RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 30-Jun-2021 17:18:17 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/2_msa/P01861_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/2_msa/P01861_trimmed_msa.fasta
[00:00:00] Loaded alignment with 606 taxa and 40 sites

WARNING: Sequences tr_A0A075B5J3_A0A075B5J3_MOUSE_10090 and tr_A0A075B5J4_A0A075B5J4_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5J3_A0A075B5J3_MOUSE_10090 and sp_P01851_TCB2_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5J3_A0A075B5J3_MOUSE_10090 and sp_P01852_TCB1_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0G2JE99_A0A0G2JE99_MOUSE_10090 and sp_P01843_LAC1_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1Y7VJN6_A0A1Y7VJN6_MOUSE_10090 and sp_P03987_IGHG3_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_F6TQW2_F6TQW2_MOUSE_10090 and sp_P01864_GCAB_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01863_GCAA_MOUSE_10090 and sp_P01865_GCAM_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A2I3G706_A0A2I3G706_NOMLE_61853 and tr_H9H2V9_H9H2V9_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I3G706_A0A2I3G706_NOMLE_61853 and tr_G8F4W8_G8F4W8_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A2I3G706_A0A2I3G706_NOMLE_61853 and tr_A0A096NEV9_A0A096NEV9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3G706_A0A2I3G706_NOMLE_61853 and tr_A0A0D9RAD7_A0A0D9RAD7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3G706_A0A2I3G706_NOMLE_61853 and tr_A0A2K5L3F3_A0A2K5L3F3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3G706_A0A2I3G706_NOMLE_61853 and tr_A0A2K5XE80_A0A2K5XE80_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3GGK0_A0A2I3GGK0_NOMLE_61853 and tr_A0A2I3I0B3_A0A2I3I0B3_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_A0A2I3GK70_A0A2I3GK70_NOMLE_61853 and tr_H2RGH5_H2RGH5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3GK70_A0A2I3GK70_NOMLE_61853 and sp_B9A064_IGLL5_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3GK70_A0A2I3GK70_NOMLE_61853 and sp_P0CG04_IGLC1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3GK70_A0A2I3GK70_NOMLE_61853 and sp_P0DOY2_IGLC2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3GK70_A0A2I3GK70_NOMLE_61853 and tr_A0A2R8ZDH4_A0A2R8ZDH4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3GK70_A0A2I3GK70_NOMLE_61853 and tr_A0A2R9A045_A0A2R9A045_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I3HR85_A0A2I3HR85_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I2Y8M1_A0A2I2Y8M1_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I2YYT3_A0A2I2YYT3_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I2ZEF0_A0A2I2ZEF0_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_H2NMH9_H2NMH9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I3RVW4_A0A2I3RVW4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I3TPD1_A0A2I3TPD1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I3TPV6_A0A2I3TPV6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2I3TTP0_A0A2I3TTP0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and sp_P01857_IGHG1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and sp_P01860_IGHG3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2R9AKE6_A0A2R9AKE6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2R9APT7_A0A2R9APT7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2R9ARQ8_A0A2R9ARQ8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3HJG0_A0A2I3HJG0_NOMLE_61853 and tr_A0A2R9ARU9_A0A2R9ARU9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1RH35_G1RH35_NOMLE_61853 and tr_G3SBN3_G3SBN3_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RH35_G1RH35_NOMLE_61853 and tr_A0A2I3RU10_A0A2I3RU10_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RH35_G1RH35_NOMLE_61853 and sp_P01871_IGHM_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RH35_G1RH35_NOMLE_61853 and tr_A0A2R9AJV4_A0A2R9AJV4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1PYD2_G1PYD2_MYOLU_59463 and tr_L7N1A0_L7N1A0_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1Q2D9_G1Q2D9_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1Q584_G1Q584_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1Q798_G1Q798_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q1P8_G1Q1P8_MYOLU_59463 and tr_G1QDP2_G1QDP2_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5R5_A0A2I2Y5R5_GORGO_9595 and tr_A0A2I2YYH6_A0A2I2YYH6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5R5_A0A2I2Y5R5_GORGO_9595 and tr_A0A2I2ZX49_A0A2I2ZX49_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5R5_A0A2I2Y5R5_GORGO_9595 and tr_G3RVT8_G3RVT8_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5R5_A0A2I2Y5R5_GORGO_9595 and tr_A0A2I3RQA9_A0A2I3RQA9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5R5_A0A2I2Y5R5_GORGO_9595 and sp_P0DOY3_IGLC3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5R5_A0A2I2Y5R5_GORGO_9595 and tr_A0A2R8ZL01_A0A2R8ZL01_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2YBC5_A0A2I2YBC5_GORGO_9595 and tr_A0A2I3T0F4_A0A2I3T0F4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YBC5_A0A2I2YBC5_GORGO_9595 and sp_P01861_IGHG4_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2YBC5_A0A2I2YBC5_GORGO_9595 and tr_A0A2R9ATU5_A0A2R9ATU5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2YH49_A0A2I2YH49_GORGO_9595 and tr_A0A2I3RH44_A0A2I3RH44_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YH49_A0A2I2YH49_GORGO_9595 and sp_P15814_IGLL1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2YJV7_A0A2I2YJV7_GORGO_9595 and tr_A0A2I2YT83_A0A2I2YT83_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I2YJV7_A0A2I2YJV7_GORGO_9595 and tr_A0A2I3RU66_A0A2I3RU66_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YJV7_A0A2I2YJV7_GORGO_9595 and tr_A0A2R9AKH8_A0A2R9AKH8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2YJX5_A0A2I2YJX5_GORGO_9595 and tr_A0A2I2YVJ5_A0A2I2YVJ5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I2YJX5_A0A2I2YJX5_GORGO_9595 and tr_H2NMG6_H2NMG6_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I2YJX5_A0A2I2YJX5_GORGO_9595 and tr_A0A2I3RCA9_A0A2I3RCA9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YJX5_A0A2I2YJX5_GORGO_9595 and tr_A0A2R9ASQ4_A0A2R9ASQ4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2YSH7_A0A2I2YSH7_GORGO_9595 and tr_A0A2I3ST83_A0A2I3ST83_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YSH7_A0A2I2YSH7_GORGO_9595 and tr_A0A2R9ARN7_A0A2R9ARN7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2ZAM2_A0A2I2ZAM2_GORGO_9595 and tr_A0A2I3TQ57_A0A2I3TQ57_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZAM2_A0A2I2ZAM2_GORGO_9595 and tr_A0A2R9AS20_A0A2R9AS20_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2ZLK8_A0A2I2ZLK8_GORGO_9595 and tr_A0A2I3SIV4_A0A2I3SIV4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZLK8_A0A2I2ZLK8_GORGO_9595 and sp_P0CF74_IGLC6_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SAA4_G3SAA4_GORGO_9595 and sp_P20758_IGHA1_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G3SAA4_G3SAA4_GORGO_9595 and sp_P01876_IGHA1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SJK7_G3SJK7_GORGO_9595 and tr_A0A2K6AUC7_A0A2K6AUC7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2NMG5_H2NMG5_PONAB_9601 and tr_A0A2I3TAC3_A0A2I3TAC3_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H9GTB3_H9GTB3_ANOCA_28377 and tr_L7MZR7_L7MZR7_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_G1T5L0_G1T5L0_RABIT_9986 and sp_P03988_IGHM_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1T5L0_G1T5L0_RABIT_9986 and sp_P04221_MUCM_RABIT_9986 are exactly identical!
WARNING: Sequences tr_F1PSX2_F1PSX2_CANLF_9615 and tr_H9GWR8_H9GWR8_CANLF_9615 are exactly identical!
WARNING: Sequences tr_F1PSX2_F1PSX2_CANLF_9615 and tr_J9NSQ1_J9NSQ1_CANLF_9615 are exactly identical!
WARNING: Sequences tr_F1PSX2_F1PSX2_CANLF_9615 and tr_L7N0F1_L7N0F1_CANLF_9615 are exactly identical!
WARNING: Sequences tr_F1PSX2_F1PSX2_CANLF_9615 and tr_L7N0F2_L7N0F2_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3RST4_A0A2I3RST4_PANTR_9598 and tr_A0A2R9AL11_A0A2R9AL11_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3RST4_A0A2I3RST4_PANTR_9598 and tr_A0A2R9ASB4_A0A2R9ASB4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3SLM4_A0A2I3SLM4_PANTR_9598 and tr_A0A2R8ZEL6_A0A2R8ZEL6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3T8I2_A0A2I3T8I2_PANTR_9598 and tr_A0A2R8ZJF9_A0A2R8ZJF9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6X1K3_F6X1K3_MONDO_13616 and tr_F6X1N6_F6X1N6_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F7BHQ4_F7BHQ4_MONDO_13616 and tr_F7BI68_F7BI68_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F7BHQ4_F7BHQ4_MONDO_13616 and tr_F7BIP4_F7BIP4_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F6W3U2_F6W3U2_HORSE_9796 and tr_H9GZV9_H9GZV9_HORSE_9796 are exactly identical!
WARNING: Sequences tr_A0A0G2K8K8_A0A0G2K8K8_RAT_10116 and sp_P20766_LAC1_RAT_10116 are exactly identical!
WARNING: Sequences tr_F1LTN6_F1LTN6_RAT_10116 and sp_P01835_KACB_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A1D5QQ04_A0A1D5QQ04_MACMU_9544 and tr_A0A2K6CXN9_A0A2K6CXN9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_G8F4J6_G8F4J6_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A0D9RAA6_A0A0D9RAA6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A2K5NVH7_A0A2K5NVH7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A2K6AWZ7_A0A2K6AWZ7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5R6M8_A0A1D5R6M8_MACMU_9544 and tr_A0A2K5XS14_A0A2K5XS14_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_F6W0E5_F6W0E5_MACMU_9544 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_G7PHD3_G7PHD3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2I3N4Y2_A0A2I3N4Y2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2I3NC97_A0A2I3NC97_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5KWJ5_A0A2K5KWJ5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5NVA9_A0A2K5NVA9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5NW12_A0A2K5NW12_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K6AZT5_A0A2K6AZT5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5XHN7_A0A2K5XHN7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6QQP0_F6QQP0_MACMU_9544 and tr_A0A2K5XM92_A0A2K5XM92_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7DKI0_F7DKI0_MACMU_9544 and tr_F7GMK4_F7GMK4_MACMU_9544 are exactly identical!
WARNING: Sequences tr_F7DKI0_F7DKI0_MACMU_9544 and tr_G7PHD1_G7PHD1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7DKI0_F7DKI0_MACMU_9544 and tr_A0A2K6ATF3_A0A2K6ATF3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_F7H602_F7H602_MACMU_9544 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2I3MCZ4_A0A2I3MCZ4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2K5KVY1_A0A2K5KVY1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2K6AWE3_A0A2K6AWE3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7F0D6_F7F0D6_MACMU_9544 and tr_A0A2K5XR48_A0A2K5XR48_MANLE_9568 are exactly identical!
WARNING: Sequences tr_K7FQA1_K7FQA1_PELSI_13735 and tr_K7G1C6_K7G1C6_PELSI_13735 are exactly identical!
WARNING: Sequences tr_K7GDI7_K7GDI7_PELSI_13735 and tr_K7GDL8_K7GDL8_PELSI_13735 are exactly identical!
WARNING: Sequences tr_H3BZ62_H3BZ62_TETNG_99883 and tr_H3CDM2_H3CDM2_TETNG_99883 are exactly identical!
WARNING: Sequences tr_G3TQZ2_G3TQZ2_LOXAF_9785 and tr_G3U4L8_G3U4L8_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_G3VEL9_G3VEL9_SARHA_9305 and tr_G3VMP7_G3VMP7_SARHA_9305 are exactly identical!
WARNING: Sequences tr_G3VEL9_G3VEL9_SARHA_9305 and tr_G3VNR1_G3VNR1_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A0A0MY58_A0A0A0MY58_PIG_9823 and tr_A0A286ZWN6_A0A286ZWN6_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A0A0MY58_A0A0A0MY58_PIG_9823 and sp_P01846_LAC_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1LPA5_G1LPA5_AILME_9646 and tr_A0A384CN00_A0A384CN00_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A337S268_A0A337S268_FELCA_9685 and tr_M3VW23_M3VW23_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A337S7A3_A0A337S7A3_FELCA_9685 and tr_A0A337SA19_A0A337SA19_FELCA_9685 are exactly identical!
WARNING: Sequences tr_U3IGL3_U3IGL3_ANAPL_8839 and tr_U3J2T4_U3J2T4_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A3B1IW41_A0A3B1IW41_ASTMX_7994 and tr_A0A3B1IYZ1_A0A3B1IYZ1_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IW41_A0A3B1IW41_ASTMX_7994 and tr_A0A3B1J8C6_A0A3B1J8C6_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IW41_A0A3B1IW41_ASTMX_7994 and tr_A0A3B1K857_A0A3B1K857_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1K085_A0A3B1K085_ASTMX_7994 and tr_A0A3B1KB45_A0A3B1KB45_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A2I3MC03_A0A2I3MC03_PAPAN_9555 and tr_A0A2I3MVY3_A0A2I3MVY3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3MC03_A0A2I3MC03_PAPAN_9555 and tr_A0A2K5KVQ1_A0A2K5KVQ1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3MHU9_A0A2I3MHU9_PAPAN_9555 and tr_A0A0D9RAC7_A0A0D9RAC7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3MHU9_A0A2I3MHU9_PAPAN_9555 and tr_A0A2K6AUX7_A0A2K6AUX7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3MYS9_A0A2I3MYS9_PAPAN_9555 and tr_A0A2I3N042_A0A2I3N042_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3MYS9_A0A2I3MYS9_PAPAN_9555 and tr_A0A2K6CZE2_A0A2K6CZE2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3NH51_A0A2I3NH51_PAPAN_9555 and tr_A0A2K5M2U7_A0A2K5M2U7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3NHR8_A0A2I3NHR8_PAPAN_9555 and tr_A0A2K5XUF2_A0A2K5XUF2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A091DW54_A0A091DW54_FUKDA_885580 and tr_A0A091DYE4_A0A091DYE4_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A0A0D9RAD1_A0A0D9RAD1_CHLSB_60711 and tr_A0A2K6AM77_A0A2K6AM77_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0D9RAD1_A0A0D9RAD1_CHLSB_60711 and tr_A0A2K5XJD4_A0A2K5XJD4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A0D9RNG1_A0A0D9RNG1_CHLSB_60711 and tr_A0A0D9RNG7_A0A0D9RNG7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A093Q9A5_A0A093Q9A5_9PASS_328815 and tr_A0A093SK14_A0A093SK14_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A226M6R6_A0A226M6R6_CALSU_9009 and tr_A0A226M7H2_A0A226M7H2_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226MJ98_A0A226MJ98_CALSU_9009 and tr_A0A226NX05_A0A226NX05_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2K5KW46_A0A2K5KW46_CERAT_9531 and tr_A0A2K5L2Q9_A0A2K5L2Q9_CERAT_9531 are exactly identical!
WARNING: Duplicate sequences found: 145

