RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jun-2021 23:50:18 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/2_msa/P07741_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/2_msa/P07741_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 164 sites WARNING: Sequences tr_A0A0E1RVN6_A0A0E1RVN6_COCIM_246410 and tr_E9DHQ2_E9DHQ2_COCPS_443226 are exactly identical! WARNING: Sequences tr_A0A0E1RVN6_A0A0E1RVN6_COCIM_246410 and tr_A0A0J6YGV7_A0A0J6YGV7_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QV11_B6QV11_TALMQ_441960 and tr_A0A093XGL7_A0A093XGL7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_D8R0M7_D8R0M7_SELML_88036 and tr_D8T1L7_D8T1L7_SELML_88036 are exactly identical! WARNING: Sequences tr_G2X8E1_G2X8E1_VERDV_498257 and tr_A0A0G4MC74_A0A0G4MC74_9PEZI_100787 are exactly identical! WARNING: Sequences tr_B8NJ30_B8NJ30_ASPFN_332952 and tr_Q2U242_Q2U242_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NJ30_B8NJ30_ASPFN_332952 and tr_A0A0L1JEX9_A0A0L1JEX9_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_B8NJ30_B8NJ30_ASPFN_332952 and tr_A0A1F7ZUU2_A0A1F7ZUU2_9EURO_109264 are exactly identical! WARNING: Sequences tr_B8NJ30_B8NJ30_ASPFN_332952 and tr_A0A1S9DIM3_A0A1S9DIM3_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UW52_A0A179UW52_BLAGS_559298 and tr_A0A179TZ48_A0A179TZ48_AJEDR_559297 are exactly identical! WARNING: Sequences tr_H2QBQ7_H2QBQ7_PANTR_9598 and sp_P07741_APT_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QBQ7_H2QBQ7_PANTR_9598 and tr_A0A2R8ZCU3_A0A2R8ZCU3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_W7LCY3_W7LCY3_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_A0A0D2XAY6_A0A0D2XAY6_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_S0DNA3_S0DNA3_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_N4TE29_N4TE29_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_X0DPQ0_X0DPQ0_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_A0A2H3T820_A0A2H3T820_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9F1U3_F9F1U3_FUSOF_660025 and tr_A0A2H3I1S9_A0A2H3I1S9_FUSOX_327505 are exactly identical! WARNING: Sequences tr_E9F5A2_E9F5A2_METRA_655844 and tr_E9EC99_E9EC99_METAQ_655827 are exactly identical! WARNING: Sequences tr_E9F5A2_E9F5A2_METRA_655844 and tr_A0A0B4IGA0_A0A0B4IGA0_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9F5A2_E9F5A2_METRA_655844 and tr_A0A0D9NPC1_A0A0D9NPC1_METAN_1291518 are exactly identical! WARNING: Sequences tr_Q4WAS3_Q4WAS3_ASPFU_330879 and tr_A1D9B0_A1D9B0_NEOFI_331117 are exactly identical! WARNING: Sequences tr_C6HN53_C6HN53_AJECH_544712 and tr_F0UEX2_F0UEX2_AJEC8_544711 are exactly identical! WARNING: Sequences tr_J4KQM3_J4KQM3_BEAB2_655819 and tr_A0A2N6NT69_A0A2N6NT69_BEABA_176275 are exactly identical! WARNING: Sequences tr_K3Z963_K3Z963_SETIT_4555 and tr_A0A2T7EIL9_A0A2T7EIL9_9POAL_1504633 are exactly identical! WARNING: Sequences sp_Q9LFP0_APT5_ARATH_3702 and tr_D7M3M7_D7M3M7_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9SUW2_APT3_ARATH_3702 and tr_D7ME28_D7ME28_ARALL_81972 are exactly identical! WARNING: Sequences tr_A0A0E0H2V6_A0A0E0H2V6_ORYNI_4536 and tr_A0A0E0DFU6_A0A0E0DFU6_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0H2V6_A0A0E0H2V6_ORYNI_4536 and tr_A0A0E0PB92_A0A0E0PB92_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0H2V6_A0A0E0H2V6_ORYNI_4536 