RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:32:38 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/2_msa/P0C264_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/3_mltree/P0C264.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626100358 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/2_msa/P0C264_nogap_msa.fasta [00:00:00] Loaded alignment with 862 taxa and 359 sites WARNING: Sequences tr_B4Q513_B4Q513_DROSI_7240 and tr_B4HXX3_B4HXX3_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QI05_B4QI05_DROSI_7240 and tr_B4HT58_B4HT58_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2R8QDD3_A0A2R8QDD3_DANRE_7955 and tr_E7F7I3_E7F7I3_DANRE_7955 are exactly identical! WARNING: Sequences tr_H9L0G1_H9L0G1_CHICK_9031 and tr_A0A226P4H5_A0A226P4H5_COLVI_9014 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_G1S4U2_G1S4U2_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_G1P8G3_G1P8G3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_G3R8H1_G3R8H1_GORGO_9595 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_H2P6C3_H2P6C3_PONAB_9601 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_K7CBH8_K7CBH8_PANTR_9598 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_H0VV11_H0VV11_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and sp_Q02156_KPCE_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_F7BIC2_F7BIC2_MACMU_9544 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_G3SWS9_G3SWS9_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_U3FXN4_U3FXN4_CALJA_9483 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_G7PM48_G7PM48_MACFA_9541 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_F1MDC9_F1MDC9_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2I3LQL3_A0A2I3LQL3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A091CL19_A0A091CL19_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A0D9RLN1_A0A0D9RLN1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A1S3FAS7_A0A1S3FAS7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2K5NF50_A0A2K5NF50_CERAT_9531 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2K6BZK0_A0A2K6BZK0_MACNE_9545 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2K5YJ45_A0A2K5YJ45_MANLE_9568 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2R9AUU7_A0A2R9AUU7_PANPA_9597 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2U4BY98_A0A2U4BY98_TURTR_9739 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2Y9D8M7_A0A2Y9D8M7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A2Y9SAE3_A0A2Y9SAE3_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P16054_KPCE_MOUSE_10090 and tr_A0A384ARX2_A0A384ARX2_BALAS_310752 are exactly identical! WARNING: Sequences sp_P23298_KPCL_MOUSE_10090 and sp_Q64617_KPCL_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Z7H1_M3Z7H1_MUSPF_9669 and tr_G1TVM4_G1TVM4_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Z7H1_M3Z7H1_MUSPF_9669 and tr_A0A2Y9IZW1_A0A2Y9IZW1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_G1PR60_G1PR60_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_G3RL25_G3RL25_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and sp_Q5R7A7_SGK3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and sp_Q96BR1_SGK3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A341ZMI8_A0A341ZMI8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A096MSU4_A0A096MSU4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A0D9RNU8_A0A0D9RNU8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A2K6E607_A0A2K6E607_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A2K6A2S7_A0A2K6A2S7_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A2R9BP29_A0A2R9BP29_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A2U3W2S8_A0A2U3W2S8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A2U3XSR0_A0A2U3XSR0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3ZA25_M3ZA25_NOMLE_61853 and tr_A0A384DDR2_A0A384DDR2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G3QZ70_G3QZ70_GORGO_9595 and tr_H2Q8F2_H2Q8F2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZ70_G3QZ70_GORGO_9595 and tr_F7HD36_F7HD36_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QZ70_G3QZ70_GORGO_9595 and tr_A0A2R9AS27_A0A2R9AS27_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_H2R688_H2R688_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and sp_Q9BXA6_TSSK6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_G7NNH2_G7NNH2_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_G7PX18_G7PX18_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_A0A0A0MVT0_A0A0A0MVT0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_A0A0D9SB00_A0A0D9SB00_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_A0A2K6AS74_A0A2K6AS74_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_A0A2K5XGV3_A0A2K5XGV3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2J8T5E1_A0A2J8T5E1_PONAB_9601 and tr_A0A2R8ZN56_A0A2R8ZN56_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NQH7_H2NQH7_PONAB_9601 and sp_Q52WX2_SBK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_U3KES8_U3KES8_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A0Q3RAB7_A0A0Q3RAB7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A093QJC5_A0A093QJC5_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A093JTU0_A0A093JTU0_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A091WFJ8_A0A091WFJ8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A2I0MAM9_A0A2I0MAM9_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A091I6E4_A0A091I6E4_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1NCZ2_G1NCZ2_MELGA_9103 and tr_A0A1V4JJL9_A0A1V4JJL9_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and