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.reduced.phy

Alignment comprises 1 partitions and 40 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 40 / 40
Gaps: 2.85 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 606 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 40 / 3200
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -42634.537617] Initial branch length optimization
[00:00:00 -35113.524590] Model parameter optimization (eps = 10.000000)
[00:00:07 -35061.028801] AUTODETECT spr round 1 (radius: 5)
[00:00:33 -27799.013566] AUTODETECT spr round 2 (radius: 10)
[00:01:06 -22579.874841] AUTODETECT spr round 3 (radius: 15)
[00:01:43 -18806.132360] AUTODETECT spr round 4 (radius: 20)
[00:02:21 -16960.969517] AUTODETECT spr round 5 (radius: 25)
[00:03:07 -16441.655968] SPR radius for FAST iterations: 25 (autodetect)
[00:03:07 -16441.655968] Model parameter optimization (eps = 3.000000)
[00:03:13 -16360.042667] FAST spr round 1 (radius: 25)
[00:03:47 -14121.765344] FAST spr round 2 (radius: 25)
[00:04:16 -13802.855599] FAST spr round 3 (radius: 25)
[00:04:44 -13763.715033] FAST spr round 4 (radius: 25)
[00:05:10 -13655.889835] FAST spr round 5 (radius: 25)
[00:05:36 -13613.887005] FAST spr round 6 (radius: 25)
[00:06:00 -13606.423373] FAST spr round 7 (radius: 25)
[00:06:24 -13606.421862] Model parameter optimization (eps = 1.000000)
[00:06:28 -13603.780491] SLOW spr round 1 (radius: 5)
[00:06:58 -13602.378582] SLOW spr round 2 (radius: 5)
[00:07:28 -13600.920216] SLOW spr round 3 (radius: 5)
[00:07:56 -13600.919824] SLOW spr round 4 (radius: 10)
[00:08:26 -13597.759494] SLOW spr round 5 (radius: 5)
[00:09:01 -13597.344432] SLOW spr round 6 (radius: 5)
[00:09:33 -13597.343053] SLOW spr round 7 (radius: 10)
[00:10:03 -13597.343042] SLOW spr round 8 (radius: 15)
[00:10:45 -13595.712672] SLOW spr round 9 (radius: 5)
[00:11:21 -13594.063991] SLOW spr round 10 (radius: 5)
[00:11:53 -13594.063991] SLOW spr round 11 (radius: 10)
[00:12:24 -13594.063990] SLOW spr round 12 (radius: 15)
[00:13:05 -13591.831963] SLOW spr round 13 (radius: 5)
[00:13:43 -13590.420590] SLOW spr round 14 (radius: 5)
[00:14:15 -13590.419507] SLOW spr round 15 (radius: 10)
[00:14:46 -13590.419384] SLOW spr round 16 (radius: 15)
[00:15:27 -13590.419353] SLOW spr round 17 (radius: 20)
[00:16:16 -13586.734660] SLOW spr round 18 (radius: 5)
[00:16:54 -13585.994286] SLOW spr round 19 (radius: 5)
[00:17:26 -13585.993851] SLOW spr round 20 (radius: 10)
[00:17:57 -13585.993835] SLOW spr round 21 (radius: 15)
[00:18:40 -13563.499108] SLOW spr round 22 (radius: 5)
[00:19:16 -13563.226266] SLOW spr round 23 (radius: 5)
[00:19:48 -13563.226266] SLOW spr round 24 (radius: 10)
[00:20:18 -13563.226266] SLOW spr round 25 (radius: 15)
[00:21:01 -13550.923612] SLOW spr round 26 (radius: 5)
[00:21:39 -13539.958268] SLOW spr round 27 (radius: 5)
[00:22:12 -13536.684337] SLOW spr round 28 (radius: 5)
[00:22:42 -13536.684105] SLOW spr round 29 (radius: 10)
[00:23:12 -13536.684105] SLOW spr round 30 (radius: 15)
[00:23:55 -13536.518149] SLOW spr round 31 (radius: 5)
[00:24:31 -13536.518131] SLOW spr round 32 (radius: 10)
[00:25:03 -13536.518130] SLOW spr round 33 (radius: 15)
[00:25:44 -13536.518130] SLOW spr round 34 (radius: 20)
[00:26:36 -13536.518130] SLOW spr round 35 (radius: 25)
[00:27:32 -13535.636185] SLOW spr round 36 (radius: 5)
[00:28:10 -13532.595013] SLOW spr round 37 (radius: 5)
[00:28:42 -13532.594917] SLOW spr round 38 (radius: 10)
[00:29:13 -13532.594914] SLOW spr round 39 (radius: 15)
[00:29:55 -13532.594913] SLOW spr round 40 (radius: 20)
[00:30:47 -13532.594913] SLOW spr round 41 (radius: 25)
[00:31:43 -13532.594912] Model parameter optimization (eps = 0.100000)

[00:31:46] ML tree search #1, logLikelihood: -13532.383642

[00:31:46 -42246.470701] Initial branch length optimization
[00:31:46 -34657.072096] Model parameter optimization (eps = 10.000000)
[00:31:54 -34627.988732] AUTODETECT spr round 1 (radius: 5)
[00:32:21 -28136.909452] AUTODETECT spr round 2 (radius: 10)
[00:32:53 -22692.097367] AUTODETECT spr round 3 (radius: 15)
[00:33:31 -19490.882106] AUTODETECT spr round 4 (radius: 20)
[00:34:07 -18651.899258] AUTODETECT spr round 5 (radius: 25)
[00:34:53 -17544.095481] SPR radius for FAST iterations: 25 (autodetect)
[00:34:53 -17544.095481] Model parameter optimization (eps = 3.000000)
[00:35:03 -17458.441727] FAST spr round 1 (radius: 25)
[00:35:36 -14486.785315] FAST spr round 2 (radius: 25)
[00:36:03 -13688.707162] FAST spr round 3 (radius: 25)
[00:36:30 -13416.326957] FAST spr round 4 (radius: 25)
[00:36:56 -13391.333811] FAST spr round 5 (radius: 25)
[00:37:20 -13389.021963] FAST spr round 6 (radius: 25)
[00:37:44 -13386.483001] FAST spr round 7 (radius: 25)
[00:38:08 -13386.482761] Model parameter optimization (eps = 1.000000)
[00:38:14 -13384.209944] SLOW spr round 1 (radius: 5)
[00:38:44 -13377.795336] SLOW spr round 2 (radius: 5)
[00:39:13 -13377.787231] SLOW spr round 3 (radius: 10)
[00:39:42 -13377.785055] SLOW spr round 4 (radius: 15)
[00:40:25 -13377.784098] SLOW spr round 5 (radius: 20)
[00:41:15 -13330.056889] SLOW spr round 6 (radius: 5)
[00:41:53 -13284.672914] SLOW spr round 7 (radius: 5)
[00:42:27 -13280.158657] SLOW spr round 8 (radius: 5)
[00:42:58 -13280.158051] SLOW spr round 9 (radius: 10)
[00:43:28 -13278.822076] SLOW spr round 10 (radius: 5)
[00:44:04 -13276.686962] SLOW spr round 11 (radius: 5)
[00:44:37 -13275.028822] SLOW spr round 12 (radius: 5)
[00:45:07 -13274.013232] SLOW spr round 13 (radius: 5)
[00:45:37 -13274.013172] SLOW spr round 14 (radius: 10)
[00:46:06 -13274.013168] SLOW spr round 15 (radius: 15)
[00:46:49 -13274.013155] SLOW spr round 16 (radius: 20)
[00:47:38 -13274.013152] SLOW spr round 17 (radius: 25)
[00:48:29 -13273.439375] SLOW spr round 18 (radius: 5)
[00:49:07 -13272.574784] SLOW spr round 19 (radius: 5)
[00:49:40 -13272.574027] SLOW spr round 20 (radius: 10)
[00:50:11 -13272.573839] SLOW spr round 21 (radius: 15)
[00:50:53 -13272.573781] SLOW spr round 22 (radius: 20)
[00:51:43 -13272.573760] SLOW spr round 23 (radius: 25)
[00:52:34 -13272.573752] Model parameter optimization (eps = 0.100000)

[00:52:38] ML tree search #2, logLikelihood: -13272.413891

[00:52:38 -43021.281647] Initial branch length optimization
[00:52:39 -35043.931519] Model parameter optimization (eps = 10.000000)
[00:52:47 -35008.656008] AUTODETECT spr round 1 (radius: 5)
[00:53:14 -27677.033860] AUTODETECT spr round 2 (radius: 10)
[00:53:47 -22561.091361] AUTODETECT spr round 3 (radius: 15)
[00:54:21 -20157.574889] AUTODETECT spr round 4 (radius: 20)
[00:54:58 -19132.698771] AUTODETECT spr round 5 (radius: 25)
[00:55:45 -17353.053145] SPR radius for FAST iterations: 25 (autodetect)
[00:55:45 -17353.053145] Model parameter optimization (eps = 3.000000)
[00:55:50 -17264.024903] FAST spr round 1 (radius: 25)
[00:56:24 -14086.677396] FAST spr round 2 (radius: 25)
[00:56:53 -13865.923079] FAST spr round 3 (radius: 25)
[00:57:20 -13798.619161] FAST spr round 4 (radius: 25)
[00:57:46 -13786.201792] FAST spr round 5 (radius: 25)
[00:58:11 -13784.380118] FAST spr round 6 (radius: 25)
[00:58:35 -13784.166513] FAST spr round 7 (radius: 25)
[00:58:59 -13784.164859] Model parameter optimization (eps = 1.000000)
[00:59:01 -13783.343224] SLOW spr round 1 (radius: 5)
[00:59:32 -13770.667233] SLOW spr round 2 (radius: 5)
[01:00:02 -13766.994668] SLOW spr round 3 (radius: 5)
[01:00:32 -13765.102209] SLOW spr round 4 (radius: 5)
[01:01:01 -13764.029031] SLOW spr round 5 (radius: 5)
[01:01:29 -13764.028523] SLOW spr round 6 (radius: 10)
[01:01:59 -13761.874310] SLOW spr round 7 (radius: 5)
[01:02:36 -13761.331016] SLOW spr round 8 (radius: 5)
[01:03:08 -13761.330470] SLOW spr round 9 (radius: 10)
[01:03:38 -13758.224034] SLOW spr round 10 (radius: 5)
[01:04:14 -13758.223999] SLOW spr round 11 (radius: 10)
[01:04:45 -13758.223999] SLOW spr round 12 (radius: 15)
[01:05:26 -13758.223999] SLOW spr round 13 (radius: 20)
[01:06:24 -13603.566804] SLOW spr round 14 (radius: 5)
[01:07:03 -13406.389958] SLOW spr round 15 (radius: 5)
[01:07:37 -13380.816868] SLOW spr round 16 (radius: 5)
[01:08:09 -13378.911467] SLOW spr round 17 (radius: 5)
[01:08:39 -13378.903304] SLOW spr round 18 (radius: 10)
[01:09:10 -13317.695960] SLOW spr round 19 (radius: 5)
[01:09:47 -13314.474246] SLOW spr round 20 (radius: 5)
[01:10:19 -13314.473638] SLOW spr round 21 (radius: 10)
[01:10:50 -13313.724012] SLOW spr round 22 (radius: 5)
[01:11:27 -13310.912289] SLOW spr round 23 (radius: 5)
[01:12:00 -13309.550671] SLOW spr round 24 (radius: 5)
[01:12:30 -13309.548512] SLOW spr round 25 (radius: 10)
[01:13:01 -13308.624519] SLOW spr round 26 (radius: 5)
[01:13:37 -13308.234625] SLOW spr round 27 (radius: 5)
[01:14:08 -13308.234422] SLOW spr round 28 (radius: 10)
[01:14:39 -13308.234400] SLOW spr round 29 (radius: 15)
[01:15:26 -13282.532273] SLOW spr round 30 (radius: 5)
[01:16:03 -13279.562165] SLOW spr round 31 (radius: 5)
[01:16:36 -13279.560328] SLOW spr round 32 (radius: 10)
[01:17:07 -13279.560227] SLOW spr round 33 (radius: 15)
[01:17:52 -13279.335062] SLOW spr round 34 (radius: 5)
[01:18:29 -13278.723312] SLOW spr round 35 (radius: 5)
[01:19:02 -13278.721462] SLOW spr round 36 (radius: 10)
[01:19:33 -13278.720573] SLOW spr round 37 (radius: 15)
[01:20:18 -13278.325044] SLOW spr round 38 (radius: 5)
[01:20:55 -13278.324481] SLOW spr round 39 (radius: 10)
[01:21:28 -13278.324151] SLOW spr round 40 (radius: 15)
[01:22:11 -13278.323854] SLOW spr round 41 (radius: 20)
[01:23:13 -13278.015556] SLOW spr round 42 (radius: 5)
[01:23:50 -13278.014981] SLOW spr round 43 (radius: 10)
[01:24:25 -13278.014753] SLOW spr round 44 (radius: 15)
[01:25:08 -13278.014545] SLOW spr round 45 (radius: 20)
[01:26:09 -13278.014352] SLOW spr round 46 (radius: 25)
[01:27:15 -13277.589268] SLOW spr round 47 (radius: 5)
[01:27:54 -13277.418293] SLOW spr round 48 (radius: 5)
[01:28:27 -13277.417880] SLOW spr round 49 (radius: 10)
[01:28:58 -13277.417788] SLOW spr round 50 (radius: 15)
[01:29:43 -13277.417708] SLOW spr round 51 (radius: 20)
[01:30:44 -13277.417634] SLOW spr round 52 (radius: 25)
[01:31:50 -13277.417566] Model parameter optimization (eps = 0.100000)