and tr_A0A0D3FXN5_A0A0D3FXN5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0H2V6_A0A0E0H2V6_ORYNI_4536 and tr_A0A0D9ZMU5_A0A0D9ZMU5_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HRR5_A0A0E0HRR5_ORYNI_4536 and tr_A0A0E0NHQ7_A0A0E0NHQ7_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0K0IZE9_A0A0K0IZE9_BRUMA_6279 and tr_A0A0R3QRL0_A0A0R3QRL0_9BILA_42155 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_G7XW05_G7XW05_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_G3XV06_G3XV06_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_A0A100IS96_A0A100IS96_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_A0A146EYA3_A0A146EYA3_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_A0A1L9NHG8_A0A1L9NHG8_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_A0A317UP03_A0A317UP03_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2QY81_A2QY81_ASPNC_425011 and tr_A0A319A152_A0A319A152_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A2XVA4_A2XVA4_ORYSI_39946 and tr_I1PMT1_I1PMT1_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2ZM75_A2ZM75_ORYSI_39946 and tr_I1R7I5_I1R7I5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2ZM75_A2ZM75_ORYSI_39946 and tr_A0A0E0RJD9_A0A0E0RJD9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2ZM75_A2ZM75_ORYSI_39946 and tr_A0A0D3HW91_A0A0D3HW91_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2ZM75_A2ZM75_ORYSI_39946 and tr_A0A0E0B0J1_A0A0E0B0J1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2ZM96_A2ZM96_ORYSI_39946 and tr_A0A0E0RJG2_A0A0E0RJG2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2ZM96_A2ZM96_ORYSI_39946 and tr_Q2QMT1_Q2QMT1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4P449_F4P449_BATDJ_684364 and tr_A0A177WHN9_A0A177WHN9_BATDE_403673 are exactly identical! WARNING: Sequences tr_E6RC06_E6RC06_CRYGW_367775 and tr_A0A095CLI7_A0A095CLI7_CRYGR_294750 are exactly identical! WARNING: Sequences tr_A0A0E0EB85_A0A0E0EB85_9ORYZ_40149 and tr_A0A0E0Q8B1_A0A0E0Q8B1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0EB85_A0A0E0EB85_9ORYZ_40149 and tr_Q8H534_Q8H534_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F9WXD2_F9WXD2_ZYMTI_336722 and tr_A0A1X7RBR6_A0A1X7RBR6_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G2YXK1_G2YXK1_BOTF4_999810 and tr_M7TJX1_M7TJX1_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F2SU94_F2SU94_TRIRC_559305 and tr_D4AK53_D4AK53_ARTBC_663331 are exactly identical! WARNING: Sequences tr_F2SU94_F2SU94_TRIRC_559305 and tr_A0A059JGG8_A0A059JGG8_9EURO_1215338 are exactly identical! WARNING: Sequences tr_F2SU94_F2SU94_TRIRC_559305 and tr_A0A178F6P0_A0A178F6P0_TRIRU_5551 are exactly identical! WARNING: Sequences tr_B3RVF1_B3RVF1_TRIAD_10228 and tr_A0A369SKI8_A0A369SKI8_9METZ_287889 are exactly identical! WARNING: Sequences tr_K9G4R7_K9G4R7_PEND2_1170229 and tr_A0A0A2JNN5_A0A0A2JNN5_PENEN_27334 are exactly identical! WARNING: Sequences tr_K9G4R7_K9G4R7_PEND2_1170229 and tr_A0A0M8P534_A0A0M8P534_9EURO_229535 are exactly identical! WARNING: Sequences tr_K9G4R7_K9G4R7_PEND2_1170229 and tr_A0A0G4PU04_A0A0G4PU04_PENCA_1429867 are exactly identical! WARNING: Sequences tr_M4D384_M4D384_BRARP_51351 and tr_A0A0D3BIE5_A0A0D3BIE5_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4EVJ6_M4EVJ6_BRARP_51351 and tr_A0A078GR38_A0A078GR38_BRANA_3708 