RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 15-Jul-2021 02:43:26 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/2_msa/P0C5J1_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/2_msa/P0C5J1_trimmed_msa.fasta
[00:00:00] Loaded alignment with 382 taxa and 11 sites

WARNING: Sequences tr_V7CU71_V7CU71_PHAVU_3885 and tr_A0A0L9V268_A0A0L9V268_PHAAN_3914 are exactly identical!
WARNING: Sequences tr_V7CU71_V7CU71_PHAVU_3885 and tr_A0A1S2Y3T6_A0A1S2Y3T6_CICAR_3827 are exactly identical!
WARNING: Sequences tr_V7CU71_V7CU71_PHAVU_3885 and tr_A0A1S3UH93_A0A1S3UH93_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_V7CU71_V7CU71_PHAVU_3885 and tr_A0A251TPE7_A0A251TPE7_HELAN_4232 are exactly identical!
WARNING: Sequences tr_E9FXE6_E9FXE6_DAPPU_6669 and tr_A0A164VMW5_A0A164VMW5_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_F1P2U5_F1P2U5_CHICK_9031 and tr_A0A0A0AYD6_A0A0A0AYD6_CHAVO_50402 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_M3YTR8_M3YTR8_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2I3GQ89_A0A2I3GQ89_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G1QRW4_G1QRW4_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G3HY31_G3HY31_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G3R4N9_G3R4N9_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G3S5W9_G3S5W9_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G3SFU5_G3SFU5_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_H2NCL8_H2NCL8_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_H2PCI3_H2PCI3_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G1THF2_G1THF2_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_E2R825_E2R825_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2I3TIJ8_A0A2I3TIJ8_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2I3TPX8_A0A2I3TPX8_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_H2RAC2_H2RAC2_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_K7CAR1_K7CAR1_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_F6TKJ5_F6TKJ5_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_D3Z8P8_D3Z8P8_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_I3MQU1_I3MQU1_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_H0XYD4_H0XYD4_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_H0VPL8_H0VPL8_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and sp_P0C5J1_F86B2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and sp_Q8N7N1_F86B1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and sp_Q96G04_EF2KT_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A1D5RJR2_A0A1D5RJR2_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G5B2M7_G5B2M7_HETGA_10181 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_K7GDG1_K7GDG1_PELSI_13735 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G3U1W1_G3U1W1_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G3WIA7_G3WIA7_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_U3DY20_U3DY20_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G1L3U3_G1L3U3_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_G7Q0F9_G7Q0F9_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_M3X3N3_M3X3N3_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A096NLK1_A0A096NLK1_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A091D2T0_A0A091D2T0_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A0D9R8R2_A0A0D9R8R2_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A151N6Y9_A0A151N6Y9_ALLMI_8496 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A1S3ES16_A0A1S3ES16_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A3Q0GIS0_A0A3Q0GIS0_ALLSI_38654 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A3Q0D9E1_A0A3Q0D9E1_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2K5NVM6_A0A2K5NVM6_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2K6C8L4_A0A2K6C8L4_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2K5Z5T4_A0A2K5Z5T4_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2R9AJP7_A0A2R9AJP7_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2R9BIE2_A0A2R9BIE2_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2U3W5C1_A0A2U3W5C1_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2U3YV01_A0A2U3YV01_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A2Y9KLC7_A0A2Y9KLC7_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q3UZW7_EF2KT_MOUSE_10090 and tr_A0A384CJT5_A0A384CJT5_URSMA_29073 are exactly identical!
WARNING: Sequences tr_W5J5K2_W5J5K2_ANODA_43151 and tr_Q7QB05_Q7QB05_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_W5J5K2_W5J5K2_ANODA_43151 and tr_A0A084WP34_A0A084WP34_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_M4AFB8_M4AFB8_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_I3JSQ2_I3JSQ2_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_H2RLB4_H2RLB4_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_H3CRR6_H3CRR6_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_H3D146_H3D146_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_G3PQ28_G3PQ28_GASAC_69293 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_A0A087XPZ7_A0A087XPZ7_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_A0A0P7XCZ2_A0A0P7XCZ2_9TELE_113540 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_A0A0Q3REK1_A0A0Q3REK1_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_B5XFD7_B5XFD7_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_A0A060Z688_A0A060Z688_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_A0A2D0PPV5_A0A2D0PPV5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A3B3H942_A0A3B3H942_ORYLA_8090 and tr_A0A2D0PRF7_A0A2D0PRF7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_W5P4Q5_W5P4Q5_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_F1RKA6_F1RKA6_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_G5E5X4_G5E5X4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and sp_Q1JPJ9_EF2KT_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_L5KH82_L5KH82_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_A0A2U4ATM3_A0A2U4ATM3_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_A0A2Y9PZE2_A0A2Y9PZE2_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_A0A2Y9FM64_A0A2Y9FM64_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1PLZ9_G1PLZ9_MYOLU_59463 and tr_A0A384A3T8_A0A384A3T8_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G3QM40_G3QM40_GORGO_9595 and tr_A0A2I3RAY4_A0A2I3RAY4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QM40_G3QM40_GORGO_9595 and tr_A0A2R8ZGH5_A0A2R8ZGH5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QM40_G3QM40_GORGO_9595 and tr_A0A2R9CPZ7_A0A2R9CPZ7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_G0RUN5_G0RUN5_HYPJQ_431241 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A151GAC2_A0A151GAC2_9HYPO_98403 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A168BHX1_A0A168BHX1_CORDF_1081108 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A179HIR7_A0A179HIR7_9HYPO_33203 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A167WSQ1_A0A167WSQ1_9HYPO_1081109 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A2S4KNQ0_A0A2S4KNQ0_9HYPO_94208 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A2T4C0D4_A0A2T4C0D4_TRILO_983965 are exactly identical!
WARNING: Sequences tr_G3JV10_G3JV10_CORMM_983644 and tr_A0A2T4BGJ3_A0A2T4BGJ3_9HYPO_58853 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_U3I6R4_U3I6R4_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A091VUD8_A0A091VUD8_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A087QI92_A0A087QI92_APTFO_9233 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A093K0A1_A0A093K0A1_STRCA_441894 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A091WLE4_A0A091WLE4_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A099ZDZ3_A0A099ZDZ3_TINGU_94827 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A2I0LWV5_A0A2I0LWV5_COLLI_8932 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A093GIC5_A0A093GIC5_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A226MVC3_A0A226MVC3_CALSU_9009 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A226NT43_A0A226NT43_COLVI_9014 are exactly identical!
WARNING: Sequences tr_G1NC19_G1NC19_MELGA_9103 and tr_A0A2U9CYA3_A0A2U9CYA3_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_B8P3X1_B8P3X1_POSPM_561896 and tr_B8PMJ3_B8PMJ3_POSPM_561896 are exactly identical!
WARNING: Sequences tr_B8P3X1_B8P3X1_POSPM_561896 and tr_A0A1X6MWK3_A0A1X6MWK3_9APHY_670580 are exactly identical!
WARNING: Sequences tr_B8P3X1_B8P3X1_POSPM_561896 and tr_A0A2H3JJB0_A0A2H3JJB0_WOLCO_742152 are exactly identical!
WARNING: Sequences tr_Q7RZ16_Q7RZ16_NEUCR_367110 and tr_F7W7C3_F7W7C3_SORMK_771870 are exactly identical!
WARNING: Sequences tr_Q7RZ16_Q7RZ16_NEUCR_367110 and tr_G4UFB2_G4UFB2_NEUT9_510952 are exactly identical!
WARNING: Sequences tr_Q2M161_Q2M161_DROPS_46245 and tr_B4GUL5_B4GUL5_DROPE_7234 are exactly identical!
WARNING: Sequences tr_C5FCB2_C5FCB2_ARTOC_554155 and tr_E5R1Z7_E5R1Z7_ARTGP_535722 are exactly identical!
WARNING: Sequences tr_C5FCB2_C5FCB2_ARTOC_554155 and tr_F2SCS7_F2SCS7_TRIRC_559305 are exactly identical!
WARNING: Sequences tr_C5FCB2_C5FCB2_ARTOC_554155 and tr_F2PNY9_F2PNY9_TRIEC_559882 are exactly identical!
WARNING: Sequences tr_C5FCB2_C5FCB2_ARTOC_554155 and tr_A0A059J3A9_A0A059J3A9_9EURO_1215338 are exactly identical!
WARNING: Sequences tr_A0A2I3S0J4_A0A2I3S0J4_PANTR_9598 and tr_A0A2R8ZNP1_A0A2R8ZNP1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2R5W9_H2R5W9_PANTR_9598 and tr_A0A2R9AWH8_A0A2R9AWH8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_E9DYY7_E9DYY7_METAQ_655827 and tr_A0A0B2WMZ6_A0A0B2WMZ6_METAS_1081103 are exactly identical!
WARNING: Sequences tr_E9DYY7_E9DYY7_METAQ_655827 and tr_A0A0D9NSA8_A0A0D9NSA8_METAN_1291518 are exactly identical!
WARNING: Sequences tr_G4YFA8_G4YFA8_PHYSP_1094619 and tr_K3WBB1_K3WBB1_PYTUL_431595 are exactly identical!
WARNING: Sequences tr_G4YFA8_G4YFA8_PHYSP_1094619 and tr_A0A329SHF4_A0A329SHF4_9STRA_29920 are exactly identical!
WARNING: Sequences tr_J4KPJ5_J4KPJ5_BEAB2_655819 and tr_A0A0A2W9R7_A0A0A2W9R7_BEABA_1245745 are exactly identical!
WARNING: Sequences tr_J4KPJ5_J4KPJ5_BEAB2_655819 and tr_A0A091EZK5_A0A091EZK5_CORBR_85066 are exactly identical!
WARNING: Sequences tr_J4KPJ5_J4KPJ5_BEAB2_655819 and tr_A0A0M8N994_A0A0M8N994_9HYPO_150374 are exactly identical!
WARNING: Sequences tr_J4KPJ5_J4KPJ5_BEAB2_655819 and tr_A0A167PMR9_A0A167PMR9_9HYPO_1081104 are exactly identical!
WARNING: Sequences tr_J4KPJ5_J4KPJ5_BEAB2_655819 and tr_A0A167JX68_A0A167JX68_9HYPO_1081107 are exactly identical!
WARNING: Sequences tr_J4KPJ5_J4KPJ5_BEAB2_655819 and tr_A0A2N6NXZ4_A0A2N6NXZ4_BEABA_176275 are exactly identical!
WARNING: Sequences tr_A0A088AJK3_A0A088AJK3_APIME_7460 and tr_A0A0L7RDU9_A0A0L7RDU9_9HYME_597456 are exactly identical!
WARNING: Sequences tr_H3H1D1_H3H1D1_PHYRM_164328 and tr_M4BPT1_M4BPT1_HYAAE_559515 are exactly identical!
WARNING: Sequences tr_H3H1D1_H3H1D1_PHYRM_164328 and tr_W2QFT8_W2QFT8_PHYPN_761204 are exactly identical!
WARNING: Sequences tr_H3H1D1_H3H1D1_PHYRM_164328 and tr_A0A0W8BUU7_A0A0W8BUU7_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_H3H1D1_H3H1D1_PHYRM_164328 and tr_A0A0W8CN16_A0A0W8CN16_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_H3H1D1_H3H1D1_PHYRM_164328 and tr_W2JER4_W2JER4_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_H3H1D1_H3H1D1_PHYRM_164328 and tr_A0A329SY25_A0A329SY25_9STRA_29920 are exactly identical!
WARNING: Sequences tr_K1R496_K1R496_CRAGI_29159 and tr_A0A210QCN3_A0A210QCN3_MIZYE_6573 are exactly identical!
WARNING: Sequences sp_Q9NVL1_FA86C_HUMAN_9606 and tr_A0A2R9C2V3_A0A2R9C2V3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H0YZ08_H0YZ08_TAEGU_59729 and tr_A0A218UQ56_A0A218UQ56_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F4WEL4_F4WEL4_ACREC_103372 and tr_A0A195E927_A0A195E927_9HYME_471704 are exactly identical!
WARNING: Sequences tr_F4WEL4_F4WEL4_ACREC_103372 and tr_A0A195FN98_A0A195FN98_9HYME_34720 are exactly identical!
WARNING: Sequences tr_F4WEL4_F4WEL4_ACREC_103372 and tr_A0A195C637_A0A195C637_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A8X0H8_A8X0H8_CAEBR_6238 and tr_A0A261CFA3_A0A261CFA3_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_E6ZYG5_E6ZYG5_SPORE_999809 and tr_M9LTC5_M9LTC5_PSEA3_1151754 are exactly identical!
WARNING: Sequences tr_E6ZYG5_E6ZYG5_SPORE_999809 and tr_A0A0F7S364_A0A0F7S364_9BASI_49012 are exactly identical!
WARNING: Sequences tr_B3RQ18_B3RQ18_TRIAD_10228 and tr_A0A369RXK7_A0A369RXK7_9METZ_287889 are exactly identical!
WARNING: Sequences tr_M1WGV1_M1WGV1_CLAP2_1111077 and tr_A0A063BUF5_A0A063BUF5_9HYPO_1159556 are exactly identical!
WARNING: Sequences tr_V2XMR1_V2XMR1_MONRO_1381753 and tr_A0A0W0FL39_A0A0W0FL39_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A3B6B6B3_A0A3B6B6B3_WHEAT_4565 and tr_A0A3B6DLV5_A0A3B6DLV5_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A067DFP2_A0A067DFP2_CITSI_2711 and tr_V4TEN4_V4TEN4_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067DFP2_A0A067DFP2_CITSI_2711 and tr_A0A2H5PBI9_A0A2H5PBI9_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A060SJR9_A0A060SJR9_PYCCI_5643 and tr_A0A1Y2ILT9_A0A1Y2ILT9_PYCCO_1353009 are exactly identical!
WARNING: Sequences tr_N6T0J9_N6T0J9_DENPD_77166 and tr_U4UQB3_U4UQB3_DENPD_77166 are exactly identical!
WARNING: Sequences tr_A0A067BST5_A0A067BST5_SAPPC_695850 and tr_A0A067CER4_A0A067CER4_SAPPC_695850 are exactly identical!
WARNING: Sequences tr_A0A067BZK4_A0A067BZK4_SAPPC_695850 and tr_T0Q6P6_T0Q6P6_9STRA_1156394 are exactly identical!
WARNING: Sequences tr_A0A0D2R0A9_A0A0D2R0A9_GOSRA_29730 and tr_A0A1U8HIC0_A0A1U8HIC0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2R0A9_A0A0D2R0A9_GOSRA_29730 and tr_A0A1U8KQV4_A0A1U8KQV4_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A1W2TUP7_A0A1W2TUP7_ROSNE_77044 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A1C3YN84_A0A1C3YN84_GIBZE_229533 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A1B8AZI5_A0A1B8AZI5_FUSPO_36050 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A1X7RPP7_A0A1X7RPP7_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A2D3UWF8_A0A2D3UWF8_9PEZI_112498 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A2T4GVM1_A0A2T4GVM1_FUSCU_5516 are exactly identical!
WARNING: Sequences tr_A0A0F4GIY1_A0A0F4GIY1_9PEZI_1047168 and tr_A0A366S4E8_A0A366S4E8_9HYPO_2109339 are exactly identical!
WARNING: Sequences tr_A0A0D2F3L8_A0A0D2F3L8_9EURO_1442368 and tr_A0A178ZYU9_A0A178ZYU9_9EURO_1367422 are exactly identical!
WARNING: Sequences tr_A0A1D1V8F0_A0A1D1V8F0_RAMVA_947166 and tr_A0A1D1VDY5_A0A1D1VDY5_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1Q3DWZ3_A0A1Q3DWZ3_LENED_5353 and tr_A0A2H3EF63_A0A2H3EF63_ARMGA_47427 are exactly identical!
WARNING: Sequences tr_A0A2H3CSL5_A0A2H3CSL5_ARMGA_47427 and tr_A0A2H3ART3_A0A2H3ART3_9AGAR_1076256 are exactly identical!
WARNING: Sequences tr_A0A2H3CSL5_A0A2H3CSL5_ARMGA_47427 and tr_A0A284RT24_A0A284RT24_9AGAR_47428 are exactly identical!
WARNING: Sequences tr_A0A2N5TKF1_A0A2N5TKF1_9BASI_200324 and tr_A0A2N5UED5_A0A2N5UED5_9BASI_200324 are exactly identical!
WARNING: Duplicate sequences found: 163

