RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 14:59:07 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/2_msa/P09471_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/3_mltree/P09471.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622635147 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/2_msa/P09471_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 354 sites WARNING: Sequences tr_E1BXS2_E1BXS2_CHICK_9031 and tr_A0A091JP89_A0A091JP89_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BXS2_E1BXS2_CHICK_9031 and tr_A0A087RE73_A0A087RE73_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_G1N7P7_G1N7P7_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_H0ZI79_H0ZI79_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_U3JY49_U3JY49_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_U3IMY4_U3IMY4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A151N499_A0A151N499_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A0Q3U1S4_A0A0Q3U1S4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A091ENF6_A0A091ENF6_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A091K6T8_A0A091K6T8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A093Q0F9_A0A093Q0F9_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A091W265_A0A091W265_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A087R3G2_A0A087R3G2_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A093I9D1_A0A093I9D1_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A091X883_A0A091X883_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A099ZBR3_A0A099ZBR3_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A091FR91_A0A091FR91_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A0A0ASV0_A0A0A0ASV0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A2I0LZ60_A0A2I0LZ60_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A1U7RVU0_A0A1U7RVU0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A1V4JRK1_A0A1V4JRK1_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A218V2F2_A0A218V2F2_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A226NAY4_A0A226NAY4_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NZY0_F1NZY0_CHICK_9031 and tr_A0A226P0Q0_A0A226P0Q0_COLVI_9014 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_M3Z3L1_M3Z3L1_MUSPF_9669 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_G3QYF3_G3QYF3_GORGO_9595 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2I3S4R3_A0A2I3S4R3_PANTR_9598 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and sp_P63096_GNAI1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_G3TPI4_G3TPI4_LOXAF_9785 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_F1SB90_F1SB90_PIG_9823 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and sp_P63097_GNAI1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_M3W792_M3W792_FELCA_9685 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A096MZM0_A0A096MZM0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A0D9RHH6_A0A0D9RHH6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A1S3AKH7_A0A1S3AKH7_ERIEU_9365 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A1U7U5W0_A0A1U7U5W0_TARSY_1868482 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2K6D425_A0A2K6D425_MACNE_9545 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2U4BS95_A0A2U4BS95_TURTR_9739 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2U3VGF2_A0A2U3VGF2_ODORO_9708 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2U3XNF7_A0A2U3XNF7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2Y9DVT4_A0A2Y9DVT4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2Y9KDF4_A0A2Y9KDF4_ENHLU_391180 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A2Y9F3S1_A0A2Y9F3S1_PHYCD_9755 are exactly identical! WARNING: Sequences sp_B2RSH2_GNAI1_MOUSE_10090 and tr_A0A384AIK2_A0A384AIK2_BALAS_310752 are exactly identical! WARNING: Sequences sp_O70443_GNAZ_MOUSE_10090 and tr_G3HMY7_G3HMY7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P20612_GNAT1_MOUSE_10090 and tr_H0X739_H0X739_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XUR3_M3XUR3_MUSPF_9669 and tr_E2R3J3_E2R3J3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XUR3_M3XUR3_MUSPF_9669 and tr_D2I2X2_D2I2X2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XUR3_M3XUR3_MUSPF_9669 and