RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:32:00 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/2_msa/P09467_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/3_mltree/P09467.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647920 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/2_msa/P09467_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 338 sites WARNING: Sequences tr_M3Y5K1_M3Y5K1_MUSPF_9669 and tr_A0A2Y9IIA1_A0A2Y9IIA1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B6QQF9_B6QQF9_TALMQ_441960 and tr_A0A093XTG8_A0A093XTG8_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2VW86_B2VW86_PYRTR_426418 and tr_A0A2W1HQN7_A0A2W1HQN7_9PLEO_45151 are exactly identical! WARNING: Sequences tr_G3QSC2_G3QSC2_GORGO_9595 and tr_A0A2J8WNQ5_A0A2J8WNQ5_PONAB_9601 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_H2QXI1_H2QXI1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_G7PSQ9_G7PSQ9_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_A0A096P259_A0A096P259_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_A0A0D9R237_A0A0D9R237_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_A0A2K5M2P8_A0A2K5M2P8_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_A0A2K6BG54_A0A2K6BG54_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PSS1_H2PSS1_PONAB_9601 and tr_A0A2K5YNE9_A0A2K5YNE9_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q7S6N8_Q7S6N8_NEUCR_367110 and tr_G4V0B9_G4V0B9_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q29K04_Q29K04_DROPS_46245 and tr_B4GKW2_B4GKW2_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8N3B8_B8N3B8_ASPFN_332952 and tr_Q2UJT0_Q2UJT0_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N3B8_B8N3B8_ASPFN_332952 and tr_A0A1S9DLK4_A0A1S9DLK4_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UU13_A0A179UU13_BLAGS_559298 and tr_C5GCP1_C5GCP1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A2J8JHD6_A0A2J8JHD6_PANTR_9598 and tr_A0A2R9CH13_A0A2R9CH13_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0E0FW52_A0A0E0FW52_ORYNI_4536 and sp_A2WXB2_F16P2_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0FW52_A0A0E0FW52_ORYNI_4536 and tr_I1NTN8_I1NTN8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0FW52_A0A0E0FW52_ORYNI_4536 and tr_A0A0E0N5H6_A0A0E0N5H6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0FW52_A0A0E0FW52_ORYNI_4536 and tr_A0A0D3EWP3_A0A0D3EWP3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0FW52_A0A0E0FW52_ORYNI_4536 and tr_A0A0D9YHW4_A0A0D9YHW4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0FW52_A0A0E0FW52_ORYNI_4536 and sp_Q0JHF8_F16P2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and sp_A2XEX2_F16P1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and tr_I1P9U6_I1P9U6_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and tr_A0A0E0CYI4_A0A0E0CYI4_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and tr_A0A0E0NSY3_A0A0E0NSY3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and tr_A0A0D3FGN2_A0A0D3FGN2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and tr_A0A0D9Z552_A0A0D9Z552_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GKD9_A0A0E0GKD9_ORYNI_4536 and sp_O64422_F16P1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HF28_A0A0E0HF28_ORYNI_4536 and tr_A0A0E0PN19_A0A0E0PN19_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HF28_A0A0E0HF28_ORYNI_4536 and tr_A0A0D3G850_A0A0D3G850_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2QIZ8_A2QIZ8_ASPNC_425011 and tr_G3Y9B7_G3Y9B7_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QIZ8_A2QIZ8_ASPNC_425011 and tr_A0A319AGQ3_A0A319AGQ3_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F6YGC3_F6YGC3_MACMU_9544 and tr_A0A096P260_A0A096P260_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6YGC3_F6YGC3_MACMU_9544 and tr_A0A0D9R244_A0A0D9R244_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6YGC3_F6YGC3_MACMU_9544 and tr_A0A2K6B7G0_A0A2K6B7G0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F4P2Z5_F4P2Z5_BATDJ_684364 and tr_A0A177WLB0_A0A177WLB0_BATDE_403673 are exactly identical! WARNING: Sequences tr_G2XNV6_G2XNV6_BOTF4_999810 and tr_M7U6P8_M7U6P8_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_L2G769_L2G769_COLFN_1213859 and tr_T0M3E7_T0M3E7_COLGC_1237896 are exactly identical! WARNING: Sequences tr_M4CS49_M4CS49_BRARP_51351 and tr_A0A078J9M5_A0A078J9M5_BRANA_3708 are exactly identical! WARNING: Sequences tr_U5HDV3_U5HDV3_USTV1_683840 and tr_A0A238F5H3_A0A238F5H3_9BASI_269621 are exactly identical! WARNING: Sequences tr_U5HDV3_U5HDV3_USTV1_683840 and tr_A0A2X0MEF8_A0A2X0MEF8_9BASI_796604 are exactly identical! WARNING: Sequences tr_U5HDV3_U5HDV3_USTV1_683840 and tr_A0A2X0NGS4_A0A2X0NGS4_9BASI_289078 are exactly identical! WARNING: Sequences tr_V2XCQ0_V2XCQ0_MONRO_1381753 and tr_A0A0W0F979_A0A0W0F979_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2Q8U0_W2Q8U0_PHYPN_761204 and tr_A0A0W8DVT5_A0A0W8DVT5_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q8U0_W2Q8U0_PHYPN_761204 