RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:00:47 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/2_msa/P04049_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/3_mltree/P04049.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622674847 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/2_msa/P04049_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 648 sites WARNING: Sequences tr_B4R3I0_B4R3I0_DROSI_7240 and sp_P11346_KRAF1_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R3I0_B4R3I0_DROSI_7240 and tr_B4I9U9_B4I9U9_DROSE_7238 are exactly identical! WARNING: Sequences sp_P05625_RAF1_CHICK_9031 and tr_G1N0N1_G1N0N1_MELGA_9103 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_G3R2Q8_G3R2Q8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_H2Q6Z2_H2Q6Z2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and sp_Q6VAB6_KSR2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_F1MF36_F1MF36_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_A0A2I3MDP2_A0A2I3MDP2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_A0A2K6DZ55_A0A2K6DZ55_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_A0A2K6AET8_A0A2K6AET8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QHI1_G1QHI1_NOMLE_61853 and tr_A0A2R9AW42_A0A2R9AW42_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZCA6_M3ZCA6_NOMLE_61853 and sp_Q5R5M7_RAF1_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3ZCA6_M3ZCA6_NOMLE_61853 and sp_P04049_RAF1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3ZCA6_M3ZCA6_NOMLE_61853 and tr_A0A1D5R9U8_A0A1D5R9U8_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3ZCA6_M3ZCA6_NOMLE_61853 and tr_A0A2I3N2V3_A0A2I3N2V3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3ZCA6_M3ZCA6_NOMLE_61853 and tr_A0A2K5MHK5_A0A2K5MHK5_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3ZCA6_M3ZCA6_NOMLE_61853 and tr_A0A2K6DFM6_A0A2K6DFM6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R027_G3R027_GORGO_9595 and tr_K6ZK74_K6ZK74_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R027_G3R027_GORGO_9595 and sp_P10398_ARAF_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R027_G3R027_GORGO_9595 and tr_A0A2R8ZFY7_A0A2R8ZFY7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SB57_G3SB57_GORGO_9595 and tr_A0A2I3TK00_A0A2I3TK00_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SB57_G3SB57_GORGO_9595 and tr_K7CLW3_K7CLW3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SB57_G3SB57_GORGO_9595 and sp_P15056_BRAF_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SB57_G3SB57_GORGO_9595 and tr_A0A2R9BBV0_A0A2R9BBV0_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q296F4_Q296F4_DROPS_46245 and tr_B4GF87_B4GF87_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3THL4_A0A2I3THL4_PANTR_9598 and tr_A0A2R9B7H5_A0A2R9B7H5_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5P071_W5P071_SHEEP_9940 and tr_F1RKG1_F1RKG1_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A088ACF7_A0A088ACF7_APIME_7460 and tr_A0A2A3EFS2_A0A2A3EFS2_APICC_94128 are exactly identical! WARNING: Sequences tr_I3M0P3_I3M0P3_ICTTR_43179 and tr_A0A2Y9SZY4_A0A2Y9SZY4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A0E0JB85_A0A0E0JB85_ORYNI_4536 and tr_A0A0E0BU38_A0A0E0BU38_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0K0J9T1_A0A0K0J9T1_BRUMA_6279 and tr_A0A0N4TS34_A0A0N4TS34_BRUPA_6280 are exactly identical! WARNING: Sequences tr_H9FU32_H9FU32_MACMU_9544 and tr_A0A096MVH2_A0A096MVH2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9FU32_H9FU32_MACMU_9544 and tr_A0A2K5LIL6_A0A2K5LIL6_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9FU32_H9FU32_MACMU_9544 and tr_A0A2K6BZB6_A0A2K6BZB6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A2Z3N4_A2Z3N4_ORYSI_39946 and tr_A0A0E0B5Z4_A0A0E0B5Z4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2Z3N4_A2Z3N4_ORYSI_39946 and tr_Q7XXN2_Q7XXN2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8AIY9_B8AIY9_ORYSI_39946 and tr_A0A0P0VJX9_A0A0P0VJX9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1Q5E3_I1Q5E3_ORYGL_4538 and tr_Q5Z986_Q5Z986_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1QQW9_I1QQW9_ORYGL_4538 and tr_A0A0D3H9K3_A0A0D3H9K3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_G1LDI9_G1LDI9_AILME_9646 and