RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 02:27:46 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/2_msa/P04150_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/3_mltree/P04150.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676466 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/2_msa/P04150_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 777 sites WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_G1NAZ5_G1NAZ5_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_H0YXC7_H0YXC7_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_U3KCN2_U3KCN2_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A091F459_A0A091F459_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A091JRM4_A0A091JRM4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A091VSG6_A0A091VSG6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A087QXC1_A0A087QXC1_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A093JHK5_A0A093JHK5_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A091GHM4_A0A091GHM4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A0A0A201_A0A0A0A201_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A2I0M533_A0A2I0M533_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A093GA30_A0A093GA30_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A091ITM6_A0A091ITM6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PH30_A0A1D5PH30_CHICK_9031 and tr_A0A218V4K8_A0A218V4K8_9PASE_299123 are exactly identical! WARNING: Sequences sp_O08580_ERR1_MOUSE_10090 and sp_Q5QJV7_ERR1_RAT_10116 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_G1RVM3_G1RVM3_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_G3GRF2_G3GRF2_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_H2N3Q0_H2N3Q0_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_G1SEH2_G1SEH2_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_E2R7U1_E2R7U1_CANLF_9615 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_W5PNX1_W5PNX1_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and sp_P62510_ERR3_RAT_10116 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_I3MDN3_I3MDN3_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and sp_P62508_ERR3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_G3TQM6_G3TQM6_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_F7H9C3_F7H9C3_CALJA_9483 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A287BBC6_A0A287BBC6_PIG_9823 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_E1BC39_E1BC39_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A0D9RT24_A0A0D9RT24_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A3Q0EBA6_A0A3Q0EBA6_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A1U8CPR2_A0A1U8CPR2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2U3UZV9_A0A2U3UZV9_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2U3V0B1_A0A2U3V0B1_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2U4A4F3_A0A2U4A4F3_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2Y9DJU8_A0A2Y9DJU8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2Y9NPV9_A0A2Y9NPV9_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62509_ERR3_MOUSE_10090 and tr_A0A2Y9FL95_A0A2Y9FL95_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YC96_M3YC96_MUSPF_9669 and tr_A0A2Y9JJA0_A0A2Y9JJA0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YGE7_M3YGE7_MUSPF_9669 and tr_A0A2Y9KSC8_A0A2Y9KSC8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2J8TYL4_A0A2J8TYL4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_K7DJ98_K7DJ98_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and sp_P11474_ERR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_F7E0X8_F7E0X8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A096NQ39_A0A096NQ39_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A0D9R4C8_A0A0D9R4C8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2K5L8D5_A0A2K5L8D5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2K6B4D5_A0A2K6B4D5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2K5Z665_A0A2K5Z665_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2R9BL88_A0A2R9BL88_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2U4B129_A0A2U4B129_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1PCE9_G1PCE9_MYOLU_59463 and tr_A0A2Y9DZ78_A0A2Y9DZ78_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I2Y1Q8_A0A2I2Y1Q8_GORGO_9595 and tr_A0A2J8PK71_A0A2J8PK71_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y1Q8_A0A2I2Y1Q8_GORGO_9595 and tr_A0A0D9RHQ2_A0A0D9RHQ2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Y1Q8_A0A2I2Y1Q8_GORGO_9595 and tr_A0A2R9B8V6_A0A2R9B8V6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YDJ3_A0A2I2YDJ3_GORGO_9595 and