 (radius: 5)
[02:38:04 -47807.226685] AUTODETECT spr round 2 (radius: 10)
[02:38:45 -39093.921132] AUTODETECT spr round 3 (radius: 15)
[02:39:35 -33510.402745] AUTODETECT spr round 4 (radius: 20)
[02:40:30 -32342.319805] AUTODETECT spr round 5 (radius: 25)
[02:41:33 -32120.192339] SPR radius for FAST iterations: 25 (autodetect)
[02:41:33 -32120.192339] Model parameter optimization (eps = 3.000000)
[02:41:50 -31808.639695] FAST spr round 1 (radius: 25)
[02:42:33 -29081.769935] FAST spr round 2 (radius: 25)
[02:43:07 -28261.472307] FAST spr round 3 (radius: 25)
[02:43:40 -28118.517433] FAST spr round 4 (radius: 25)
[02:44:10 -28079.482991] FAST spr round 5 (radius: 25)
[02:44:38 -28047.753703] FAST spr round 6 (radius: 25)
[02:45:05 -28032.881871] FAST spr round 7 (radius: 25)
[02:45:31 -28032.881788] Model parameter optimization (eps = 1.000000)
[02:45:38 -28030.779349] SLOW spr round 1 (radius: 5)
[02:46:22 -28026.093392] SLOW spr round 2 (radius: 5)
[02:47:03 -28026.039359] SLOW spr round 3 (radius: 10)
[02:47:42 -28026.002531] SLOW spr round 4 (radius: 15)
[02:48:49 -28026.001514] SLOW spr round 5 (radius: 20)
[02:50:13 -28022.436477] SLOW spr round 6 (radius: 5)
[02:51:14 -28021.828703] SLOW spr round 7 (radius: 5)
[02:52:04 -28021.828596] SLOW spr round 8 (radius: 10)
[02:52:46 -28021.828549] SLOW spr round 9 (radius: 15)
[02:53:50 -28021.828503] SLOW spr round 10 (radius: 20)
[02:54:27] [worker #1] ML tree search #17, logLikelihood: -28047.145130
[02:55:14 -28021.828458] SLOW spr round 11 (radius: 25)
[02:56:51 -28021.828414] Model parameter optimization (eps = 0.100000)

[02:56:54] [worker #0] ML tree search #19, logLikelihood: -28021.821537

[03:17:12] [worker #1] ML tree search #20, logLikelihood: -28034.253269

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.509214,0.701787) (0.012905,1.264656) (0.192815,1.394990) (0.285066,1.253552) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -28021.821537

AIC score: 57909.643073 / AICc score: 1800753.643073 / BIC score: 60761.120410
Free parameters (model + branch lengths): 933

WARNING: Number of free parameters (K=933) is larger than alignment size (n=157).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P0C7H8/3_mltree/P0C7H8.raxml.log

Analysis started: 18-Jul-2021 01:34:25 / finished: 18-Jul-2021 04:51:38

Elapsed time: 11832.686 seconds