tr_A0A2U3ZB31_A0A2U3ZB31_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1LDI9_G1LDI9_AILME_9646 and tr_A0A2U3Y9A9_A0A2U3Y9A9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1LDI9_G1LDI9_AILME_9646 and tr_A0A2Y9J054_A0A2Y9J054_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1LDI9_G1LDI9_AILME_9646 and tr_A0A384CML7_A0A384CML7_URSMA_29073 are exactly identical! WARNING: Sequences tr_M4EAW8_M4EAW8_BRARP_51351 and tr_A0A078GNI1_A0A078GNI1_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A3B6LRR0_A0A3B6LRR0_WHEAT_4565 and tr_A0A3B6MVS1_A0A3B6MVS1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A2K6W646_A0A2K6W646_ONCVO_6282 and tr_A0A182E103_A0A182E103_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067FLE1_A0A067FLE1_CITSI_2711 and tr_V4U926_V4U926_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GZ20_A0A067GZ20_CITSI_2711 and tr_V4TFM2_V4TFM2_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A096P039_A0A096P039_PAPAN_9555 and tr_A0A2K5M7Q2_A0A2K5M7Q2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P039_A0A096P039_PAPAN_9555 and tr_A0A2K6B2M6_A0A2K6B2M6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D2REG1_A0A0D2REG1_GOSRA_29730 and tr_A0A1U8MLC5_A0A1U8MLC5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SGH7_A0A0D2SGH7_GOSRA_29730 and tr_A0A1U8L318_A0A1U8L318_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091J0M7_A0A091J0M7_EGRGA_188379 and tr_A0A087RH49_A0A087RH49_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0L9TS60_A0A0L9TS60_PHAAN_3914 and tr_A0A1S3USW0_A0A1S3USW0_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A091ULD1_A0A091ULD1_NIPNI_128390 and tr_A0A087R064_A0A087R064_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091UVX2_A0A091UVX2_NIPNI_128390 and tr_A0A087QRZ3_A0A087QRZ3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0A0ANV3_A0A0A0ANV3_CHAVO_50402 and tr_A0A091I2S3_A0A091I2S3_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V1DI89_A0A0V1DI89_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V0XAF7_A0A0V0XAF7_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V0V235_A0A0V0V235_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V1L982_A0A0V1L982_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V0ZS61_A0A0V0ZS61_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V1PE13_A0A0V1PE13_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SHY9_A0A0V0SHY9_9BILA_6336 and tr_A0A0V0U287_A0A0V0U287_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MC22_A0A0V1MC22_9BILA_268474 and tr_A0A0V1I366_A0A0V1I366_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3XTN8_A0A1S3XTN8_TOBAC_4097 and tr_A0A1U7YJI0_A0A1U7YJI0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AA74_A0A1S4AA74_TOBAC_4097 and tr_A0A1U7YTV3_A0A1U7YTV3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BE03_A0A1S4BE03_TOBAC_4097 and tr_A0A1U7WCE7_A0A1U7WCE7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3NP33_A0A1S3NP33_SALSA_8030 and tr_A0A060XMD3_A0A060XMD3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2A2KHR1_A0A2A2KHR1_9BILA_2018661 and tr_A0A2A2LB93_A0A2A2LB93_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2D0PJA7_A0A2D0PJA7_ICTPU_7998 and tr_A0A2D0PKX2_A0A2D0PKX2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4C6J2_A0A2U4C6J2_TURTR_9739 and tr_A0A2Y9NJT6_A0A2Y9NJT6_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 72 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049.raxml.reduced.phy Alignment comprises 1 partitions and 648 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 648 Gaps: 27.34 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/3_mltree/P04049.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 162 / 12960 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -185679.696305 [00:00:00 -185679.696305] Initial branch length optimization [00:00:01 -183583.366670] Model parameter optimization (eps = 0.100000) [00:00:46] Tree #1, final logLikelihood: -183162.437729 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.126315,0.241084) (0.124744,0.284506) (0.359304,0.725728) (0.389637,1.728018) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P04049/4_raxmlng_ancestral/P04049.raxml.log Analysis started: 03-Jun-2021 02:00:47 / finished: 03-Jun-2021 02:01:40 Elapsed time: 53.063 seconds Consumed energy: 3.428 Wh