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.reduced.phy

Alignment comprises 1 partitions and 11 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 11 / 11
Gaps: 1.52 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 382 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 11 / 880
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -6868.056612] Initial branch length optimization
[00:00:00 -5241.896321] Model parameter optimization (eps = 10.000000)
[00:00:03 -5003.383482] AUTODETECT spr round 1 (radius: 5)
[00:00:08 -4205.310663] AUTODETECT spr round 2 (radius: 10)
[00:00:15 -3593.221733] AUTODETECT spr round 3 (radius: 15)
[00:00:23 -3078.823994] AUTODETECT spr round 4 (radius: 20)
[00:00:30 -2929.487537] AUTODETECT spr round 5 (radius: 25)
[00:00:39 -2819.804124] SPR radius for FAST iterations: 25 (autodetect)
[00:00:39 -2819.804124] Model parameter optimization (eps = 3.000000)
[00:00:41 -2814.701948] FAST spr round 1 (radius: 25)
[00:00:48 -2615.648386] FAST spr round 2 (radius: 25)
[00:00:54 -2609.693885] FAST spr round 3 (radius: 25)
[00:01:00 -2606.589604] FAST spr round 4 (radius: 25)
[00:01:06 -2606.563979] Model parameter optimization (eps = 1.000000)
[00:01:08 -2605.187390] SLOW spr round 1 (radius: 5)
[00:01:15 -2597.442290] SLOW spr round 2 (radius: 5)
[00:01:22 -2596.425167] SLOW spr round 3 (radius: 5)
[00:01:28 -2596.423763] SLOW spr round 4 (radius: 10)
[00:01:36 -2577.319754] SLOW spr round 5 (radius: 5)
[00:01:44 -2573.548517] SLOW spr round 6 (radius: 5)
[00:01:51 -2571.937964] SLOW spr round 7 (radius: 5)
[00:01:58 -2571.937097] SLOW spr round 8 (radius: 10)
[00:02:05 -2569.515453] SLOW spr round 9 (radius: 5)
[00:02:12 -2569.515399] SLOW spr round 10 (radius: 10)
[00:02:20 -2568.604243] SLOW spr round 11 (radius: 5)
[00:02:27 -2568.148739] SLOW spr round 12 (radius: 5)
[00:02:34 -2568.145573] SLOW spr round 13 (radius: 10)
[00:02:41 -2566.958903] SLOW spr round 14 (radius: 5)
[00:02:49 -2566.958223] SLOW spr round 15 (radius: 10)
[00:02:56 -2566.958186] SLOW spr round 16 (radius: 15)
[00:03:05 -2552.042140] SLOW spr round 17 (radius: 5)
[00:03:13 -2551.741642] SLOW spr round 18 (radius: 5)
[00:03:19 -2551.741642] SLOW spr round 19 (radius: 10)
[00:03:26 -2551.741642] SLOW spr round 20 (radius: 15)
[00:03:35 -2551.741642] SLOW spr round 21 (radius: 20)
[00:03:46 -2518.720577] SLOW spr round 22 (radius: 5)
[00:03:54 -2514.346619] SLOW spr round 23 (radius: 5)
[00:04:01 -2514.346213] SLOW spr round 24 (radius: 10)
[00:04:09 -2512.663190] SLOW spr round 25 (radius: 5)
[00:04:16 -2512.662004] SLOW spr round 26 (radius: 10)
[00:04:23 -2512.661907] SLOW spr round 27 (radius: 15)
[00:04:32 -2510.205466] SLOW spr round 28 (radius: 5)
[00:04:40 -2509.690997] SLOW spr round 29 (radius: 5)
[00:04:47 -2509.690942] SLOW spr round 30 (radius: 10)
[00:04:54 -2509.690932] SLOW spr round 31 (radius: 15)
[00:05:02 -2509.690927] SLOW spr round 32 (radius: 20)
[00:05:12 -2507.372571] SLOW spr round 33 (radius: 5)
[00:05:20 -2505.603114] SLOW spr round 34 (radius: 5)
[00:05:28 -2505.602814] SLOW spr round 35 (radius: 10)
[00:05:35 -2504.895917] SLOW spr round 36 (radius: 5)
[00:05:42 -2500.093816] SLOW spr round 37 (radius: 5)
[00:05:49 -2500.093133] SLOW spr round 38 (radius: 10)
[00:05:56 -2498.330057] SLOW spr round 39 (radius: 5)
[00:06:04 -2493.700864] SLOW spr round 40 (radius: 5)
[00:06:11 -2493.700849] SLOW spr round 41 (radius: 10)
[00:06:18 -2493.700839] SLOW spr round 42 (radius: 15)
[00:06:27 -2492.981891] SLOW spr round 43 (radius: 5)
[00:06:35 -2492.568298] SLOW spr round 44 (radius: 5)
[00:06:42 -2492.568294] SLOW spr round 45 (radius: 10)
[00:06:49 -2492.352100] SLOW spr round 46 (radius: 5)
[00:06:56 -2492.352098] SLOW spr round 47 (radius: 10)
[00:07:04 -2492.352096] SLOW spr round 48 (radius: 15)
[00:07:13 -2492.352095] SLOW spr round 49 (radius: 20)
[00:07:24 -2487.575548] SLOW spr round 50 (radius: 5)
[00:07:32 -2486.525145] SLOW spr round 51 (radius: 5)
[00:07:40 -2486.524780] SLOW spr round 52 (radius: 10)
[00:07:47 -2486.524774] SLOW spr round 53 (radius: 15)
[00:07:56 -2486.524774] SLOW spr round 54 (radius: 20)
[00:08:07 -2486.524774] SLOW spr round 55 (radius: 25)
[00:08:19 -2468.940991] SLOW spr round 56 (radius: 5)
[00:08:28 -2447.760268] SLOW spr round 57 (radius: 5)
[00:08:35 -2447.759787] SLOW spr round 58 (radius: 10)
[00:08:42 -2447.759750] SLOW spr round 59 (radius: 15)
[00:08:52 -2447.759746] SLOW spr round 60 (radius: 20)
[00:09:03 -2427.815615] SLOW spr round 61 (radius: 5)
[00:09:12 -2427.596055] SLOW spr round 62 (radius: 5)
[00:09:19 -2427.596037] SLOW spr round 63 (radius: 10)
[00:09:26 -2427.596037] SLOW spr round 64 (radius: 15)
[00:09:36 -2427.596037] SLOW spr round 65 (radius: 20)
[00:09:48 -2427.596037] SLOW spr round 66 (radius: 25)
[00:10:00 -2413.853375] SLOW spr round 67 (radius: 5)
[00:10:08 -2413.851758] SLOW spr round 68 (radius: 10)
[00:10:16 -2413.577406] SLOW spr round 69 (radius: 5)
[00:10:23 -2412.885416] SLOW spr round 70 (radius: 5)
[00:10:30 -2412.882465] SLOW spr round 71 (radius: 10)
[00:10:37 -2412.882226] SLOW spr round 72 (radius: 15)
[00:10:46 -2412.882210] SLOW spr round 73 (radius: 20)
[00:10:57 -2412.882209] SLOW spr round 74 (radius: 25)
[00:11:08 -2412.882209] Model parameter optimization (eps = 0.100000)

[00:11:10] ML tree search #1, logLikelihood: -2410.141784

[00:11:10 -6863.131367] Initial branch length optimization
[00:11:10 -5212.332290] Model parameter optimization (eps = 10.000000)
[00:11:13 -4994.286525] AUTODETECT spr round 1 (radius: 5)
[00:11:19 -4275.854818] AUTODETECT spr round 2 (radius: 10)
[00:11:25 -3630.278354] AUTODETECT spr round 3 (radius: 15)
[00:11:33 -3250.936003] AUTODETECT spr round 4 (radius: 20)
[00:11:40 -2968.538821] AUTODETECT spr round 5 (radius: 25)
[00:11:48 -2935.054426] SPR radius for FAST iterations: 25 (autodetect)
[00:11:48 -2935.054426] Model parameter optimization (eps = 3.000000)
[00:11:51 -2925.103902] FAST spr round 1 (radius: 25)
[00:11:58 -2632.583011] FAST spr round 2 (radius: 25)
[00:12:04 -2610.246392] FAST spr round 3 (radius: 25)
[00:12:10 -2610.245942] Model parameter optimization (eps = 1.000000)
[00:12:11 -2609.311739] SLOW spr round 1 (radius: 5)
[00:12:18 -2608.890668] SLOW spr round 2 (radius: 5)
[00:12:25 -2608.884325] SLOW spr round 3 (radius: 10)
[00:12:32 -2608.731497] SLOW spr round 4 (radius: 5)
[00:12:39 -2608.731465] SLOW spr round 5 (radius: 10)
[00:12:47 -2607.970584] SLOW spr round 6 (radius: 5)
[00:12:54 -2606.634070] SLOW spr round 7 (radius: 5)
[00:13:01 -2606.631267] SLOW spr round 8 (radius: 10)
[00:13:08 -2605.796729] SLOW spr round 9 (radius: 5)
[00:13:16 -2605.792875] SLOW spr round 10 (radius: 10)
[00:13:23 -2605.126512] SLOW spr round 11 (radius: 5)
[00:13:30 -2605.126414] SLOW spr round 12 (radius: 10)
[00:13:37 -2605.126404] SLOW spr round 13 (radius: 15)
[00:13:46 -2577.527628] SLOW spr round 14 (radius: 5)
[00:13:54 -2576.263766] SLOW spr round 15 (radius: 5)
[00:14:01 -2576.263693] SLOW spr round 16 (radius: 10)
[00:14:08 -2576.263689] SLOW spr round 17 (radius: 15)
[00:14:17 -2575.228956] SLOW spr round 18 (radius: 5)
[00:14:25 -2575.227244] SLOW spr round 19 (radius: 10)
[00:14:32 -2575.227093] SLOW spr round 20 (radius: 15)
[00:14:41 -2575.227080] SLOW spr round 21 (radius: 20)
[00:14:51 -2560.419059] SLOW spr round 22 (radius: 5)
[00:15:00 -2542.433292] SLOW spr round 23 (radius: 5)
[00:15:07 -2542.227864] SLOW spr round 24 (radius: 5)
[00:15:14 -2542.227818] SLOW spr round 25 (radius: 10)
[00:15:21 -2538.353970] SLOW spr round 26 (radius: 5)
[00:15:28 -2538.353216] SLOW spr round 27 (radius: 10)
[00:15:35 -2538.353172] SLOW spr round 28 (radius: 15)
[00:15:44 -2537.171085] SLOW spr round 29 (radius: 5)
[00:15:52 -2537.171082] SLOW spr round 30 (radius: 10)
[00:15:59 -2537.171082] SLOW spr round 31 (radius: 15)
[00:16:07 -2537.171082] SLOW spr round 32 (radius: 20)
[00:16:17 -2537.171082] SLOW spr round 33 (radius: 25)
[00:16:29 -2490.827253] SLOW spr round 34 (radius: 5)
[00:16:37 -2431.976837] SLOW spr round 35 (radius: 5)
[00:16:45 -2399.348356] SLOW spr round 36 (radius: 5)
[00:16:51 -2398.684300] SLOW spr round 37 (radius: 5)
[00:16:58 -2398.684261] SLOW spr round 38 (radius: 10)
[00:17:05 -2395.805216] SLOW spr round 39 (radius: 5)
[00:17:12 -2395.805051] SLOW spr round 40 (radius: 10)
[00:17:19 -2395.805037] SLOW spr round 41 (radius: 15)
[00:17:28 -2344.738024] SLOW spr round 42 (radius: 5)
[00:17:36 -2326.552542] SLOW spr round 43 (radius: 5)
[00:17:43 -2326.479803] SLOW spr round 44 (radius: 10)
[00:17:50 -2326.478498] SLOW spr round 45 (radius: 15)
[00:17:58 -2326.066566] SLOW spr round 46 (radius: 5)
[00:18:06 -2325.853793] SLOW spr round 47 (radius: 5)
[00:18:13 -2325.851092] SLOW spr round 48 (radius: 10)
[00:18:20 -2325.850683] SLOW spr round 49 (radius: 15)
[00:18:29 -2325.850625] SLOW spr round 50 (radius: 20)
[00:18:39 -2325.026392] SLOW spr round 51 (radius: 5)
[00:18:47 -2324.686825] SLOW spr round 52 (radius: 5)
[00:18:54 -2324.686821] SLOW spr round 53 (radius: 10)
[00:19:01 -2324.686821] SLOW spr round 54 (radius: 15)
[00:19:09 -2324.201328] SLOW spr round 55 (radius: 5)
[00:19:17 -2324.048107] SLOW spr round 56 (radius: 5)
[00:19:24 -2324.048107] SLOW spr round 57 (radius: 10)
[00:19:31 -2324.048107] SLOW spr round 58 (radius: 15)
[00:19:40 -2324.048107] SLOW spr round 59 (radius: 20)
[00:19:49 -2323.836553] SLOW spr round 60 (radius: 5)
[00:19:58 -2322.429749] SLOW spr round 61 (radius: 5)
[00:20:04 -2322.429743] SLOW spr round 62 (radius: 10)
[00:20:11 -2322.429743] SLOW spr round 63 (radius: 15)
[00:20:20 -2322.333516] SLOW spr round 64 (radius: 20)
[00:20:30 -2322.332604] SLOW spr round 65 (radius: 25)
[00:20:40 -2322.332560] Model parameter optimization (eps = 0.100000)

[00:20:42] ML tree search #2, logLikelihood: -2318.095305

[00:20:42 -6963.942298] Initial branch length optimization
[00:20:42 -5235.188854] Model parameter optimization (eps = 10.000000)
[00:20:46 -4991.359838] AUTODETECT spr round 1 (radius: 5)
[00:20:51 -4335.228855] AUTODETECT spr round 2 (radius: 10)
[00:20:57 -3614.221922] AUTODETECT spr round 3 (radius: 15)
[00:21:05 -3364.910973] AUTODETECT spr round 4 (radius: 20)
[00:21:12 -3155.208484] AUTODETECT spr round 5 (radius: 25)
[00:21:20 -2989.808137] SPR radius for FAST iterations: 25 (autodetect)
[00:21:20 -2989.808137] Model parameter optimization (eps = 3.000000)
[00:21:23 -2969.511243] FAST spr round 1 (radius: 25)
[00:21:30 -2740.306093] FAST spr round 2 (radius: 25)
[00:21:37 -2701.508960] FAST spr round 3 (radius: 25)
[00:21:43 -2679.255358] FAST spr round 4 (radius: 25)
[00:21:49 -2679.254105] Model parameter optimization (eps = 1.000000)
[00:21:53 -2672.636311] SLOW spr round 1 (radius: 5)
[00:22:00 -2654.461176] SLOW spr round 2 (radius: 5)
[00:22:07 -2652.607738] SLOW spr round 3 (radius: 5)
[00:22:14 -2652.605778] SLOW spr round 4 (radius: 10)
[00:22:21 -2648.533111] SLOW spr round 5 (radius: 5)
[00:22:29 -2647.566760] SLOW spr round 6 (radius: 5)
[00:22:36 -2645.820306] SLOW spr round 7 (radius: 5)
[00:22:42 -2645.820268] SLOW spr round 8 (radius: 10)
[00:22:49 -2645.820259] SLOW spr round 9 (radius: 15)
[00:22:59 -2623.650777] SLOW spr round 10 (radius: 5)
[00:23:07 -2607.047197] SLOW spr round 11 (radius: 5)
[00:23:14 -2606.939983] SLOW spr round 12 (radius: 5)
[00:23:21 -2606.938757] SLOW spr round 13 (radius: 10)
[00:23:28 -2606.695552] SLOW spr round 14 (radius: 5)
[00:23:35 -2606.695508] SLOW spr round 15 (radius: 10)
[00:23:42 -2606.695503] SLOW spr round 16 (radius: 15)
[00:23:51 -2606.087232] SLOW spr round 17 (radius: 5)
[00:23:59 -2603.688489] SLOW spr round 18 (radius: 5)
[00:24:06 -2603.688073] SLOW spr round 19 (radius: 10)
[00:24:13 -2603.687996] SLOW spr round 20 (radius: 15)
[00:24:22 -2602.209993] SLOW spr round 21 (radius: 5)
[00:24:29 -2601.831779] SLOW spr round 22 (radius: 5)
[00:24:37 -2598.945515] SLOW spr round 23 (radius: 5)
[00:24:43 -2598.944948] SLOW spr round 24 (radius: 10)
[00:24:50 -2598.944931] SLOW spr round 25 (radius: 15)
[00:24:59 -2597.535868] SLOW spr round 26 (radius: 5)
[00:25:07 -2597.535704] SLOW spr round 27 (radius: 10)
[00:25:14 -2596.105341] SLOW spr round 28 (radius: 5)
[00:25:21 -2596.105336] SLOW spr round 29 (radius: 10)
[00:25:28 -2596.105336] SLOW spr round 30 (radius: 15)
[00:25:36 -2580.503894] SLOW spr round 31 (radius: 5)
[00:25:44 -2561.884083] SLOW spr round 32 (radius: 5)
[00:25:51 -2546.471673] SLOW spr round 33 (radius: 5)
[00:25:58 -2542.010140] SLOW spr round 34 (radius: 5)
[00:26:04 -2542.009151] SLOW spr round 35 (radius: 10)
[00:26:11 -2542.009116] SLOW spr round 36 (radius: 15)
[00:26:19 -2542.009115] SLOW spr round 37 (radius: 20)
[00:26:29 -2537.324415] SLOW spr round 38 (radius: 5)
[00:26:37 -2537.122234] SLOW spr round 39 (radius: 5)
[00:26:44 -2537.122084] SLOW spr round 40 (radius: 10)
[00:26:51 -2537.122079] SLOW spr round 41 (radius: 15)
[00:26:59 -2537.122079] SLOW spr round 42 (radius: 20)
[00:27:09 -2537.122079] SLOW spr round 43 (radius: 25)
[00:27:19 -2531.264718] SLOW spr round 44 (radius: 5)
[00:27:28 -2520.626299] SLOW spr round 45 (radius: 5)
[00:27:35 -2520.626123] SLOW spr round 46 (radius: 10)
[00:27:42 -2520.626122] SLOW spr round 47 (radius: 15)
[00:27:50 -2520.626120] SLOW spr round 48 (radius: 20)
[00:27:59 -2520.626120] SLOW spr round 49 (radius: 25)
[00:28:09 -2517.614067] SLOW spr round 50 (radius: 5)
[00:28:18 -2513.221099] SLOW spr round 51 (radius: 5)
[00:28:25 -2513.221093] SLOW spr round 52 (radius: 10)
[00:28:31 -2513.221093] SLOW spr round 53 (radius: 15)
[00:28:39 -2508.378756] SLOW spr round 54 (radius: 5)
[00:28:48 -2499.039316] SLOW spr round 55 (radius: 5)
[00:28:54 -2498.687492] SLOW spr round 56 (radius: 5)
[00:29:01 -2498.687488] SLOW spr round 57 (radius: 10)
[00:29:08 -2498.687487] SLOW spr round 58 (radius: 15)
[00:29:16 -2494.073409] SLOW spr round 59 (radius: 5)
[00:29:24 -2477.674425] SLOW spr round 60 (radius: 5)
[00:29:32 -2458.172553] SLOW spr round 61 (radius: 5)
[00:29:39 -2448.117841] SLOW spr round 62 (radius: 5)
[00:29:46 -2446.921777] SLOW spr round 63 (radius: 5)
[00:29:53 -2446.914166] SLOW spr round 64 (radius: 10)
[00:30:00 -2446.914122] SLOW spr round 65 (radius: 15)
[00:30:08 -2445.835641] SLOW spr round 66 (radius: 5)
[00:30:16 -2445.835470] SLOW spr round 67 (radius: 10)
[00:30:23 -2445.835469] SLOW spr round 68 (radius: 15)
[00:30:32 -2440.847801] SLOW spr round 69 (radius: 5)
[00:30:40 -2439.884414] SLOW spr round 70 (radius: 5)
[00:30:47 -2439.884405] SLOW spr round 71 (radius: 10)
[00:30:54 -2439.884405] SLOW spr round 72 (radius: 15)
[00:31:02 -2438.902184] SLOW spr round 73 (radius: 5)
[00:31:10 -2438.902184] SLOW spr round 74 (radius: 10)
[00:31:17 -2438.902184] SLOW spr round 75 (radius: 15)
[00:31:26 -2438.902184] SLOW spr round 76 (radius: 20)
[00:31:36 -2438.902184] SLOW spr round 77 (radius: 25)
[00:31:47 -2430.581554] SLOW spr round 78 (radius: 5)
[00:31:55 -2419.765359] SLOW spr round 79 (radius: 5)
[00:32:02 -2419.765359] SLOW spr round 80 (radius: 10)
[00:32:09 -2419.765359] SLOW spr round 81 (radius: 15)
[00:32:18 -2419.765359] SLOW spr round 82 (radius: 20)
[00:32:28 -2419.765359] SLOW spr round 83 (radius: 25)
[00:32:38 -2419.765359] Model parameter optimization (eps = 0.100000)