are exactly identical! WARNING: Sequences tr_U5H9N3_U5H9N3_USTV1_683840 and tr_A0A2X0LRQ1_A0A2X0LRQ1_9BASI_796604 are exactly identical! WARNING: Sequences tr_V2XV75_V2XV75_MONRO_1381753 and tr_A0A0W0FCI2_A0A0W0FCI2_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A3B6KD88_A0A3B6KD88_WHEAT_4565 and tr_A0A3B6LH31_A0A3B6LH31_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6KD88_A0A3B6KD88_WHEAT_4565 and tr_A0A3B6MKA5_A0A3B6MKA5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6KD88_A0A3B6KD88_WHEAT_4565 and sp_Q43199_APT1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A010R179_A0A010R179_9PEZI_1445577 and tr_A0A135U0U5_A0A135U0U5_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_A0A015K5W0_A0A015K5W0_9GLOM_1432141 and tr_U9TNU5_U9TNU5_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A0D3GR09_A0A0D3GR09_9ORYZ_65489 and tr_A0A0E0AJR0_A0A0E0AJR0_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A084QIV3_A0A084QIV3_STAC4_1283841 and tr_A0A084RR29_A0A084RR29_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A078IJ84_A0A078IJ84_BRANA_3708 and tr_A0A0D3AIJ4_A0A0D3AIJ4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078J017_A0A078J017_BRANA_3708 and tr_A0A0D3CE12_A0A0D3CE12_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078J6H8_A0A078J6H8_BRANA_3708 and tr_A0A0D3D234_A0A0D3D234_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0A0LQA3_A0A0A0LQA3_CUCSA_3659 and tr_A0A1S3BBQ4_A0A1S3BBQ4_CUCME_3656 are exactly identical! WARNING: Sequences tr_V4TUL4_V4TUL4_9ROSI_85681 and tr_A0A2H5NTP6_A0A2H5NTP6_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2R683_A0A0D2R683_GOSRA_29730 and tr_A0A1U8IYN1_A0A1U8IYN1_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2R683_A0A0D2R683_GOSRA_29730 and tr_A0A1U8PV04_A0A1U8PV04_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RZS0_A0A0D2RZS0_GOSRA_29730 and tr_A0A1U8JFB6_A0A1U8JFB6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2UH55_A0A0D2UH55_GOSRA_29730 and tr_A0A1U8JME9_A0A1U8JME9_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8WQB5_A0A0F8WQB5_9EURO_308745 and tr_A0A2T5M0Z3_A0A2T5M0Z3_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0S7DJE7_A0A0S7DJE7_9EURO_293939 and tr_A0A2I1BY40_A0A2I1BY40_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A0L9UGY8_A0A0L9UGY8_PHAAN_3914 and tr_A0A1S3U138_A0A1S3U138_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0C9M710_A0A0C9M710_9FUNG_91626 and tr_A0A162NR22_A0A162NR22_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A101MDK1_A0A101MDK1_9EURO_48697 and tr_A0A1V6ND28_A0A1V6ND28_9EURO_60169 are exactly identical! WARNING: Sequences tr_V6QVH8_V6QVH8_GIBZE_229533 and tr_A0A2T4H9W9_A0A2T4H9W9_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A164ZRG1_A0A164ZRG1_9HOMO_1314777 and tr_A0A166BW17_A0A166BW17_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S3XDL9_A0A1S3XDL9_TOBAC_4097 and tr_A0A1U7XBD8_A0A1U7XBD8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1B8B354_A0A1B8B354_FUSPO_36050 and tr_A0A366S2D7_A0A366S2D7_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_A0A1F5L980_A0A1F5L980_9EURO_1835702 and tr_A0A1V6Q191_A0A1V6Q191_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1L9Q4J9_A0A1L9Q4J9_ASPVE_1036611 and tr_A0A1L9T3P2_A0A1L9T3P2_9EURO_1036612 are exactly identical! WARNING: Sequences