tr_A0A2R9BT94_A0A2R9BT94_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2I3T916_A0A2I3T916_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_G1L390_G1L390_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_G7NTZ4_G7NTZ4_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2I3LJD1_A0A2I3LJD1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2K6DWH0_A0A2K6DWH0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2K5ZZV6_A0A2K5ZZV6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2R9B4N7_A0A2R9B4N7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZN06_A0A2I2ZN06_GORGO_9595 and tr_A0A2U3ZS83_A0A2U3ZS83_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3R2K1_G3R2K1_GORGO_9595 and tr_A0A2J8Q9X9_A0A2J8Q9X9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1NJI1_G1NJI1_MELGA_9103 and tr_A0A093QCI4_A0A093QCI4_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NJI1_G1NJI1_MELGA_9103 and tr_A0A091GGB5_A0A091GGB5_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1P7L6_F1P7L6_CANLF_9615 and sp_Q9TT90_ANDR_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2J8MUF6_A0A2J8MUF6_PANTR_9598 and tr_A0A096MV60_A0A096MV60_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8MUF6_A0A2J8MUF6_PANTR_9598 and tr_A0A2K5YJS3_A0A2K5YJS3_MANLE_9568 are exactly identical! WARNING: Sequences sp_A7X8B3_PRGR_PANTR_9598 and tr_H2Q4L9_H2Q4L9_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2Q8G2_H2Q8G2_PANTR_9598 and tr_A0A2R9AKJ3_A0A2R9AKJ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6R995_F6R995_ORNAN_9258 and tr_F6QPZ5_F6QPZ5_MONDO_13616 are exactly identical! WARNING: Sequences tr_F6R995_F6R995_ORNAN_9258 and tr_G3WA42_G3WA42_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A3B5QIW1_A0A3B5QIW1_XIPMA_8083 and tr_A0A087Y9K1_A0A087Y9K1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R0L0_A0A3B5R0L0_XIPMA_8083 and tr_A0A087YM74_A0A087YM74_POEFO_48698 are exactly identical! WARNING: Sequences tr_H0VTA7_H0VTA7_CAVPO_10141 and tr_A0A091DBJ0_A0A091DBJ0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5QDG2_A0A1D5QDG2_MACMU_9544 and sp_Q6QT55_ANDR_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5QDG2_A0A1D5QDG2_MACMU_9544 and tr_A0A2K5ZPC3_A0A2K5ZPC3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6QUN5_F6QUN5_MACMU_9544 and tr_G7P4Y2_G7P4Y2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6QUN5_F6QUN5_MACMU_9544 and tr_A0A2K5LGU3_A0A2K5LGU3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6QUN5_F6QUN5_MACMU_9544 and tr_A0A2K6C4L5_A0A2K6C4L5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6QUN5_F6QUN5_MACMU_9544 and tr_A0A2K5ZVU6_A0A2K5ZVU6_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7DBF0_F7DBF0_MACMU_9544 and tr_A0A2K6CS01_A0A2K6CS01_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7DBF0_F7DBF0_MACMU_9544 and tr_A0A2K6A1Z9_A0A2K6A1Z9_MANLE_9568 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_G7P8J4_G7P8J4_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_A0A2K5NJE3_A0A2K5NJE3_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_A0A2K6C3F2_A0A2K6C3F2_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9FTF1_H9FTF1_MACMU_9544 and tr_A0A2K5YNL0_A0A2K5YNL0_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7FPJ5_F7FPJ5_CALJA_9483 and sp_Q95171_ESR2_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7IDY1_F7IDY1_CALJA_9483 and tr_G7PB19_G7PB19_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1RTM6_F1RTM6_PIG_9823 and sp_Q9GKL7_ANDR_PIG_9823 are exactly identical! WARNING: Sequences tr_G7PAI3_G7PAI3_MACFA_9541 and tr_A0A2K6C3F0_A0A2K6C3F0_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3X1F5_M3X1F5_FELCA_9685 and sp_Q53AD2_ESR1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3X2Z4_M3X2Z4_FELCA_9685 and tr_A0A2U3VHE1_A0A2U3VHE1_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A151P3F0_A0A151P3F0_ALLMI_8496 and tr_A0A1U7SET8_A0A1U7SET8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F5B7_A0A091F5B7_CORBR_85066 and tr_A0A0A0ALX1_A0A0A0ALX1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091KF60_A0A091KF60_EGRGA_188379 and tr_A0A091W043_A0A091W043_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A2D0RQD6_A0A2D0RQD6_ICTPU_7998 and tr_A0A2D0RRC7_A0A2D0RRC7_ICTPU_7998 are exactly identical! WARNING: Duplicate sequences found: 98 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150.raxml.reduced.phy Alignment comprises 1 partitions and 777 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 777 Gaps: 38.88 % Invariant sites: 0.26 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/3_mltree/P04150.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 195 / 15600 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -160426.891377 [00:00:00 -160426.891377] Initial branch length optimization [00:00:01 -157466.334296] Model parameter optimization (eps = 0.100000) [00:00:49] Tree #1, final logLikelihood: -157056.053173 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.145009,0.181742) (0.116966,0.260275) (0.207888,0.582700) (0.530137,1.550668) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04150/4_raxmlng_ancestral/P04150.raxml.log Analysis started: 03-Jun-2021 02:27:46 / finished: 03-Jun-2021 02:28:42 Elapsed time: 55.906 seconds Consumed energy: 4.555 Wh