[01:31:54] ML tree search #3, logLikelihood: -13277.071936

[01:31:54 -42695.965963] Initial branch length optimization
[01:31:54 -34982.009104] Model parameter optimization (eps = 10.000000)
[01:32:01 -34941.660707] AUTODETECT spr round 1 (radius: 5)
[01:32:28 -27917.732830] AUTODETECT spr round 2 (radius: 10)
[01:33:01 -23138.635268] AUTODETECT spr round 3 (radius: 15)
[01:33:37 -19913.928667] AUTODETECT spr round 4 (radius: 20)
[01:34:15 -17804.520121] AUTODETECT spr round 5 (radius: 25)
[01:34:58 -17184.236249] SPR radius for FAST iterations: 25 (autodetect)
[01:34:58 -17184.236249] Model parameter optimization (eps = 3.000000)
[01:35:04 -17108.829929] FAST spr round 1 (radius: 25)
[01:35:39 -14125.672166] FAST spr round 2 (radius: 25)
[01:36:07 -13628.921974] FAST spr round 3 (radius: 25)
[01:36:34 -13454.886510] FAST spr round 4 (radius: 25)
[01:37:01 -13437.136065] FAST spr round 5 (radius: 25)
[01:37:26 -13436.810755] FAST spr round 6 (radius: 25)
[01:37:50 -13436.794653] Model parameter optimization (eps = 1.000000)
[01:37:54 -13433.884603] SLOW spr round 1 (radius: 5)
[01:38:25 -13424.162393] SLOW spr round 2 (radius: 5)
[01:38:55 -13419.747358] SLOW spr round 3 (radius: 5)
[01:39:25 -13419.736955] SLOW spr round 4 (radius: 10)
[01:39:55 -13417.006767] SLOW spr round 5 (radius: 5)
[01:40:31 -13416.585809] SLOW spr round 6 (radius: 5)
[01:41:03 -13416.584951] SLOW spr round 7 (radius: 10)
[01:41:34 -13414.293693] SLOW spr round 8 (radius: 5)
[01:42:11 -13413.387305] SLOW spr round 9 (radius: 5)
[01:42:45 -13413.386714] SLOW spr round 10 (radius: 10)
[01:43:17 -13413.386648] SLOW spr round 11 (radius: 15)
[01:44:04 -13413.386639] SLOW spr round 12 (radius: 20)
[01:45:06 -13388.867927] SLOW spr round 13 (radius: 5)
[01:45:47 -13363.736481] SLOW spr round 14 (radius: 5)
[01:46:22 -13359.651481] SLOW spr round 15 (radius: 5)
[01:46:55 -13359.651201] SLOW spr round 16 (radius: 10)
[01:47:27 -13359.408126] SLOW spr round 17 (radius: 5)
[01:48:04 -13358.011962] SLOW spr round 18 (radius: 5)
[01:48:38 -13357.814312] SLOW spr round 19 (radius: 5)
[01:49:10 -13357.812720] SLOW spr round 20 (radius: 10)
[01:49:41 -13357.812512] SLOW spr round 21 (radius: 15)
[01:50:27 -13357.812436] SLOW spr round 22 (radius: 20)
[01:51:25 -13355.546382] SLOW spr round 23 (radius: 5)
[01:52:05 -13353.708588] SLOW spr round 24 (radius: 5)
[01:52:40 -13353.001673] SLOW spr round 25 (radius: 5)
[01:53:12 -13353.001264] SLOW spr round 26 (radius: 10)
[01:53:44 -13353.000896] SLOW spr round 27 (radius: 15)
[01:54:29 -13353.000499] SLOW spr round 28 (radius: 20)
[01:55:26 -13352.343881] SLOW spr round 29 (radius: 5)
[01:56:05 -13352.343869] SLOW spr round 30 (radius: 10)
[01:56:40 -13352.343868] SLOW spr round 31 (radius: 15)
[01:57:23 -13352.343868] SLOW spr round 32 (radius: 20)
[01:58:21 -13352.217254] SLOW spr round 33 (radius: 5)
[01:59:00 -13352.217246] SLOW spr round 34 (radius: 10)
[01:59:35 -13352.217246] SLOW spr round 35 (radius: 15)
[02:00:19 -13352.217246] SLOW spr round 36 (radius: 20)
[02:01:17 -13352.217246] SLOW spr round 37 (radius: 25)
[02:02:20 -13293.837881] SLOW spr round 38 (radius: 5)
[02:03:00 -13291.013904] SLOW spr round 39 (radius: 5)
[02:03:34 -13291.013816] SLOW spr round 40 (radius: 10)
[02:04:05 -13291.013798] SLOW spr round 41 (radius: 15)
[02:04:49 -13291.013793] SLOW spr round 42 (radius: 20)
[02:05:46 -13291.013792] SLOW spr round 43 (radius: 25)
[02:06:48 -13289.914524] SLOW spr round 44 (radius: 5)
[02:07:27 -13289.364828] SLOW spr round 45 (radius: 5)
[02:08:00 -13289.364810] SLOW spr round 46 (radius: 10)
[02:08:31 -13289.364808] SLOW spr round 47 (radius: 15)
[02:09:16 -13289.364808] SLOW spr round 48 (radius: 20)
[02:10:12 -13289.364808] SLOW spr round 49 (radius: 25)
[02:11:13 -13289.364808] Model parameter optimization (eps = 0.100000)

[02:11:16] ML tree search #4, logLikelihood: -13288.853832

[02:11:16 -42751.034843] Initial branch length optimization
[02:11:16 -35147.505663] Model parameter optimization (eps = 10.000000)
[02:11:22 -35112.899211] AUTODETECT spr round 1 (radius: 5)
[02:11:49 -28071.532541] AUTODETECT spr round 2 (radius: 10)
[02:12:21 -21954.170519] AUTODETECT spr round 3 (radius: 15)
[02:12:57 -18498.371677] AUTODETECT spr round 4 (radius: 20)
[02:13:35 -17054.528876] AUTODETECT spr round 5 (radius: 25)
[02:14:23 -16234.970159] SPR radius for FAST iterations: 25 (autodetect)
[02:14:23 -16234.970159] Model parameter optimization (eps = 3.000000)
[02:14:32 -16147.587306] FAST spr round 1 (radius: 25)
[02:15:03 -14100.253802] FAST spr round 2 (radius: 25)
[02:15:31 -13534.234888] FAST spr round 3 (radius: 25)
[02:15:57 -13345.867792] FAST spr round 4 (radius: 25)
[02:16:23 -13310.202951] FAST spr round 5 (radius: 25)
[02:16:48 -13306.941824] FAST spr round 6 (radius: 25)
[02:17:11 -13306.941328] Model parameter optimization (eps = 1.000000)
[02:17:15 -13306.452438] SLOW spr round 1 (radius: 5)
[02:17:46 -13303.212495] SLOW spr round 2 (radius: 5)
[02:18:14 -13303.210092] SLOW spr round 3 (radius: 10)
[02:18:43 -13303.209438] SLOW spr round 4 (radius: 15)
[02:19:31 -13269.481416] SLOW spr round 5 (radius: 5)
[02:20:08 -13265.584503] SLOW spr round 6 (radius: 5)
[02:20:40 -13265.584215] SLOW spr round 7 (radius: 10)
[02:21:11 -13265.418248] SLOW spr round 8 (radius: 5)
[02:21:46 -13265.418222] SLOW spr round 9 (radius: 10)
[02:22:18 -13264.980496] SLOW spr round 10 (radius: 5)
[02:22:52 -13264.980408] SLOW spr round 11 (radius: 10)
[02:23:24 -13264.980407] SLOW spr round 12 (radius: 15)
[02:24:08 -13264.364327] SLOW spr round 13 (radius: 5)
[02:24:45 -13263.686055] SLOW spr round 14 (radius: 5)
[02:25:18 -13263.686046] SLOW spr round 15 (radius: 10)
[02:25:48 -13263.686046] SLOW spr round 16 (radius: 15)
[02:26:33 -13263.399152] SLOW spr round 17 (radius: 5)
[02:27:10 -13262.852871] SLOW spr round 18 (radius: 5)
[02:27:42 -13262.852867] SLOW spr round 19 (radius: 10)
[02:28:13 -13262.852867] SLOW spr round 20 (radius: 15)
[02:28:58 -13262.852867] SLOW spr round 21 (radius: 20)
[02:29:57 -13260.330792] SLOW spr round 22 (radius: 5)
[02:30:35 -13259.968585] SLOW spr round 23 (radius: 5)
[02:31:08 -13259.967861] SLOW spr round 24 (radius: 10)
[02:31:39 -13259.967860] SLOW spr round 25 (radius: 15)
[02:32:24 -13259.967860] SLOW spr round 26 (radius: 20)
[02:33:23 -13259.967860] SLOW spr round 27 (radius: 25)
[02:34:30 -13259.663315] SLOW spr round 28 (radius: 5)
[02:35:08 -13259.061979] SLOW spr round 29 (radius: 5)
[02:35:42 -13259.059848] SLOW spr round 30 (radius: 10)
[02:36:14 -13259.059837] SLOW spr round 31 (radius: 15)
[02:36:59 -13259.059837] SLOW spr round 32 (radius: 20)
[02:37:57 -13259.059837] SLOW spr round 33 (radius: 25)
[02:39:03 -13259.059837] Model parameter optimization (eps = 0.100000)