tr_A0A1L9WJ32_A0A1L9WJ32_ASPAC_690307 and tr_A0A319E7A1_A0A319E7A1_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WJ32_A0A1L9WJ32_ASPAC_690307 and tr_A0A2V5IVL9_A0A2V5IVL9_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WJ32_A0A1L9WJ32_ASPAC_690307 and tr_A0A2V5HY14_A0A2V5HY14_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3R6J9_A0A1R3R6J9_ASPC5_602072 and tr_A0A317VX37_A0A317VX37_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A2H3IQ99_A0A2H3IQ99_9EURO_290292 and tr_A0A364KUD2_A0A364KUD2_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2G5H8H4_A0A2G5H8H4_CERBT_122368 and tr_A0A2S6CFB4_A0A2S6CFB4_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2P5EWG5_A0A2P5EWG5_TREOI_63057 and tr_A0A2P5DDI1_A0A2P5DDI1_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2P5EZY8_A0A2P5EZY8_TREOI_63057 and tr_A0A2P5BZN8_A0A2P5BZN8_PARAD_3476 are exactly identical! WARNING: Duplicate sequences found: 100 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741.raxml.reduced.phy Alignment comprises 1 partitions and 164 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 164 / 164 Gaps: 0.81 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 164 / 13120 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -254584.238550] Initial branch length optimization [00:00:04 -215673.755128] Model parameter optimization (eps = 10.000000) [00:00:59 -215114.979361] AUTODETECT spr round 1 (radius: 5) [00:03:41 -149203.268099] AUTODETECT spr round 2 (radius: 10) [00:06:48 -116442.792792] AUTODETECT spr round 3 (radius: 15) [00:10:09 -100117.474222] AUTODETECT spr round 4 (radius: 20) [00:13:56 -89453.594036] AUTODETECT spr round 5 (radius: 25) [00:17:53 -84640.286284] SPR radius for FAST iterations: 25 (autodetect) [00:17:53 -84640.286284] Model parameter optimization (eps = 3.000000) [00:18:15 -84597.771069] FAST spr round 1 (radius: 25) [00:21:30 -71755.847623] FAST spr round 2 (radius: 25) [00:23:54 -70655.243397] FAST spr round 3 (radius: 25) [00:26:06 -70539.519182] FAST spr round 4 (radius: 25) [00:28:09 -70510.806182] FAST spr round 5 (radius: 25) [00:30:04 -70506.768269] FAST spr round 6 (radius: 25) [00:31:55 -70506.470788] FAST spr round 7 (radius: 25) [00:33:47 -70504.837404] FAST spr round 8 (radius: 25) [00:35:39 -70500.295528] FAST spr round 9 (radius: 25) [00:37:29 -70500.293771] Model parameter optimization (eps = 1.000000) [00:37:50 -70488.032197] SLOW spr round 1 (radius: 5) [00:40:30 -70451.464314] SLOW spr round 2 (radius: 5) [00:43:03 -70444.368144] SLOW spr round 3 (radius: 5) [00:45:29 -70442.610323] SLOW spr round 4 (radius: 5) [00:47:51 -70442.610228] SLOW spr round 5 (radius: 10) [00:50:25 -70440.095735] SLOW spr round 6 (radius: 5) [00:53:32 -70438.436332] SLOW spr round 7 (radius: 5) [00:56:14 -70438.436268] SLOW spr round 8 (radius: 10) [00:58:45 -70436.174783] SLOW spr round 9 (radius: 5) [01:01:46 -70434.286446] SLOW spr round 10 (radius: 5) [01:04:27 -70434.286443] SLOW spr round 11 (radius: 10) [01:06:58 -70432.593323] SLOW spr round 12 (radius: 5) [01:09:58 -70432.254532] SLOW spr round 13 (radius: 5) [01:12:38 -70432.254334] SLOW spr round 14 (radius: 10) [01:15:07 -70431.821273] SLOW spr round 15 (radius: 5) [01:18:07 -70431.821248] SLOW spr round 16 (radius: 10) [01:20:46 -70431.499940] SLOW spr round 17 (radius: 5) [01:23:43 -70431.499691] SLOW spr round 18 (radius: 10) [01:26:21 -70431.499690] SLOW spr round 19 (radius: 15) [01:29:59 -70427.522832] SLOW spr round 20 (radius: 5) [01:33:07 -70427.522831] SLOW spr round 21 (radius: 10) [01:35:54 -70427.522831] SLOW spr round 22 (radius: 15) [01:39:26 -70427.522831] SLOW spr round 23 (radius: 20) [01:41:54] [worker #1] ML tree search #2, logLikelihood: -70466.503677 [01:44:33 -70427.522831] SLOW spr round 24 (radius: 25) [01:48:18] [worker #2] ML tree search #3, logLikelihood: -70485.195587 [01:50:34 -70427.522831] Model parameter optimization (eps = 0.100000) [01:50:41] [worker #0] ML tree search #1, logLikelihood: -70427.441014 [01:50:41 -257250.152887] Initial branch length optimization [01:50:45 -217948.253090] Model parameter optimization (eps = 10.000000) [01:51:20 -217358.501702] AUTODETECT spr round 1 (radius: 5) [01:54:04 -149920.107456] AUTODETECT spr round 2 (radius: 10) [01:57:10 -117454.241102] AUTODETECT spr round 3 (radius: 15) [02:00:16 -103424.051798] AUTODETECT spr round 4 (radius: 20) [02:03:51 -92653.996642] AUTODETECT spr round 5 (radius: 25) [02:07:41 -86354.489918] SPR radius for FAST iterations: 25 (autodetect) [02:07:41 -86354.489918] Model parameter optimization (eps = 3.000000) [02:08:04 -86317.567547] FAST spr round 1 (radius: 25) [02:11:26 -71296.199749] FAST spr round 2 (radius: 25) [02:13:55 -70595.533235] FAST spr round 3 (radius: 25) [02:16:08 -70539.098739] FAST spr round 4 (radius: 25) [02:18:13 -70518.610144] FAST spr round 5 (radius: 25) [02:20:04 -70518.610104] Model parameter optimization (eps = 1.000000) [02:20:18 -70516.253559] SLOW spr round 1 (radius: 5) [02:23:02 -70498.213167] SLOW spr round 2 (radius: 5) [02:25:40 -70491.495638] SLOW spr round 3 (radius: 5) [02:28:03 -70490.503849] SLOW spr round 4 (radius: 5) [02:30:25 -70490.503671] SLOW spr round 5 (radius: 10) [02:32:51 -70489.499655] SLOW spr round 6 (radius: 5) [02:35:49 -70489.499506] SLOW spr round 7 (radius: 10) [02:38:33 -70486.888932] SLOW spr round 8 (radius: 5) [02:41:32 -70483.333628] SLOW spr round 9 (radius: 5) [02:44:11 -70482.249258] SLOW spr round 10 (radius: 5) [02:46:39 -70480.591528] SLOW spr round 11 (radius: 5) [02:49:03 -70480.591475] SLOW spr round 12 (radius: 10) [02:51:31 -70479.263755] SLOW spr round 13 (radius: 5) [02:54:33 -70475.321289] SLOW spr round 14 (radius: 5) [02:57:11 -70475.321084] SLOW spr round 15 (radius: 10) [02:59:20] [worker #2] ML tree search #6, logLikelihood: -70487.130552 [02:59:42 -70475.207193] SLOW spr round 16 (radius: 5) [03:02:40 -70473.562259] SLOW spr round 17 (radius: 5) [03:05:18 -70473.562158] SLOW spr round 18 (radius: 10) [03:07:48 -70473.562154] SLOW spr round 19 (radius: 15) [03:11:34 -70473.562153] SLOW spr round 20 (radius: 20) [03:16:40 -70473.562153] SLOW spr round 21 (radius: 25) [03:22:44 -70473.562153] Model parameter optimization (eps = 0.100000) [03:22:50] [worker #0] ML tree search #4, logLikelihood: -70473.539168 [03:22:50 -255783.933050] Initial branch length optimization [03:22:54 -216979.843017] Model parameter optimization (eps = 10.000000) [03:23:32 -216483.601120] AUTODETECT spr round 1 (radius: 5) [03:26:12 -147793.378744] AUTODETECT spr round 2 (radius: 10) [03:29:14 -113692.934564] AUTODETECT spr round 3 (radius: 15) [03:32:15 -96984.995448] AUTODETECT spr round 4 (radius: 20) [03:35:41 -85322.048648] AUTODETECT spr round 5 (radius: 25) [03:39:55 -83717.962736] SPR radius for FAST iterations: 25 (autodetect) [03:39:55 -83717.962736] Model parameter optimization (eps = 3.000000) [03:40:19 -83677.122283] FAST spr round 1 (radius: 25) [03:43:39 -71251.891935] FAST spr round 2 (radius: 25) [03:44:28] [worker #1] ML tree search #5, logLikelihood: -70462.257197 [03:46:11 -70625.491571] FAST spr round 3 (radius: 25) [03:48:28 -70539.856830] FAST spr round 4 (radius: 25) [03:50:30 -70535.315884] FAST spr round 5 (radius: 25) [03:52:25 -70533.452746] FAST spr round 6 (radius: 25) [03:54:16 -70533.452609] Model parameter optimization (eps = 1.000000) [03:54:30 -70531.131563] SLOW spr round 1 (radius: 5) [03:57:14 -70499.573623] SLOW spr round 2 (radius: 5) [03:59:50 -70493.804572] SLOW spr round 3 (radius: 5) [04:02:17 -70493.067127] SLOW spr round 4 (radius: 5) [04:04:42 -70493.067121] SLOW spr round 5 (radius: 10) [04:07:12 -70484.908102] SLOW spr round 6 (radius: 5) [04:10:23 -70481.565758] SLOW spr round 7 (radius: 5) [04:13:08 -70481.565735] SLOW spr round 8 (radius: 10) [04:15:41 -70481.565735] SLOW spr round 9 (radius: 15) [04:17:47] [worker #2] ML tree search #9, logLikelihood: -70480.070617 [04:19:41 -70481.565735] SLOW spr round 10 (radius: 20) [04:25:15 -70481.565735] SLOW spr round 11 (radius: 25) [04:32:23 -70481.565735] Model parameter optimization (eps = 0.100000) [04:32:32] [worker #0] ML tree search #7, logLikelihood: -70481.527991 [04:32:32 -257214.405750] Initial branch length optimization [04:32:37 -217779.661920] Model parameter optimization (eps = 10.000000) [04:33:19 -217177.752071] AUTODETECT spr round 1 (radius: 5) [04:36:03 -149210.955561] AUTODETECT spr round 2 (radius: 10) [04:39:10 -115343.411415] AUTODETECT spr round 3 (radius: 15) [04:42:19 -97457.492698] AUTODETECT spr round 4 (radius: 20) [04:46:01 -89981.165275] AUTODETECT spr round 5 (radius: 25) [04:49:52 -85786.606139] SPR radius for FAST iterations: 25 (autodetect) [04:49:52 -85786.606139] Model parameter optimization (eps = 3.000000) [04:50:19 -85744.448921] FAST spr round 1 (radius: 25) [04:53:43 -71178.789349] FAST spr round 2 (radius: 25) [04:56:13 -70629.133563] FAST spr round 3 (radius: 25) [04:58:28 -70523.811954] FAST spr round 4 (radius: 25) [05:00:32 -70504.689579] FAST spr round 5 (radius: 25) [05:02:25 -70503.917927] FAST spr round 6 (radius: 25) [05:04:15 -70503.917817] Model parameter optimization (eps = 1.000000) [05:04:24 -70503.109415] SLOW spr round 1 (radius: 5) [05:07:01 -70474.822921] SLOW spr round 2 (radius: 5) [05:09:33 -70470.203821] SLOW spr round 3 (radius: 5) [05:11:55 -70470.201951] SLOW spr round 4 (radius: 10) [05:14:24 -70467.729871] SLOW spr round 5 (radius: 5) [05:17:27 -70462.674337] SLOW spr round 6 (radius: 5) [05:20:09 -70462.255925] SLOW spr round 7 (radius: 5) [05:21:04] [worker #2] ML tree search #12, logLikelihood: -70476.884829 [05:22:38 -70462.255869] SLOW spr round 8 (radius: 10) [05:25:07 -70461.040892] SLOW spr round 9 (radius: 5) [05:28:08 -70460.725889] SLOW spr round 10 (radius: 5) [05:30:46 -70460.725762] SLOW spr round 11 (radius: 10) [05:32:24] [worker #1] ML tree search #8, logLikelihood: -70445.255615 [05:33:16 -70460.725762] SLOW spr round 12 (radius: 15) [05:37:05 -70460.725762] SLOW spr