[00:32:42] ML tree search #3, logLikelihood: -2416.420048

[00:32:42 -6919.593117] Initial branch length optimization
[00:32:42 -5228.957265] Model parameter optimization (eps = 10.000000)
[00:32:45 -4999.513149] AUTODETECT spr round 1 (radius: 5)
[00:32:51 -4229.607464] AUTODETECT spr round 2 (radius: 10)
[00:32:57 -3753.557518] AUTODETECT spr round 3 (radius: 15)
[00:33:05 -3313.734648] AUTODETECT spr round 4 (radius: 20)
[00:33:13 -3060.553765] AUTODETECT spr round 5 (radius: 25)
[00:33:20 -3002.482846] SPR radius for FAST iterations: 25 (autodetect)
[00:33:20 -3002.482846] Model parameter optimization (eps = 3.000000)
[00:33:23 -2983.847376] FAST spr round 1 (radius: 25)
[00:33:30 -2669.770185] FAST spr round 2 (radius: 25)
[00:33:36 -2628.315227] FAST spr round 3 (radius: 25)
[00:33:42 -2626.340202] FAST spr round 4 (radius: 25)
[00:33:48 -2626.339719] Model parameter optimization (eps = 1.000000)
[00:33:49 -2625.925470] SLOW spr round 1 (radius: 5)
[00:33:56 -2622.430116] SLOW spr round 2 (radius: 5)
[00:34:03 -2622.059977] SLOW spr round 3 (radius: 5)
[00:34:10 -2622.059778] SLOW spr round 4 (radius: 10)
[00:34:17 -2584.606522] SLOW spr round 5 (radius: 5)
[00:34:25 -2580.525312] SLOW spr round 6 (radius: 5)
[00:34:32 -2580.266426] SLOW spr round 7 (radius: 5)
[00:34:39 -2580.263161] SLOW spr round 8 (radius: 10)
[00:34:46 -2580.262265] SLOW spr round 9 (radius: 15)
[00:34:55 -2565.106068] SLOW spr round 10 (radius: 5)
[00:35:03 -2561.665986] SLOW spr round 11 (radius: 5)
[00:35:10 -2561.051828] SLOW spr round 12 (radius: 5)
[00:35:16 -2561.049958] SLOW spr round 13 (radius: 10)
[00:35:23 -2561.049896] SLOW spr round 14 (radius: 15)
[00:35:32 -2554.050187] SLOW spr round 15 (radius: 5)
[00:35:40 -2553.510111] SLOW spr round 16 (radius: 5)
[00:35:47 -2553.509648] SLOW spr round 17 (radius: 10)
[00:35:54 -2553.310618] SLOW spr round 18 (radius: 5)
[00:36:02 -2553.308642] SLOW spr round 19 (radius: 10)
[00:36:09 -2552.907695] SLOW spr round 20 (radius: 5)
[00:36:16 -2552.902782] SLOW spr round 21 (radius: 10)
[00:36:23 -2552.902216] SLOW spr round 22 (radius: 15)
[00:36:32 -2552.676808] SLOW spr round 23 (radius: 5)
[00:36:40 -2552.676245] SLOW spr round 24 (radius: 10)
[00:36:47 -2552.675688] SLOW spr round 25 (radius: 15)
[00:36:55 -2552.675134] SLOW spr round 26 (radius: 20)
[00:37:05 -2551.618490] SLOW spr round 27 (radius: 5)
[00:37:13 -2550.227966] SLOW spr round 28 (radius: 5)
[00:37:20 -2550.227421] SLOW spr round 29 (radius: 10)
[00:37:27 -2550.226882] SLOW spr round 30 (radius: 15)
[00:37:36 -2550.226703] SLOW spr round 31 (radius: 20)
[00:37:45 -2548.291867] SLOW spr round 32 (radius: 5)
[00:37:54 -2548.291800] SLOW spr round 33 (radius: 10)
[00:38:01 -2548.291800] SLOW spr round 34 (radius: 15)
[00:38:09 -2548.291800] SLOW spr round 35 (radius: 20)
[00:38:19 -2548.291800] SLOW spr round 36 (radius: 25)
[00:38:30 -2521.886400] SLOW spr round 37 (radius: 5)
[00:38:38 -2508.120321] SLOW spr round 38 (radius: 5)
[00:38:46 -2507.646836] SLOW spr round 39 (radius: 5)
[00:38:52 -2507.646690] SLOW spr round 40 (radius: 10)
[00:38:59 -2506.947321] SLOW spr round 41 (radius: 5)
[00:39:06 -2506.947319] SLOW spr round 42 (radius: 10)
[00:39:13 -2506.947319] SLOW spr round 43 (radius: 15)
[00:39:22 -2506.947319] SLOW spr round 44 (radius: 20)
[00:39:32 -2502.764077] SLOW spr round 45 (radius: 5)
[00:39:40 -2501.232979] SLOW spr round 46 (radius: 5)
[00:39:47 -2501.232978] SLOW spr round 47 (radius: 10)
[00:39:54 -2501.232978] SLOW spr round 48 (radius: 15)
[00:40:03 -2501.232978] SLOW spr round 49 (radius: 20)
[00:40:13 -2498.344179] SLOW spr round 50 (radius: 5)
[00:40:21 -2479.991438] SLOW spr round 51 (radius: 5)
[00:40:28 -2477.889905] SLOW spr round 52 (radius: 5)
[00:40:35 -2477.889469] SLOW spr round 53 (radius: 10)
[00:40:42 -2477.889365] SLOW spr round 54 (radius: 15)
[00:40:50 -2477.820376] SLOW spr round 55 (radius: 20)
[00:41:00 -2477.820373] SLOW spr round 56 (radius: 25)
[00:41:11 -2477.104746] SLOW spr round 57 (radius: 5)
[00:41:19 -2476.143991] SLOW spr round 58 (radius: 5)
[00:41:26 -2476.143984] SLOW spr round 59 (radius: 10)
[00:41:33 -2476.143984] SLOW spr round 60 (radius: 15)
[00:41:42 -2476.132875] SLOW spr round 61 (radius: 20)
[00:41:52 -2476.132875] SLOW spr round 62 (radius: 25)
[00:42:02 -2476.132875] Model parameter optimization (eps = 0.100000)

[00:42:04] ML tree search #4, logLikelihood: -2474.722515

[00:42:04 -6816.879048] Initial branch length optimization
[00:42:04 -5208.049491] Model parameter optimization (eps = 10.000000)
[00:42:07 -4965.310995] AUTODETECT spr round 1 (radius: 5)
[00:42:13 -4192.494141] AUTODETECT spr round 2 (radius: 10)
[00:42:19 -3725.848289] AUTODETECT spr round 3 (radius: 15)
[00:42:27 -3334.650152] AUTODETECT spr round 4 (radius: 20)
[00:42:34 -3081.771926] AUTODETECT spr round 5 (radius: 25)
[00:42:43 -2854.343867] SPR radius for FAST iterations: 25 (autodetect)
[00:42:43 -2854.343867] Model parameter optimization (eps = 3.000000)
[00:42:46 -2837.283067] FAST spr round 1 (radius: 25)
[00:42:53 -2480.541520] FAST spr round 2 (radius: 25)
[00:42:59 -2466.196461] FAST spr round 3 (radius: 25)
[00:43:05 -2462.337172] FAST spr round 4 (radius: 25)
[00:43:11 -2461.562202] FAST spr round 5 (radius: 25)
[00:43:17 -2461.560432] Model parameter optimization (eps = 1.000000)
[00:43:19 -2460.299408] SLOW spr round 1 (radius: 5)
[00:43:26 -2441.521597] SLOW spr round 2 (radius: 5)
[00:43:33 -2428.171172] SLOW spr round 3 (radius: 5)
[00:43:40 -2428.171128] SLOW spr round 4 (radius: 10)
[00:43:47 -2424.675542] SLOW spr round 5 (radius: 5)
[00:43:54 -2424.300704] SLOW spr round 6 (radius: 5)
[00:44:01 -2424.300699] SLOW spr round 7 (radius: 10)
[00:44:08 -2422.991518] SLOW spr round 8 (radius: 5)
[00:44:15 -2422.991507] SLOW spr round 9 (radius: 10)
[00:44:22 -2422.283654] SLOW spr round 10 (radius: 5)
[00:44:30 -2422.283653] SLOW spr round 11 (radius: 10)
[00:44:37 -2422.283650] SLOW spr round 12 (radius: 15)
[00:44:46 -2414.650999] SLOW spr round 13 (radius: 5)
[00:44:53 -2410.597832] SLOW spr round 14 (radius: 5)
[00:45:01 -2406.668352] SLOW spr round 15 (radius: 5)
[00:45:07 -2406.631504] SLOW spr round 16 (radius: 10)
[00:45:14 -2406.630853] SLOW spr round 17 (radius: 15)
[00:45:23 -2389.988822] SLOW spr round 18 (radius: 5)
[00:45:31 -2389.988734] SLOW spr round 19 (radius: 10)
[00:45:38 -2389.988732] SLOW spr round 20 (radius: 15)
[00:45:46 -2389.988732] SLOW spr round 21 (radius: 20)
[00:45:56 -2387.924143] SLOW spr round 22 (radius: 5)
[00:46:04 -2385.417653] SLOW spr round 23 (radius: 5)
[00:46:11 -2385.003658] SLOW spr round 24 (radius: 5)
[00:46:18 -2385.002748] SLOW spr round 25 (radius: 10)
[00:46:24 -2385.002237] SLOW spr round 26 (radius: 15)
[00:46:33 -2385.001948] SLOW spr round 27 (radius: 20)
[00:46:42 -2384.390976] SLOW spr round 28 (radius: 5)
[00:46:50 -2384.390601] SLOW spr round 29 (radius: 10)
[00:46:57 -2384.052269] SLOW spr round 30 (radius: 5)
[00:47:05 -2384.052162] SLOW spr round 31 (radius: 10)
[00:47:12 -2384.052137] SLOW spr round 32 (radius: 15)
[00:47:20 -2384.052127] SLOW spr round 33 (radius: 20)
[00:47:30 -2384.052121] SLOW spr round 34 (radius: 25)
[00:47:40 -2368.693795] SLOW spr round 35 (radius: 5)
[00:47:48 -2351.364785] SLOW spr round 36 (radius: 5)
[00:47:55 -2351.364517] SLOW spr round 37 (radius: 10)
[00:48:02 -2350.799672] SLOW spr round 38 (radius: 5)
[00:48:10 -2350.612671] SLOW spr round 39 (radius: 5)
[00:48:17 -2350.612244] SLOW spr round 40 (radius: 10)
[00:48:24 -2350.612183] SLOW spr round 41 (radius: 15)
[00:48:32 -2350.507841] SLOW spr round 42 (radius: 5)
[00:48:40 -2350.506821] SLOW spr round 43 (radius: 10)
[00:48:47 -2349.635407] SLOW spr round 44 (radius: 5)
[00:48:54 -2349.635390] SLOW spr round 45 (radius: 10)
[00:49:01 -2349.635382] SLOW spr round 46 (radius: 15)
[00:49:09 -2349.635377] SLOW spr round 47 (radius: 20)
[00:49:19 -2349.468872] SLOW spr round 48 (radius: 5)
[00:49:26 -2349.466240] SLOW spr round 49 (radius: 10)
[00:49:33 -2349.466084] SLOW spr round 50 (radius: 15)
[00:49:42 -2349.466073] SLOW spr round 51 (radius: 20)
[00:49:51 -2349.466072] SLOW spr round 52 (radius: 25)
[00:50:01 -2349.239802] SLOW spr round 53 (radius: 5)
[00:50:09 -2349.239802] SLOW spr round 54 (radius: 10)
[00:50:16 -2349.239802] SLOW spr round 55 (radius: 15)
[00:50:25 -2349.239802] SLOW spr round 56 (radius: 20)
[00:50:34 -2349.239802] SLOW spr round 57 (radius: 25)
[00:50:44 -2349.239802] Model parameter optimization (eps = 0.100000)