[02:39:05] ML tree search #5, logLikelihood: -13258.967372

[02:39:05 -42677.146577] Initial branch length optimization
[02:39:06 -35017.872156] Model parameter optimization (eps = 10.000000)
[02:39:12 -34995.629941] AUTODETECT spr round 1 (radius: 5)
[02:39:39 -26740.324683] AUTODETECT spr round 2 (radius: 10)
[02:40:10 -21302.656420] AUTODETECT spr round 3 (radius: 15)
[02:40:46 -18240.589763] AUTODETECT spr round 4 (radius: 20)
[02:41:23 -17311.981080] AUTODETECT spr round 5 (radius: 25)
[02:42:06 -16547.868825] SPR radius for FAST iterations: 25 (autodetect)
[02:42:06 -16547.868825] Model parameter optimization (eps = 3.000000)
[02:42:13 -16474.282359] FAST spr round 1 (radius: 25)
[02:42:45 -14196.950333] FAST spr round 2 (radius: 25)
[02:43:12 -13928.213370] FAST spr round 3 (radius: 25)
[02:43:39 -13881.057011] FAST spr round 4 (radius: 25)
[02:44:05 -13875.134548] FAST spr round 5 (radius: 25)
[02:44:29 -13867.767207] FAST spr round 6 (radius: 25)
[02:44:54 -13849.334746] FAST spr round 7 (radius: 25)
[02:45:18 -13849.334079] Model parameter optimization (eps = 1.000000)
[02:45:24 -13847.152010] SLOW spr round 1 (radius: 5)
[02:45:56 -13837.523191] SLOW spr round 2 (radius: 5)
[02:46:27 -13834.619034] SLOW spr round 3 (radius: 5)
[02:46:56 -13834.446782] SLOW spr round 4 (radius: 5)
[02:47:25 -13834.446178] SLOW spr round 5 (radius: 10)
[02:47:54 -13834.445906] SLOW spr round 6 (radius: 15)
[02:48:33 -13831.219655] SLOW spr round 7 (radius: 5)
[02:49:09 -13831.219619] SLOW spr round 8 (radius: 10)
[02:49:40 -13827.056101] SLOW spr round 9 (radius: 5)
[02:50:15 -13827.056089] SLOW spr round 10 (radius: 10)
[02:50:45 -13827.056080] SLOW spr round 11 (radius: 15)
[02:51:22 -13827.056072] SLOW spr round 12 (radius: 20)
[02:52:09 -13824.738794] SLOW spr round 13 (radius: 5)
[02:52:46 -13822.975529] SLOW spr round 14 (radius: 5)
[02:53:18 -13822.975516] SLOW spr round 15 (radius: 10)
[02:53:48 -13822.975512] SLOW spr round 16 (radius: 15)
[02:54:27 -13822.975508] SLOW spr round 17 (radius: 20)
[02:55:14 -13822.975504] SLOW spr round 18 (radius: 25)
[02:56:07 -13821.669873] SLOW spr round 19 (radius: 5)
[02:56:44 -13820.447869] SLOW spr round 20 (radius: 5)
[02:57:17 -13820.447377] SLOW spr round 21 (radius: 10)
[02:57:48 -13816.782734] SLOW spr round 22 (radius: 5)
[02:58:22 -13812.785762] SLOW spr round 23 (radius: 5)
[02:58:54 -13812.784441] SLOW spr round 24 (radius: 10)
[02:59:24 -13812.784394] SLOW spr round 25 (radius: 15)
[03:00:03 -13794.433406] SLOW spr round 26 (radius: 5)
[03:00:41 -13664.794225] SLOW spr round 27 (radius: 5)
[03:01:13 -13664.607406] SLOW spr round 28 (radius: 5)
[03:01:44 -13664.602361] SLOW spr round 29 (radius: 10)
[03:02:14 -13664.602350] SLOW spr round 30 (radius: 15)
[03:02:54 -13664.457849] SLOW spr round 31 (radius: 5)
[03:03:31 -13664.456397] SLOW spr round 32 (radius: 10)
[03:04:03 -13664.456346] SLOW spr round 33 (radius: 15)
[03:04:41 -13664.456343] SLOW spr round 34 (radius: 20)
[03:05:32 -13640.607235] SLOW spr round 35 (radius: 5)
[03:06:10 -13638.900722] SLOW spr round 36 (radius: 5)
[03:06:43 -13638.899752] SLOW spr round 37 (radius: 10)
[03:07:13 -13637.728997] SLOW spr round 38 (radius: 5)
[03:07:48 -13637.727894] SLOW spr round 39 (radius: 10)
[03:08:19 -13637.727806] SLOW spr round 40 (radius: 15)
[03:08:57 -13637.378636] SLOW spr round 41 (radius: 5)
[03:09:34 -13637.377706] SLOW spr round 42 (radius: 10)
[03:10:07 -13634.124051] SLOW spr round 43 (radius: 5)
[03:10:42 -13633.102266] SLOW spr round 44 (radius: 5)
[03:11:13 -13633.102265] SLOW spr round 45 (radius: 10)
[03:11:43 -13633.102265] SLOW spr round 46 (radius: 15)
[03:12:23 -13633.102261] SLOW spr round 47 (radius: 20)
[03:13:12 -13633.102261] SLOW spr round 48 (radius: 25)
[03:14:10 -13621.837011] SLOW spr round 49 (radius: 5)
[03:14:49 -13610.639115] SLOW spr round 50 (radius: 5)
[03:15:24 -13607.405439] SLOW spr round 51 (radius: 5)
[03:15:55 -13607.029651] SLOW spr round 52 (radius: 5)
[03:16:25 -13607.029551] SLOW spr round 53 (radius: 10)
[03:16:55 -13607.029527] SLOW spr round 54 (radius: 15)
[03:17:37 -13605.906923] SLOW spr round 55 (radius: 5)
[03:18:14 -13605.846562] SLOW spr round 56 (radius: 10)
[03:18:47 -13605.846261] SLOW spr round 57 (radius: 15)
[03:19:27 -13605.846221] SLOW spr round 58 (radius: 20)
[03:20:19 -13605.846211] SLOW spr round 59 (radius: 25)
[03:21:18 -13605.846207] Model parameter optimization (eps = 0.100000)

[03:21:22] ML tree search #6, logLikelihood: -13605.007779

[03:21:22 -42595.651564] Initial branch length optimization
[03:21:23 -34988.803118] Model parameter optimization (eps = 10.000000)
[03:21:30 -34957.837962] AUTODETECT spr round 1 (radius: 5)
[03:21:57 -27230.646857] AUTODETECT spr round 2 (radius: 10)
[03:22:28 -22434.383772] AUTODETECT spr round 3 (radius: 15)
[03:23:02 -20677.667182] AUTODETECT spr round 4 (radius: 20)
[03:23:38 -18864.049778] AUTODETECT spr round 5 (radius: 25)
[03:24:24 -16810.658228] SPR radius for FAST iterations: 25 (autodetect)
[03:24:24 -16810.658228] Model parameter optimization (eps = 3.000000)
[03:24:30 -16740.094442] FAST spr round 1 (radius: 25)
[03:25:04 -13821.318373] FAST spr round 2 (radius: 25)
[03:25:32 -13431.695580] FAST spr round 3 (radius: 25)
[03:25:58 -13399.668762] FAST spr round 4 (radius: 25)
[03:26:23 -13395.516827] FAST spr round 5 (radius: 25)
[03:26:47 -13395.516659] Model parameter optimization (eps = 1.000000)
[03:26:52 -13393.080888] SLOW spr round 1 (radius: 5)
[03:27:22 -13391.729483] SLOW spr round 2 (radius: 5)
[03:27:51 -13390.805183] SLOW spr round 3 (radius: 5)
[03:28:20 -13390.805037] SLOW spr round 4 (radius: 10)
[03:28:50 -13385.177979] SLOW spr round 5 (radius: 5)
[03:29:27 -13382.411345] SLOW spr round 6 (radius: 5)
[03:30:00 -13381.399629] SLOW spr round 7 (radius: 5)
[03:30:30 -13380.872070] SLOW spr round 8 (radius: 5)
[03:30:59 -13380.869778] SLOW spr round 9 (radius: 10)
[03:31:30 -13375.916529] SLOW spr round 10 (radius: 5)
[03:32:06 -13375.825941] SLOW spr round 11 (radius: 10)
[03:32:38 -13372.367941] SLOW spr round 12 (radius: 5)
[03:33:13 -13371.956463] SLOW spr round 13 (radius: 5)
[03:33:45 -13371.955772] SLOW spr round 14 (radius: 10)
[03:34:15 -13371.955743] SLOW spr round 15 (radius: 15)
[03:34:59 -13371.418917] SLOW spr round 16 (radius: 5)
[03:35:36 -13371.418408] SLOW spr round 17 (radius: 10)
[03:36:10 -13371.418377] SLOW spr round 18 (radius: 15)
[03:36:52 -13371.418377] SLOW spr round 19 (radius: 20)
[03:37:50 -13365.094062] SLOW spr round 20 (radius: 5)
[03:38:28 -13362.338553] SLOW spr round 21 (radius: 5)
[03:39:01 -13361.085914] SLOW spr round 22 (radius: 5)
[03:39:32 -13359.480672] SLOW spr round 23 (radius: 5)
[03:40:02 -13359.480664] SLOW spr round 24 (radius: 10)
[03:40:31 -13359.480664] SLOW spr round 25 (radius: 15)
[03:41:16 -13359.480664] SLOW spr round 26 (radius: 20)
[03:42:13 -13359.480664] SLOW spr round 27 (radius: 25)
[03:43:21 -13348.919046] SLOW spr round 28 (radius: 5)
[03:44:00 -13296.084003] SLOW spr round 29 (radius: 5)
[03:44:34 -13294.611133] SLOW spr round 30 (radius: 5)
[03:45:05 -13294.611091] SLOW spr round 31 (radius: 10)
[03:45:35 -13294.611087] SLOW spr round 32 (radius: 15)
[03:46:19 -13294.611085] SLOW spr round 33 (radius: 20)
[03:47:18 -13294.611085] SLOW spr round 34 (radius: 25)
[03:48:26 -13283.158499] SLOW spr round 35 (radius: 5)
[03:49:05 -13263.843510] SLOW spr round 36 (radius: 5)
[03:49:39 -13263.538141] SLOW spr round 37 (radius: 5)
[03:50:10 -13263.537848] SLOW spr round 38 (radius: 10)
[03:50:40 -13263.537818] SLOW spr round 39 (radius: 15)
[03:51:24 -13263.537807] SLOW spr round 40 (radius: 20)
[03:52:23 -13263.537805] SLOW spr round 41 (radius: 25)
[03:53:31 -13263.537805] Model parameter optimization (eps = 0.100000)

[03:53:34] ML tree search #7, logLikelihood: -13262.877955

[03:53:34 -42499.418612] Initial branch length optimization
[03:53:35 -34856.651749] Model parameter optimization (eps = 10.000000)
[03:53:42 -34820.210097] AUTODETECT spr round 1 (radius: 5)
[03:54:09 -28153.959731] AUTODETECT spr round 2 (radius: 10)
[03:54:41 -22498.286101] AUTODETECT spr round 3 (radius: 15)
[03:55:17 -19293.345912] AUTODETECT spr round 4 (radius: 20)
[03:55:54 -17961.377115] AUTODETECT spr round 5 (radius: 25)
[03:56:37 -17396.073984] SPR radius for FAST iterations: 25 (autodetect)
[03:56:37 -17396.073984] Model parameter optimization (eps = 3.000000)
[03:56:45 -17325.529678] FAST spr round 1 (radius: 25)
[03:57:17 -14553.684985] FAST spr round 2 (radius: 25)
[03:57:45 -14013.392577] FAST spr round 3 (radius: 25)
[03:58:12 -13880.840128] FAST spr round 4 (radius: 25)
[03:58:38 -13867.382158] FAST spr round 5 (radius: 25)
[03:59:03 -13864.161961] FAST spr round 6 (radius: 25)
[03:59:28 -13864.161122] Model parameter optimization (eps = 1.000000)
[03:59:33 -13862.838613] SLOW spr round 1 (radius: 5)
[04:00:04 -13858.518931] SLOW spr round 2 (radius: 5)
[04:00:34 -13858.363122] SLOW spr round 3 (radius: 5)
[04:01:03 -13856.356785] SLOW spr round 4 (radius: 5)
[04:01:33 -13856.207834] SLOW spr round 5 (radius: 5)
[04:02:01 -13856.207743] SLOW spr round 6 (radius: 10)
[04:02:31 -13834.344284] SLOW spr round 7 (radius: 5)
[04:03:08 -13794.822262] SLOW spr round 8 (radius: 5)
[04:03:41 -13794.192369] SLOW spr round 9 (radius: 5)
[04:04:11 -13794.192151] SLOW spr round 10 (radius: 10)
[04:04:42 -13794.192114] SLOW spr round 11 (radius: 15)
[04:05:25 -13776.120754] SLOW spr round 12 (radius: 5)
[04:06:03 -13754.437707] SLOW spr round 13 (radius: 5)
[04:06:37 -13751.344714] SLOW spr round 14 (radius: 5)
[04:07:08 -13750.334184] SLOW spr round 15 (radius: 5)
[04:07:38 -13750.332055] SLOW spr round 16 (radius: 10)
[04:08:07 -13750.331903] SLOW spr round 17 (radius: 15)
[04:08:50 -13750.331890] SLOW spr round 18 (radius: 20)
[04:09:41 -13749.971733] SLOW spr round 19 (radius: 5)
[04:10:18 -13749.971446] SLOW spr round 20 (radius: 10)
[04:10:50 -13749.971427] SLOW spr round 21 (radius: 15)
[04:11:31 -13749.971422] SLOW spr round 22 (radius: 20)
[04:12:22 -13749.971418] SLOW spr round 23 (radius: 25)
[04:13:17 -13744.804441] SLOW spr round 24 (radius: 5)
[04:13:55 -13743.992961] SLOW spr round 25 (radius: 5)
[04:14:29 -13743.990517] SLOW spr round 26 (radius: 10)
[04:15:00 -13743.990378] SLOW spr round 27 (radius: 15)
[04:15:42 -13743.990375] SLOW spr round 28 (radius: 20)
[04:16:33 -13743.990369] SLOW spr round 29 (radius: 25)
[04:17:25 -13743.990367] Model parameter optimization (eps = 0.100000)

