RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 02:36:21 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/2_msa/P05062_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/3_mltree/P05062.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676981 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/2_msa/P05062_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 364 sites WARNING: Sequences tr_R4GM10_R4GM10_CHICK_9031 and tr_G1N2A4_G1N2A4_MELGA_9103 are exactly identical! WARNING: Sequences tr_M3YMB2_M3YMB2_MUSPF_9669 and tr_A0A2Y9LER3_A0A2Y9LER3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3FZU0_A0A2I3FZU0_NOMLE_61853 and tr_A0A2I3RKA0_A0A2I3RKA0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3FZU0_A0A2I3FZU0_NOMLE_61853 and sp_P04075_ALDOA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3FZU0_A0A2I3FZU0_NOMLE_61853 and tr_A0A2R9BVY0_A0A2R9BVY0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S5J8_G1S5J8_NOMLE_61853 and tr_A0A2I3SKK2_A0A2I3SKK2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S5J8_G1S5J8_NOMLE_61853 and tr_A0A2R9BPJ9_A0A2R9BPJ9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A144A3T1_A0A144A3T1_PLAF7_36329 and sp_Q7KQL9_ALF_PLAF7_36329 are exactly identical! WARNING: Sequences tr_G3R2M4_G3R2M4_GORGO_9595 and sp_P09972_ALDOC_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R2M4_G3R2M4_GORGO_9595 and tr_A0A2R9CGQ7_A0A2R9CGQ7_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5P1X9_W5P1X9_SHEEP_9940 and tr_A6QLL8_A6QLL8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NIC3_A0A158NIC3_ATTCE_12957 and tr_A0A151HZ92_A0A151HZ92_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0E0FFG0_A0A0E0FFG0_ORYNI_4536 and tr_A0A0E0MQN2_A0A0E0MQN2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0FFG0_A0A0E0FFG0_ORYNI_4536 and tr_Q94JJ0_Q94JJ0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0FX88_A0A0E0FX88_ORYNI_4536 and tr_I1NUF4_I1NUF4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0FX88_A0A0E0FX88_ORYNI_4536 and tr_A0A0E0N6G4_A0A0E0N6G4_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0FX88_A0A0E0FX88_ORYNI_4536 and tr_A0A0D3EXK7_A0A0D3EXK7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0FX88_A0A0E0FX88_ORYNI_4536 and tr_A0A0D9YIV0_A0A0D9YIV0_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0FX88_A0A0E0FX88_ORYNI_4536 and sp_Q5N725_ALFC3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HE79_A0A0E0HE79_ORYNI_4536 and tr_A0A0E0DR72_A0A0E0DR72_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0HE79_A0A0E0HE79_ORYNI_4536 and tr_A0A0E0PM93_A0A0E0PM93_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HE79_A0A0E0HE79_ORYNI_4536 and tr_A0A0D9ZYY5_A0A0D9ZYY5_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HE79_A0A0E0HE79_ORYNI_4536 and sp_P17784_ALFC1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IQ08_A0A0E0IQ08_ORYNI_4536 and tr_A2XUB6_A2XUB6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_F6SYJ3_F6SYJ3_MACMU_9544 and tr_G7Q0V9_G7Q0V9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6SYJ3_F6SYJ3_MACMU_9544 and tr_A0A0D9R1H5_A0A0D9R1H5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6SYJ3_F6SYJ3_MACMU_9544 and tr_A0A2K5Y7K9_A0A2K5Y7K9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A2YQR2_A2YQR2_ORYSI_39946 and tr_A0A0E0QDQ9_A0A0E0QDQ9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2YQR2_A2YQR2_ORYSI_39946 and tr_Q6YPF1_Q6YPF1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8B4J4_B8B4J4_ORYSI_39946 and tr_I1Q3J5_I1Q3J5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8B4J4_B8B4J4_ORYSI_39946 and tr_Q69V57_Q69V57_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1NJR7_I1NJR7_ORYGL_4538 and tr_A0A0D3EIZ3_A0A0D3EIZ3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1QF81_I1QF81_ORYGL_4538 and tr_A0A0E0EH98_A0A0E0EH98_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I1QST6_I1QST6_ORYGL_4538 and tr_A0A0D3HBH5_A0A0D3HBH5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_E3MNS4_E3MNS4_CAERE_31234 and tr_A0A261ANJ8_A0A261ANJ8_9PELO_1503980 are exactly identical! WARNING: Sequences tr_G1M9L3_G1M9L3_AILME_9646 and tr_A0A384BMW2_A0A384BMW2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PRT5_G7PRT5_MACFA_9541 and tr_A0A2I3N8F8_A0A2I3N8F8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PRT5_G7PRT5_MACFA_9541 and