[00:50:46] ML tree search #5, logLikelihood: -2347.422054

[00:50:46 -6879.780309] Initial branch length optimization
[00:50:46 -5208.591943] Model parameter optimization (eps = 10.000000)
[00:50:49 -4998.706491] AUTODETECT spr round 1 (radius: 5)
[00:50:55 -4244.651035] AUTODETECT spr round 2 (radius: 10)
[00:51:01 -3740.504935] AUTODETECT spr round 3 (radius: 15)
[00:51:08 -3269.992301] AUTODETECT spr round 4 (radius: 20)
[00:51:16 -3004.186028] AUTODETECT spr round 5 (radius: 25)
[00:51:24 -2897.491317] SPR radius for FAST iterations: 25 (autodetect)
[00:51:24 -2897.491317] Model parameter optimization (eps = 3.000000)
[00:51:26 -2887.145687] FAST spr round 1 (radius: 25)
[00:51:33 -2674.112929] FAST spr round 2 (radius: 25)
[00:51:39 -2637.774087] FAST spr round 3 (radius: 25)
[00:51:45 -2635.078789] FAST spr round 4 (radius: 25)
[00:51:51 -2632.602465] FAST spr round 5 (radius: 25)
[00:51:57 -2631.914486] FAST spr round 6 (radius: 25)
[00:52:03 -2631.912181] Model parameter optimization (eps = 1.000000)
[00:52:05 -2630.097696] SLOW spr round 1 (radius: 5)
[00:52:12 -2627.711271] SLOW spr round 2 (radius: 5)
[00:52:19 -2626.068792] SLOW spr round 3 (radius: 5)
[00:52:26 -2626.011818] SLOW spr round 4 (radius: 10)
[00:52:33 -2615.662722] SLOW spr round 5 (radius: 5)
[00:52:41 -2611.140795] SLOW spr round 6 (radius: 5)
[00:52:48 -2611.138459] SLOW spr round 7 (radius: 10)
[00:52:55 -2611.138407] SLOW spr round 8 (radius: 15)
[00:53:05 -2574.432462] SLOW spr round 9 (radius: 5)
[00:53:13 -2572.672959] SLOW spr round 10 (radius: 5)
[00:53:20 -2572.645253] SLOW spr round 11 (radius: 10)
[00:53:27 -2572.645250] SLOW spr round 12 (radius: 15)
[00:53:37 -2549.327030] SLOW spr round 13 (radius: 5)
[00:53:45 -2541.449742] SLOW spr round 14 (radius: 5)
[00:53:52 -2540.723567] SLOW spr round 15 (radius: 5)
[00:53:59 -2540.723549] SLOW spr round 16 (radius: 10)
[00:54:06 -2540.723549] SLOW spr round 17 (radius: 15)
[00:54:15 -2540.723549] SLOW spr round 18 (radius: 20)
[00:54:27 -2515.392330] SLOW spr round 19 (radius: 5)
[00:54:35 -2502.091828] SLOW spr round 20 (radius: 5)
[00:54:43 -2500.672707] SLOW spr round 21 (radius: 5)
[00:54:49 -2500.672061] SLOW spr round 22 (radius: 10)
[00:54:56 -2500.672050] SLOW spr round 23 (radius: 15)
[00:55:06 -2500.546882] SLOW spr round 24 (radius: 5)
[00:55:14 -2500.544940] SLOW spr round 25 (radius: 10)
[00:55:21 -2499.537056] SLOW spr round 26 (radius: 5)
[00:55:29 -2499.536865] SLOW spr round 27 (radius: 10)
[00:55:36 -2499.324886] SLOW spr round 28 (radius: 5)
[00:55:43 -2498.677063] SLOW spr round 29 (radius: 5)
[00:55:50 -2498.677041] SLOW spr round 30 (radius: 10)
[00:55:57 -2498.677036] SLOW spr round 31 (radius: 15)
[00:56:06 -2498.371676] SLOW spr round 32 (radius: 5)
[00:56:14 -2498.276151] SLOW spr round 33 (radius: 10)
[00:56:21 -2498.273409] SLOW spr round 34 (radius: 15)
[00:56:29 -2498.272873] SLOW spr round 35 (radius: 20)
[00:56:40 -2496.793896] SLOW spr round 36 (radius: 5)
[00:56:48 -2489.013903] SLOW spr round 37 (radius: 5)
[00:56:55 -2485.428332] SLOW spr round 38 (radius: 5)
[00:57:02 -2484.738211] SLOW spr round 39 (radius: 5)
[00:57:08 -2484.738211] SLOW spr round 40 (radius: 10)
[00:57:15 -2482.541266] SLOW spr round 41 (radius: 5)
[00:57:23 -2482.541255] SLOW spr round 42 (radius: 10)
[00:57:30 -2482.541255] SLOW spr round 43 (radius: 15)
[00:57:39 -2466.049243] SLOW spr round 44 (radius: 5)
[00:57:47 -2448.910897] SLOW spr round 45 (radius: 5)
[00:57:54 -2447.981655] SLOW spr round 46 (radius: 5)
[00:58:00 -2447.795966] SLOW spr round 47 (radius: 5)
[00:58:07 -2447.795331] SLOW spr round 48 (radius: 10)
[00:58:14 -2447.795316] SLOW spr round 49 (radius: 15)
[00:58:23 -2429.017699] SLOW spr round 50 (radius: 5)
[00:58:31 -2419.300035] SLOW spr round 51 (radius: 5)
[00:58:38 -2419.300027] SLOW spr round 52 (radius: 10)
[00:58:44 -2419.300027] SLOW spr round 53 (radius: 15)
[00:58:54 -2419.300027] SLOW spr round 54 (radius: 20)
[00:59:05 -2415.167688] SLOW spr round 55 (radius: 5)
[00:59:13 -2414.617121] SLOW spr round 56 (radius: 5)
[00:59:20 -2414.616935] SLOW spr round 57 (radius: 10)
[00:59:27 -2414.616911] SLOW spr round 58 (radius: 15)
[00:59:36 -2413.873295] SLOW spr round 59 (radius: 5)
[00:59:44 -2413.872924] SLOW spr round 60 (radius: 10)
[00:59:51 -2413.872785] SLOW spr round 61 (radius: 15)
[01:00:00 -2413.872730] SLOW spr round 62 (radius: 20)
[01:00:11 -2413.179697] SLOW spr round 63 (radius: 5)
[01:00:19 -2411.578169] SLOW spr round 64 (radius: 5)
[01:00:26 -2410.945185] SLOW spr round 65 (radius: 5)
[01:00:33 -2410.945100] SLOW spr round 66 (radius: 10)
[01:00:40 -2410.945097] SLOW spr round 67 (radius: 15)
[01:00:49 -2410.945097] SLOW spr round 68 (radius: 20)
[01:01:00 -2409.108835] SLOW spr round 69 (radius: 5)
[01:01:08 -2408.010768] SLOW spr round 70 (radius: 5)
[01:01:15 -2408.010505] SLOW spr round 71 (radius: 10)
[01:01:22 -2408.010498] SLOW spr round 72 (radius: 15)
[01:01:31 -2408.010498] SLOW spr round 73 (radius: 20)
[01:01:42 -2408.010498] SLOW spr round 74 (radius: 25)
[01:01:56 -2305.103941] SLOW spr round 75 (radius: 5)
[01:02:04 -2254.282123] SLOW spr round 76 (radius: 5)
[01:02:11 -2238.292074] SLOW spr round 77 (radius: 5)
[01:02:18 -2238.292061] SLOW spr round 78 (radius: 10)
[01:02:25 -2221.317139] SLOW spr round 79 (radius: 5)
[01:02:32 -2198.448238] SLOW spr round 80 (radius: 5)
[01:02:39 -2198.448219] SLOW spr round 81 (radius: 10)
[01:02:46 -2196.987682] SLOW spr round 82 (radius: 5)
[01:02:53 -2196.987668] SLOW spr round 83 (radius: 10)
[01:03:00 -2196.987668] SLOW spr round 84 (radius: 15)
[01:03:08 -2193.531897] SLOW spr round 85 (radius: 5)
[01:03:16 -2193.273901] SLOW spr round 86 (radius: 5)
[01:03:23 -2193.273901] SLOW spr round 87 (radius: 10)
[01:03:30 -2193.273901] SLOW spr round 88 (radius: 15)
[01:03:38 -2193.273901] SLOW spr round 89 (radius: 20)
[01:03:49 -2190.367533] SLOW spr round 90 (radius: 5)
[01:03:57 -2189.146698] SLOW spr round 91 (radius: 5)
[01:04:04 -2189.146175] SLOW spr round 92 (radius: 10)
[01:04:11 -2186.768853] SLOW spr round 93 (radius: 5)
[01:04:18 -2186.768835] SLOW spr round 94 (radius: 10)
[01:04:25 -2186.768832] SLOW spr round 95 (radius: 15)
[01:04:34 -2173.415151] SLOW spr round 96 (radius: 5)
[01:04:42 -2173.414964] SLOW spr round 97 (radius: 10)
[01:04:49 -2172.255816] SLOW spr round 98 (radius: 5)
[01:04:56 -2172.255814] SLOW spr round 99 (radius: 10)
[01:05:03 -2172.255813] SLOW spr round 100 (radius: 15)
[01:05:12 -2172.255813] SLOW spr round 101 (radius: 20)
[01:05:22 -2172.255813] SLOW spr round 102 (radius: 25)
[01:05:34 -2171.692752] SLOW spr round 103 (radius: 5)
[01:05:42 -2171.691526] SLOW spr round 104 (radius: 10)
[01:05:49 -2171.690989] SLOW spr round 105 (radius: 15)
[01:05:58 -2171.690748] SLOW spr round 106 (radius: 20)
[01:06:09 -2171.690640] SLOW spr round 107 (radius: 25)
[01:06:20 -2171.690591] Model parameter optimization (eps = 0.100000)

[01:06:22] ML tree search #6, logLikelihood: -2167.997118

[01:06:22 -6869.222795] Initial branch length optimization
[01:06:22 -5199.303747] Model parameter optimization (eps = 10.000000)
[01:06:27 -4963.067550] AUTODETECT spr round 1 (radius: 5)
[01:06:32 -4336.787422] AUTODETECT spr round 2 (radius: 10)
[01:06:38 -3712.079379] AUTODETECT spr round 3 (radius: 15)
[01:06:46 -3234.612377] AUTODETECT spr round 4 (radius: 20)
[01:06:55 -2862.064051] AUTODETECT spr round 5 (radius: 25)
[01:07:03 -2790.653758] SPR radius for FAST iterations: 25 (autodetect)
[01:07:03 -2790.653758] Model parameter optimization (eps = 3.000000)
[01:07:05 -2775.785859] FAST spr round 1 (radius: 25)
[01:07:12 -2529.999090] FAST spr round 2 (radius: 25)
[01:07:18 -2522.531271] FAST spr round 3 (radius: 25)
[01:07:24 -2521.178685] FAST spr round 4 (radius: 25)
[01:07:30 -2520.472714] FAST spr round 5 (radius: 25)
[01:07:36 -2520.472653] Model parameter optimization (eps = 1.000000)
[01:07:37 -2519.882870] SLOW spr round 1 (radius: 5)
[01:07:44 -2514.425651] SLOW spr round 2 (radius: 5)
[01:07:50 -2513.904750] SLOW spr round 3 (radius: 5)
[01:07:57 -2513.904703] SLOW spr round 4 (radius: 10)
[01:08:04 -2496.818265] SLOW spr round 5 (radius: 5)
[01:08:12 -2494.892683] SLOW spr round 6 (radius: 5)
[01:08:19 -2494.153141] SLOW spr round 7 (radius: 5)
[01:08:25 -2494.151168] SLOW spr round 8 (radius: 10)
[01:08:32 -2494.138258] SLOW spr round 9 (radius: 15)
[01:08:42 -2486.404918] SLOW spr round 10 (radius: 5)
[01:08:49 -2486.404813] SLOW spr round 11 (radius: 10)
[01:08:56 -2484.691902] SLOW spr round 12 (radius: 5)
[01:09:04 -2484.691725] SLOW spr round 13 (radius: 10)
[01:09:11 -2484.691705] SLOW spr round 14 (radius: 15)
[01:09:20 -2484.634914] SLOW spr round 15 (radius: 20)
[01:09:30 -2484.634905] SLOW spr round 16 (radius: 25)
[01:09:41 -2472.407705] SLOW spr round 17 (radius: 5)
[01:09:50 -2452.855400] SLOW spr round 18 (radius: 5)
[01:09:57 -2446.717243] SLOW spr round 19 (radius: 5)
[01:10:04 -2446.409373] SLOW spr round 20 (radius: 5)
[01:10:11 -2446.409357] SLOW spr round 21 (radius: 10)
[01:10:17 -2446.409349] SLOW spr round 22 (radius: 15)
[01:10:27 -2431.215123] SLOW spr round 23 (radius: 5)
[01:10:34 -2430.925703] SLOW spr round 24 (radius: 5)
[01:10:41 -2430.924468] SLOW spr round 25 (radius: 10)
[01:10:48 -2430.923903] SLOW spr round 26 (radius: 15)
[01:10:57 -2430.438776] SLOW spr round 27 (radius: 5)
[01:11:06 -2428.640419] SLOW spr round 28 (radius: 5)
[01:11:12 -2428.640258] SLOW spr round 29 (radius: 10)
[01:11:19 -2428.640240] SLOW spr round 30 (radius: 15)
[01:11:28 -2428.640227] SLOW spr round 31 (radius: 20)
[01:11:39 -2427.629583] SLOW spr round 32 (radius: 5)
[01:11:47 -2390.097620] SLOW spr round 33 (radius: 5)
[01:11:55 -2389.023328] SLOW spr round 34 (radius: 5)
[01:12:01 -2389.023313] SLOW spr round 35 (radius: 10)
[01:12:08 -2389.023306] SLOW spr round 36 (radius: 15)
[01:12:18 -2387.282415] SLOW spr round 37 (radius: 5)
[01:12:26 -2386.793782] SLOW spr round 38 (radius: 5)
[01:12:33 -2386.791690] SLOW spr round 39 (radius: 10)
[01:12:40 -2386.791679] SLOW spr round 40 (radius: 15)
[01:12:49 -2371.181648] SLOW spr round 41 (radius: 5)
[01:12:57 -2371.181630] SLOW spr round 42 (radius: 10)
[01:13:04 -2370.603207] SLOW spr round 43 (radius: 5)
[01:13:11 -2370.603200] SLOW spr round 44 (radius: 10)
[01:13:18 -2370.603194] SLOW spr round 45 (radius: 15)
[01:13:27 -2369.438388] SLOW spr round 46 (radius: 5)
[01:13:35 -2369.438381] SLOW spr round 47 (radius: 10)
[01:13:42 -2369.438375] SLOW spr round 48 (radius: 15)
[01:13:51 -2369.438368] SLOW spr round 49 (radius: 20)
[01:14:01 -2369.438362] SLOW spr round 50 (radius: 25)
[01:14:12 -2369.082262] SLOW spr round 51 (radius: 5)
[01:14:20 -2369.082254] SLOW spr round 52 (radius: 10)
[01:14:27 -2369.082248] SLOW spr round 53 (radius: 15)
[01:14:36 -2367.974855] SLOW spr round 54 (radius: 5)
[01:14:44 -2367.974849] SLOW spr round 55 (radius: 10)
[01:14:51 -2367.974842] SLOW spr round 56 (radius: 15)
[01:15:00 -2367.974836] SLOW spr round 57 (radius: 20)
[01:15:10 -2367.974830] SLOW spr round 58 (radius: 25)
[01:15:21 -2367.974824] Model parameter optimization (eps = 0.100000)

[01:15:23] ML tree search #7, logLikelihood: -2365.875826

[01:15:23 -6856.238220] Initial branch length optimization
[01:15:23 -5216.119257] Model parameter optimization (eps = 10.000000)
[01:15:26 -4991.162369] AUTODETECT spr round 1 (radius: 5)
[01:15:31 -4221.560287] AUTODETECT spr round 2 (radius: 10)
[01:15:37 -3675.739739] AUTODETECT spr round 3 (radius: 15)
[01:15:45 -3218.495130] AUTODETECT spr round 4 (radius: 20)
[01:15:52 -3031.184879] AUTODETECT spr round 5 (radius: 25)
[01:16:00 -2818.051621] SPR radius for FAST iterations: 25 (autodetect)
[01:16:00 -2818.051621] Model parameter optimization (eps = 3.000000)
[01:16:03 -2806.941441] FAST spr round 1 (radius: 25)
[01:16:09 -2603.694992] FAST spr round 2 (radius: 25)
[01:16:16 -2582.669886] FAST spr round 3 (radius: 25)
[01:16:22 -2580.979219] FAST spr round 4 (radius: 25)
[01:16:28 -2580.978646] Model parameter optimization (eps = 1.000000)
[01:16:30 -2579.938968] SLOW spr round 1 (radius: 5)
[01:16:37 -2577.606457] SLOW spr round 2 (radius: 5)
[01:16:44 -2577.322288] SLOW spr round 3 (radius: 5)
[01:16:51 -2577.321043] SLOW spr round 4 (radius: 10)
[01:16:58 -2575.906426] SLOW spr round 5 (radius: 5)
[01:17:05 -2575.906037] SLOW spr round 6 (radius: 10)
[01:17:12 -2572.420195] SLOW spr round 7 (radius: 5)
[01:17:19 -2572.419931] SLOW spr round 8 (radius: 10)
[01:17:26 -2571.950979] SLOW spr round 9 (radius: 5)
[01:17:34 -2571.950906] SLOW spr round 10 (radius: 10)
[01:17:40 -2571.950856] SLOW spr round 11 (radius: 15)
[01:17:49 -2555.237266] SLOW spr round 12 (radius: 5)
[01:17:57 -2554.829942] SLOW spr round 13 (radius: 5)
[01:18:04 -2554.829701] SLOW spr round 14 (radius: 10)
[01:18:11 -2554.829698] SLOW spr round 15 (radius: 15)
[01:18:19 -2553.756431] SLOW spr round 16 (radius: 5)
[01:18:27 -2553.756363] SLOW spr round 17 (radius: 10)
[01:18:34 -2553.577840] SLOW spr round 18 (radius: 5)
[01:18:41 -2553.577839] SLOW spr round 19 (radius: 10)
[01:18:48 -2553.577838] SLOW spr round 20 (radius: 15)
[01:18:56 -2553.577837] SLOW spr round 21 (radius: 20)
[01:19:06 -2539.704743] SLOW spr round 22 (radius: 5)
[01:19:14 -2539.703953] SLOW spr round 23 (radius: 10)
[01:19:21 -2539.199777] SLOW spr round 24 (radius: 5)
[01:19:28 -2539.199742] SLOW spr round 25 (radius: 10)
[01:19:35 -2539.199742] SLOW spr round 26 (radius: 15)
[01:19:44 -2538.970382] SLOW spr round 27 (radius: 5)
[01:19:51 -2538.970377] SLOW spr round 28 (radius: 10)
[01:19:58 -2538.970377] SLOW spr round 29 (radius: 15)
[01:20:07 -2538.970377] SLOW spr round 30 (radius: 20)
[01:20:16 -2538.970377] SLOW spr round 31 (radius: 25)
[01:20:27 -2493.349946] SLOW spr round 32 (radius: 5)
[01:20:35 -2483.410592] SLOW spr round 33 (radius: 5)
[01:20:42 -2483.410546] SLOW spr round 34 (radius: 10)
[01:20:49 -2482.999897] SLOW spr round 35 (radius: 5)
[01:20:56 -2482.999778] SLOW spr round 36 (radius: 10)
[01:21:03 -2482.999761] SLOW spr round 37 (radius: 15)
[01:21:12 -2480.928808] SLOW spr round 38 (radius: 5)
[01:21:20 -2480.928805] SLOW spr round 39 (radius: 10)
[01:21:27 -2480.928805] SLOW spr round 40 (radius: 15)
[01:21:35 -2480.928805] SLOW spr round 41 (radius: 20)
[01:21:45 -2479.722795] SLOW spr round 42 (radius: 5)
[01:21:53 -2479.722795] SLOW spr round 43 (radius: 10)
[01:22:00 -2479.722795] SLOW spr round 44 (radius: 15)
[01:22:09 -2479.722795] SLOW spr round 45 (radius: 20)
[01:22:19 -2479.722795] SLOW spr round 46 (radius: 25)
[01:22:30 -2467.077299] SLOW spr round 47 (radius: 5)
[01:22:38 -2460.861137] SLOW spr round 48 (radius: 5)
[01:22:45 -2460.861132] SLOW spr round 49 (radius: 10)
[01:22:52 -2460.727853] SLOW spr round 50 (radius: 5)
[01:22:59 -2460.727853] SLOW spr round 51 (radius: 10)
[01:23:06 -2460.727852] SLOW spr round 52 (radius: 15)
[01:23:15 -2460.309158] SLOW spr round 53 (radius: 5)
[01:23:22 -2460.309155] SLOW spr round 54 (radius: 10)
[01:23:29 -2460.309155] SLOW spr round 55 (radius: 15)
[01:23:38 -2460.309155] SLOW spr round 56 (radius: 20)
[01:23:48 -2460.309155] SLOW spr round 57 (radius: 25)
[01:23:58 -2459.281211] SLOW spr round 58 (radius: 5)
[01:24:07 -2449.686353] SLOW spr round 59 (radius: 5)
[01:24:14 -2449.683764] SLOW spr round 60 (radius: 10)
[01:24:20 -2449.683436] SLOW spr round 61 (radius: 15)
[01:24:29 -2449.683406] SLOW spr round 62 (radius: 20)
[01:24:40 -2435.512950] SLOW spr round 63 (radius: 5)
[01:24:48 -2434.760253] SLOW spr round 64 (radius: 5)
[01:24:55 -2432.475374] SLOW spr round 65 (radius: 5)
[01:25:02 -2432.474026] SLOW spr round 66 (radius: 10)
[01:25:09 -2431.011528] SLOW spr round 67 (radius: 5)
[01:25:16 -2430.954811] SLOW spr round 68 (radius: 10)
[01:25:23 -2430.954742] SLOW spr round 69 (radius: 15)
[01:25:31 -2430.954695] SLOW spr round 70 (radius: 20)
[01:25:41 -2428.667240] SLOW spr round 71 (radius: 5)
[01:25:49 -2428.667219] SLOW spr round 72 (radius: 10)
[01:25:56 -2428.667205] SLOW spr round 73 (radius: 15)
[01:26:04 -2428.667195] SLOW spr round 74 (radius: 20)
[01:26:14 -2428.667188] SLOW spr round 75 (radius: 25)
[01:26:27 -2406.429572] SLOW spr round 76 (radius: 5)
[01:26:35 -2405.634368] SLOW spr round 77 (radius: 5)
[01:26:42 -2405.634346] SLOW spr round 78 (radius: 10)
[01:26:48 -2405.634343] SLOW spr round 79 (radius: 15)
[01:26:57 -2405.634341] SLOW spr round 80 (radius: 20)
[01:27:06 -2405.634339] SLOW spr round 81 (radius: 25)
[01:27:17 -2405.634337] Model parameter optimization (eps = 0.100000)

