RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:30:31 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/2_msa/P06276_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/3_mltree/P06276.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676631 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/2_msa/P06276_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 602 sites WARNING: Sequences tr_D3WGL4_D3WGL4_CHICK_9031 and tr_U3IQR9_U3IQR9_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q99K10_NLGN1_MOUSE_10090 and sp_Q62765_NLGN1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XPT3_M3XPT3_MUSPF_9669 and tr_A0A2Y9KKJ2_A0A2Y9KKJ2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y017_M3Y017_MUSPF_9669 and tr_G1P8A4_G1P8A4_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Y017_M3Y017_MUSPF_9669 and tr_G1TYL9_G1TYL9_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Y017_M3Y017_MUSPF_9669 and tr_G1MC29_G1MC29_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_G3RBW3_G3RBW3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_H2PVY8_H2PVY8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_A0A2I3RYY1_A0A2I3RYY1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_G7NRV3_G7NRV3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_A0A0D9RG79_A0A0D9RG79_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_A0A2K5MHG7_A0A2K5MHG7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_A0A2K6DL61_A0A2K6DL61_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_A0A2K5YQ23_A0A2K5YQ23_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H6M2_A0A2I3H6M2_NOMLE_61853 and tr_A0A2R9A7T8_A0A2R9A7T8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HLL4_A0A2I3HLL4_NOMLE_61853 and tr_H2PUU5_H2PUU5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3I7K0_G3I7K0_CRIGR_10029 and tr_A0A1U8CN00_A0A1U8CN00_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QGN3_G3QGN3_GORGO_9595 and tr_A0A2J8Q8V8_A0A2J8Q8V8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QGN3_G3QGN3_GORGO_9595 and tr_A0A2R9B1H5_A0A2R9B1H5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_H2PC23_H2PC23_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_A0A2J8L771_A0A2J8L771_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_F6RUI6_F6RUI6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_U3FSR0_U3FSR0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_G7NZE2_G7NZE2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_A0A096N102_A0A096N102_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_A0A2K5L7H3_A0A2K5L7H3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_A0A2K6CTK8_A0A2K6CTK8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_A0A2K5XCK1_A0A2K5XCK1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QNJ3_G3QNJ3_GORGO_9595 and tr_A0A2R9A9V3_A0A2R9A9V3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SGG6_G3SGG6_GORGO_9595 and sp_Q8N0W4_NLGNX_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SGG6_G3SGG6_GORGO_9595 and tr_A0A2R8ZT88_A0A2R8ZT88_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1SP52_G1SP52_RABIT_9986 and tr_F6X0I7_F6X0I7_HORSE_9796 are exactly identical! WARNING: Sequences tr_H2R9S9_H2R9S9_PANTR_9598 and sp_Q8NFZ4_NLGN2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R9S9_H2R9S9_PANTR_9598 and tr_A0A096P2P8_A0A096P2P8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2R9S9_H2R9S9_PANTR_9598 and tr_A0A0D9RH57_A0A0D9RH57_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2R9S9_H2R9S9_PANTR_9598 and tr_A0A2K5P3X4_A0A2K5P3X4_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2R9S9_H2R9S9_PANTR_9598 and tr_A0A2K6B7J7_A0A2K6B7J7_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q62888_NLGN2_RAT_10116 and tr_A0A1U8BV67_A0A1U8BV67_MESAU_10036 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A286XBR3_A0A286XBR3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A2I2UDX2_A0A2I2UDX2_FELCA_9685 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A091CW20_A0A091CW20_FUKDA_885580 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A3Q0DMF7_A0A3Q0DMF7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A2U3VNI4_A0A2U3VNI4_ODORO_9708 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A2Y9DSC6_A0A2Y9DSC6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A2Y9LF14_A0A2Y9LF14_ENHLU_391180 