tr_A0A2K6BZ18_A0A2K6BZ18_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PRT5_G7PRT5_MACFA_9541 and tr_A0A2K5XZW1_A0A2K5XZW1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7PTX4_G7PTX4_MACFA_9541 and tr_A0A2K5KT52_A0A2K5KT52_CERAT_9531 are exactly identical! WARNING: Sequences tr_F2ELD1_F2ELD1_HORVV_112509 and tr_W5EDL3_W5EDL3_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7Z4Y9_M7Z4Y9_TRIUA_4572 and tr_W5DTC2_W5DTC2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7Z4Y9_M7Z4Y9_TRIUA_4572 and tr_W5ETU1_W5ETU1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A044UUD9_A0A044UUD9_ONCVO_6282 and tr_A0A182EGV5_A0A182EGV5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067F4J3_A0A067F4J3_CITSI_2711 and tr_A0A2H5MZP0_A0A2H5MZP0_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078FFZ8_A0A078FFZ8_BRANA_3708 and tr_A0A0D3CTI0_A0A0D3CTI0_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078JFE6_A0A078JFE6_BRANA_3708 and tr_A0A0D3BYD7_A0A0D3BYD7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V4TM67_V4TM67_9ROSI_85681 and tr_A0A2H5PQI2_A0A2H5PQI2_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2S7L3_A0A0D2S7L3_GOSRA_29730 and tr_A0A1U8KR66_A0A1U8KR66_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2TZS6_A0A0D2TZS6_GOSRA_29730 and tr_A0A1U8JB55_A0A1U8JB55_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091JMN6_A0A091JMN6_EGRGA_188379 and tr_A0A1V4K2N1_A0A1V4K2N1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CUI4_A0A0V1CUI4_TRIBR_45882 and tr_A0A0V0X4X8_A0A0V0X4X8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CUI4_A0A0V1CUI4_TRIBR_45882 and tr_A0A0V0UVF1_A0A0V0UVF1_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CUI4_A0A0V1CUI4_TRIBR_45882 and tr_A0A0V1KPL1_A0A0V1KPL1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CUI4_A0A0V1CUI4_TRIBR_45882 and tr_A0A0V0Z8J7_A0A0V0Z8J7_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CUI4_A0A0V1CUI4_TRIBR_45882 and tr_A0A0V1NK61_A0A0V1NK61_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CUI4_A0A0V1CUI4_TRIBR_45882 and tr_A0A0V0TBI2_A0A0V0TBI2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1ME98_A0A0V1ME98_9BILA_268474 and tr_A0A0V1H624_A0A0V1H624_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3XQR5_A0A1S3XQR5_TOBAC_4097 and tr_A0A1U7XHJ7_A0A1U7XHJ7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Y2I1_A0A1S3Y2I1_TOBAC_4097 and tr_F2VJ75_F2VJ75_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3Y2I1_A0A1S3Y2I1_TOBAC_4097 and tr_A0A1U7VNL8_A0A1U7VNL8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YQR9_A0A1S3YQR9_TOBAC_4097 and tr_A0A1U7YCG5_A0A1U7YCG5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CQ40_A0A1S4CQ40_TOBAC_4097 and tr_A0A314KNS5_A0A314KNS5_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4CWV3_A0A1S4CWV3_TOBAC_4097 and tr_A0A1U7XN34_A0A1U7XN34_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CXS6_A0A1S4CXS6_TOBAC_4097 and tr_A0A1U7WHR5_A0A1U7WHR5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S2WZE0_A0A1S2WZE0_SALSA_8030 and sp_B5DGM7_ALDOA_SALSA_8030 are exactly identical! WARNING: Sequences tr_C0H9I1_C0H9I1_SALSA_8030 and tr_A0A060WV84_A0A060WV84_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D1VPE3_A0A1D1VPE3_RAMVA_947166 and tr_A0A1D1VR71_A0A1D1VR71_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A226N912_A0A226N912_CALSU_9009 and tr_A0A226PSK6_A0A226PSK6_COLVI_9014 are exactly identical! WARNING: Duplicate sequences found: 69 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062.raxml.reduced.phy Alignment comprises 1 partitions and 364 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 364 Gaps: 2.90 % Invariant sites: 1.37 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/3_mltree/P05062.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 91 / 7280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -103155.641156 [00:00:00 -103155.641156] Initial branch length optimization [00:00:00 -102248.083788] Model parameter optimization (eps = 0.100000) [00:00:26] Tree #1, final logLikelihood: -101945.366619 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.299837,0.383692) (0.229574,0.597474) (0.252972,0.905478) (0.217617,2.383681) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P05062/4_raxmlng_ancestral/P05062.raxml.log Analysis started: 03-Jun-2021 02:36:21 / finished: 03-Jun-2021 02:36:50 Elapsed time: 29.432 seconds Consumed energy: 2.396 Wh