[01:27:19] ML tree search #8, logLikelihood: -2404.117265

[01:27:19 -6829.761685] Initial branch length optimization
[01:27:19 -5186.274320] Model parameter optimization (eps = 10.000000)
[01:27:22 -4971.030132] AUTODETECT spr round 1 (radius: 5)
[01:27:28 -4175.234720] AUTODETECT spr round 2 (radius: 10)
[01:27:34 -3756.081979] AUTODETECT spr round 3 (radius: 15)
[01:27:42 -3149.297097] AUTODETECT spr round 4 (radius: 20)
[01:27:50 -2842.321307] AUTODETECT spr round 5 (radius: 25)
[01:27:57 -2725.863734] SPR radius for FAST iterations: 25 (autodetect)
[01:27:58 -2725.863734] Model parameter optimization (eps = 3.000000)
[01:28:00 -2710.546469] FAST spr round 1 (radius: 25)
[01:28:07 -2443.879145] FAST spr round 2 (radius: 25)
[01:28:13 -2427.604713] FAST spr round 3 (radius: 25)
[01:28:19 -2427.604448] Model parameter optimization (eps = 1.000000)
[01:28:20 -2427.461516] SLOW spr round 1 (radius: 5)
[01:28:27 -2426.155477] SLOW spr round 2 (radius: 5)
[01:28:34 -2425.700740] SLOW spr round 3 (radius: 5)
[01:28:40 -2425.700484] SLOW spr round 4 (radius: 10)
[01:28:47 -2403.042040] SLOW spr round 5 (radius: 5)
[01:28:55 -2398.418568] SLOW spr round 6 (radius: 5)
[01:29:02 -2397.745579] SLOW spr round 7 (radius: 5)
[01:29:09 -2397.738461] SLOW spr round 8 (radius: 10)
[01:29:16 -2388.670733] SLOW spr round 9 (radius: 5)
[01:29:23 -2388.670701] SLOW spr round 10 (radius: 10)
[01:29:31 -2378.537158] SLOW spr round 11 (radius: 5)
[01:29:38 -2376.425637] SLOW spr round 12 (radius: 5)
[01:29:45 -2374.356274] SLOW spr round 13 (radius: 5)
[01:29:52 -2374.170586] SLOW spr round 14 (radius: 5)
[01:29:59 -2374.169872] SLOW spr round 15 (radius: 10)
[01:30:06 -2374.169722] SLOW spr round 16 (radius: 15)
[01:30:14 -2356.196479] SLOW spr round 17 (radius: 5)
[01:30:23 -2354.795193] SLOW spr round 18 (radius: 5)
[01:30:30 -2349.176536] SLOW spr round 19 (radius: 5)
[01:30:37 -2348.741115] SLOW spr round 20 (radius: 5)
[01:30:43 -2348.741092] SLOW spr round 21 (radius: 10)
[01:30:50 -2348.126765] SLOW spr round 22 (radius: 5)
[01:30:58 -2348.126763] SLOW spr round 23 (radius: 10)
[01:31:05 -2348.126763] SLOW spr round 24 (radius: 15)
[01:31:13 -2346.466933] SLOW spr round 25 (radius: 5)
[01:31:21 -2345.117338] SLOW spr round 26 (radius: 5)
[01:31:28 -2345.116713] SLOW spr round 27 (radius: 10)
[01:31:35 -2345.116644] SLOW spr round 28 (radius: 15)
[01:31:44 -2335.416574] SLOW spr round 29 (radius: 5)
[01:31:52 -2333.016939] SLOW spr round 30 (radius: 5)
[01:31:59 -2333.016788] SLOW spr round 31 (radius: 10)
[01:32:06 -2333.016788] SLOW spr round 32 (radius: 15)
[01:32:15 -2333.016788] SLOW spr round 33 (radius: 20)
[01:32:25 -2332.187328] SLOW spr round 34 (radius: 5)
[01:32:33 -2331.996728] SLOW spr round 35 (radius: 5)
[01:32:40 -2331.996502] SLOW spr round 36 (radius: 10)
[01:32:47 -2331.996500] SLOW spr round 37 (radius: 15)
[01:32:56 -2331.996500] SLOW spr round 38 (radius: 20)
[01:33:06 -2331.996500] SLOW spr round 39 (radius: 25)
[01:33:17 -2329.179241] SLOW spr round 40 (radius: 5)
[01:33:26 -2329.179241] SLOW spr round 41 (radius: 10)
[01:33:33 -2329.179241] SLOW spr round 42 (radius: 15)
[01:33:42 -2327.593897] SLOW spr round 43 (radius: 5)
[01:33:50 -2326.941073] SLOW spr round 44 (radius: 5)
[01:33:57 -2326.941050] SLOW spr round 45 (radius: 10)
[01:34:03 -2326.941050] SLOW spr round 46 (radius: 15)
[01:34:12 -2326.601792] SLOW spr round 47 (radius: 5)
[01:34:20 -2326.601789] SLOW spr round 48 (radius: 10)
[01:34:27 -2326.601788] SLOW spr round 49 (radius: 15)
[01:34:35 -2326.601788] SLOW spr round 50 (radius: 20)
[01:34:46 -2326.601788] SLOW spr round 51 (radius: 25)
[01:34:57 -2326.601788] Model parameter optimization (eps = 0.100000)

[01:34:59] ML tree search #9, logLikelihood: -2325.984912

[01:34:59 -6989.043642] Initial branch length optimization
[01:34:59 -5234.399242] Model parameter optimization (eps = 10.000000)
[01:35:02 -5022.097502] AUTODETECT spr round 1 (radius: 5)
[01:35:08 -4257.988666] AUTODETECT spr round 2 (radius: 10)
[01:35:14 -3569.536865] AUTODETECT spr round 3 (radius: 15)
[01:35:22 -3173.969514] AUTODETECT spr round 4 (radius: 20)
[01:35:30 -2882.758431] AUTODETECT spr round 5 (radius: 25)
[01:35:38 -2726.774478] SPR radius for FAST iterations: 25 (autodetect)
[01:35:38 -2726.774478] Model parameter optimization (eps = 3.000000)
[01:35:41 -2716.669799] FAST spr round 1 (radius: 25)
[01:35:48 -2501.786978] FAST spr round 2 (radius: 25)
[01:35:54 -2486.881881] FAST spr round 3 (radius: 25)
[01:36:00 -2485.631172] FAST spr round 4 (radius: 25)
[01:36:06 -2484.668821] FAST spr round 5 (radius: 25)
[01:36:12 -2484.668774] Model parameter optimization (eps = 1.000000)
[01:36:14 -2482.585195] SLOW spr round 1 (radius: 5)
[01:36:21 -2481.714018] SLOW spr round 2 (radius: 5)
[01:36:27 -2481.713990] SLOW spr round 3 (radius: 10)
[01:36:34 -2467.979949] SLOW spr round 4 (radius: 5)
[01:36:42 -2467.386097] SLOW spr round 5 (radius: 5)
[01:36:49 -2467.386093] SLOW spr round 6 (radius: 10)
[01:36:55 -2467.386093] SLOW spr round 7 (radius: 15)
[01:37:05 -2447.910726] SLOW spr round 8 (radius: 5)
[01:37:13 -2437.271491] SLOW spr round 9 (radius: 5)
[01:37:20 -2431.112805] SLOW spr round 10 (radius: 5)
[01:37:27 -2431.112793] SLOW spr round 11 (radius: 10)
[01:37:33 -2431.112793] SLOW spr round 12 (radius: 15)
[01:37:42 -2427.324525] SLOW spr round 13 (radius: 5)
[01:37:50 -2427.261687] SLOW spr round 14 (radius: 10)
[01:37:57 -2426.643078] SLOW spr round 15 (radius: 5)
[01:38:05 -2426.643075] SLOW spr round 16 (radius: 10)
[01:38:12 -2426.643075] SLOW spr round 17 (radius: 15)
[01:38:20 -2426.643075] SLOW spr round 18 (radius: 20)
[01:38:30 -2423.534969] SLOW spr round 19 (radius: 5)
[01:38:38 -2422.923254] SLOW spr round 20 (radius: 5)
[01:38:46 -2422.921935] SLOW spr round 21 (radius: 10)
[01:38:52 -2422.921791] SLOW spr round 22 (radius: 15)
[01:39:01 -2420.582731] SLOW spr round 23 (radius: 5)
[01:39:09 -2419.956334] SLOW spr round 24 (radius: 5)
[01:39:16 -2419.955322] SLOW spr round 25 (radius: 10)
[01:39:23 -2419.740262] SLOW spr round 26 (radius: 5)
[01:39:30 -2419.740259] SLOW spr round 27 (radius: 10)
[01:39:37 -2419.740259] SLOW spr round 28 (radius: 15)
[01:39:46 -2419.616587] SLOW spr round 29 (radius: 5)
[01:39:54 -2419.501391] SLOW spr round 30 (radius: 5)
[01:40:01 -2419.501387] SLOW spr round 31 (radius: 10)
[01:40:08 -2419.501387] SLOW spr round 32 (radius: 15)
[01:40:16 -2419.501387] SLOW spr round 33 (radius: 20)
[01:40:26 -2400.911276] SLOW spr round 34 (radius: 5)
[01:40:35 -2362.532983] SLOW spr round 35 (radius: 5)
[01:40:42 -2362.280796] SLOW spr round 36 (radius: 5)
[01:40:49 -2362.049105] SLOW spr round 37 (radius: 5)
[01:40:55 -2362.048802] SLOW spr round 38 (radius: 10)
[01:41:02 -2362.048797] SLOW spr round 39 (radius: 15)
[01:41:11 -2362.048797] SLOW spr round 40 (radius: 20)
[01:41:21 -2361.946136] SLOW spr round 41 (radius: 5)
[01:41:29 -2361.945200] SLOW spr round 42 (radius: 10)
[01:41:36 -2361.945146] SLOW spr round 43 (radius: 15)
[01:41:45 -2361.945134] SLOW spr round 44 (radius: 20)
[01:41:54 -2361.945129] SLOW spr round 45 (radius: 25)
[01:42:05 -2352.078349] SLOW spr round 46 (radius: 5)
[01:42:13 -2340.688148] SLOW spr round 47 (radius: 5)
[01:42:20 -2340.686393] SLOW spr round 48 (radius: 10)
[01:42:27 -2338.051906] SLOW spr round 49 (radius: 5)
[01:42:35 -2327.258109] SLOW spr round 50 (radius: 5)
[01:42:42 -2327.243291] SLOW spr round 51 (radius: 10)
[01:42:49 -2327.243081] SLOW spr round 52 (radius: 15)
[01:42:58 -2324.577419] SLOW spr round 53 (radius: 5)
[01:43:06 -2324.577348] SLOW spr round 54 (radius: 10)
[01:43:14 -2323.862665] SLOW spr round 55 (radius: 5)
[01:43:21 -2323.862661] SLOW spr round 56 (radius: 10)
[01:43:28 -2323.862661] SLOW spr round 57 (radius: 15)
[01:43:37 -2323.862661] SLOW spr round 58 (radius: 20)
[01:43:48 -2322.084450] SLOW spr round 59 (radius: 5)
[01:43:56 -2321.635825] SLOW spr round 60 (radius: 5)
[01:44:03 -2321.635817] SLOW spr round 61 (radius: 10)
[01:44:10 -2321.635816] SLOW spr round 62 (radius: 15)
[01:44:20 -2293.902573] SLOW spr round 63 (radius: 5)
[01:44:28 -2293.795737] SLOW spr round 64 (radius: 5)
[01:44:35 -2293.795721] SLOW spr round 65 (radius: 10)
[01:44:42 -2293.795721] SLOW spr round 66 (radius: 15)
[01:44:51 -2293.468169] SLOW spr round 67 (radius: 5)
[01:44:59 -2293.458511] SLOW spr round 68 (radius: 10)
[01:45:06 -2293.458506] SLOW spr round 69 (radius: 15)
[01:45:15 -2293.458506] SLOW spr round 70 (radius: 20)
[01:45:26 -2289.885446] SLOW spr round 71 (radius: 5)
[01:45:34 -2288.575887] SLOW spr round 72 (radius: 5)
[01:45:41 -2288.575701] SLOW spr round 73 (radius: 10)
[01:45:48 -2287.986048] SLOW spr round 74 (radius: 5)
[01:45:55 -2287.986045] SLOW spr round 75 (radius: 10)
[01:46:02 -2287.986045] SLOW spr round 76 (radius: 15)
[01:46:11 -2287.986045] SLOW spr round 77 (radius: 20)
[01:46:21 -2287.986045] SLOW spr round 78 (radius: 25)
[01:46:32 -2287.986045] Model parameter optimization (eps = 0.100000)

[01:46:34] ML tree search #10, logLikelihood: -2286.447408

[01:46:34 -6873.776521] Initial branch length optimization
[01:46:34 -5232.796125] Model parameter optimization (eps = 10.000000)
[01:46:37 -5013.516255] AUTODETECT spr round 1 (radius: 5)
[01:46:42 -4281.973909] AUTODETECT spr round 2 (radius: 10)
[01:46:49 -3573.886510] AUTODETECT spr round 3 (radius: 15)
[01:46:56 -3285.927880] AUTODETECT spr round 4 (radius: 20)
[01:47:04 -3042.311957] AUTODETECT spr round 5 (radius: 25)
[01:47:12 -2910.257741] SPR radius for FAST iterations: 25 (autodetect)
[01:47:12 -2910.257741] Model parameter optimization (eps = 3.000000)
[01:47:14 -2903.106788] FAST spr round 1 (radius: 25)
[01:47:21 -2556.174063] FAST spr round 2 (radius: 25)
[01:47:27 -2508.555062] FAST spr round 3 (radius: 25)
[01:47:33 -2505.013187] FAST spr round 4 (radius: 25)
[01:47:40 -2504.072457] FAST spr round 5 (radius: 25)
[01:47:45 -2504.072180] Model parameter optimization (eps = 1.000000)
[01:47:47 -2502.731196] SLOW spr round 1 (radius: 5)
[01:47:54 -2501.871701] SLOW spr round 2 (radius: 5)
[01:48:00 -2501.871165] SLOW spr round 3 (radius: 10)
[01:48:07 -2495.211373] SLOW spr round 4 (radius: 5)
[01:48:15 -2495.174618] SLOW spr round 5 (radius: 10)
[01:48:22 -2492.864675] SLOW spr round 6 (radius: 5)
[01:48:29 -2492.864379] SLOW spr round 7 (radius: 10)
[01:48:36 -2492.864227] SLOW spr round 8 (radius: 15)
[01:48:45 -2471.332118] SLOW spr round 9 (radius: 5)
[01:48:53 -2471.331159] SLOW spr round 10 (radius: 10)
[01:49:00 -2471.096708] SLOW spr round 11 (radius: 5)
[01:49:07 -2471.096701] SLOW spr round 12 (radius: 10)
[01:49:14 -2471.096697] SLOW spr round 13 (radius: 15)
[01:49:23 -2471.096694] SLOW spr round 14 (radius: 20)
[01:49:34 -2458.874225] SLOW spr round 15 (radius: 5)
[01:49:42 -2428.297695] SLOW spr round 16 (radius: 5)
[01:49:50 -2426.287320] SLOW spr round 17 (radius: 5)
[01:49:56 -2426.287061] SLOW spr round 18 (radius: 10)
[01:50:03 -2426.286899] SLOW spr round 19 (radius: 15)
[01:50:12 -2418.000586] SLOW spr round 20 (radius: 5)
[01:50:19 -2418.000519] SLOW spr round 21 (radius: 10)
[01:50:26 -2418.000475] SLOW spr round 22 (radius: 15)
[01:50:35 -2418.000446] SLOW spr round 23 (radius: 20)
[01:50:45 -2417.488614] SLOW spr round 24 (radius: 5)
[01:50:53 -2417.157221] SLOW spr round 25 (radius: 5)
[01:51:00 -2417.157201] SLOW spr round 26 (radius: 10)
[01:51:07 -2417.157198] SLOW spr round 27 (radius: 15)
[01:51:15 -2417.157198] SLOW spr round 28 (radius: 20)
[01:51:26 -2417.157198] SLOW spr round 29 (radius: 25)
[01:51:37 -2404.141707] SLOW spr round 30 (radius: 5)
[01:51:46 -2401.146375] SLOW spr round 31 (radius: 5)
[01:51:53 -2401.145729] SLOW spr round 32 (radius: 10)
[01:52:00 -2401.145712] SLOW spr round 33 (radius: 15)
[01:52:08 -2401.145711] SLOW spr round 34 (radius: 20)
[01:52:19 -2401.145711] SLOW spr round 35 (radius: 25)
[01:52:30 -2368.048597] SLOW spr round 36 (radius: 5)
[01:52:38 -2367.380514] SLOW spr round 37 (radius: 5)
[01:52:45 -2367.380010] SLOW spr round 38 (radius: 10)
[01:52:52 -2367.379974] SLOW spr round 39 (radius: 15)
[01:53:01 -2367.379972] SLOW spr round 40 (radius: 20)
[01:53:11 -2367.379972] SLOW spr round 41 (radius: 25)
[01:53:22 -2367.379972] Model parameter optimization (eps = 0.100000)