tr_M3VXS8_M3VXS8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XUR3_M3XUR3_MUSPF_9669 and tr_A0A2U3VYE1_A0A2U3VYE1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XUR3_M3XUR3_MUSPF_9669 and tr_A0A2U3YD05_A0A2U3YD05_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XUR3_M3XUR3_MUSPF_9669 and tr_A0A2Y9ISA2_A0A2Y9ISA2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_G1SP68_G1SP68_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_Q06AS8_Q06AS8_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A2I2U673_A0A2I2U673_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A1U7TSB7_A0A1U7TSB7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A2U3WF26_A0A2U3WF26_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A2Y9IZ94_A0A2Y9IZ94_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A2Y9PBM0_A0A2Y9PBM0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A2Y9ER06_A0A2Y9ER06_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A384D581_A0A384D581_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XW14_M3XW14_MUSPF_9669 and tr_A0A383Z373_A0A383Z373_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_E2RLG2_E2RLG2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_F6ZUY5_F6ZUY5_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and sp_P09471_GNAO_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_F7GQC5_F7GQC5_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_G1MDW1_G1MDW1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_A0A096NIG5_A0A096NIG5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_A0A0D9QYM7_A0A0D9QYM7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_A0A2K5ZLQ6_A0A2K5ZLQ6_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XWF8_M3XWF8_MUSPF_9669 and tr_A0A2U3VLM4_A0A2U3VLM4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YNV7_M3YNV7_MUSPF_9669 and tr_Q06AS6_Q06AS6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YNV7_M3YNV7_MUSPF_9669 and tr_D2HET1_D2HET1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YNV7_M3YNV7_MUSPF_9669 and tr_A0A337SF86_A0A337SF86_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YNV7_M3YNV7_MUSPF_9669 and tr_A0A2U3VV83_A0A2U3VV83_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YNV7_M3YNV7_MUSPF_9669 and tr_A0A2Y9N3J0_A0A2Y9N3J0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YNV7_M3YNV7_MUSPF_9669 and tr_A0A2Y9FHK9_A0A2Y9FHK9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YP48_M3YP48_MUSPF_9669 and tr_M3W6X1_M3W6X1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YP48_M3YP48_MUSPF_9669 and tr_A0A2Y9IYX7_A0A2Y9IYX7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_G3SCU6_G3SCU6_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_H2N6H9_H2N6H9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_H2PZK9_H2PZK9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and sp_P08754_GNAI3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_F6VL43_F6VL43_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_G7NW34_G7NW34_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_A0A096NWS6_A0A096NWS6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_A0A2K5LLH1_A0A2K5LLH1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_A0A2K5ZEK6_A0A2K5ZEK6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HE78_A0A2I3HE78_NOMLE_61853 and tr_A0A2R9BVD2_A0A2R9BVD2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and tr_H2QMN4_H2QMN4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and sp_P04899_GNAI2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and tr_A0A096MUH7_A0A096MUH7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and tr_A0A0D9RPC3_A0A0D9RPC3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and tr_A0A1U7TF75_A0A1U7TF75_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and tr_A0A2K5NXA1_A0A2K5NXA1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R5L7_G1R5L7_NOMLE_61853 and tr_A0A2K6CA70_A0A2K6CA70_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_G3RJV2_G3RJV2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_H2QLC1_H2QLC1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and