RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 02:51:26 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/2_msa/P04792_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/3_mltree/P04792.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622677886 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/2_msa/P04792_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 205 sites WARNING: Sequences tr_B4QAX2_B4QAX2_DROSI_7240 and sp_P82147_L2EFL_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QAX2_B4QAX2_DROSI_7240 and tr_B4I8R4_B4I8R4_DROSE_7238 are exactly identical! WARNING: Sequences sp_P02504_CRYAA_CHICK_9031 and tr_A0A226MTH9_A0A226MTH9_CALSU_9009 are exactly identical! WARNING: Sequences sp_P02504_CRYAA_CHICK_9031 and tr_A0A226PIQ3_A0A226PIQ3_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q05713_CRYAB_CHICK_9031 and tr_G1MZP6_G1MZP6_MELGA_9103 are exactly identical! WARNING: Sequences sp_P24622_CRYAA_MOUSE_10090 and sp_P24623_CRYAA_RAT_10116 are exactly identical! WARNING: Sequences sp_P24622_CRYAA_MOUSE_10090 and tr_A0A1U7QEQ2_A0A1U7QEQ2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P24622_CRYAA_MOUSE_10090 and sp_P02497_CRYAA_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q99PR8_HSPB2_MOUSE_10090 and sp_O35878_HSPB2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XWX5_M3XWX5_MUSPF_9669 and tr_E2RNB6_E2RNB6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XWX5_M3XWX5_MUSPF_9669 and tr_D2HG87_D2HG87_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XWX5_M3XWX5_MUSPF_9669 and tr_A0A2U3ZUA2_A0A2U3ZUA2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XWX5_M3XWX5_MUSPF_9669 and tr_A0A2U3Y6C7_A0A2U3Y6C7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XWX5_M3XWX5_MUSPF_9669 and tr_A0A384C0E1_A0A384C0E1_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_G3QR27_G3QR27_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A2J8L0C8_A0A2J8L0C8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A1D5R999_A0A1D5R999_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_G7PNS7_G7PNS7_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A0D9S2T4_A0A0D9S2T4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A2K5M1D7_A0A2K5M1D7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A2K6CXI7_A0A2K6CXI7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A2K5XW09_A0A2K5XW09_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GIW1_A0A2I3GIW1_NOMLE_61853 and tr_A0A2R9CGA6_A0A2R9CGA6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_G3RC33_G3RC33_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and sp_Q5RAB0_HSPB8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_H2Q6Z7_H2Q6Z7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and sp_Q9UJY1_HSPB8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_F7HTN7_F7HTN7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_A0A096N1G3_A0A096N1G3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_A0A0D9S4F0_A0A0D9S4F0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_A0A2K5MN58_A0A2K5MN58_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_A0A2K6DY64_A0A2K6DY64_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_A0A2K5Y3M8_A0A2K5Y3M8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QH72_G1QH72_NOMLE_61853 and tr_A0A2R9AWK4_A0A2R9AWK4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_G1T4G1_G1T4G1_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_K7BZ54_K7BZ54_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and sp_Q16082_HSPB2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_F6ZR37_F6ZR37_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_A0A096NCI3_A0A096NCI3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_A0A0D9S2T9_A0A0D9S2T9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_A0A2K5LRG9_A0A2K5LRG9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_A0A2K6C0A2_A0A2K6C0A2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_A0A2K5XEA3_A0A2K5XEA3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R6R2_G1R6R2_NOMLE_61853 and tr_A0A2R9CIR8_A0A2R9CIR8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3H2H2_G3H2H2_CRIGR_10029 