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A2Y9M4T8_A0A2Y9M4T8_DELLE_9749 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A2Y9F3J5_A0A2Y9F3J5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_I3MQG8_I3MQG8_ICTTR_43179 and tr_A0A384A8J7_A0A384A8J7_BALAS_310752 are exactly identical! WARNING: Sequences tr_F7HPD8_F7HPD8_MACMU_9544 and tr_A0A2K6DEC1_A0A2K6DEC1_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q27459_ACE1_CAEBR_6238 and tr_A0A2G5SKJ2_A0A2G5SKJ2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B3SA34_B3SA34_TRIAD_10228 and tr_A0A369RTK9_A0A369RTK9_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7Q259_G7Q259_MACFA_9541 and tr_A0A2K5P6E8_A0A2K5P6E8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7Q259_G7Q259_MACFA_9541 and tr_A0A2K6CZZ8_A0A2K6CZZ8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7Q259_G7Q259_MACFA_9541 and tr_A0A2K5Z653_A0A2K5Z653_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3JPR7_U3JPR7_FICAL_59894 and tr_A0A218UNQ1_A0A218UNQ1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A151P739_A0A151P739_ALLMI_8496 and tr_A0A1U8DP68_A0A1U8DP68_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091FHC2_A0A091FHC2_CORBR_85066 and tr_A0A093PKH9_A0A093PKH9_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091V4Q2_A0A091V4Q2_NIPNI_128390 and tr_A0A087QSP2_A0A087QSP2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V4Q2_A0A091V4Q2_NIPNI_128390 and tr_A0A093I3P5_A0A093I3P5_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091V4Q2_A0A091V4Q2_NIPNI_128390 and tr_A0A091GC26_A0A091GC26_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091V4Q2_A0A091V4Q2_NIPNI_128390 and tr_A0A0A0ASH1_A0A0A0ASH1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091V4Q2_A0A091V4Q2_NIPNI_128390 and tr_A0A093IU93_A0A093IU93_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0V0RVT5_A0A0V0RVT5_9BILA_6336 and tr_A0A0V1DH51_A0A0V1DH51_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RVT5_A0A0V0RVT5_9BILA_6336 and tr_A0A0V0UXW0_A0A0V0UXW0_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RVT5_A0A0V0RVT5_9BILA_6336 and tr_A0A0V1A6E5_A0A0V1A6E5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RVT5_A0A0V0RVT5_9BILA_6336 and tr_A0A0V1NZQ1_A0A0V1NZQ1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0X3S9_A0A0V0X3S9_9BILA_92179 and tr_A0A0V1LLG6_A0A0V1LLG6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1PN89_A0A0V1PN89_9BILA_92180 and tr_A0A0V0TZC6_A0A0V0TZC6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S2ZNE7_A0A1S2ZNE7_ERIEU_9365 and tr_A0A1S3EXN0_A0A1S3EXN0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1S2ZNE7_A0A1S2ZNE7_ERIEU_9365 and tr_A0A2Y9T4P8_A0A2Y9T4P8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1S3MQM2_A0A1S3MQM2_SALSA_8030 and tr_A0A1S3MV01_A0A1S3MV01_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A226N871_A0A226N871_CALSU_9009 and tr_A0A226PJX6_A0A226PJX6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4C4F2_A0A2U4C4F2_TURTR_9739 and tr_A0A2Y9M7D8_A0A2Y9M7D8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9JDD5_A0A2Y9JDD5_ENHLU_391180 and tr_A0A384D9R9_A0A384D9R9_URSMA_29073 are exactly identical! WARNING: Duplicate sequences found: 74 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276.raxml.reduced.phy Alignment comprises 1 partitions and 602 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 602 Gaps: 13.75 % Invariant sites: 0.66 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/3_mltree/P06276.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 151 / 12080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -296146.495774 [00:00:00 -296146.495774] Initial branch length optimization [00:00:01 -295303.634395] Model parameter optimization (eps = 0.100000) [00:00:38] Tree #1, final logLikelihood: -294637.265190 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.104722,0.238374) (0.171191,0.398089) (0.354956,0.853001) (0.369131,1.636574) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P06276/4_raxmlng_ancestral/P06276.raxml.log Analysis started: 03-Jun-2021 02:30:31 / finished: 03-Jun-2021 02:31:15 Elapsed time: 44.072 seconds Consumed energy: 2.117 Wh