[04:17:28] ML tree search #8, logLikelihood: -13743.944683

[04:17:28 -43304.471860] Initial branch length optimization
[04:17:29 -35277.141268] Model parameter optimization (eps = 10.000000)
[04:17:35 -35245.433701] AUTODETECT spr round 1 (radius: 5)
[04:18:02 -28151.240680] AUTODETECT spr round 2 (radius: 10)
[04:18:34 -23098.043089] AUTODETECT spr round 3 (radius: 15)
[04:19:11 -19473.666620] AUTODETECT spr round 4 (radius: 20)
[04:19:52 -17124.614354] AUTODETECT spr round 5 (radius: 25)
[04:20:43 -16240.823886] SPR radius for FAST iterations: 25 (autodetect)
[04:20:43 -16240.823886] Model parameter optimization (eps = 3.000000)
[04:20:52 -16164.422664] FAST spr round 1 (radius: 25)
[04:21:26 -13692.353916] FAST spr round 2 (radius: 25)
[04:21:54 -13464.056963] FAST spr round 3 (radius: 25)
[04:22:20 -13374.392305] FAST spr round 4 (radius: 25)
[04:22:46 -13357.862284] FAST spr round 5 (radius: 25)
[04:23:10 -13354.863697] FAST spr round 6 (radius: 25)
[04:23:34 -13354.862503] Model parameter optimization (eps = 1.000000)
[04:23:40 -13351.464319] SLOW spr round 1 (radius: 5)
[04:24:11 -13344.489460] SLOW spr round 2 (radius: 5)
[04:24:42 -13340.788191] SLOW spr round 3 (radius: 5)
[04:25:11 -13340.679203] SLOW spr round 4 (radius: 5)
[04:25:40 -13340.679166] SLOW spr round 5 (radius: 10)
[04:26:09 -13339.215917] SLOW spr round 6 (radius: 5)
[04:26:45 -13338.879360] SLOW spr round 7 (radius: 5)
[04:27:17 -13338.878863] SLOW spr round 8 (radius: 10)
[04:27:47 -13338.878827] SLOW spr round 9 (radius: 15)
[04:28:32 -13338.878800] SLOW spr round 10 (radius: 20)
[04:29:29 -13338.713943] SLOW spr round 11 (radius: 5)
[04:30:06 -13338.713897] SLOW spr round 12 (radius: 10)
[04:30:40 -13338.713875] SLOW spr round 13 (radius: 15)
[04:31:22 -13338.713855] SLOW spr round 14 (radius: 20)
[04:32:20 -13338.713835] SLOW spr round 15 (radius: 25)
[04:33:26 -13336.109701] SLOW spr round 16 (radius: 5)
[04:34:05 -13273.550350] SLOW spr round 17 (radius: 5)
[04:34:39 -13265.790227] SLOW spr round 18 (radius: 5)
[04:35:10 -13265.789163] SLOW spr round 19 (radius: 10)
[04:35:40 -13265.789063] SLOW spr round 20 (radius: 15)
[04:36:25 -13265.789046] SLOW spr round 21 (radius: 20)
[04:37:24 -13265.776518] SLOW spr round 22 (radius: 25)
[04:38:29 -13265.776175] Model parameter optimization (eps = 0.100000)

[04:38:33] ML tree search #9, logLikelihood: -13265.490133

[04:38:33 -42831.207920] Initial branch length optimization
[04:38:34 -35190.226490] Model parameter optimization (eps = 10.000000)
[04:38:41 -35151.146892] AUTODETECT spr round 1 (radius: 5)
[04:39:08 -27453.871176] AUTODETECT spr round 2 (radius: 10)
[04:39:40 -22418.703951] AUTODETECT spr round 3 (radius: 15)
[04:40:19 -19101.796684] AUTODETECT spr round 4 (radius: 20)
[04:41:01 -17191.413217] AUTODETECT spr round 5 (radius: 25)
[04:41:48 -16621.747572] SPR radius for FAST iterations: 25 (autodetect)
[04:41:48 -16621.747572] Model parameter optimization (eps = 3.000000)
[04:41:57 -16523.846462] FAST spr round 1 (radius: 25)
[04:42:30 -14142.615813] FAST spr round 2 (radius: 25)
[04:42:59 -13702.307380] FAST spr round 3 (radius: 25)
[04:43:26 -13591.328377] FAST spr round 4 (radius: 25)
[04:43:53 -13545.573466] FAST spr round 5 (radius: 25)
[04:44:18 -13533.990133] FAST spr round 6 (radius: 25)
[04:44:42 -13532.450919] FAST spr round 7 (radius: 25)
[04:45:06 -13532.450680] Model parameter optimization (eps = 1.000000)
[04:45:11 -13529.400339] SLOW spr round 1 (radius: 5)
[04:45:42 -13521.806115] SLOW spr round 2 (radius: 5)
[04:46:12 -13520.678717] SLOW spr round 3 (radius: 5)
[04:46:41 -13520.675986] SLOW spr round 4 (radius: 10)
[04:47:11 -13517.364692] SLOW spr round 5 (radius: 5)
[04:47:47 -13515.627543] SLOW spr round 6 (radius: 5)
[04:48:19 -13515.624516] SLOW spr round 7 (radius: 10)
[04:48:50 -13515.238550] SLOW spr round 8 (radius: 5)
[04:49:24 -13515.236132] SLOW spr round 9 (radius: 10)
[04:49:56 -13515.235458] SLOW spr round 10 (radius: 15)
[04:50:36 -13515.235268] SLOW spr round 11 (radius: 20)
[04:51:30 -13511.236509] SLOW spr round 12 (radius: 5)
[04:52:09 -13510.291406] SLOW spr round 13 (radius: 5)
[04:52:41 -13510.290665] SLOW spr round 14 (radius: 10)
[04:53:12 -13510.290665] SLOW spr round 15 (radius: 15)
[04:53:53 -13510.290665] SLOW spr round 16 (radius: 20)
[04:54:47 -13510.290665] SLOW spr round 17 (radius: 25)
[04:55:48 -13493.116723] SLOW spr round 18 (radius: 5)
[04:56:27 -13396.668925] SLOW spr round 19 (radius: 5)
[04:57:02 -13345.332470] SLOW spr round 20 (radius: 5)
[04:57:33 -13345.200399] SLOW spr round 21 (radius: 5)
[04:58:03 -13345.200266] SLOW spr round 22 (radius: 10)
[04:58:33 -13344.303947] SLOW spr round 23 (radius: 5)
[04:59:08 -13344.303825] SLOW spr round 24 (radius: 10)
[04:59:40 -13343.216366] SLOW spr round 25 (radius: 5)
[05:00:14 -13343.215220] SLOW spr round 26 (radius: 10)
[05:00:46 -13343.215011] SLOW spr round 27 (radius: 15)
[05:01:28 -13343.214954] SLOW spr round 28 (radius: 20)
[05:02:26 -13343.193486] SLOW spr round 29 (radius: 25)
[05:03:32 -13343.193448] Model parameter optimization (eps = 0.100000)

[05:03:35] ML tree search #10, logLikelihood: -13342.973861

[05:03:35 -42707.377974] Initial branch length optimization
[05:03:35 -34801.459946] Model parameter optimization (eps = 10.000000)
[05:03:43 -34771.729889] AUTODETECT spr round 1 (radius: 5)
[05:04:10 -27642.539504] AUTODETECT spr round 2 (radius: 10)
[05:04:40 -22170.992499] AUTODETECT spr round 3 (radius: 15)
[05:05:15 -19361.391238] AUTODETECT spr round 4 (radius: 20)
[05:05:52 -17600.778444] AUTODETECT spr round 5 (radius: 25)
[05:06:34 -17086.411877] SPR radius for FAST iterations: 25 (autodetect)
[05:06:34 -17086.411877] Model parameter optimization (eps = 3.000000)
[05:06:40 -17007.784217] FAST spr round 1 (radius: 25)
[05:07:12 -14781.597705] FAST spr round 2 (radius: 25)
[05:07:40 -14125.162734] FAST spr round 3 (radius: 25)
[05:08:06 -13696.059071] FAST spr round 4 (radius: 25)
[05:08:31 -13654.364117] FAST spr round 5 (radius: 25)
[05:08:56 -13649.063223] FAST spr round 6 (radius: 25)
[05:09:20 -13648.040170] FAST spr round 7 (radius: 25)
[05:09:43 -13648.039859] Model parameter optimization (eps = 1.000000)
[05:09:46 -13646.270280] SLOW spr round 1 (radius: 5)
[05:10:16 -13639.240548] SLOW spr round 2 (radius: 5)
[05:10:46 -13636.032239] SLOW spr round 3 (radius: 5)
[05:11:15 -13634.790781] SLOW spr round 4 (radius: 5)
[05:11:44 -13632.999337] SLOW spr round 5 (radius: 5)
[05:12:11 -13632.999025] SLOW spr round 6 (radius: 10)
[05:12:41 -13631.725635] SLOW spr round 7 (radius: 5)
[05:13:16 -13631.723747] SLOW spr round 8 (radius: 10)
[05:13:48 -13631.264725] SLOW spr round 9 (radius: 5)
[05:14:23 -13631.264720] SLOW spr round 10 (radius: 10)
[05:14:54 -13631.264720] SLOW spr round 11 (radius: 15)
[05:15:36 -13628.616572] SLOW spr round 12 (radius: 5)
[05:16:13 -13628.616147] SLOW spr round 13 (radius: 10)
[05:16:45 -13628.616142] SLOW spr round 14 (radius: 15)
[05:17:27 -13628.616142] SLOW spr round 15 (radius: 20)
[05:18:26 -13625.817996] SLOW spr round 16 (radius: 5)
[05:19:04 -13615.387406] SLOW spr round 17 (radius: 5)
[05:19:38 -13576.871260] SLOW spr round 18 (radius: 5)
[05:20:09 -13575.098203] SLOW spr round 19 (radius: 5)
[05:20:38 -13575.098119] SLOW spr round 20 (radius: 10)
[05:21:07 -13566.559108] SLOW spr round 21 (radius: 5)
[05:21:43 -13564.703223] SLOW spr round 22 (radius: 5)
[05:22:14 -13564.699962] SLOW spr round 23 (radius: 10)
[05:22:44 -13564.699842] SLOW spr round 24 (radius: 15)
[05:23:27 -13564.699840] SLOW spr round 25 (radius: 20)
[05:24:24 -13564.478883] SLOW spr round 26 (radius: 5)
[05:25:01 -13563.925903] SLOW spr round 27 (radius: 5)
[05:25:34 -13563.925899] SLOW spr round 28 (radius: 10)
[05:26:04 -13563.925899] SLOW spr round 29 (radius: 15)
[05:26:47 -13563.925899] SLOW spr round 30 (radius: 20)
[05:27:44 -13563.925899] SLOW spr round 31 (radius: 25)
[05:28:48 -13563.925899] Model parameter optimization (eps = 0.100000)

[05:28:51] ML tree search #11, logLikelihood: -13563.771066

[05:28:51 -42578.939702] Initial branch length optimization
[05:28:51 -34678.259618] Model parameter optimization (eps = 10.000000)
[05:28:58 -34642.294437] AUTODETECT spr round 1 (radius: 5)
[05:29:25 -27319.002333] AUTODETECT spr round 2 (radius: 10)
[05:29:56 -22393.622218] AUTODETECT spr round 3 (radius: 15)
[05:30:33 -18460.919969] AUTODETECT spr round 4 (radius: 20)
[05:31:14 -17149.397129] AUTODETECT spr round 5 (radius: 25)
[05:32:01 -16549.953091] SPR radius for FAST iterations: 25 (autodetect)
[05:32:01 -16549.953091] Model parameter optimization (eps = 3.000000)
[05:32:07 -16488.055566] FAST spr round 1 (radius: 25)
[05:32:41 -14138.185086] FAST spr round 2 (radius: 25)
[05:33:11 -13668.734832] FAST spr round 3 (radius: 25)
[05:33:39 -13529.837088] FAST spr round 4 (radius: 25)
[05:34:05 -13498.590509] FAST spr round 5 (radius: 25)
[05:34:30 -13475.574605] FAST spr round 6 (radius: 25)
[05:34:54 -13475.032102] FAST spr round 7 (radius: 25)
[05:35:18 -13475.031920] Model parameter optimization (eps = 1.000000)
[05:35:24 -13472.350718] SLOW spr round 1 (radius: 5)
[05:35:55 -13468.465748] SLOW spr round 2 (radius: 5)
[05:36:24 -13468.464621] SLOW spr round 3 (radius: 10)
[05:36:53 -13467.998115] SLOW spr round 4 (radius: 5)
[05:37:29 -13467.993189] SLOW spr round 5 (radius: 10)
[05:38:01 -13467.993170] SLOW spr round 6 (radius: 15)
[05:38:41 -13467.892151] SLOW spr round 7 (radius: 5)
[05:39:18 -13467.892082] SLOW spr round 8 (radius: 10)
[05:39:50 -13467.892068] SLOW spr round 9 (radius: 15)
[05:40:30 -13467.892057] SLOW spr round 10 (radius: 20)
[05:41:24 -13467.842311] SLOW spr round 11 (radius: 25)
[05:42:24 -13390.776089] SLOW spr round 12 (radius: 5)
[05:43:02 -13375.598561] SLOW spr round 13 (radius: 5)
[05:43:35 -13375.598537] SLOW spr round 14 (radius: 10)
[05:44:06 -13375.598536] SLOW spr round 15 (radius: 15)
[05:44:48 -13352.571918] SLOW spr round 16 (radius: 5)
[05:45:25 -13352.570641] SLOW spr round 17 (radius: 10)
[05:45:57 -13352.570637] SLOW spr round 18 (radius: 15)
[05:46:37 -13352.570636] SLOW spr round 19 (radius: 20)
[05:47:30 -13348.565602] SLOW spr round 20 (radius: 5)
[05:48:07 -13348.565450] SLOW spr round 21 (radius: 10)
[05:48:40 -13348.565444] SLOW spr round 22 (radius: 15)
[05:49:20 -13348.565443] SLOW spr round 23 (radius: 20)
[05:50:14 -13348.565442] SLOW spr round 24 (radius: 25)
[05:51:13 -13348.565442] Model parameter optimization (eps = 0.100000)