[01:53:24] ML tree search #11, logLikelihood: -2364.348555

[01:53:24 -6873.384878] Initial branch length optimization
[01:53:24 -5224.884558] Model parameter optimization (eps = 10.000000)
[01:53:28 -4984.880535] AUTODETECT spr round 1 (radius: 5)
[01:53:34 -4193.246229] AUTODETECT spr round 2 (radius: 10)
[01:53:40 -3645.032121] AUTODETECT spr round 3 (radius: 15)
[01:53:47 -3228.615099] AUTODETECT spr round 4 (radius: 20)
[01:53:55 -2971.303246] AUTODETECT spr round 5 (radius: 25)
[01:54:03 -2864.490846] SPR radius for FAST iterations: 25 (autodetect)
[01:54:03 -2864.490846] Model parameter optimization (eps = 3.000000)
[01:54:07 -2850.008925] FAST spr round 1 (radius: 25)
[01:54:14 -2644.313837] FAST spr round 2 (radius: 25)
[01:54:21 -2584.891536] FAST spr round 3 (radius: 25)
[01:54:27 -2583.019831] FAST spr round 4 (radius: 25)
[01:54:33 -2582.806929] FAST spr round 5 (radius: 25)
[01:54:39 -2581.243603] FAST spr round 6 (radius: 25)
[01:54:45 -2581.242137] Model parameter optimization (eps = 1.000000)
[01:54:46 -2580.370236] SLOW spr round 1 (radius: 5)
[01:54:53 -2577.301916] SLOW spr round 2 (radius: 5)
[01:54:59 -2576.536152] SLOW spr round 3 (radius: 5)
[01:55:06 -2576.535801] SLOW spr round 4 (radius: 10)
[01:55:13 -2546.620840] SLOW spr round 5 (radius: 5)
[01:55:21 -2542.072011] SLOW spr round 6 (radius: 5)
[01:55:28 -2542.071998] SLOW spr round 7 (radius: 10)
[01:55:35 -2542.071997] SLOW spr round 8 (radius: 15)
[01:55:43 -2536.620896] SLOW spr round 9 (radius: 5)
[01:55:51 -2536.594297] SLOW spr round 10 (radius: 10)
[01:55:59 -2536.531443] SLOW spr round 11 (radius: 15)
[01:56:07 -2536.443107] SLOW spr round 12 (radius: 20)
[01:56:17 -2528.261208] SLOW spr round 13 (radius: 5)
[01:56:25 -2528.128349] SLOW spr round 14 (radius: 5)
[01:56:32 -2528.127152] SLOW spr round 15 (radius: 10)
[01:56:39 -2528.127042] SLOW spr round 16 (radius: 15)
[01:56:47 -2528.127029] SLOW spr round 17 (radius: 20)
[01:56:56 -2528.127024] SLOW spr round 18 (radius: 25)
[01:57:05 -2527.739671] SLOW spr round 19 (radius: 5)
[01:57:14 -2527.736699] SLOW spr round 20 (radius: 10)
[01:57:21 -2527.736694] SLOW spr round 21 (radius: 15)
[01:57:29 -2527.736694] SLOW spr round 22 (radius: 20)
[01:57:38 -2527.736693] SLOW spr round 23 (radius: 25)
[01:57:47 -2527.736693] Model parameter optimization (eps = 0.100000)

[01:57:49] ML tree search #12, logLikelihood: -2526.285928

[01:57:49 -6879.934385] Initial branch length optimization
[01:57:50 -5224.621370] Model parameter optimization (eps = 10.000000)
[01:57:53 -5006.741385] AUTODETECT spr round 1 (radius: 5)
[01:57:58 -4219.676863] AUTODETECT spr round 2 (radius: 10)
[01:58:05 -3653.246901] AUTODETECT spr round 3 (radius: 15)
[01:58:12 -3393.736354] AUTODETECT spr round 4 (radius: 20)
[01:58:20 -3050.803632] AUTODETECT spr round 5 (radius: 25)
[01:58:28 -2929.101603] SPR radius for FAST iterations: 25 (autodetect)
[01:58:28 -2929.101603] Model parameter optimization (eps = 3.000000)
[01:58:30 -2920.554323] FAST spr round 1 (radius: 25)
[01:58:37 -2661.405934] FAST spr round 2 (radius: 25)
[01:58:43 -2643.629032] FAST spr round 3 (radius: 25)
[01:58:49 -2641.203296] FAST spr round 4 (radius: 25)
[01:58:55 -2641.203258] Model parameter optimization (eps = 1.000000)
[01:58:57 -2638.422178] SLOW spr round 1 (radius: 5)
[01:59:04 -2636.543334] SLOW spr round 2 (radius: 5)
[01:59:10 -2634.506234] SLOW spr round 3 (radius: 5)
[01:59:17 -2634.506115] SLOW spr round 4 (radius: 10)
[01:59:24 -2634.100577] SLOW spr round 5 (radius: 5)
[01:59:31 -2633.554284] SLOW spr round 6 (radius: 5)
[01:59:38 -2633.554120] SLOW spr round 7 (radius: 10)
[01:59:45 -2633.554118] SLOW spr round 8 (radius: 15)
[01:59:54 -2605.329646] SLOW spr round 9 (radius: 5)
[02:00:03 -2565.739861] SLOW spr round 10 (radius: 5)
[02:00:10 -2564.621616] SLOW spr round 11 (radius: 5)
[02:00:16 -2564.620822] SLOW spr round 12 (radius: 10)
[02:00:23 -2563.722685] SLOW spr round 13 (radius: 5)
[02:00:31 -2563.722683] SLOW spr round 14 (radius: 10)
[02:00:38 -2563.722682] SLOW spr round 15 (radius: 15)
[02:00:46 -2563.722682] SLOW spr round 16 (radius: 20)
[02:00:56 -2548.614323] SLOW spr round 17 (radius: 5)
[02:01:04 -2545.584431] SLOW spr round 18 (radius: 5)
[02:01:11 -2545.314122] SLOW spr round 19 (radius: 5)
[02:01:18 -2545.314001] SLOW spr round 20 (radius: 10)
[02:01:25 -2545.313997] SLOW spr round 21 (radius: 15)
[02:01:33 -2545.313997] SLOW spr round 22 (radius: 20)
[02:01:44 -2545.313997] SLOW spr round 23 (radius: 25)
[02:01:55 -2507.026485] SLOW spr round 24 (radius: 5)
[02:02:03 -2501.668046] SLOW spr round 25 (radius: 5)
[02:02:11 -2501.667719] SLOW spr round 26 (radius: 10)
[02:02:17 -2501.667689] SLOW spr round 27 (radius: 15)
[02:02:26 -2500.693736] SLOW spr round 28 (radius: 5)
[02:02:34 -2500.693736] SLOW spr round 29 (radius: 10)
[02:02:41 -2500.693735] SLOW spr round 30 (radius: 15)
[02:02:49 -2500.693735] SLOW spr round 31 (radius: 20)
[02:02:59 -2500.693735] SLOW spr round 32 (radius: 25)
[02:03:10 -2496.638884] SLOW spr round 33 (radius: 5)
[02:03:19 -2496.638688] SLOW spr round 34 (radius: 10)
[02:03:26 -2496.638685] SLOW spr round 35 (radius: 15)
[02:03:34 -2496.638684] SLOW spr round 36 (radius: 20)
[02:03:44 -2496.638684] SLOW spr round 37 (radius: 25)
[02:03:54 -2496.638684] Model parameter optimization (eps = 0.100000)

[02:03:56] ML tree search #13, logLikelihood: -2494.462238

[02:03:56 -6864.853729] Initial branch length optimization
[02:03:56 -5205.338267] Model parameter optimization (eps = 10.000000)
[02:04:00 -4981.131433] AUTODETECT spr round 1 (radius: 5)
[02:04:05 -4241.942062] AUTODETECT spr round 2 (radius: 10)
[02:04:12 -3654.499030] AUTODETECT spr round 3 (radius: 15)
[02:04:19 -3263.700137] AUTODETECT spr round 4 (radius: 20)
[02:04:26 -3032.985748] AUTODETECT spr round 5 (radius: 25)
[02:04:34 -2884.867712] SPR radius for FAST iterations: 25 (autodetect)
[02:04:34 -2884.867712] Model parameter optimization (eps = 3.000000)
[02:04:37 -2869.438661] FAST spr round 1 (radius: 25)
[02:04:44 -2497.154487] FAST spr round 2 (radius: 25)
[02:04:50 -2481.223417] FAST spr round 3 (radius: 25)
[02:04:56 -2481.196584] Model parameter optimization (eps = 1.000000)
[02:04:59 -2479.819835] SLOW spr round 1 (radius: 5)
[02:05:06 -2474.263517] SLOW spr round 2 (radius: 5)
[02:05:12 -2473.577741] SLOW spr round 3 (radius: 5)
[02:05:19 -2472.638324] SLOW spr round 4 (radius: 5)
[02:05:25 -2471.885818] SLOW spr round 5 (radius: 5)
[02:05:32 -2471.582633] SLOW spr round 6 (radius: 5)
[02:05:39 -2471.582340] SLOW spr round 7 (radius: 10)
[02:05:45 -2470.903119] SLOW spr round 8 (radius: 5)
[02:05:53 -2470.903087] SLOW spr round 9 (radius: 10)
[02:06:00 -2466.117897] SLOW spr round 10 (radius: 5)
[02:06:07 -2465.854782] SLOW spr round 11 (radius: 5)
[02:06:14 -2465.854773] SLOW spr round 12 (radius: 10)
[02:06:21 -2465.854772] SLOW spr round 13 (radius: 15)
[02:06:29 -2456.343009] SLOW spr round 14 (radius: 5)
[02:06:38 -2449.639432] SLOW spr round 15 (radius: 5)
[02:06:45 -2447.533403] SLOW spr round 16 (radius: 5)
[02:06:52 -2447.422340] SLOW spr round 17 (radius: 5)
[02:06:58 -2447.422310] SLOW spr round 18 (radius: 10)
[02:07:05 -2447.072148] SLOW spr round 19 (radius: 5)
[02:07:12 -2447.070063] SLOW spr round 20 (radius: 10)
[02:07:19 -2445.086434] SLOW spr round 21 (radius: 5)
[02:07:26 -2445.043501] SLOW spr round 22 (radius: 10)
[02:07:33 -2445.043265] SLOW spr round 23 (radius: 15)
[02:07:42 -2438.781571] SLOW spr round 24 (radius: 5)
[02:07:50 -2438.780678] SLOW spr round 25 (radius: 10)
[02:07:56 -2438.780417] SLOW spr round 26 (radius: 15)
[02:08:05 -2438.780284] SLOW spr round 27 (radius: 20)
[02:08:15 -2433.783089] SLOW spr round 28 (radius: 5)
[02:08:23 -2432.718324] SLOW spr round 29 (radius: 5)
[02:08:30 -2432.715293] SLOW spr round 30 (radius: 10)
[02:08:37 -2432.713997] SLOW spr round 31 (radius: 15)
[02:08:45 -2431.504750] SLOW spr round 32 (radius: 5)
[02:08:53 -2431.503025] SLOW spr round 33 (radius: 10)
[02:09:00 -2431.502553] SLOW spr round 34 (radius: 15)
[02:09:08 -2431.502321] SLOW spr round 35 (radius: 20)
[02:09:18 -2426.988018] SLOW spr round 36 (radius: 5)
[02:09:26 -2424.622229] SLOW spr round 37 (radius: 5)
[02:09:33 -2424.622196] SLOW spr round 38 (radius: 10)
[02:09:39 -2424.622177] SLOW spr round 39 (radius: 15)
[02:09:48 -2424.622166] SLOW spr round 40 (radius: 20)
[02:09:57 -2424.622160] SLOW spr round 41 (radius: 25)
[02:10:08 -2420.561907] SLOW spr round 42 (radius: 5)
[02:10:16 -2420.537256] SLOW spr round 43 (radius: 10)
[02:10:23 -2420.028989] SLOW spr round 44 (radius: 5)
[02:10:30 -2420.028557] SLOW spr round 45 (radius: 10)
[02:10:37 -2420.028549] SLOW spr round 46 (radius: 15)
[02:10:45 -2404.477333] SLOW spr round 47 (radius: 5)
[02:10:53 -2403.173236] SLOW spr round 48 (radius: 5)
[02:11:00 -2403.111360] SLOW spr round 49 (radius: 10)
[02:11:07 -2400.235136] SLOW spr round 50 (radius: 5)
[02:11:14 -2400.234682] SLOW spr round 51 (radius: 10)
[02:11:21 -2400.234647] SLOW spr round 52 (radius: 15)
[02:11:29 -2395.116939] SLOW spr round 53 (radius: 5)
[02:11:37 -2374.261180] SLOW spr round 54 (radius: 5)
[02:11:44 -2373.294965] SLOW spr round 55 (radius: 5)
[02:11:51 -2373.294935] SLOW spr round 56 (radius: 10)
[02:11:57 -2373.294931] SLOW spr round 57 (radius: 15)
[02:12:05 -2373.294931] SLOW spr round 58 (radius: 20)
[02:12:15 -2341.922835] SLOW spr round 59 (radius: 5)
[02:12:23 -2340.571535] SLOW spr round 60 (radius: 5)
[02:12:30 -2340.571457] SLOW spr round 61 (radius: 10)
[02:12:37 -2340.571456] SLOW spr round 62 (radius: 15)
[02:12:45 -2340.571456] SLOW spr round 63 (radius: 20)
[02:12:53 -2340.571456] SLOW spr round 64 (radius: 25)
[02:13:03 -2332.034135] SLOW spr round 65 (radius: 5)
[02:13:11 -2331.977909] SLOW spr round 66 (radius: 10)
[02:13:18 -2331.977885] SLOW spr round 67 (radius: 15)
[02:13:26 -2331.733813] SLOW spr round 68 (radius: 5)
[02:13:34 -2331.733726] SLOW spr round 69 (radius: 10)
[02:13:41 -2331.733720] SLOW spr round 70 (radius: 15)
[02:13:48 -2331.733719] SLOW spr round 71 (radius: 20)
[02:13:57 -2331.733718] SLOW spr round 72 (radius: 25)
[02:14:07 -2331.645764] Model parameter optimization (eps = 0.100000)

