RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:16:58 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/2_msa/P02748_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/3_mltree/P02748.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647018 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/2_msa/P02748_nogap_msa.fasta [00:00:00] Loaded alignment with 797 taxa and 559 sites WARNING: Sequences tr_A0A1D5NXT1_A0A1D5NXT1_CHICK_9031 and tr_R0M3V6_R0M3V6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5NXT1_A0A1D5NXT1_CHICK_9031 and tr_A0A093PMQ8_A0A093PMQ8_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5NXT1_A0A1D5NXT1_CHICK_9031 and tr_A0A091VS38_A0A091VS38_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5NXT1_A0A1D5NXT1_CHICK_9031 and tr_A0A0A0A1J6_A0A0A0A1J6_CHAVO_50402 are exactly identical! WARNING: Sequences sp_A2AR95_LRAD3_MOUSE_10090 and tr_F1LXB2_F1LXB2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YK07_M3YK07_MUSPF_9669 and tr_A0A091DQ95_A0A091DQ95_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YK07_M3YK07_MUSPF_9669 and tr_A0A384DEF9_A0A384DEF9_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_G3QI56_G3QI56_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_F1PCS0_F1PCS0_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_H2Q5G9_H2Q5G9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and sp_O75581_LRP6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_G3THM2_G3THM2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_L5KJX6_L5KJX6_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A096N517_A0A096N517_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A0D9R8F0_A0A0D9R8F0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A2K5LEB8_A0A2K5LEB8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A2K6CDC2_A0A2K6CDC2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A2R9B648_A0A2R9B648_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A2U3WPM5_A0A2U3WPM5_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A2U3XNU0_A0A2U3XNU0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1QTL0_G1QTL0_NOMLE_61853 and tr_A0A2Y9IXH7_A0A2Y9IXH7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QXY9_G1QXY9_NOMLE_61853 and tr_H2QIY0_H2QIY0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QXY9_G1QXY9_NOMLE_61853 and tr_A0A2R9C9A4_A0A2R9C9A4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S7J0_G1S7J0_NOMLE_61853 and tr_K7D759_K7D759_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S7J0_G1S7J0_NOMLE_61853 and sp_Q9HCB6_SPON1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_G3RKF8_G3RKF8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_H2NDP5_H2NDP5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_H2Q3F1_H2Q3F1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and sp_Q86YD5_LRAD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_H9FQ87_H9FQ87_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_U3C0H8_U3C0H8_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_F1SHG2_F1SHG2_PIG_9823 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_E1BNK5_E1BNK5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_A0A2I3LT76_A0A2I3LT76_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_A0A0D9QZJ3_A0A0D9QZJ3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_A0A1S2ZN05_A0A1S2ZN05_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_A0A2K6CYQ8_A0A2K6CYQ8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S8F3_G1S8F3_NOMLE_61853 and tr_A0A2Y9NWE5_A0A2Y9NWE5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I2YVZ8_A0A2I2YVZ8_GORGO_9595 and tr_K7C8J1_K7C8J1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YVZ8_A0A2I2YVZ8_GORGO_9595 and sp_Q7Z4F1_LRP10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1TYJ0_G1TYJ0_RABIT_9986 and tr_A0A2R8ZUE5_A0A2R8ZUE5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1TYJ0_G1TYJ0_RABIT_9986 and tr_A0A2U4CF52_A0A2U4CF52_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1TYJ0_G1TYJ0_RABIT_9986 and tr_A0A2Y9S6V9_A0A2Y9S6V9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1TYJ0_G1TYJ0_RABIT_9986 and tr_A0A384A1C4_A0A384A1C4_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1PVT8_F1PVT8_CANLF_9615 and tr_G1M5D5_G1M5D5_AILME_9646 are exactly identical! WARNING: Sequences tr_F1PVT8_F1PVT8_CANLF_9615 and