[05:51:16] ML tree search #12, logLikelihood: -13348.436534

[05:51:16 -42935.218484] Initial branch length optimization
[05:51:17 -35253.462500] Model parameter optimization (eps = 10.000000)
[05:51:25 -35221.550527] AUTODETECT spr round 1 (radius: 5)
[05:51:52 -27449.256483] AUTODETECT spr round 2 (radius: 10)
[05:52:23 -22143.464724] AUTODETECT spr round 3 (radius: 15)
[05:52:57 -19679.718150] AUTODETECT spr round 4 (radius: 20)
[05:53:40 -17225.482449] AUTODETECT spr round 5 (radius: 25)
[05:54:26 -16662.101799] SPR radius for FAST iterations: 25 (autodetect)
[05:54:26 -16662.101799] Model parameter optimization (eps = 3.000000)
[05:54:31 -16590.525120] FAST spr round 1 (radius: 25)
[05:55:05 -14024.683053] FAST spr round 2 (radius: 25)
[05:55:33 -13733.505503] FAST spr round 3 (radius: 25)
[05:55:59 -13439.739894] FAST spr round 4 (radius: 25)
[05:56:26 -13400.725532] FAST spr round 5 (radius: 25)
[05:56:51 -13398.415028] FAST spr round 6 (radius: 25)
[05:57:15 -13398.414989] Model parameter optimization (eps = 1.000000)
[05:57:19 -13395.422245] SLOW spr round 1 (radius: 5)
[05:57:49 -13392.420059] SLOW spr round 2 (radius: 5)
[05:58:19 -13392.114078] SLOW spr round 3 (radius: 5)
[05:58:48 -13392.113501] SLOW spr round 4 (radius: 10)
[05:59:17 -13391.465711] SLOW spr round 5 (radius: 5)
[05:59:52 -13391.465640] SLOW spr round 6 (radius: 10)
[06:00:24 -13390.444483] SLOW spr round 7 (radius: 5)
[06:00:59 -13389.606243] SLOW spr round 8 (radius: 5)
[06:01:31 -13389.606165] SLOW spr round 9 (radius: 10)
[06:02:01 -13389.606152] SLOW spr round 10 (radius: 15)
[06:02:44 -13351.380565] SLOW spr round 11 (radius: 5)
[06:03:21 -13349.744601] SLOW spr round 12 (radius: 5)
[06:03:53 -13349.744509] SLOW spr round 13 (radius: 10)
[06:04:24 -13349.744499] SLOW spr round 14 (radius: 15)
[06:05:07 -13348.816628] SLOW spr round 15 (radius: 5)
[06:05:44 -13348.284167] SLOW spr round 16 (radius: 5)
[06:06:17 -13348.270405] SLOW spr round 17 (radius: 10)
[06:06:48 -13348.267756] SLOW spr round 18 (radius: 15)
[06:07:31 -13348.266948] SLOW spr round 19 (radius: 20)
[06:08:24 -13345.149182] SLOW spr round 20 (radius: 5)
[06:09:02 -13343.495512] SLOW spr round 21 (radius: 5)
[06:09:35 -13342.477402] SLOW spr round 22 (radius: 5)
[06:10:06 -13341.908463] SLOW spr round 23 (radius: 5)
[06:10:36 -13341.908399] SLOW spr round 24 (radius: 10)
[06:11:06 -13341.908393] SLOW spr round 25 (radius: 15)
[06:11:50 -13341.908388] SLOW spr round 26 (radius: 20)
[06:12:42 -13341.908384] SLOW spr round 27 (radius: 25)
[06:13:39 -13341.367138] SLOW spr round 28 (radius: 5)
[06:14:17 -13341.367134] SLOW spr round 29 (radius: 10)
[06:14:51 -13337.668562] SLOW spr round 30 (radius: 5)
[06:15:27 -13334.451074] SLOW spr round 31 (radius: 5)
[06:16:00 -13332.131433] SLOW spr round 32 (radius: 5)
[06:16:30 -13332.117953] SLOW spr round 33 (radius: 10)
[06:17:00 -13331.094807] SLOW spr round 34 (radius: 5)
[06:17:37 -13331.081147] SLOW spr round 35 (radius: 10)
[06:18:09 -13331.081128] SLOW spr round 36 (radius: 15)
[06:18:52 -13331.081121] SLOW spr round 37 (radius: 20)
[06:19:45 -13331.081115] SLOW spr round 38 (radius: 25)
[06:20:40 -13331.026272] Model parameter optimization (eps = 0.100000)

[06:20:42] ML tree search #13, logLikelihood: -13330.929650

[06:20:42 -42631.459858] Initial branch length optimization
[06:20:43 -34911.412503] Model parameter optimization (eps = 10.000000)
[06:20:50 -34869.081203] AUTODETECT spr round 1 (radius: 5)
[06:21:17 -27164.142364] AUTODETECT spr round 2 (radius: 10)
[06:21:49 -21928.459163] AUTODETECT spr round 3 (radius: 15)
[06:22:25 -18911.814606] AUTODETECT spr round 4 (radius: 20)
[06:23:03 -17425.839065] AUTODETECT spr round 5 (radius: 25)
[06:23:50 -16149.066878] SPR radius for FAST iterations: 25 (autodetect)
[06:23:50 -16149.066878] Model parameter optimization (eps = 3.000000)
[06:24:03 -16066.382973] FAST spr round 1 (radius: 25)
[06:24:34 -13885.154073] FAST spr round 2 (radius: 25)
[06:25:02 -13725.094234] FAST spr round 3 (radius: 25)
[06:25:28 -13711.532268] FAST spr round 4 (radius: 25)
[06:25:52 -13710.931447] FAST spr round 5 (radius: 25)
[06:26:16 -13710.931061] Model parameter optimization (eps = 1.000000)
[06:26:21 -13708.550983] SLOW spr round 1 (radius: 5)
[06:26:52 -13701.955582] SLOW spr round 2 (radius: 5)
[06:27:21 -13701.639872] SLOW spr round 3 (radius: 5)
[06:27:50 -13701.638450] SLOW spr round 4 (radius: 10)
[06:28:20 -13699.939567] SLOW spr round 5 (radius: 5)
[06:28:56 -13699.939516] SLOW spr round 6 (radius: 10)
[06:29:28 -13699.394270] SLOW spr round 7 (radius: 5)
[06:30:04 -13699.393625] SLOW spr round 8 (radius: 10)
[06:30:35 -13699.393625] SLOW spr round 9 (radius: 15)
[06:31:18 -13698.306165] SLOW spr round 10 (radius: 5)
[06:31:55 -13698.306103] SLOW spr round 11 (radius: 10)
[06:32:28 -13698.306097] SLOW spr round 12 (radius: 15)
[06:33:10 -13698.306097] SLOW spr round 13 (radius: 20)
[06:34:04 -13694.688266] SLOW spr round 14 (radius: 5)
[06:34:42 -13690.920055] SLOW spr round 15 (radius: 5)
[06:35:16 -13690.876550] SLOW spr round 16 (radius: 10)
[06:35:48 -13686.073138] SLOW spr round 17 (radius: 5)
[06:36:24 -13685.646207] SLOW spr round 18 (radius: 5)
[06:36:57 -13685.544413] SLOW spr round 19 (radius: 5)
[06:37:27 -13685.543853] SLOW spr round 20 (radius: 10)
[06:37:57 -13685.543719] SLOW spr round 21 (radius: 15)
[06:38:40 -13685.543681] SLOW spr round 22 (radius: 20)
[06:39:32 -13684.042847] SLOW spr round 23 (radius: 5)
[06:40:10 -13683.666919] SLOW spr round 24 (radius: 5)
[06:40:45 -13682.956427] SLOW spr round 25 (radius: 5)
[06:41:17 -13681.291199] SLOW spr round 26 (radius: 5)
[06:41:48 -13624.251783] SLOW spr round 27 (radius: 5)
[06:42:19 -13585.278396] SLOW spr round 28 (radius: 5)
[06:42:48 -13584.335239] SLOW spr round 29 (radius: 5)
[06:43:17 -13584.335129] SLOW spr round 30 (radius: 10)
[06:43:47 -13582.959959] SLOW spr round 31 (radius: 5)
[06:44:23 -13582.675902] SLOW spr round 32 (radius: 5)
[06:44:55 -13582.674789] SLOW spr round 33 (radius: 10)
[06:45:25 -13582.674545] SLOW spr round 34 (radius: 15)
[06:46:10 -13582.674462] SLOW spr round 35 (radius: 20)
[06:47:05 -13582.674434] SLOW spr round 36 (radius: 25)
[06:48:03 -13532.734357] SLOW spr round 37 (radius: 5)
[06:48:42 -13496.706509] SLOW spr round 38 (radius: 5)
[06:49:16 -13496.702353] SLOW spr round 39 (radius: 10)
[06:49:47 -13496.702349] SLOW spr round 40 (radius: 15)
[06:50:31 -13496.702349] SLOW spr round 41 (radius: 20)
[06:51:28 -13496.702349] SLOW spr round 42 (radius: 25)
[06:52:25 -13494.783763] SLOW spr round 43 (radius: 5)
[06:53:04 -13490.724841] SLOW spr round 44 (radius: 5)
[06:53:37 -13490.724755] SLOW spr round 45 (radius: 10)
[06:54:08 -13490.724750] SLOW spr round 46 (radius: 15)
[06:54:54 -13490.724749] SLOW spr round 47 (radius: 20)
[06:55:53 -13447.079982] SLOW spr round 48 (radius: 5)
[06:56:33 -13321.414201] SLOW spr round 49 (radius: 5)
[06:57:08 -13320.435596] SLOW spr round 50 (radius: 5)
[06:57:39 -13320.431386] SLOW spr round 51 (radius: 10)
[06:58:09 -13320.431318] SLOW spr round 52 (radius: 15)
[06:58:55 -13320.431313] SLOW spr round 53 (radius: 20)
[06:59:53 -13320.431312] SLOW spr round 54 (radius: 25)
[07:00:54 -13315.452048] SLOW spr round 55 (radius: 5)
[07:01:34 -13311.062559] SLOW spr round 56 (radius: 5)
[07:02:09 -13307.947503] SLOW spr round 57 (radius: 5)
[07:02:40 -13307.922855] SLOW spr round 58 (radius: 10)
[07:03:11 -13305.253527] SLOW spr round 59 (radius: 5)
[07:03:47 -13305.128596] SLOW spr round 60 (radius: 5)
[07:04:19 -13305.126320] SLOW spr round 61 (radius: 10)
[07:04:50 -13305.126008] SLOW spr round 62 (radius: 15)
[07:05:35 -13305.125961] SLOW spr round 63 (radius: 20)
[07:06:33 -13305.125952] SLOW spr round 64 (radius: 25)
[07:07:34 -13304.730515] SLOW spr round 65 (radius: 5)
[07:08:13 -13304.728872] SLOW spr round 66 (radius: 10)
[07:08:47 -13304.728578] SLOW spr round 67 (radius: 15)
[07:09:30 -13304.728516] SLOW spr round 68 (radius: 20)
[07:10:30 -13304.728502] SLOW spr round 69 (radius: 25)
[07:11:31 -13304.728498] Model parameter optimization (eps = 0.100000)