[02:14:08] ML tree search #14, logLikelihood: -2328.633277

[02:14:09 -6883.000282] Initial branch length optimization
[02:14:09 -5229.819304] Model parameter optimization (eps = 10.000000)
[02:14:12 -4997.780253] AUTODETECT spr round 1 (radius: 5)
[02:14:17 -4185.702193] AUTODETECT spr round 2 (radius: 10)
[02:14:23 -3719.682223] AUTODETECT spr round 3 (radius: 15)
[02:14:31 -3360.966899] AUTODETECT spr round 4 (radius: 20)
[02:14:39 -3077.477008] AUTODETECT spr round 5 (radius: 25)
[02:14:47 -2847.456644] SPR radius for FAST iterations: 25 (autodetect)
[02:14:47 -2847.456644] Model parameter optimization (eps = 3.000000)
[02:14:49 -2831.407030] FAST spr round 1 (radius: 25)
[02:14:56 -2434.160963] FAST spr round 2 (radius: 25)
[02:15:02 -2416.944390] FAST spr round 3 (radius: 25)
[02:15:08 -2416.903869] Model parameter optimization (eps = 1.000000)
[02:15:09 -2416.358816] SLOW spr round 1 (radius: 5)
[02:15:16 -2414.451697] SLOW spr round 2 (radius: 5)
[02:15:23 -2411.970282] SLOW spr round 3 (radius: 5)
[02:15:30 -2410.400909] SLOW spr round 4 (radius: 5)
[02:15:36 -2409.216122] SLOW spr round 5 (radius: 5)
[02:15:42 -2409.216122] SLOW spr round 6 (radius: 10)
[02:15:49 -2406.988642] SLOW spr round 7 (radius: 5)
[02:15:57 -2405.671698] SLOW spr round 8 (radius: 5)
[02:16:04 -2405.250894] SLOW spr round 9 (radius: 5)
[02:16:10 -2405.249956] SLOW spr round 10 (radius: 10)
[02:16:17 -2405.249895] SLOW spr round 11 (radius: 15)
[02:16:26 -2382.702002] SLOW spr round 12 (radius: 5)
[02:16:34 -2380.980746] SLOW spr round 13 (radius: 5)
[02:16:40 -2380.980407] SLOW spr round 14 (radius: 10)
[02:16:47 -2380.980394] SLOW spr round 15 (radius: 15)
[02:16:56 -2375.913248] SLOW spr round 16 (radius: 5)
[02:17:04 -2372.848335] SLOW spr round 17 (radius: 5)
[02:17:10 -2372.848315] SLOW spr round 18 (radius: 10)
[02:17:17 -2372.848315] SLOW spr round 19 (radius: 15)
[02:17:26 -2371.438266] SLOW spr round 20 (radius: 5)
[02:17:34 -2371.438266] SLOW spr round 21 (radius: 10)
[02:17:41 -2369.693913] SLOW spr round 22 (radius: 5)
[02:17:48 -2369.069091] SLOW spr round 23 (radius: 5)
[02:17:55 -2369.068816] SLOW spr round 24 (radius: 10)
[02:18:01 -2369.068813] SLOW spr round 25 (radius: 15)
[02:18:10 -2369.068813] SLOW spr round 26 (radius: 20)
[02:18:20 -2364.024937] SLOW spr round 27 (radius: 5)
[02:18:28 -2359.888899] SLOW spr round 28 (radius: 5)
[02:18:35 -2359.881762] SLOW spr round 29 (radius: 10)
[02:18:42 -2359.881164] SLOW spr round 30 (radius: 15)
[02:18:51 -2351.986985] SLOW spr round 31 (radius: 5)
[02:18:59 -2351.955986] SLOW spr round 32 (radius: 10)
[02:19:06 -2351.955974] SLOW spr round 33 (radius: 15)
[02:19:15 -2351.955974] SLOW spr round 34 (radius: 20)
[02:19:25 -2351.955974] SLOW spr round 35 (radius: 25)
[02:19:36 -2318.507734] SLOW spr round 36 (radius: 5)
[02:19:44 -2317.264185] SLOW spr round 37 (radius: 5)
[02:19:52 -2317.263753] SLOW spr round 38 (radius: 10)
[02:19:58 -2317.263734] SLOW spr round 39 (radius: 15)
[02:20:07 -2317.263733] SLOW spr round 40 (radius: 20)
[02:20:17 -2317.263733] SLOW spr round 41 (radius: 25)
[02:20:28 -2317.263733] Model parameter optimization (eps = 0.100000)

[02:20:29] ML tree search #15, logLikelihood: -2314.062290

[02:20:29 -6938.595851] Initial branch length optimization
[02:20:29 -5239.472595] Model parameter optimization (eps = 10.000000)
[02:20:33 -5006.170212] AUTODETECT spr round 1 (radius: 5)
[02:20:38 -4215.992344] AUTODETECT spr round 2 (radius: 10)
[02:20:45 -3718.478762] AUTODETECT spr round 3 (radius: 15)
[02:20:51 -3404.851832] AUTODETECT spr round 4 (radius: 20)
[02:20:59 -3163.822061] AUTODETECT spr round 5 (radius: 25)
[02:21:07 -2925.143766] SPR radius for FAST iterations: 25 (autodetect)
[02:21:07 -2925.143766] Model parameter optimization (eps = 3.000000)
[02:21:09 -2917.525375] FAST spr round 1 (radius: 25)
[02:21:16 -2636.146806] FAST spr round 2 (radius: 25)
[02:21:23 -2607.902285] FAST spr round 3 (radius: 25)
[02:21:29 -2607.126207] FAST spr round 4 (radius: 25)
[02:21:35 -2607.126178] Model parameter optimization (eps = 1.000000)
[02:21:37 -2606.032615] SLOW spr round 1 (radius: 5)
[02:21:44 -2588.622663] SLOW spr round 2 (radius: 5)
[02:21:51 -2588.619861] SLOW spr round 3 (radius: 10)
[02:21:58 -2580.467703] SLOW spr round 4 (radius: 5)
[02:22:06 -2572.382519] SLOW spr round 5 (radius: 5)
[02:22:13 -2568.334285] SLOW spr round 6 (radius: 5)
[02:22:20 -2568.323167] SLOW spr round 7 (radius: 10)
[02:22:26 -2568.323137] SLOW spr round 8 (radius: 15)
[02:22:35 -2542.564698] SLOW spr round 9 (radius: 5)
[02:22:43 -2530.500345] SLOW spr round 10 (radius: 5)
[02:22:50 -2530.173895] SLOW spr round 11 (radius: 5)
[02:22:57 -2530.172533] SLOW spr round 12 (radius: 10)
[02:23:04 -2528.213029] SLOW spr round 13 (radius: 5)
[02:23:11 -2528.212956] SLOW spr round 14 (radius: 10)
[02:23:19 -2515.662310] SLOW spr round 15 (radius: 5)
[02:23:26 -2515.546788] SLOW spr round 16 (radius: 5)
[02:23:33 -2515.546698] SLOW spr round 17 (radius: 10)
[02:23:40 -2514.783802] SLOW spr round 18 (radius: 5)
[02:23:47 -2514.783687] SLOW spr round 19 (radius: 10)
[02:23:54 -2514.783672] SLOW spr round 20 (radius: 15)
[02:24:03 -2514.783670] SLOW spr round 21 (radius: 20)
[02:24:14 -2466.369273] SLOW spr round 22 (radius: 5)
[02:24:22 -2441.284332] SLOW spr round 23 (radius: 5)
[02:24:29 -2441.284301] SLOW spr round 24 (radius: 10)
[02:24:36 -2440.064260] SLOW spr round 25 (radius: 5)
[02:24:43 -2439.876387] SLOW spr round 26 (radius: 5)
[02:24:50 -2439.875988] SLOW spr round 27 (radius: 10)
[02:24:57 -2439.875822] SLOW spr round 28 (radius: 15)
[02:25:06 -2438.725744] SLOW spr round 29 (radius: 5)
[02:25:14 -2436.761540] SLOW spr round 30 (radius: 5)
[02:25:20 -2436.761520] SLOW spr round 31 (radius: 10)
[02:25:27 -2423.408970] SLOW spr round 32 (radius: 5)
[02:25:35 -2417.257690] SLOW spr round 33 (radius: 5)
[02:25:42 -2417.256092] SLOW spr round 34 (radius: 10)
[02:25:49 -2416.721927] SLOW spr round 35 (radius: 5)
[02:25:57 -2416.703724] SLOW spr round 36 (radius: 10)
[02:26:04 -2416.703722] SLOW spr round 37 (radius: 15)
[02:26:13 -2407.756768] SLOW spr round 38 (radius: 5)
[02:26:21 -2396.143419] SLOW spr round 39 (radius: 5)
[02:26:28 -2393.766109] SLOW spr round 40 (radius: 5)
[02:26:34 -2393.702068] SLOW spr round 41 (radius: 10)
[02:26:41 -2393.701377] SLOW spr round 42 (radius: 15)
[02:26:50 -2392.636892] SLOW spr round 43 (radius: 5)
[02:26:58 -2392.448486] SLOW spr round 44 (radius: 5)
[02:27:05 -2392.324338] SLOW spr round 45 (radius: 5)
[02:27:12 -2392.324337] SLOW spr round 46 (radius: 10)
[02:27:18 -2392.324337] SLOW spr round 47 (radius: 15)
[02:27:27 -2392.324335] SLOW spr round 48 (radius: 20)
[02:27:38 -2389.597578] SLOW spr round 49 (radius: 5)
[02:27:46 -2388.573179] SLOW spr round 50 (radius: 5)
[02:27:53 -2388.570789] SLOW spr round 51 (radius: 10)
[02:28:00 -2388.570124] SLOW spr round 52 (radius: 15)
[02:28:09 -2388.569789] SLOW spr round 53 (radius: 20)
[02:28:19 -2388.569620] SLOW spr round 54 (radius: 25)
[02:28:31 -2368.119593] SLOW spr round 55 (radius: 5)
[02:28:39 -2357.056966] SLOW spr round 56 (radius: 5)
[02:28:46 -2357.056964] SLOW spr round 57 (radius: 10)
[02:28:53 -2356.963715] SLOW spr round 58 (radius: 15)
[02:29:01 -2356.963216] SLOW spr round 59 (radius: 20)
[02:29:11 -2356.963006] SLOW spr round 60 (radius: 25)
[02:29:23 -2355.307329] SLOW spr round 61 (radius: 5)
[02:29:31 -2353.338271] SLOW spr round 62 (radius: 5)
[02:29:38 -2353.338254] SLOW spr round 63 (radius: 10)
[02:29:45 -2353.338250] SLOW spr round 64 (radius: 15)
[02:29:54 -2353.338249] SLOW spr round 65 (radius: 20)
[02:30:04 -2353.276530] SLOW spr round 66 (radius: 25)
[02:30:15 -2353.276529] Model parameter optimization (eps = 0.100000)

[02:30:17] ML tree search #16, logLikelihood: -2350.983443

[02:30:17 -6859.604752] Initial branch length optimization
[02:30:17 -5237.626197] Model parameter optimization (eps = 10.000000)
[02:30:21 -4975.276480] AUTODETECT spr round 1 (radius: 5)
[02:30:27 -4082.700444] AUTODETECT spr round 2 (radius: 10)
[02:30:33 -3562.392482] AUTODETECT spr round 3 (radius: 15)
[02:30:40 -3136.650491] AUTODETECT spr round 4 (radius: 20)
[02:30:48 -2897.260087] AUTODETECT spr round 5 (radius: 25)
[02:30:56 -2747.210985] SPR radius for FAST iterations: 25 (autodetect)
[02:30:56 -2747.210985] Model parameter optimization (eps = 3.000000)
[02:30:58 -2739.540960] FAST spr round 1 (radius: 25)
[02:31:05 -2468.216348] FAST spr round 2 (radius: 25)
[02:31:11 -2430.245412] FAST spr round 3 (radius: 25)
[02:31:17 -2428.737365] FAST spr round 4 (radius: 25)
[02:31:23 -2428.736961] Model parameter optimization (eps = 1.000000)
[02:31:26 -2426.493398] SLOW spr round 1 (radius: 5)
[02:31:32 -2424.219168] SLOW spr round 2 (radius: 5)
[02:31:39 -2424.217948] SLOW spr round 3 (radius: 10)
[02:31:46 -2422.188416] SLOW spr round 4 (radius: 5)
[02:31:54 -2420.809580] SLOW spr round 5 (radius: 5)
[02:32:01 -2420.809099] SLOW spr round 6 (radius: 10)
[02:32:08 -2420.808906] SLOW spr round 7 (radius: 15)
[02:32:16 -2418.051173] SLOW spr round 8 (radius: 5)
[02:32:25 -2414.619732] SLOW spr round 9 (radius: 5)
[02:32:31 -2414.508632] SLOW spr round 10 (radius: 5)
[02:32:38 -2414.508399] SLOW spr round 11 (radius: 10)
[02:32:45 -2414.508241] SLOW spr round 12 (radius: 15)
[02:32:54 -2413.068113] SLOW spr round 13 (radius: 5)
[02:33:02 -2413.067886] SLOW spr round 14 (radius: 10)
[02:33:09 -2413.067726] SLOW spr round 15 (radius: 15)
[02:33:18 -2413.067598] SLOW spr round 16 (radius: 20)
[02:33:29 -2403.532278] SLOW spr round 17 (radius: 5)
[02:33:37 -2402.863482] SLOW spr round 18 (radius: 5)
[02:33:44 -2401.925917] SLOW spr round 19 (radius: 5)
[02:33:51 -2399.440054] SLOW spr round 20 (radius: 5)
[02:33:58 -2399.437684] SLOW spr round 21 (radius: 10)
[02:34:05 -2397.532909] SLOW spr round 22 (radius: 5)
[02:34:12 -2397.532805] SLOW spr round 23 (radius: 10)
[02:34:19 -2396.048594] SLOW spr round 24 (radius: 5)
[02:34:27 -2396.046839] SLOW spr round 25 (radius: 10)
[02:34:34 -2396.046374] SLOW spr round 26 (radius: 15)
[02:34:42 -2394.537324] SLOW spr round 27 (radius: 5)
[02:34:50 -2394.536674] SLOW spr round 28 (radius: 10)
[02:34:58 -2390.010771] SLOW spr round 29 (radius: 5)
[02:35:05 -2389.744817] SLOW spr round 30 (radius: 5)
[02:35:12 -2389.744754] SLOW spr round 31 (radius: 10)
[02:35:19 -2388.499488] SLOW spr round 32 (radius: 5)
[02:35:26 -2388.499485] SLOW spr round 33 (radius: 10)
[02:35:33 -2388.499485] SLOW spr round 34 (radius: 15)
[02:35:42 -2388.499485] SLOW spr round 35 (radius: 20)
[02:35:52 -2388.499485] SLOW spr round 36 (radius: 25)
[02:36:04 -2364.685561] SLOW spr round 37 (radius: 5)
[02:36:12 -2354.881224] SLOW spr round 38 (radius: 5)
[02:36:19 -2354.879986] SLOW spr round 39 (radius: 10)
[02:36:26 -2354.879774] SLOW spr round 40 (radius: 15)
[02:36:35 -2344.886883] SLOW spr round 41 (radius: 5)
[02:36:44 -2326.222976] SLOW spr round 42 (radius: 5)
[02:36:51 -2322.918882] SLOW spr round 43 (radius: 5)
[02:36:57 -2322.918875] SLOW spr round 44 (radius: 10)
[02:37:04 -2322.402126] SLOW spr round 45 (radius: 5)
[02:37:12 -2322.402099] SLOW spr round 46 (radius: 10)
[02:37:19 -2322.402099] SLOW spr round 47 (radius: 15)
[02:37:27 -2320.857353] SLOW spr round 48 (radius: 5)
[02:37:35 -2320.857014] SLOW spr round 49 (radius: 10)
[02:37:43 -2320.857013] SLOW spr round 50 (radius: 15)
[02:37:51 -2320.857013] SLOW spr round 51 (radius: 20)
[02:38:01 -2320.857013] SLOW spr round 52 (radius: 25)
[02:38:13 -2317.570102] SLOW spr round 53 (radius: 5)
[02:38:22 -2267.306762] SLOW spr round 54 (radius: 5)
[02:38:29 -2263.414341] SLOW spr round 55 (radius: 5)
[02:38:36 -2263.412364] SLOW spr round 56 (radius: 10)
[02:38:43 -2238.920879] SLOW spr round 57 (radius: 5)
[02:38:51 -2231.460398] SLOW spr round 58 (radius: 5)
[02:38:58 -2231.181571] SLOW spr round 59 (radius: 5)
[02:39:04 -2231.181509] SLOW spr round 60 (radius: 10)
[02:39:11 -2231.181509] SLOW spr round 61 (radius: 15)
[02:39:20 -2231.181509] SLOW spr round 62 (radius: 20)
[02:39:30 -2218.006072] SLOW spr round 63 (radius: 5)
[02:39:38 -2211.012900] SLOW spr round 64 (radius: 5)
[02:39:45 -2211.012860] SLOW spr round 65 (radius: 10)
[02:39:52 -2211.012860] SLOW spr round 66 (radius: 15)
[02:40:01 -2210.685803] SLOW spr round 67 (radius: 5)
[02:40:09 -2210.685803] SLOW spr round 68 (radius: 10)
[02:40:16 -2210.685803] SLOW spr round 69 (radius: 15)
[02:40:25 -2210.685803] SLOW spr round 70 (radius: 20)
[02:40:34 -2209.168285] SLOW spr round 71 (radius: 5)
[02:40:42 -2209.168285] SLOW spr round 72 (radius: 10)
[02:40:50 -2209.168285] SLOW spr round 73 (radius: 15)
[02:40:59 -2208.630342] SLOW spr round 74 (radius: 5)
[02:41:06 -2208.629377] SLOW spr round 75 (radius: 10)
[02:41:14 -2208.629346] SLOW spr round 76 (radius: 15)
[02:41:22 -2208.629345] SLOW spr round 77 (radius: 20)
[02:41:32 -2208.629345] SLOW spr round 78 (radius: 25)
[02:41:43 -2193.903097] SLOW spr round 79 (radius: 5)
[02:41:52 -2189.607260] SLOW spr round 80 (radius: 5)
[02:41:59 -2189.607053] SLOW spr round 81 (radius: 10)
[02:42:06 -2189.607043] SLOW spr round 82 (radius: 15)
[02:42:15 -2185.971674] SLOW spr round 83 (radius: 5)
[02:42:23 -2185.971669] SLOW spr round 84 (radius: 10)
[02:42:30 -2185.971669] SLOW spr round 85 (radius: 15)
[02:42:39 -2185.971669] SLOW spr round 86 (radius: 20)
[02:42:48 -2185.971669] SLOW spr round 87 (radius: 25)
[02:42:59 -2185.532694] SLOW spr round 88 (radius: 5)
[02:43:07 -2185.333436] SLOW spr round 89 (radius: 5)
[02:43:14 -2185.333418] SLOW spr round 90 (radius: 10)
[02:43:21 -2183.508913] SLOW spr round 91 (radius: 5)
[02:43:28 -2183.480987] SLOW spr round 92 (radius: 10)
[02:43:36 -2183.480972] SLOW spr round 93 (radius: 15)
[02:43:45 -2183.480972] SLOW spr round 94 (radius: 20)
[02:43:54 -2183.480972] SLOW spr round 95 (radius: 25)
[02:44:04 -2183.480972] Model parameter optimization (eps = 0.100000)