sp_P19086_GNAZ_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_F7GJC8_F7GJC8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_F7I574_F7I574_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_A0A096NRB0_A0A096NRB0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_A0A0D9RNH6_A0A0D9RNH6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_A0A2K5KHT8_A0A2K5KHT8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_A0A2K6DU18_A0A2K6DU18_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RZV9_G1RZV9_NOMLE_61853 and tr_A0A2K5ZA32_A0A2K5ZA32_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3HMH5_G3HMH5_CRIGR_10029 and tr_A0A2J8VLH9_A0A2J8VLH9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3HMH5_G3HMH5_CRIGR_10029 and tr_F1P977_F1P977_CANLF_9615 are exactly identical! WARNING: Sequences tr_G3HMH5_G3HMH5_CRIGR_10029 and tr_F7EZT2_F7EZT2_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YU68_A0A2I2YU68_GORGO_9595 and tr_A0A2I3TFM8_A0A2I3TFM8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YU68_A0A2I2YU68_GORGO_9595 and tr_A0A2I2U651_A0A2I2U651_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3QVV7_G3QVV7_GORGO_9595 and tr_A0A2R9ANZ4_A0A2R9ANZ4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A2J8P954_A0A2J8P954_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and sp_P11488_GNAT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_G7NXT3_G7NXT3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A096MP14_A0A096MP14_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A0D9RPE2_A0A0D9RPE2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A2K5P5U8_A0A2K5P5U8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A2K6EB03_A0A2K6EB03_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A2K6AKH4_A0A2K6AKH4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QZZ3_G3QZZ3_GORGO_9595 and tr_A0A2R9AZM2_A0A2R9AZM2_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_H2RBI6_H2RBI6_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and sp_A8MTJ3_GNAT3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_G7P1X3_G7P1X3_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_A0A096NRM0_A0A096NRM0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_A0A0D9RHI1_A0A0D9RHI1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_A0A2K5NHQ4_A0A2K5NHQ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_A0A2K6BTD5_A0A2K6BTD5_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_A0A2K5YEJ5_A0A2K5YEJ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2PN19_H2PN19_PONAB_9601 and tr_A0A2R8ZVH6_A0A2R8ZVH6_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q28300_GNAT1_CANLF_9615 and tr_F7I5Q7_F7I5Q7_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q28300_GNAT1_CANLF_9615 and tr_A0A1U8C207_A0A1U8C207_MESAU_10036 are exactly identical! WARNING: Sequences tr_H2PZL0_H2PZL0_PANTR_9598 and sp_P19087_GNAT2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PZL0_H2PZL0_PANTR_9598 and tr_A0A2R8ZSU7_A0A2R8ZSU7_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7B680_F7B680_HORSE_9796 and sp_P04695_GNAT1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F7B680_F7B680_HORSE_9796 and tr_A0A2Y9NHK8_A0A2Y9NHK8_DELLE_9749 are exactly identical! WARNING: Sequences tr_F7B680_F7B680_HORSE_9796 and tr_A0A2Y9FJS5_A0A2Y9FJS5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PKD3_W5PKD3_SHEEP_9940 and tr_A7MBH9_A7MBH9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5PWN0_A0A3B5PWN0_XIPMA_8083 and tr_A0A087YFW3_A0A087YFW3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q039_A0A3B5Q039_XIPMA_8083 and tr_A0A087YP94_A0A087YP94_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q661_A0A3B5Q661_XIPMA_8083 and tr_A0A087X680_A0A087X680_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZRB5_M3ZRB5_XIPMA_8083 and tr_A0A087YFH9_A0A087YFH9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A7Y3_A0A088A7Y3_APIME_7460 and tr_A0A0M8ZZM8_A0A0M8ZZM8_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A158NRT7_A0A158NRT7_ATTCE_12957 and tr_F4WQR9_F4WQR9_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NRT7_A0A158NRT7_ATTCE_12957 and tr_A0A195BRK0_A0A195BRK0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NRT7_A0A158NRT7_ATTCE_12957 and tr_A0A195ERK8_A0A195ERK8_9HYME_34720 are exactly identical! WARNING: Sequences tr_H2VA26_H2VA26_TAKRU_31033 and tr_H3CV91_H3CV91_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A286XAE3_A0A286XAE3_CAVPO_10141 and tr_G5B623_G5B623_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A286XAE3_A0A286XAE3_CAVPO_10141 