[07:11:35] ML tree search #14, logLikelihood: -13302.491428

[07:11:35 -42628.409298] Initial branch length optimization
[07:11:36 -34790.330756] Model parameter optimization (eps = 10.000000)
[07:11:43 -34758.342019] AUTODETECT spr round 1 (radius: 5)
[07:12:11 -27838.036115] AUTODETECT spr round 2 (radius: 10)
[07:12:43 -23328.752846] AUTODETECT spr round 3 (radius: 15)
[07:13:19 -19893.766014] AUTODETECT spr round 4 (radius: 20)
[07:14:00 -17541.697327] AUTODETECT spr round 5 (radius: 25)
[07:14:40 -16217.750626] SPR radius for FAST iterations: 25 (autodetect)
[07:14:40 -16217.750626] Model parameter optimization (eps = 3.000000)
[07:14:45 -16168.673768] FAST spr round 1 (radius: 25)
[07:15:18 -13870.929515] FAST spr round 2 (radius: 25)
[07:15:47 -13520.520983] FAST spr round 3 (radius: 25)
[07:16:13 -13456.173059] FAST spr round 4 (radius: 25)
[07:16:39 -13448.028970] FAST spr round 5 (radius: 25)
[07:17:04 -13447.557855] FAST spr round 6 (radius: 25)
[07:17:28 -13447.557830] Model parameter optimization (eps = 1.000000)
[07:17:32 -13441.572350] SLOW spr round 1 (radius: 5)
[07:18:03 -13431.621699] SLOW spr round 2 (radius: 5)
[07:18:34 -13430.443540] SLOW spr round 3 (radius: 5)
[07:19:04 -13430.442634] SLOW spr round 4 (radius: 10)
[07:19:35 -13430.022849] SLOW spr round 5 (radius: 5)
[07:20:11 -13429.048153] SLOW spr round 6 (radius: 5)
[07:20:43 -13428.212725] SLOW spr round 7 (radius: 5)
[07:21:14 -13428.212689] SLOW spr round 8 (radius: 10)
[07:21:45 -13428.212689] SLOW spr round 9 (radius: 15)
[07:22:29 -13407.814679] SLOW spr round 10 (radius: 5)
[07:23:07 -13391.884705] SLOW spr round 11 (radius: 5)
[07:23:41 -13391.491204] SLOW spr round 12 (radius: 5)
[07:24:13 -13391.233986] SLOW spr round 13 (radius: 5)
[07:24:43 -13391.233557] SLOW spr round 14 (radius: 10)
[07:25:14 -13389.802946] SLOW spr round 15 (radius: 5)
[07:25:51 -13384.760331] SLOW spr round 16 (radius: 5)
[07:26:23 -13384.712506] SLOW spr round 17 (radius: 10)
[07:26:54 -13384.711166] SLOW spr round 18 (radius: 15)
[07:27:36 -13384.710941] SLOW spr round 19 (radius: 20)
[07:28:27 -13383.056791] SLOW spr round 20 (radius: 5)
[07:29:06 -13380.862271] SLOW spr round 21 (radius: 5)
[07:29:40 -13380.319860] SLOW spr round 22 (radius: 5)
[07:30:12 -13380.319660] SLOW spr round 23 (radius: 10)
[07:30:42 -13380.319625] SLOW spr round 24 (radius: 15)
[07:31:25 -13380.319618] SLOW spr round 25 (radius: 20)
[07:32:15 -13379.109514] SLOW spr round 26 (radius: 5)
[07:32:53 -13377.210269] SLOW spr round 27 (radius: 5)
[07:33:27 -13377.210268] SLOW spr round 28 (radius: 10)
[07:33:58 -13377.210268] SLOW spr round 29 (radius: 15)
[07:34:39 -13377.210268] SLOW spr round 30 (radius: 20)
[07:35:29 -13377.210268] SLOW spr round 31 (radius: 25)
[07:36:25 -13377.210268] Model parameter optimization (eps = 0.100000)

[07:36:29] ML tree search #15, logLikelihood: -13376.967322

[07:36:29 -42866.450272] Initial branch length optimization
[07:36:29 -35139.456408] Model parameter optimization (eps = 10.000000)
[07:36:37 -35097.448703] AUTODETECT spr round 1 (radius: 5)
[07:37:05 -27593.811763] AUTODETECT spr round 2 (radius: 10)
[07:37:39 -21452.562327] AUTODETECT spr round 3 (radius: 15)
[07:38:16 -18713.118262] AUTODETECT spr round 4 (radius: 20)
[07:38:57 -16723.668420] AUTODETECT spr round 5 (radius: 25)
[07:39:50 -16119.539039] SPR radius for FAST iterations: 25 (autodetect)
[07:39:50 -16119.539039] Model parameter optimization (eps = 3.000000)
[07:39:57 -16025.602090] FAST spr round 1 (radius: 25)
[07:40:30 -13618.099384] FAST spr round 2 (radius: 25)
[07:40:59 -13454.904773] FAST spr round 3 (radius: 25)
[07:41:25 -13449.006983] FAST spr round 4 (radius: 25)
[07:41:51 -13447.934053] FAST spr round 5 (radius: 25)
[07:42:15 -13447.933389] Model parameter optimization (eps = 1.000000)
[07:42:17 -13447.128849] SLOW spr round 1 (radius: 5)
[07:42:48 -13439.625085] SLOW spr round 2 (radius: 5)
[07:43:19 -13438.722476] SLOW spr round 3 (radius: 5)
[07:43:49 -13438.721952] SLOW spr round 4 (radius: 10)
[07:44:18 -13438.721899] SLOW spr round 5 (radius: 15)
[07:45:03 -13428.783762] SLOW spr round 6 (radius: 5)
[07:45:42 -13409.044899] SLOW spr round 7 (radius: 5)
[07:46:15 -13407.379784] SLOW spr round 8 (radius: 5)
[07:46:45 -13407.379503] SLOW spr round 9 (radius: 10)
[07:47:16 -13403.367598] SLOW spr round 10 (radius: 5)
[07:47:52 -13403.366854] SLOW spr round 11 (radius: 10)
[07:48:24 -13403.366674] SLOW spr round 12 (radius: 15)
[07:49:07 -13403.366584] SLOW spr round 13 (radius: 20)
[07:50:05 -13400.098948] SLOW spr round 14 (radius: 5)
[07:50:44 -13398.594950] SLOW spr round 15 (radius: 5)
[07:51:18 -13398.591910] SLOW spr round 16 (radius: 10)
[07:51:49 -13398.171521] SLOW spr round 17 (radius: 5)
[07:52:25 -13386.795433] SLOW spr round 18 (radius: 5)
[07:52:58 -13386.790525] SLOW spr round 19 (radius: 10)
[07:53:28 -13386.790210] SLOW spr round 20 (radius: 15)
[07:54:12 -13386.790177] SLOW spr round 21 (radius: 20)
[07:55:10 -13385.492852] SLOW spr round 22 (radius: 5)
[07:55:48 -13384.875079] SLOW spr round 23 (radius: 5)
[07:56:21 -13384.874971] SLOW spr round 24 (radius: 10)
[07:56:52 -13384.874968] SLOW spr round 25 (radius: 15)
[07:57:37 -13384.874967] SLOW spr round 26 (radius: 20)
[07:58:36 -13384.874967] SLOW spr round 27 (radius: 25)
[07:59:44 -13383.209375] SLOW spr round 28 (radius: 5)
[08:00:23 -13383.209284] SLOW spr round 29 (radius: 10)
[08:00:57 -13382.735737] SLOW spr round 30 (radius: 5)
[08:01:32 -13382.733986] SLOW spr round 31 (radius: 10)
[08:02:04 -13382.733986] SLOW spr round 32 (radius: 15)
[08:02:47 -13382.733986] SLOW spr round 33 (radius: 20)
[08:03:46 -13382.733986] SLOW spr round 34 (radius: 25)
[08:04:54 -13382.624762] SLOW spr round 35 (radius: 5)
[08:05:32 -13382.624761] SLOW spr round 36 (radius: 10)
[08:06:06 -13382.624761] SLOW spr round 37 (radius: 15)
[08:06:48 -13382.624761] SLOW spr round 38 (radius: 20)
[08:07:47 -13382.624761] SLOW spr round 39 (radius: 25)
[08:08:55 -13382.624761] Model parameter optimization (eps = 0.100000)

[08:08:58] ML tree search #16, logLikelihood: -13382.357494

[08:08:58 -42110.256407] Initial branch length optimization
[08:08:58 -34793.008858] Model parameter optimization (eps = 10.000000)
[08:09:08 -34762.909492] AUTODETECT spr round 1 (radius: 5)
[08:09:35 -27271.603109] AUTODETECT spr round 2 (radius: 10)
[08:10:07 -21899.989807] AUTODETECT spr round 3 (radius: 15)
[08:10:42 -18693.919955] AUTODETECT spr round 4 (radius: 20)
[08:11:19 -17913.988995] AUTODETECT spr round 5 (radius: 25)
[08:12:01 -17338.657460] SPR radius for FAST iterations: 25 (autodetect)
[08:12:01 -17338.657460] Model parameter optimization (eps = 3.000000)
[08:12:07 -17280.368496] FAST spr round 1 (radius: 25)
[08:12:42 -14121.376821] FAST spr round 2 (radius: 25)
[08:13:10 -13664.367231] FAST spr round 3 (radius: 25)
[08:13:37 -13563.979225] FAST spr round 4 (radius: 25)
[08:14:04 -13509.719357] FAST spr round 5 (radius: 25)
[08:14:31 -13498.190969] FAST spr round 6 (radius: 25)
[08:14:56 -13497.668196] FAST spr round 7 (radius: 25)
[08:15:20 -13497.665356] Model parameter optimization (eps = 1.000000)
[08:15:27 -13495.032971] SLOW spr round 1 (radius: 5)
[08:15:58 -13487.613290] SLOW spr round 2 (radius: 5)
[08:16:29 -13485.118882] SLOW spr round 3 (radius: 5)
[08:17:00 -13485.117170] SLOW spr round 4 (radius: 10)
[08:17:30 -13485.116800] SLOW spr round 5 (radius: 15)
[08:18:17 -13484.208007] SLOW spr round 6 (radius: 5)
[08:18:56 -13483.420542] SLOW spr round 7 (radius: 5)
[08:19:29 -13483.420481] SLOW spr round 8 (radius: 10)
[08:20:01 -13481.972013] SLOW spr round 9 (radius: 5)
[08:20:37 -13481.972001] SLOW spr round 10 (radius: 10)
[08:21:10 -13481.971999] SLOW spr round 11 (radius: 15)
[08:21:55 -13481.857586] SLOW spr round 12 (radius: 5)
[08:22:33 -13481.856554] SLOW spr round 13 (radius: 10)
[08:23:07 -13481.856497] SLOW spr round 14 (radius: 15)
[08:23:51 -13481.772760] SLOW spr round 15 (radius: 20)
[08:24:52 -13478.261584] SLOW spr round 16 (radius: 5)
[08:25:30 -13477.827510] SLOW spr round 17 (radius: 5)
[08:26:05 -13477.131755] SLOW spr round 18 (radius: 5)
[08:26:37 -13477.131142] SLOW spr round 19 (radius: 10)
[08:27:08 -13477.131033] SLOW spr round 20 (radius: 15)
[08:27:55 -13476.612145] SLOW spr round 21 (radius: 5)
[08:28:33 -13476.573350] SLOW spr round 22 (radius: 10)
[08:29:06 -13476.573341] SLOW spr round 23 (radius: 15)
[08:29:50 -13476.424514] SLOW spr round 24 (radius: 5)
[08:30:28 -13476.424507] SLOW spr round 25 (radius: 10)
[08:31:01 -13476.424507] SLOW spr round 26 (radius: 15)
[08:31:45 -13476.424507] SLOW spr round 27 (radius: 20)
[08:32:45 -13476.390557] SLOW spr round 28 (radius: 25)
[08:33:54 -13380.156718] SLOW spr round 29 (radius: 5)
[08:34:34 -13271.942196] SLOW spr round 30 (radius: 5)
[08:35:10 -13264.366229] SLOW spr round 31 (radius: 5)
[08:35:42 -13264.362933] SLOW spr round 32 (radius: 10)
[08:36:13 -13263.828235] SLOW spr round 33 (radius: 5)
[08:36:50 -13263.827079] SLOW spr round 34 (radius: 10)
[08:37:23 -13263.827045] SLOW spr round 35 (radius: 15)
[08:38:11 -13263.827033] SLOW spr round 36 (radius: 20)
[08:39:19 -13263.827030] SLOW spr round 37 (radius: 25)
[08:40:33 -13263.827028] Model parameter optimization (eps = 0.100000)