[02:44:06] ML tree search #17, logLikelihood: -2178.629568

[02:44:06 -6866.322898] Initial branch length optimization
[02:44:06 -5174.800645] Model parameter optimization (eps = 10.000000)
[02:44:10 -4966.458446] AUTODETECT spr round 1 (radius: 5)
[02:44:15 -4199.782688] AUTODETECT spr round 2 (radius: 10)
[02:44:22 -3607.643345] AUTODETECT spr round 3 (radius: 15)
[02:44:29 -3311.064965] AUTODETECT spr round 4 (radius: 20)
[02:44:36 -3138.980017] AUTODETECT spr round 5 (radius: 25)
[02:44:44 -2884.482012] SPR radius for FAST iterations: 25 (autodetect)
[02:44:44 -2884.482012] Model parameter optimization (eps = 3.000000)
[02:44:46 -2881.235853] FAST spr round 1 (radius: 25)
[02:44:53 -2556.399548] FAST spr round 2 (radius: 25)
[02:44:59 -2521.609475] FAST spr round 3 (radius: 25)
[02:45:06 -2511.799775] FAST spr round 4 (radius: 25)
[02:45:12 -2511.799439] Model parameter optimization (eps = 1.000000)
[02:45:15 -2506.378271] SLOW spr round 1 (radius: 5)
[02:45:22 -2501.735377] SLOW spr round 2 (radius: 5)
[02:45:29 -2501.707789] SLOW spr round 3 (radius: 10)
[02:45:35 -2500.468939] SLOW spr round 4 (radius: 5)
[02:45:43 -2500.029257] SLOW spr round 5 (radius: 5)
[02:45:50 -2500.009090] SLOW spr round 6 (radius: 10)
[02:45:56 -2494.066353] SLOW spr round 7 (radius: 5)
[02:46:04 -2494.065814] SLOW spr round 8 (radius: 10)
[02:46:10 -2494.065795] SLOW spr round 9 (radius: 15)
[02:46:19 -2477.150937] SLOW spr round 10 (radius: 5)
[02:46:27 -2451.250723] SLOW spr round 11 (radius: 5)
[02:46:33 -2450.733551] SLOW spr round 12 (radius: 5)
[02:46:40 -2447.941825] SLOW spr round 13 (radius: 5)
[02:46:47 -2447.941809] SLOW spr round 14 (radius: 10)
[02:46:53 -2447.941809] SLOW spr round 15 (radius: 15)
[02:47:01 -2447.941809] SLOW spr round 16 (radius: 20)
[02:47:11 -2429.181071] SLOW spr round 17 (radius: 5)
[02:47:19 -2429.043419] SLOW spr round 18 (radius: 5)
[02:47:26 -2429.041045] SLOW spr round 19 (radius: 10)
[02:47:32 -2429.040392] SLOW spr round 20 (radius: 15)
[02:47:41 -2428.858183] SLOW spr round 21 (radius: 5)
[02:47:49 -2428.857739] SLOW spr round 22 (radius: 10)
[02:47:55 -2428.857660] SLOW spr round 23 (radius: 15)
[02:48:04 -2428.857640] SLOW spr round 24 (radius: 20)
[02:48:13 -2428.857635] SLOW spr round 25 (radius: 25)
[02:48:23 -2428.727597] SLOW spr round 26 (radius: 5)
[02:48:31 -2428.727547] SLOW spr round 27 (radius: 10)
[02:48:38 -2428.727539] SLOW spr round 28 (radius: 15)
[02:48:46 -2428.727537] SLOW spr round 29 (radius: 20)
[02:48:55 -2428.727536] SLOW spr round 30 (radius: 25)
[02:49:05 -2427.464613] SLOW spr round 31 (radius: 5)
[02:49:13 -2426.495560] SLOW spr round 32 (radius: 5)
[02:49:20 -2426.495560] SLOW spr round 33 (radius: 10)
[02:49:27 -2426.495560] SLOW spr round 34 (radius: 15)
[02:49:35 -2426.495560] SLOW spr round 35 (radius: 20)
[02:49:44 -2426.495560] SLOW spr round 36 (radius: 25)
[02:49:54 -2421.250730] SLOW spr round 37 (radius: 5)
[02:50:03 -2420.402490] SLOW spr round 38 (radius: 5)
[02:50:10 -2420.402283] SLOW spr round 39 (radius: 10)
[02:50:17 -2420.402146] SLOW spr round 40 (radius: 15)
[02:50:25 -2417.598681] SLOW spr round 41 (radius: 5)
[02:50:33 -2405.303511] SLOW spr round 42 (radius: 5)
[02:50:40 -2405.300609] SLOW spr round 43 (radius: 10)
[02:50:47 -2405.300555] SLOW spr round 44 (radius: 15)
[02:50:55 -2405.300550] SLOW spr round 45 (radius: 20)
[02:51:04 -2405.010603] SLOW spr round 46 (radius: 5)
[02:51:12 -2405.010417] SLOW spr round 47 (radius: 10)
[02:51:19 -2403.333617] SLOW spr round 48 (radius: 5)
[02:51:27 -2403.258145] SLOW spr round 49 (radius: 10)
[02:51:34 -2403.258068] SLOW spr round 50 (radius: 15)
[02:51:42 -2403.258068] SLOW spr round 51 (radius: 20)
[02:51:50 -2403.258067] SLOW spr round 52 (radius: 25)
[02:52:00 -2403.258067] Model parameter optimization (eps = 0.100000)

[02:52:02] ML tree search #18, logLikelihood: -2397.653132

[02:52:02 -6947.425744] Initial branch length optimization
[02:52:02 -5200.394044] Model parameter optimization (eps = 10.000000)
[02:52:05 -4998.007377] AUTODETECT spr round 1 (radius: 5)
[02:52:11 -4131.517090] AUTODETECT spr round 2 (radius: 10)
[02:52:17 -3652.145827] AUTODETECT spr round 3 (radius: 15)
[02:52:24 -3268.094365] AUTODETECT spr round 4 (radius: 20)
[02:52:32 -2962.865379] AUTODETECT spr round 5 (radius: 25)
[02:52:40 -2717.889866] SPR radius for FAST iterations: 25 (autodetect)
[02:52:40 -2717.889866] Model parameter optimization (eps = 3.000000)
[02:52:43 -2700.474194] FAST spr round 1 (radius: 25)
[02:52:50 -2447.937719] FAST spr round 2 (radius: 25)
[02:52:56 -2427.537275] FAST spr round 3 (radius: 25)
[02:53:02 -2402.610059] FAST spr round 4 (radius: 25)
[02:53:08 -2389.795518] FAST spr round 5 (radius: 25)
[02:53:14 -2386.781469] FAST spr round 6 (radius: 25)
[02:53:20 -2386.781405] Model parameter optimization (eps = 1.000000)
[02:53:21 -2386.443538] SLOW spr round 1 (radius: 5)
[02:53:28 -2385.678174] SLOW spr round 2 (radius: 5)
[02:53:34 -2385.677269] SLOW spr round 3 (radius: 10)
[02:53:41 -2385.528607] SLOW spr round 4 (radius: 5)
[02:53:49 -2384.902953] SLOW spr round 5 (radius: 5)
[02:53:56 -2384.901613] SLOW spr round 6 (radius: 10)
[02:54:02 -2384.900543] SLOW spr round 7 (radius: 15)
[02:54:11 -2381.604016] SLOW spr round 8 (radius: 5)
[02:54:19 -2380.311927] SLOW spr round 9 (radius: 5)
[02:54:26 -2380.311679] SLOW spr round 10 (radius: 10)
[02:54:32 -2380.311573] SLOW spr round 11 (radius: 15)
[02:54:41 -2380.311529] SLOW spr round 12 (radius: 20)
[02:54:50 -2380.144027] SLOW spr round 13 (radius: 5)
[02:54:58 -2380.144020] SLOW spr round 14 (radius: 10)
[02:55:06 -2376.373806] SLOW spr round 15 (radius: 5)
[02:55:13 -2376.364163] SLOW spr round 16 (radius: 10)
[02:55:20 -2376.364028] SLOW spr round 17 (radius: 15)
[02:55:28 -2376.364022] SLOW spr round 18 (radius: 20)
[02:55:38 -2376.364021] SLOW spr round 19 (radius: 25)
[02:55:48 -2360.400898] SLOW spr round 20 (radius: 5)
[02:55:56 -2355.777016] SLOW spr round 21 (radius: 5)
[02:56:03 -2355.776839] SLOW spr round 22 (radius: 10)
[02:56:10 -2355.776838] SLOW spr round 23 (radius: 15)
[02:56:19 -2354.534929] SLOW spr round 24 (radius: 5)
[02:56:27 -2352.822795] SLOW spr round 25 (radius: 5)
[02:56:34 -2346.846074] SLOW spr round 26 (radius: 5)
[02:56:40 -2346.842640] SLOW spr round 27 (radius: 10)
[02:56:47 -2346.165332] SLOW spr round 28 (radius: 5)
[02:56:55 -2346.157388] SLOW spr round 29 (radius: 10)
[02:57:02 -2346.157388] SLOW spr round 30 (radius: 15)
[02:57:10 -2333.636367] SLOW spr round 31 (radius: 5)
[02:57:18 -2311.210055] SLOW spr round 32 (radius: 5)
[02:57:25 -2311.210044] SLOW spr round 33 (radius: 10)
[02:57:32 -2310.374186] SLOW spr round 34 (radius: 5)
[02:57:39 -2310.374173] SLOW spr round 35 (radius: 10)
[02:57:46 -2310.374172] SLOW spr round 36 (radius: 15)
[02:57:55 -2310.374172] SLOW spr round 37 (radius: 20)
[02:58:04 -2310.374172] SLOW spr round 38 (radius: 25)
[02:58:14 -2295.303636] SLOW spr round 39 (radius: 5)
[02:58:23 -2294.893153] SLOW spr round 40 (radius: 5)
[02:58:30 -2294.893152] SLOW spr round 41 (radius: 10)
[02:58:37 -2294.893152] SLOW spr round 42 (radius: 15)
[02:58:45 -2278.817350] SLOW spr round 43 (radius: 5)
[02:58:53 -2263.081442] SLOW spr round 44 (radius: 5)
[02:59:00 -2263.081389] SLOW spr round 45 (radius: 10)
[02:59:07 -2261.742614] SLOW spr round 46 (radius: 5)
[02:59:14 -2261.742052] SLOW spr round 47 (radius: 10)
[02:59:21 -2261.742032] SLOW spr round 48 (radius: 15)
[02:59:30 -2261.742032] SLOW spr round 49 (radius: 20)
[02:59:39 -2261.431717] SLOW spr round 50 (radius: 5)
[02:59:47 -2261.431704] SLOW spr round 51 (radius: 10)
[02:59:55 -2261.431704] SLOW spr round 52 (radius: 15)
[03:00:03 -2261.431704] SLOW spr round 53 (radius: 20)
[03:00:13 -2261.431704] SLOW spr round 54 (radius: 25)
[03:00:23 -2259.126992] SLOW spr round 55 (radius: 5)
[03:00:31 -2259.126989] SLOW spr round 56 (radius: 10)
[03:00:39 -2259.126989] SLOW spr round 57 (radius: 15)
[03:00:47 -2259.126989] SLOW spr round 58 (radius: 20)
[03:00:56 -2259.126989] SLOW spr round 59 (radius: 25)
[03:01:07 -2259.126989] Model parameter optimization (eps = 0.100000)

[03:01:08] ML tree search #19, logLikelihood: -2257.927673

[03:01:08 -6857.492323] Initial branch length optimization
[03:01:08 -5187.858379] Model parameter optimization (eps = 10.000000)
[03:01:12 -4979.043295] AUTODETECT spr round 1 (radius: 5)
[03:01:17 -4227.015846] AUTODETECT spr round 2 (radius: 10)
[03:01:24 -3615.084812] AUTODETECT spr round 3 (radius: 15)
[03:01:31 -3222.469924] AUTODETECT spr round 4 (radius: 20)
[03:01:38 -3028.931444] AUTODETECT spr round 5 (radius: 25)
[03:01:47 -2797.682169] SPR radius for FAST iterations: 25 (autodetect)
[03:01:47 -2797.682169] Model parameter optimization (eps = 3.000000)
[03:01:49 -2791.566737] FAST spr round 1 (radius: 25)
[03:01:55 -2523.685842] FAST spr round 2 (radius: 25)
[03:02:02 -2481.481925] FAST spr round 3 (radius: 25)
[03:02:08 -2449.280422] FAST spr round 4 (radius: 25)
[03:02:14 -2438.338388] FAST spr round 5 (radius: 25)
[03:02:20 -2438.121441] FAST spr round 6 (radius: 25)
[03:02:26 -2438.121106] Model parameter optimization (eps = 1.000000)
[03:02:27 -2436.620618] SLOW spr round 1 (radius: 5)
[03:02:34 -2433.271762] SLOW spr round 2 (radius: 5)
[03:02:41 -2428.674213] SLOW spr round 3 (radius: 5)
[03:02:48 -2424.571995] SLOW spr round 4 (radius: 5)
[03:02:55 -2424.408551] SLOW spr round 5 (radius: 5)
[03:03:01 -2424.408126] SLOW spr round 6 (radius: 10)
[03:03:08 -2405.364875] SLOW spr round 7 (radius: 5)
[03:03:16 -2405.361064] SLOW spr round 8 (radius: 10)
[03:03:23 -2405.178322] SLOW spr round 9 (radius: 5)
[03:03:30 -2405.178249] SLOW spr round 10 (radius: 10)
[03:03:37 -2405.178220] SLOW spr round 11 (radius: 15)
[03:03:46 -2372.482130] SLOW spr round 12 (radius: 5)
[03:03:54 -2362.468070] SLOW spr round 13 (radius: 5)
[03:04:01 -2362.467935] SLOW spr round 14 (radius: 10)
[03:04:08 -2362.467932] SLOW spr round 15 (radius: 15)
[03:04:17 -2362.026453] SLOW spr round 16 (radius: 5)
[03:04:25 -2362.026404] SLOW spr round 17 (radius: 10)
[03:04:32 -2362.026391] SLOW spr round 18 (radius: 15)
[03:04:40 -2362.026388] SLOW spr round 19 (radius: 20)
[03:04:50 -2359.420323] SLOW spr round 20 (radius: 5)
[03:04:58 -2357.798259] SLOW spr round 21 (radius: 5)
[03:05:05 -2356.881033] SLOW spr round 22 (radius: 5)
[03:05:12 -2356.881019] SLOW spr round 23 (radius: 10)
[03:05:18 -2356.881015] SLOW spr round 24 (radius: 15)
[03:05:27 -2356.881014] SLOW spr round 25 (radius: 20)
[03:05:37 -2356.881010] SLOW spr round 26 (radius: 25)
[03:05:47 -2342.507056] SLOW spr round 27 (radius: 5)
[03:05:56 -2331.943344] SLOW spr round 28 (radius: 5)
[03:06:03 -2331.059679] SLOW spr round 29 (radius: 5)
[03:06:10 -2331.059541] SLOW spr round 30 (radius: 10)
[03:06:16 -2331.059533] SLOW spr round 31 (radius: 15)
[03:06:25 -2297.282031] SLOW spr round 32 (radius: 5)
[03:06:33 -2297.282022] SLOW spr round 33 (radius: 10)
[03:06:40 -2297.282022] SLOW spr round 34 (radius: 15)
[03:06:49 -2297.282022] SLOW spr round 35 (radius: 20)
[03:06:58 -2296.496030] SLOW spr round 36 (radius: 5)
[03:07:06 -2296.495138] SLOW spr round 37 (radius: 10)
[03:07:13 -2296.495060] SLOW spr round 38 (radius: 15)
[03:07:22 -2296.495052] SLOW spr round 39 (radius: 20)
[03:07:32 -2296.495051] SLOW spr round 40 (radius: 25)
[03:07:42 -2290.073637] SLOW spr round 41 (radius: 5)
[03:07:50 -2290.073530] SLOW spr round 42 (radius: 10)
[03:07:57 -2290.073527] SLOW spr round 43 (radius: 15)
[03:08:06 -2290.073527] SLOW spr round 44 (radius: 20)
[03:08:16 -2290.073527] SLOW spr round 45 (radius: 25)
[03:08:26 -2290.073527] Model parameter optimization (eps = 0.100000)

[03:08:28] ML tree search #20, logLikelihood: -2285.866319


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.451551,0.859070) (0.184809,0.290848) (0.181820,1.320962) (0.181820,1.749848) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -2167.997118

AIC score: 5869.994236 / AICc score: 1183981.994236 / BIC score: 6175.179910
Free parameters (model + branch lengths): 767

WARNING: Number of free parameters (K=767) is larger than alignment size (n=11).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 2 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C5J1/3_mltree/P0C5J1.raxml.log

Analysis started: 15-Jul-2021 02:43:26 / finished: 15-Jul-2021 05:51:55

Elapsed time: 11308.772 seconds

Consumed energy: 846.927 Wh (= 4 km in an electric car, or 21 km with an e-scooter!)