round 13 (radius: 20) [05:42:08 -70460.725762] SLOW spr round 14 (radius: 25) [05:48:21 -70460.725762] Model parameter optimization (eps = 0.100000) [05:48:28] [worker #0] ML tree search #10, logLikelihood: -70460.699574 [05:48:28 -255199.842627] Initial branch length optimization [05:48:32 -216611.427180] Model parameter optimization (eps = 10.000000) [05:49:05 -216080.553853] AUTODETECT spr round 1 (radius: 5) [05:51:45 -147208.437864] AUTODETECT spr round 2 (radius: 10) [05:54:42 -115636.188118] AUTODETECT spr round 3 (radius: 15) [05:57:52 -99278.211080] AUTODETECT spr round 4 (radius: 20) [06:01:35 -88707.861973] AUTODETECT spr round 5 (radius: 25) [06:05:51 -85946.413087] SPR radius for FAST iterations: 25 (autodetect) [06:05:51 -85946.413087] Model parameter optimization (eps = 3.000000) [06:06:14 -85922.253334] FAST spr round 1 (radius: 25) [06:09:39 -71254.599844] FAST spr round 2 (radius: 25) [06:12:07 -70573.630040] FAST spr round 3 (radius: 25) [06:14:20 -70520.514424] FAST spr round 4 (radius: 25) [06:16:19 -70514.308677] FAST spr round 5 (radius: 25) [06:18:11 -70509.803888] FAST spr round 6 (radius: 25) [06:20:00 -70509.803814] Model parameter optimization (eps = 1.000000) [06:20:16 -70500.530754] SLOW spr round 1 (radius: 5) [06:22:52 -70475.790349] SLOW spr round 2 (radius: 5) [06:25:21 -70473.593938] SLOW spr round 3 (radius: 5) [06:27:42 -70473.593905] SLOW spr round 4 (radius: 10) [06:30:02 -70473.562944] SLOW spr round 5 (radius: 15) [06:33:45 -70473.385255] SLOW spr round 6 (radius: 5) [06:36:47 -70473.385212] SLOW spr round 7 (radius: 10) [06:39:29 -70473.385211] SLOW spr round 8 (radius: 15) [06:42:54 -70473.385211] SLOW spr round 9 (radius: 20) [06:45:57] [worker #2] ML tree search #15, logLikelihood: -70460.128711 [06:47:40 -70473.385211] SLOW spr round 10 (radius: 25) [06:53:41 -70473.385211] Model parameter optimization (eps = 0.100000) [06:53:46] [worker #0] ML tree search #13, logLikelihood: -70473.379939 [06:53:46 -259894.502987] Initial branch length optimization [06:53:50 -219899.962477] Model parameter optimization (eps = 10.000000) [06:54:21 -219443.818395] AUTODETECT spr round 1 (radius: 5) [06:57:02 -148835.575644] AUTODETECT spr round 2 (radius: 10) [07:00:05 -111828.769122] AUTODETECT spr round 3 (radius: 15) [07:03:10 -94732.829303] AUTODETECT spr round 4 (radius: 20) [07:03:14] [worker #1] ML tree search #11, logLikelihood: -70484.703867 [07:06:38 -85127.235707] AUTODETECT spr round 5 (radius: 25) [07:10:47 -82402.063638] SPR radius for FAST iterations: 25 (autodetect) [07:10:48 -82402.063638] Model parameter optimization (eps = 3.000000) [07:11:10 -82373.658845] FAST spr round 1 (radius: 25) [07:14:22 -71362.893343] FAST spr round 2 (radius: 25) [07:16:48 -70606.924970] FAST spr round 3 (radius: 25) [07:18:55 -70538.887253] FAST spr round 4 (radius: 25) [07:20:53 -70522.234777] FAST spr round 5 (radius: 25) [07:22:44 -70520.493722] FAST spr round 6 (radius: 25) [07:24:33 -70520.493458] Model parameter optimization (eps = 1.000000) [07:24:52 -70514.793708] SLOW spr round 1 (radius: 5) [07:27:26 -70485.040990] SLOW spr round 2 (radius: 5) [07:29:56 -70478.011446] SLOW spr round 3 (radius: 5) [07:32:17 -70478.009354] SLOW spr round 4 (radius: 10) [07:34:41 -70466.107474] SLOW spr round 5 (radius: 5) [07:37:44 -70458.595484] SLOW