and tr_A0A1U8BYT3_A0A1U8BYT3_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3H2H2_G3H2H2_CRIGR_10029 and sp_P05811_CRYAB_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QJQ8_G3QJQ8_GORGO_9595 and tr_H2QUT1_H2QUT1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QJQ8_G3QJQ8_GORGO_9595 and sp_P04792_HSPB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QJQ8_G3QJQ8_GORGO_9595 and tr_F6XTF7_F6XTF7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QJQ8_G3QJQ8_GORGO_9595 and tr_A0A2K6AVS5_A0A2K6AVS5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QJQ8_G3QJQ8_GORGO_9595 and tr_A0A2R9BIJ2_A0A2R9BIJ2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R496_G3R496_GORGO_9595 and tr_A0A2I3RKP9_A0A2I3RKP9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R496_G3R496_GORGO_9595 and sp_A0A140G945_CRYA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R496_G3R496_GORGO_9595 and sp_P02489_CRYAA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R496_G3R496_GORGO_9595 and tr_A0A2R9AZW0_A0A2R9AZW0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RTD4_G3RTD4_GORGO_9595 and tr_K7CHA6_K7CHA6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RTD4_G3RTD4_GORGO_9595 and sp_O14558_HSPB6_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5R9K0_CRYAB_PONAB_9601 and sp_P02511_CRYAB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1T4F9_G1T4F9_RABIT_9986 and sp_P41316_CRYAB_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q29F95_Q29F95_DROPS_46245 and tr_B4H1M3_B4H1M3_DROPE_7234 are exactly identical! WARNING: Sequences sp_P68280_CRYAA_CANLF_9615 and sp_P68282_CRYAA_FELCA_9685 are exactly identical! WARNING: Sequences tr_F6PY96_F6PY96_HORSE_9796 and tr_G3T444_G3T444_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6PY96_F6PY96_HORSE_9796 and tr_F1SMB6_F1SMB6_PIG_9823 are exactly identical! WARNING: Sequences tr_F6PY96_F6PY96_HORSE_9796 and tr_A0A2Y9DWU3_A0A2Y9DWU3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F6PY96_F6PY96_HORSE_9796 and tr_A0A2Y9M8A6_A0A2Y9M8A6_DELLE_9749 are exactly identical! WARNING: Sequences tr_F6PY96_F6PY96_HORSE_9796 and tr_A0A2Y9FSP2_A0A2Y9FSP2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q5ENZ0_CRYAA_SHEEP_9940 and sp_P02470_CRYAA_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P4P2_W5P4P2_SHEEP_9940 and tr_A0A140T8A1_A0A140T8A1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P23928_CRYAB_RAT_10116 and tr_I3MEU1_I3MEU1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A088A3R2_A0A088A3R2_APIME_7460 and tr_A0A0K0K8Y3_A0A0K0K8Y3_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088A7Z5_A0A088A7Z5_APIME_7460 and tr_A0A0H3U138_A0A0H3U138_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P0J8_A0A158P0J8_ATTCE_12957 and tr_A0A195BN31_A0A195BN31_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A2H2ILC7_A0A2H2ILC7_CAEJA_281687 and tr_A0A1I7TJH5_A0A1I7TJH5_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A286XTR7_A0A286XTR7_CAVPO_10141 and tr_A0A091DD80_A0A091DD80_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P68281_CRYAA_CAVPO_10141 and tr_A0A1U7UTG6_A0A1U7UTG6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F6PQ65_F6PQ65_MACMU_9544 and tr_G7PXA8_G7PXA8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6PQ65_F6PQ65_MACMU_9544 and tr_A0A0A0MXH3_A0A0A0MXH3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6PQ65_F6PQ65_MACMU_9544 and tr_A0A2K5MQF1_A0A2K5MQF1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6PQ65_F6PQ65_MACMU_9544 and tr_A0A2K6DQ44_A0A2K6DQ44_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6PQ65_F6PQ65_MACMU_9544 and tr_A0A2K5ZQS5_A0A2K5ZQS5_MANLE_9568 are exactly identical! WARNING: Sequences sp_P02488_CRYAA_MACMU_9544 and tr_A0A096NIP2_A0A096NIP2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P02488_CRYAA_MACMU_9544 and tr_A0A0D9R6L0_A0A0D9R6L0_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P02488_CRYAA_MACMU_9544 and tr_A0A2K5P0X9_A0A2K5P0X9_CERAT_9531 are exactly identical! WARNING: Sequences sp_P02488_CRYAA_MACMU_9544 and tr_A0A2K6AQ21_A0A2K6AQ21_MACNE_9545 are exactly identical! WARNING: Sequences