and tr_W2NE46_W2NE46_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2Q9N1_W2Q9N1_PHYPN_761204 and tr_W2J3Z3_W2J3Z3_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A1D5VCR6_A0A1D5VCR6_WHEAT_4565 and tr_D8L9K9_D8L9K9_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015JLA3_A0A015JLA3_9GLOM_1432141 and tr_A0A2I1H8S6_A0A2I1H8S6_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JLA3_A0A015JLA3_9GLOM_1432141 and tr_A0A2H5TRL1_A0A2H5TRL1_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067F3F4_A0A067F3F4_CITSI_2711 and tr_A0A2H5PBU8_A0A2H5PBU8_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078J6J2_A0A078J6J2_BRANA_3708 and tr_A0A0D3DKC4_A0A0D3DKC4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094F7V6_A0A094F7V6_9PEZI_1420912 and tr_A0A1B8GDL7_A0A1B8GDL7_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0F0IHL5_A0A0F0IHL5_ASPPU_1403190 and tr_A0A2G7FZG9_A0A2G7FZG9_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0F4GCP6_A0A0F4GCP6_9PEZI_1047168 and tr_A0A1X7RNV5_A0A1X7RNV5_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0A1NJ44_A0A0A1NJ44_9FUNG_58291 and tr_A0A367KB05_A0A367KB05_9FUNG_86630 are exactly identical! WARNING: Sequences tr_W6Y2A1_W6Y2A1_COCCA_930089 and tr_W6ZGF6_W6ZGF6_COCMI_930090 are exactly identical! WARNING: Sequences tr_A0A0V1CFN7_A0A0V1CFN7_TRIBR_45882 and tr_A0A0V0WHG5_A0A0V0WHG5_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CFN7_A0A0V1CFN7_TRIBR_45882 and tr_A0A0V1KTT5_A0A0V1KTT5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CFN7_A0A0V1CFN7_TRIBR_45882 and tr_A0A0V1PEQ8_A0A0V1PEQ8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CFN7_A0A0V1CFN7_TRIBR_45882 and tr_A0A0V0TMP3_A0A0V0TMP3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0P1BAH6_A0A0P1BAH6_9BASI_401625 and tr_A0A316VX26_A0A316VX26_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A100IBW2_A0A100IBW2_ASPNG_5061 and tr_A0A1L9MVS8_A0A1L9MVS8_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A164QSU1_A0A164QSU1_9HOMO_1314777 and tr_A0A166AMD8_A0A166AMD8_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S3ZAM9_A0A1S3ZAM9_TOBAC_4097 and tr_A0A1S4A023_A0A1S4A023_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3ZAM9_A0A1S3ZAM9_TOBAC_4097 and tr_A0A1U7WV18_A0A1U7WV18_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4C719_A0A1S4C719_TOBAC_4097 and tr_A0A1U7XD55_A0A1U7XD55_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CHR0_A0A1S4CHR0_TOBAC_4097 and tr_A0A1U7VL88_A0A1U7VL88_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3KTK8_A0A1S3KTK8_SALSA_8030 and tr_A0A060Y8H0_A0A060Y8H0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B8C2G1_A0A1B8C2G1_9PEZI_1622147 and tr_A0A1B8EL32_A0A1B8EL32_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A1R3RUJ5_A0A1R3RUJ5_ASPC5_602072 and tr_A0A317WLT2_A0A317WLT2_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1V8U1U9_A0A1V8U1U9_9PEZI_1974281 and tr_A0A1V8TIE8_A0A1V8TIE8_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8U1U9_A0A1V8U1U9_9PEZI_1974281 and tr_A0A1V8TQ45_A0A1V8TQ45_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A226MIB7_A0A226MIB7_CALSU_9009 and tr_A0A226PKS7_A0A226PKS7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MIC5_A0A226MIC5_CALSU_9009 and tr_A0A226PJ45_A0A226PJ45_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3DNP7_A0A2H3DNP7_ARMGA_47427 and tr_A0A2H3CA09_A0A2H3CA09_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3DNP7_A0A2H3DNP7_ARMGA_47427 and tr_A0A284QVA3_A0A284QVA3_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A1U8EG73_A0A1U8EG73_CAPAN_4072 and tr_A0A2G3BKU5_A0A2G3BKU5_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2ZPT4_A0A2G2ZPT4_CAPAN_4072 and tr_A0A2G3CN06_A0A2G3CN06_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2S7PN52_A0A2S7PN52_9HELO_2070414 and tr_A0A2S7R462_A0A2S7R462_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2V5IJT0_A0A2V5IJT0_9EURO_1450541 and tr_A0A2V5IEP3_A0A2V5IEP3_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 82 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467.raxml.reduced.phy Alignment comprises 1 partitions and 338 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 338 Gaps: 2.88 % Invariant sites: 1.48 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/3_mltree/P09467.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 85 / 6800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -109379.478421 [00:00:00 -109379.478421] Initial branch length optimization [00:00:00 -109116.778968] Model parameter optimization (eps = 0.100000) [00:00:23] Tree #1, final logLikelihood: -108736.503226 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.241083,0.325804) (0.377331,0.439535) (0.184314,1.090348) (0.197272,2.811532) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P09467/4_raxmlng_ancestral/P09467.raxml.log Analysis started: 02-Jun-2021 18:32:00 / finished: 02-Jun-2021 18:32:27 Elapsed time: 26.525 seconds Consumed energy: 1.709 Wh