and tr_A0A091CYD1_A0A091CYD1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0K0J8T3_A0A0K0J8T3_BRUMA_6279 and tr_A0A0N4SWW7_A0A0N4SWW7_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JJN7_A0A0K0JJN7_BRUMA_6279 and tr_A0A0N4SZC1_A0A0N4SZC1_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JJN7_A0A0K0JJN7_BRUMA_6279 and tr_A0A0R3R5M0_A0A0R3R5M0_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0K0JVC8_A0A0K0JVC8_BRUMA_6279 and tr_A0A0N4T3Q7_A0A0N4T3Q7_BRUPA_6280 are exactly identical! WARNING: Sequences tr_F6VKI4_F6VKI4_MACMU_9544 and tr_G7NW35_G7NW35_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VKI4_F6VKI4_MACMU_9544 and tr_A0A096MX20_A0A096MX20_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6VKI4_F6VKI4_MACMU_9544 and tr_A0A0D9S6I7_A0A0D9S6I7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6VKI4_F6VKI4_MACMU_9544 and tr_A0A2K5MW52_A0A2K5MW52_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6VKI4_F6VKI4_MACMU_9544 and tr_A0A2K6B2X2_A0A2K6B2X2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6VKI4_F6VKI4_MACMU_9544 and tr_A0A2K5XXK1_A0A2K5XXK1_MANLE_9568 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V0RID8_A0A0V0RID8_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V1D914_A0A0V1D914_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V0X1F7_A0A0V0X1F7_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V0VDZ5_A0A0V0VDZ5_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V1LBH3_A0A0V1LBH3_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V0ZFZ3_A0A0V0ZFZ3_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V1P7B9_A0A0V1P7B9_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S7X8_E5S7X8_TRISP_6334 and tr_A0A0V0U3F5_A0A0V0U3F5_9BILA_144512 are exactly identical! WARNING: Sequences tr_E5S865_E5S865_TRISP_6334 and tr_A0A0V1CSQ7_A0A0V1CSQ7_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S865_E5S865_TRISP_6334 and tr_A0A0V0X0Z8_A0A0V0X0Z8_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V0RP25_A0A0V0RP25_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V1CNM8_A0A0V1CNM8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V0WKF4_A0A0V0WKF4_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V0UYB7_A0A0V0UYB7_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V1L9H9_A0A0V1L9H9_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V0ZSQ6_A0A0V0ZSQ6_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V1MES3_A0A0V1MES3_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V1NRA1_A0A0V1NRA1_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V1HK07_A0A0V1HK07_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SUB9_E5SUB9_TRISP_6334 and tr_A0A0V0UBC8_A0A0V0UBC8_9BILA_144512 are exactly identical! WARNING: Sequences tr_H0YSB0_H0YSB0_TAEGU_59729 and tr_A0A218URS7_A0A218URS7_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0Q9X0Z5_A0A0Q9X0Z5_DROWI_7260 and tr_A0A0P8XRN2_A0A0P8XRN2_DROAN_7217 are exactly identical! WARNING: Sequences tr_A0A0Q9X0Z5_A0A0Q9X0Z5_DROWI_7260 and tr_A0A1W4VQ13_A0A1W4VQ13_DROFC_30025 are exactly identical! WARNING: Sequences tr_G0NS19_G0NS19_CAEBE_135651 and tr_E3M5J4_E3M5J4_CAERE_31234 are exactly identical! WARNING: Sequences tr_G0NS19_G0NS19_CAEBE_135651 and tr_A0A261AV69_A0A261AV69_9PELO_1503980 are exactly identical! WARNING: Sequences tr_F7A472_F7A472_XENTR_8364 and tr_A0A1L8GTV0_A0A1L8GTV0_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3MFL2_E3MFL2_CAERE_31234 and tr_A0A261CAA9_A0A261CAA9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A0Q9WFL7_A0A0Q9WFL7_DROVI_7244 and tr_A0A0Q9X8E5_A0A0Q9X8E5_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A0Q9WFL7_A0A0Q9WFL7_DROVI_7244 and tr_A0A0M5J9N2_A0A0M5J9N2_DROBS_30019 are exactly identical! WARNING: Sequences tr_Q16Y75_Q16Y75_AEDAE_7159 and tr_A0A084WJP6_A0A084WJP6_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G1LE59_G1LE59_AILME_9646 and tr_A0A384D636_A0A384D636_URSMA_29073 are exactly identical! WARNING: Sequences tr_U3JJU1_U3JJU1_FICAL_59894 and tr_A0A218USS0_A0A218USS0_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3K2E5_U3K2E5_FICAL_59894 and tr_A0A218VBV5_A0A218VBV5_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3K7B8_U3K7B8_FICAL_59894 and tr_A0A218URG2_A0A218URG2_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A044RCE8_A0A044RCE8_ONCVO_6282 