sp_P02488_CRYAA_MACMU_9544 and tr_A0A2K5ZRN4_A0A2K5ZRN4_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q7Q723_Q7Q723_ANOGA_7165 and tr_Q7Q724_Q7Q724_ANOGA_7165 are exactly identical! WARNING: Sequences tr_H0YPX8_H0YPX8_TAEGU_59729 and tr_A0A218UQH5_A0A218UQH5_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4WRM4_F4WRM4_ACREC_103372 and tr_A0A151I3Z9_A0A151I3Z9_9HYME_520822 are exactly identical! WARNING: Sequences tr_D2HG86_D2HG86_AILME_9646 and tr_A0A2I2UD88_A0A2I2UD88_FELCA_9685 are exactly identical! WARNING: Sequences tr_D2HG86_D2HG86_AILME_9646 and tr_A0A2Y9K628_A0A2Y9K628_ENHLU_391180 are exactly identical! WARNING: Sequences tr_D2HG86_D2HG86_AILME_9646 and tr_A0A384C1K4_A0A384C1K4_URSMA_29073 are exactly identical! WARNING: Sequences tr_T1JYE9_T1JYE9_TETUR_32264 and tr_T1JYF0_T1JYF0_TETUR_32264 are exactly identical! WARNING: Sequences tr_T1JYE9_T1JYE9_TETUR_32264 and tr_T1JYF6_T1JYF6_TETUR_32264 are exactly identical! WARNING: Sequences tr_U3JH28_U3JH28_FICAL_59894 and tr_A0A091F9K4_A0A091F9K4_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JH28_U3JH28_FICAL_59894 and tr_A0A093RTP6_A0A093RTP6_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3JH28_U3JH28_FICAL_59894 and tr_A0A093GPY0_A0A093GPY0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0L7K2K7_A0A0L7K2K7_9NEOP_104452 and tr_A0A0L7L9D3_A0A0L7L9D3_9NEOP_104452 are exactly identical! WARNING: Sequences tr_A0A0N4TQT1_A0A0N4TQT1_BRUPA_6280 and tr_A0A0R3QW50_A0A0R3QW50_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A091JVK8_A0A091JVK8_EGRGA_188379 and tr_A0A0A0AB92_A0A0A0AB92_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0LVC9_A0A2I0LVC9_COLLI_8932 and tr_A0A1V4J8W1_A0A1V4J8W1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0LVF0_A0A2I0LVF0_COLLI_8932 and tr_A0A1V4J7P1_A0A1V4J7P1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M5N2_A0A2I0M5N2_COLLI_8932 and tr_A0A1V4JC55_A0A1V4JC55_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RQY4_A0A0V0RQY4_9BILA_6336 and tr_A0A0V1CVB8_A0A0V1CVB8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RQY4_A0A0V0RQY4_9BILA_6336 and tr_A0A0V1NZ53_A0A0V1NZ53_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RQY4_A0A0V0RQY4_9BILA_6336 and tr_A0A0V0U8V9_A0A0V0U8V9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CVT4_A0A0V1CVT4_TRIBR_45882 and tr_A0A0V0WQL4_A0A0V0WQL4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CVT4_A0A0V1CVT4_TRIBR_45882 and tr_A0A0V1LR70_A0A0V1LR70_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CVT4_A0A0V1CVT4_TRIBR_45882 and tr_A0A0V0U941_A0A0V0U941_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A226MLP0_A0A226MLP0_CALSU_9009 and tr_A0A226NS68_A0A226NS68_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MUV1_A0A226MUV1_CALSU_9009 and tr_A0A226NRQ3_A0A226NRQ3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NBV0_A0A226NBV0_CALSU_9009 and tr_A0A226PH09_A0A226PH09_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3VNR0_A0A2U3VNR0_ODORO_9708 and tr_A0A384DFX0_A0A384DFX0_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2Y9F3Z6_A0A2Y9F3Z6_PHYCD_9755 and tr_A0A384AQE6_A0A384AQE6_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 113 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792.raxml.reduced.phy Alignment comprises 1 partitions and 205 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 205 Gaps: 26.96 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/3_mltree/P04792.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 52 / 4160 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -101235.324626 [00:00:00 -101235.324626] Initial branch length optimization [00:00:00 -87101.015709] Model parameter optimization (eps = 0.100000) [00:00:21] Tree #1, final logLikelihood: -86958.185768 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.093353,0.230095) (0.156077,0.314986) (0.379395,0.847329) (0.371175,1.637734) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04792/4_raxmlng_ancestral/P04792.raxml.log Analysis started: 03-Jun-2021 02:51:26 / finished: 03-Jun-2021 02:51:50 Elapsed time: 23.748 seconds Consumed energy: 1.888 Wh