sp_P10830_KPCE_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q29P14_Q29P14_DROPS_46245 and tr_B4GJX3_B4GJX3_DROPE_7234 are exactly identical! WARNING: Sequences tr_F1PMX4_F1PMX4_CANLF_9615 and tr_G1LHE1_G1LHE1_AILME_9646 are exactly identical! WARNING: Sequences tr_F1PMX4_F1PMX4_CANLF_9615 and tr_A0A2I2USU9_A0A2I2USU9_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1PMX4_F1PMX4_CANLF_9615 and tr_A0A2U3W5N5_A0A2U3W5N5_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1PMX4_F1PMX4_CANLF_9615 and tr_A0A2U3YAB8_A0A2U3YAB8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5P771_W5P771_SHEEP_9940 and tr_A0A1S2ZRE6_A0A1S2ZRE6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_W5Q8T6_W5Q8T6_SHEEP_9940 and tr_L5JTK4_L5JTK4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_D3ZEK4_D3ZEK4_RAT_10116 and tr_A0A1U7R594_A0A1U7R594_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A158NT63_A0A158NT63_ATTCE_12957 and tr_F4WXR7_F4WXR7_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NT63_A0A158NT63_ATTCE_12957 and tr_A0A151WTI7_A0A151WTI7_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NT63_A0A158NT63_ATTCE_12957 and tr_A0A195BW31_A0A195BW31_9HYME_520822 are exactly identical! WARNING: Sequences tr_D0MUH5_D0MUH5_PHYIT_403677 and tr_A0A329SVA8_A0A329SVA8_9STRA_29920 are exactly identical! WARNING: Sequences tr_F6YB20_F6YB20_MACMU_9544 and tr_A0A2I3MCH1_A0A2I3MCH1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6YB20_F6YB20_MACMU_9544 and tr_A0A2K5LSZ2_A0A2K5LSZ2_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_G7PAH0_G7PAH0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A096NVI4_A0A096NVI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A2K5KX36_A0A2K5KX36_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A2K6DL10_A0A2K6DL10_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A2K6A797_A0A2K6A797_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XA75_G7XA75_ASPKW_1033177 and tr_A0A146FAC4_A0A146FAC4_9EURO_1069201 are exactly identical! WARNING: Sequences tr_H0ZM45_H0ZM45_TAEGU_59729 and tr_A0A218VC76_A0A218VC76_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A286ZHW7_A0A286ZHW7_PIG_9823 and tr_A0A2Y9PB17_A0A2Y9PB17_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1L8P0_G1L8P0_AILME_9646 and tr_A0A2Y9L4T2_A0A2Y9L4T2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_L0PAR1_L0PAR1_PNEJ8_1209962 and tr_A0A0W4ZGI8_A0A0W4ZGI8_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_A0A0A1NR63_A0A0A1NR63_9FUNG_58291 and tr_A0A367K9E2_A0A367K9E2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151MNL2_A0A151MNL2_ALLMI_8496 and tr_A0A1U7SE31_A0A1U7SE31_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N6B6_A0A151N6B6_ALLMI_8496 and tr_A0A3Q0FNZ6_A0A3Q0FNZ6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NWR5_A0A151NWR5_ALLMI_8496 and tr_A0A3Q0GLF7_A0A3Q0GLF7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0W8DXJ2_A0A0W8DXJ2_PHYNI_4790 and tr_W2LXY5_W2LXY5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A091E8R4_A0A091E8R4_CORBR_85066 and tr_A0A093SZV9_A0A093SZV9_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091URD7_A0A091URD7_NIPNI_128390 and tr_A0A087QIB4_A0A087QIB4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091URD7_A0A091URD7_NIPNI_128390 and tr_A0A093GA77_A0A093GA77_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091VML7_A0A091VML7_NIPNI_128390 and tr_A0A087QI42_A0A087QI42_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VML7_A0A091VML7_NIPNI_128390 and tr_A0A093JGR0_A0A093JGR0_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091VML7_A0A091VML7_NIPNI_128390 and tr_A0A091WKH8_A0A091WKH8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VML7_A0A091VML7_NIPNI_128390 and tr_A0A099ZL43_A0A099ZL43_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091VML7_A0A091VML7_NIPNI_128390 and tr_A0A0A0AIK0_A0A0A0AIK0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091VML7_A0A091VML7_NIPNI_128390 and tr_A0A091IHZ3_A0A091IHZ3_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0LP36_A0A2I0LP36_COLLI_8932 and tr_A0A1V4KTD4_A0A1V4KTD4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1MQG4_A0A0V1MQG4_9BILA_268474 and tr_A0A0V1GXE3_A0A0V1GXE3_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A2H3AQ65_A0A2H3AQ65_9AGAR_1076256 and tr_A0A284RRG4_A0A284RRG4_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2D0QC44_A0A2D0QC44_ICTPU_7998 and tr_A0A2D0QDS2_A0A2D0QDS2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AJ07_A0A2U4AJ07_TURTR_9739 and tr_A0A2Y9T1N5_A0A2Y9T1N5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9NA69_A0A2Y9NA69_DELLE_9749 and tr_A0A2Y9SBW7_A0A2Y9SBW7_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 110 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264.raxml.reduced.phy Alignment comprises 1 partitions and 359 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 359 Gaps: 21.69 % Invariant sites: 0.28 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/3_mltree/P0C264.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 90 / 7200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -149109.224246 [00:00:00 -149109.224246] Initial branch length optimization [00:00:00 -131880.138883] Model parameter optimization (eps = 0.100000) [00:00:28] Tree #1, final logLikelihood: -131689.080367 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.100840,0.262188) (0.221862,0.313824) (0.290682,0.779089) (0.386616,1.752304) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P0C264/4_raxmlng_ancestral/P0C264.raxml.log Analysis started: 12-Jul-2021 17:32:38 / finished: 12-Jul-2021 17:33:09 Elapsed time: 31.114 seconds Consumed energy: 2.546 Wh