and tr_A0A182EG26_A0A182EG26_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TXI3_A0A044TXI3_ONCVO_6282 and tr_A0A182E149_A0A182E149_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TXI3_A0A044TXI3_ONCVO_6282 and tr_A0A1I7VEP4_A0A1I7VEP4_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A0K0FKS9_A0A0K0FKS9_STRVS_75913 and tr_A0A0N5BNL7_A0A0N5BNL7_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0G473_A0A0K0G473_STRVS_75913 and tr_A0A0K0E7K3_A0A0K0E7K3_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0G473_A0A0K0G473_STRVS_75913 and tr_A0A090MXE5_A0A090MXE5_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0G473_A0A0K0G473_STRVS_75913 and tr_A0A0N5BFX8_A0A0N5BFX8_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A091J6V4_A0A091J6V4_EGRGA_188379 and tr_A0A087QTF6_A0A087QTF6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091J6V4_A0A091J6V4_EGRGA_188379 and tr_A0A091H815_A0A091H815_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J6V4_A0A091J6V4_EGRGA_188379 and tr_A0A091IZC8_A0A091IZC8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091JGC0_A0A091JGC0_EGRGA_188379 and tr_A0A087QX89_A0A087QX89_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JGC0_A0A091JGC0_EGRGA_188379 and tr_A0A093HVM1_A0A093HVM1_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JGC0_A0A091JGC0_EGRGA_188379 and tr_A0A091WIC2_A0A091WIC2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091USW1_A0A091USW1_NIPNI_128390 and tr_A0A093HEX9_A0A093HEX9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091VLL8_A0A091VLL8_NIPNI_128390 and tr_A0A093JMK4_A0A093JMK4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091VLL8_A0A091VLL8_NIPNI_128390 and tr_A0A091XB74_A0A091XB74_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VLL8_A0A091VLL8_NIPNI_128390 and tr_A0A0A0AX79_A0A0A0AX79_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091G9W6_A0A091G9W6_9AVES_55661 and tr_A0A226NHR8_A0A226NHR8_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A2I0LZU5_A0A2I0LZU5_COLLI_8932 and tr_A0A1V4KX74_A0A1V4KX74_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0SEN0_A0A0V0SEN0_9BILA_6336 and tr_A0A0V0VQJ6_A0A0V0VQJ6_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SEN0_A0A0V0SEN0_9BILA_6336 and tr_A0A0V1L465_A0A0V1L465_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SEN0_A0A0V0SEN0_9BILA_6336 and tr_A0A0V1AFV6_A0A0V1AFV6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SEN0_A0A0V0SEN0_9BILA_6336 and tr_A0A0V1PGW1_A0A0V1PGW1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SEN0_A0A0V0SEN0_9BILA_6336 and tr_A0A0V0TWC3_A0A0V0TWC3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1FMV8_A0A0V1FMV8_TRIPS_6337 and tr_A0A0V1MUK8_A0A0V1MUK8_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V1FMV8_A0A0V1FMV8_TRIPS_6337 and tr_A0A0V1HC61_A0A0V1HC61_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3P1X8_A0A1S3P1X8_SALSA_8030 and tr_A0A060X962_A0A060X962_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1V4KA46_A0A1V4KA46_PATFA_372326 and tr_A0A226NV20_A0A226NV20_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MRK9_A0A226MRK9_CALSU_9009 and tr_A0A226NY90_A0A226NY90_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N673_A0A226N673_CALSU_9009 and tr_A0A226P9C7_A0A226P9C7_COLVI_9014 are exactly identical! WARNING: Duplicate sequences found: 223 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471.raxml.reduced.phy Alignment comprises 1 partitions and 354 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 354 Gaps: 2.42 % Invariant sites: 2.82 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/3_mltree/P09471.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 89 / 7120 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -57022.479528 [00:00:00 -57022.479528] Initial branch length optimization [00:00:01 -56912.630376] Model parameter optimization (eps = 0.100000) [00:00:23] Tree #1, final logLikelihood: -56629.484975 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.354155,0.377530) (0.274134,0.484945) (0.241729,1.185893) (0.129983,3.436553) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P09471/4_raxmlng_ancestral/P09471.raxml.log Analysis started: 02-Jun-2021 14:59:07 / finished: 02-Jun-2021 14:59:34 Elapsed time: 27.177 seconds