spr round 6 (radius: 5) [07:40:25 -70458.139228] SLOW spr round 7 (radius: 5) [07:42:54 -70458.139042] SLOW spr round 8 (radius: 10) [07:45:18 -70455.918629] SLOW spr round 9 (radius: 5) [07:48:14 -70455.918007] SLOW spr round 10 (radius: 10) [07:50:50 -70455.854455] SLOW spr round 11 (radius: 15) [07:54:20 -70455.854410] SLOW spr round 12 (radius: 20) [07:56:38] [worker #1] ML tree search #14, logLikelihood: -70482.978378 [07:59:15 -70455.854409] SLOW spr round 13 (radius: 25) [08:04:58 -70455.854409] Model parameter optimization (eps = 0.100000) [08:05:10] [worker #0] ML tree search #16, logLikelihood: -70455.650870 [08:05:10 -257537.475143] Initial branch length optimization [08:05:15 -217911.452085] Model parameter optimization (eps = 10.000000) [08:05:59 -217287.892966] AUTODETECT spr round 1 (radius: 5) [08:08:44 -149636.714625] AUTODETECT spr round 2 (radius: 10) [08:11:48 -117025.093555] AUTODETECT spr round 3 (radius: 15) [08:13:22] [worker #2] ML tree search #18, logLikelihood: -70443.573926 [08:15:00 -97448.626158] AUTODETECT spr round 4 (radius: 20) [08:18:35 -85655.781194] AUTODETECT spr round 5 (radius: 25) [08:22:18 -83017.535000] SPR radius for FAST iterations: 25 (autodetect) [08:22:18 -83017.535000] Model parameter optimization (eps = 3.000000) [08:22:43 -82966.395139] FAST spr round 1 (radius: 25) [08:25:59 -71171.237267] FAST spr round 2 (radius: 25) [08:28:28 -70607.383396] FAST spr round 3 (radius: 25) [08:30:41 -70535.139058] FAST spr round 4 (radius: 25) [08:32:44 -70513.286764] FAST spr round 5 (radius: 25) [08:34:36 -70510.590791] FAST spr round 6 (radius: 25) [08:36:25 -70510.590504] Model parameter optimization (eps = 1.000000) [08:36:41 -70504.981429] SLOW spr round 1 (radius: 5) [08:39:17 -70485.022858] SLOW spr round 2 (radius: 5) [08:41:49 -70480.434614] SLOW spr round 3 (radius: 5) [08:44:16 -70478.161615] SLOW spr round 4 (radius: 5) [08:46:39 -70478.158567] SLOW spr round 5 (radius: 10) [08:49:04 -70478.157912] SLOW spr round 6 (radius: 15) [08:53:02 -70478.157772] SLOW spr round 7 (radius: 20) [08:57:58 -70476.821567] SLOW spr round 8 (radius: 5) [09:01:08 -70476.821552] SLOW spr round 9 (radius: 10) [09:01:54] [worker #1] ML tree search #17, logLikelihood: -70480.286176 [09:04:04 -70476.646102] SLOW spr round 10 (radius: 5) [09:06:58 -70475.059199] SLOW spr round 11 (radius: 5) [09:09:33 -70475.058418] SLOW spr round 12 (radius: 10) [09:12:02 -70475.058394] SLOW spr round 13 (radius: 15) [09:15:50 -70475.058393] SLOW spr round 14 (radius: 20) [09:20:48 -70475.058393] SLOW spr round 15 (radius: 25) [09:26:43 -70475.058393] Model parameter optimization (eps = 0.100000) [09:26:50] [worker #0] ML tree search #19, logLikelihood: -70475.013388 [10:50:06] [worker #1] ML tree search #20, logLikelihood: -70442.864098 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.151207,0.340383) (0.374105,0.454295) (0.316297,1.160875) (0.158390,2.597355) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -70427.441014 AIC score: 144864.882029 / AICc score: 8188924.882029 / BIC score: 151080.114216 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=164). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P07741/3_mltree/P07741.raxml.log Analysis started: 17-Jun-2021 23:50:18 / finished: 18-Jun-2021 10:40:25 Elapsed time: 39007.024 seconds