tr_A0A2U3ZPT2_A0A2U3ZPT2_ODORO_9708 are exactly identical! WARNING: Sequences tr_F7FVQ5_F7FVQ5_MONDO_13616 and tr_G3WK40_G3WK40_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6VQP0_F6VQP0_MACMU_9544 and tr_A0A2K6DLP5_A0A2K6DLP5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FSZ9_F7FSZ9_MACMU_9544 and tr_A0A2K5YUS7_A0A2K5YUS7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7N677_G7N677_MACMU_9544 and tr_G7PJV6_G7PJV6_MACFA_9541 are exactly identical! WARNING: Sequences tr_H0ZJY3_H0ZJY3_TAEGU_59729 and tr_U3JUV3_U3JUV3_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZJY3_H0ZJY3_TAEGU_59729 and tr_A0A091VV91_A0A091VV91_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZJY3_H0ZJY3_TAEGU_59729 and tr_A0A087QYL4_A0A087QYL4_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZJY3_H0ZJY3_TAEGU_59729 and tr_A0A0A0A376_A0A0A0A376_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q16GY3_Q16GY3_AEDAE_7159 and tr_Q171G8_Q171G8_AEDAE_7159 are exactly identical! WARNING: Sequences tr_D2H6W6_D2H6W6_AILME_9646 and tr_A0A2U3W2V7_A0A2U3W2V7_ODORO_9708 are exactly identical! WARNING: Sequences tr_B3S2H0_B3S2H0_TRIAD_10228 and tr_A0A369SSL3_A0A369SSL3_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S5U1_B3S5U1_TRIAD_10228 and tr_A0A369S1N4_A0A369S1N4_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7P9U3_G7P9U3_MACFA_9541 and tr_A0A0D9RUL2_A0A0D9RUL2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7P9U3_G7P9U3_MACFA_9541 and tr_A0A2K5NMN9_A0A2K5NMN9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7P9U3_G7P9U3_MACFA_9541 and tr_A0A2K6ADI0_A0A2K6ADI0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7PQN9_G7PQN9_MACFA_9541 and tr_A0A2K5LPG0_A0A2K5LPG0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PQN9_G7PQN9_MACFA_9541 and tr_A0A2K6CJ52_A0A2K6CJ52_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A091F4W2_A0A091F4W2_CORBR_85066 and tr_A0A091JQZ9_A0A091JQZ9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F4W2_A0A091F4W2_CORBR_85066 and tr_A0A087RAA4_A0A087RAA4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F4W2_A0A091F4W2_CORBR_85066 and tr_A0A0A0A6B0_A0A0A0A6B0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F4W2_A0A091F4W2_CORBR_85066 and tr_A0A2I0MKN4_A0A2I0MKN4_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091F4W2_A0A091F4W2_CORBR_85066 and tr_A0A1V4K8J6_A0A1V4K8J6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0W5R7_A0A0V0W5R7_9BILA_92179 and tr_A0A0V0VAW0_A0A0V0VAW0_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0W5R7_A0A0V0W5R7_9BILA_92179 and tr_A0A0V1L3G8_A0A0V1L3G8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0W5R7_A0A0V0W5R7_9BILA_92179 and tr_A0A0V0ZJP6_A0A0V0ZJP6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0W5R7_A0A0V0W5R7_9BILA_92179 and tr_A0A0V1NMA4_A0A0V1NMA4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0W5R7_A0A0V0W5R7_9BILA_92179 and tr_A0A0V0TGX4_A0A0V0TGX4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A2D0SVS9_A0A2D0SVS9_ICTPU_7998 and tr_W5U639_W5U639_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4BXD5_A0A2U4BXD5_TURTR_9739 and tr_A0A2Y9P4Z5_A0A2Y9P4Z5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BXD5_A0A2U4BXD5_TURTR_9739 and tr_A0A2Y9T7L1_A0A2Y9T7L1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CFC1_A0A2U4CFC1_TURTR_9739 and tr_A0A2Y9LVJ7_A0A2Y9LVJ7_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 77 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748.raxml.reduced.phy Alignment comprises 1 partitions and 559 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 559 Gaps: 56.15 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/3_mltree/P02748.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 140 / 11200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -163566.210787 [00:00:00 -163566.210787] Initial branch length optimization [00:00:01 -162534.835028] Model parameter optimization (eps = 0.100000) [00:00:50] Tree #1, final logLikelihood: -161925.144956 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.068235,0.258467) (0.070977,0.462723) (0.546593,0.892624) (0.314196,1.469210) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P02748/4_raxmlng_ancestral/P02748.raxml.log Analysis started: 02-Jun-2021 18:16:58 / finished: 02-Jun-2021 18:17:52 Elapsed time: 54.815 seconds Consumed energy: 3.946 Wh