[08:40:36] ML tree search #17, logLikelihood: -13263.333462

[08:40:36 -42335.466245] Initial branch length optimization
[08:40:37 -34733.723474] Model parameter optimization (eps = 10.000000)
[08:40:43 -34691.798657] AUTODETECT spr round 1 (radius: 5)
[08:41:10 -27293.684493] AUTODETECT spr round 2 (radius: 10)
[08:41:43 -22097.622058] AUTODETECT spr round 3 (radius: 15)
[08:42:20 -19301.815138] AUTODETECT spr round 4 (radius: 20)
[08:42:59 -17448.650754] AUTODETECT spr round 5 (radius: 25)
[08:43:47 -16627.128647] SPR radius for FAST iterations: 25 (autodetect)
[08:43:47 -16627.128647] Model parameter optimization (eps = 3.000000)
[08:43:55 -16527.916080] FAST spr round 1 (radius: 25)
[08:44:28 -13991.547104] FAST spr round 2 (radius: 25)
[08:44:58 -13745.045144] FAST spr round 3 (radius: 25)
[08:45:26 -13569.825131] FAST spr round 4 (radius: 25)
[08:45:53 -13428.908585] FAST spr round 5 (radius: 25)
[08:46:18 -13418.129912] FAST spr round 6 (radius: 25)
[08:46:43 -13418.128451] Model parameter optimization (eps = 1.000000)
[08:46:48 -13415.692051] SLOW spr round 1 (radius: 5)
[08:47:19 -13410.251896] SLOW spr round 2 (radius: 5)
[08:47:49 -13408.217142] SLOW spr round 3 (radius: 5)
[08:48:19 -13407.848058] SLOW spr round 4 (radius: 5)
[08:48:49 -13407.847533] SLOW spr round 5 (radius: 10)
[08:49:19 -13407.847512] SLOW spr round 6 (radius: 15)
[08:50:07 -13406.179300] SLOW spr round 7 (radius: 5)
[08:50:45 -13406.178346] SLOW spr round 8 (radius: 10)
[08:51:19 -13406.178295] SLOW spr round 9 (radius: 15)
[08:52:03 -13406.178292] SLOW spr round 10 (radius: 20)
[08:53:05 -13406.178289] SLOW spr round 11 (radius: 25)
[08:54:15 -13348.527528] SLOW spr round 12 (radius: 5)
[08:54:56 -13287.594026] SLOW spr round 13 (radius: 5)
[08:55:30 -13285.406688] SLOW spr round 14 (radius: 5)
[08:56:02 -13285.404177] SLOW spr round 15 (radius: 10)
[08:56:32 -13285.403955] SLOW spr round 16 (radius: 15)
[08:57:20 -13285.056289] SLOW spr round 17 (radius: 5)
[08:57:58 -13274.179842] SLOW spr round 18 (radius: 5)
[08:58:31 -13274.142563] SLOW spr round 19 (radius: 10)
[08:59:03 -13272.347005] SLOW spr round 20 (radius: 5)
[08:59:39 -13272.346836] SLOW spr round 21 (radius: 10)
[09:00:11 -13272.103984] SLOW spr round 22 (radius: 5)
[09:00:47 -13272.103946] SLOW spr round 23 (radius: 10)
[09:01:19 -13272.103944] SLOW spr round 24 (radius: 15)
[09:02:04 -13272.103943] SLOW spr round 25 (radius: 20)
[09:03:08 -13272.103941] SLOW spr round 26 (radius: 25)
[09:04:18 -13272.103941] Model parameter optimization (eps = 0.100000)

[09:04:21] ML tree search #18, logLikelihood: -13272.086172

[09:04:21 -42509.643240] Initial branch length optimization
[09:04:21 -35045.213659] Model parameter optimization (eps = 10.000000)
[09:04:27 -35010.287081] AUTODETECT spr round 1 (radius: 5)
[09:04:55 -27693.705895] AUTODETECT spr round 2 (radius: 10)
[09:05:27 -22718.561541] AUTODETECT spr round 3 (radius: 15)
[09:06:01 -20277.253557] AUTODETECT spr round 4 (radius: 20)
[09:06:39 -18355.156554] AUTODETECT spr round 5 (radius: 25)
[09:07:26 -16663.653538] SPR radius for FAST iterations: 25 (autodetect)
[09:07:26 -16663.653538] Model parameter optimization (eps = 3.000000)
[09:07:31 -16582.351989] FAST spr round 1 (radius: 25)
[09:08:07 -13567.782465] FAST spr round 2 (radius: 25)
[09:08:35 -13300.645876] FAST spr round 3 (radius: 25)
[09:09:02 -13273.309826] FAST spr round 4 (radius: 25)
[09:09:28 -13266.286009] FAST spr round 5 (radius: 25)
[09:09:53 -13264.510235] FAST spr round 6 (radius: 25)
[09:10:18 -13264.510003] Model parameter optimization (eps = 1.000000)
[09:10:23 -13261.015231] SLOW spr round 1 (radius: 5)
[09:10:53 -13257.543806] SLOW spr round 2 (radius: 5)
[09:11:24 -13257.022820] SLOW spr round 3 (radius: 5)
[09:11:54 -13257.022452] SLOW spr round 4 (radius: 10)
[09:12:25 -13255.181146] SLOW spr round 5 (radius: 5)
[09:13:03 -13252.995363] SLOW spr round 6 (radius: 5)
[09:13:36 -13252.994277] SLOW spr round 7 (radius: 10)
[09:14:09 -13249.556625] SLOW spr round 8 (radius: 5)
[09:14:46 -13248.680946] SLOW spr round 9 (radius: 5)
[09:15:19 -13248.679858] SLOW spr round 10 (radius: 10)
[09:15:50 -13248.679419] SLOW spr round 11 (radius: 15)
[09:16:35 -13244.241778] SLOW spr round 12 (radius: 5)
[09:17:12 -13244.241401] SLOW spr round 13 (radius: 10)
[09:17:46 -13244.241224] SLOW spr round 14 (radius: 15)
[09:18:27 -13244.241101] SLOW spr round 15 (radius: 20)
[09:19:25 -13243.616555] SLOW spr round 16 (radius: 5)
[09:20:03 -13243.568490] SLOW spr round 17 (radius: 10)
[09:20:37 -13243.568414] SLOW spr round 18 (radius: 15)
[09:21:18 -13243.568343] SLOW spr round 19 (radius: 20)
[09:22:16 -13243.568278] SLOW spr round 20 (radius: 25)
[09:23:23 -13243.568218] Model parameter optimization (eps = 0.100000)

[09:23:26] ML tree search #19, logLikelihood: -13243.408891

[09:23:26 -42594.603082] Initial branch length optimization
[09:23:26 -34562.740110] Model parameter optimization (eps = 10.000000)
[09:23:33 -34530.959172] AUTODETECT spr round 1 (radius: 5)
[09:24:00 -27643.260194] AUTODETECT spr round 2 (radius: 10)
[09:24:33 -22029.037987] AUTODETECT spr round 3 (radius: 15)
[09:25:07 -18859.474499] AUTODETECT spr round 4 (radius: 20)
[09:25:47 -17219.248757] AUTODETECT spr round 5 (radius: 25)
[09:26:28 -16281.448088] SPR radius for FAST iterations: 25 (autodetect)
[09:26:28 -16281.448088] Model parameter optimization (eps = 3.000000)
[09:26:36 -16229.598125] FAST spr round 1 (radius: 25)
[09:27:10 -14214.467080] FAST spr round 2 (radius: 25)
[09:27:38 -14012.776082] FAST spr round 3 (radius: 25)
[09:28:05 -13923.190067] FAST spr round 4 (radius: 25)
[09:28:31 -13918.941861] FAST spr round 5 (radius: 25)
[09:28:55 -13918.941677] Model parameter optimization (eps = 1.000000)
[09:29:00 -13917.091226] SLOW spr round 1 (radius: 5)
[09:29:31 -13913.622792] SLOW spr round 2 (radius: 5)
[09:30:02 -13911.404425] SLOW spr round 3 (radius: 5)
[09:30:31 -13911.403173] SLOW spr round 4 (radius: 10)
[09:31:01 -13911.403125] SLOW spr round 5 (radius: 15)
[09:31:47 -13861.409545] SLOW spr round 6 (radius: 5)
[09:32:24 -13857.059169] SLOW spr round 7 (radius: 5)
[09:32:57 -13856.873407] SLOW spr round 8 (radius: 5)
[09:33:28 -13856.873046] SLOW spr round 9 (radius: 10)
[09:33:58 -13856.830148] SLOW spr round 10 (radius: 15)
[09:34:42 -13856.610124] SLOW spr round 11 (radius: 5)
[09:35:19 -13856.609608] SLOW spr round 12 (radius: 10)
[09:35:52 -13856.609396] SLOW spr round 13 (radius: 15)
[09:36:33 -13856.559792] SLOW spr round 14 (radius: 20)
[09:37:26 -13855.076095] SLOW spr round 15 (radius: 5)
[09:38:05 -13847.091324] SLOW spr round 16 (radius: 5)
[09:38:39 -13845.913822] SLOW spr round 17 (radius: 5)
[09:39:11 -13841.236636] SLOW spr round 18 (radius: 5)
[09:39:42 -13838.309559] SLOW spr round 19 (radius: 5)
[09:40:14 -13777.547033] SLOW spr round 20 (radius: 5)
[09:40:44 -13768.809945] SLOW spr round 21 (radius: 5)
[09:41:13 -13768.809692] SLOW spr round 22 (radius: 10)
[09:41:43 -13709.751511] SLOW spr round 23 (radius: 5)
[09:42:20 -13697.180428] SLOW spr round 24 (radius: 5)
[09:42:53 -13697.178535] SLOW spr round 25 (radius: 10)
[09:43:24 -13694.564422] SLOW spr round 26 (radius: 5)
[09:44:01 -13689.969121] SLOW spr round 27 (radius: 5)
[09:44:34 -13689.653291] SLOW spr round 28 (radius: 5)
[09:45:04 -13689.652575] SLOW spr round 29 (radius: 10)
[09:45:35 -13688.532851] SLOW spr round 30 (radius: 5)
[09:46:11 -13687.864150] SLOW spr round 31 (radius: 5)
[09:46:44 -13687.125148] SLOW spr round 32 (radius: 5)
[09:47:15 -13686.408152] SLOW spr round 33 (radius: 5)
[09:47:45 -13686.403366] SLOW spr round 34 (radius: 10)
[09:48:15 -13686.402732] SLOW spr round 35 (radius: 15)
[09:49:02 -13685.967818] SLOW spr round 36 (radius: 5)
[09:49:39 -13684.898333] SLOW spr round 37 (radius: 5)
[09:50:12 -13684.897968] SLOW spr round 38 (radius: 10)
[09:50:43 -13684.897951] SLOW spr round 39 (radius: 15)
[09:51:28 -13678.179045] SLOW spr round 40 (radius: 5)
[09:52:06 -13670.818669] SLOW spr round 41 (radius: 5)
[09:52:39 -13670.818039] SLOW spr round 42 (radius: 10)
[09:53:10 -13670.818024] SLOW spr round 43 (radius: 15)
[09:53:55 -13670.818023] SLOW spr round 44 (radius: 20)
[09:54:52 -13670.818020] SLOW spr round 45 (radius: 25)
[09:55:56 -13644.797817] SLOW spr round 46 (radius: 5)
[09:56:35 -13638.518991] SLOW spr round 47 (radius: 5)
[09:57:10 -13636.927172] SLOW spr round 48 (radius: 5)
[09:57:42 -13636.869333] SLOW spr round 49 (radius: 10)
[09:58:12 -13633.471574] SLOW spr round 50 (radius: 5)
[09:58:49 -13632.898765] SLOW spr round 51 (radius: 5)
[09:59:21 -13632.757868] SLOW spr round 52 (radius: 5)
[09:59:52 -13632.757702] SLOW spr round 53 (radius: 10)
[10:00:22 -13632.757626] SLOW spr round 54 (radius: 15)
[10:01:08 -13621.637699] SLOW spr round 55 (radius: 5)
[10:01:47 -13553.463710] SLOW spr round 56 (radius: 5)
[10:02:20 -13553.463405] SLOW spr round 57 (radius: 10)
[10:02:52 -13553.463343] SLOW spr round 58 (radius: 15)
[10:03:36 -13553.463329] SLOW spr round 59 (radius: 20)
[10:04:33 -13511.020502] SLOW spr round 60 (radius: 5)
[10:05:12 -13509.599133] SLOW spr round 61 (radius: 5)
[10:05:45 -13509.598021] SLOW spr round 62 (radius: 10)
[10:06:17 -13509.597665] SLOW spr round 63 (radius: 15)
[10:07:01 -13509.597553] SLOW spr round 64 (radius: 20)
[10:07:58 -13509.597516] SLOW spr round 65 (radius: 25)
[10:09:01 -13505.861844] SLOW spr round 66 (radius: 5)
[10:09:42 -13370.161816] SLOW spr round 67 (radius: 5)
[10:10:17 -13331.187355] SLOW spr round 68 (radius: 5)
[10:10:49 -13331.156631] SLOW spr round 69 (radius: 10)
[10:11:19 -13329.960970] SLOW spr round 70 (radius: 5)
[10:11:55 -13329.959374] SLOW spr round 71 (radius: 10)
[10:12:27 -13329.959062] SLOW spr round 72 (radius: 15)
[10:13:10 -13328.156345] SLOW spr round 73 (radius: 5)
[10:13:49 -13327.001559] SLOW spr round 74 (radius: 5)
[10:14:22 -13324.895690] SLOW spr round 75 (radius: 5)
[10:14:53 -13324.873016] SLOW spr round 76 (radius: 10)
[10:15:24 -13324.872976] SLOW spr round 77 (radius: 15)
[10:16:09 -13324.872946] SLOW spr round 78 (radius: 20)
[10:17:06 -13324.872920] SLOW spr round 79 (radius: 25)
[10:18:11 -13324.872897] Model parameter optimization (eps = 0.100000)

[10:18:18] ML tree search #20, logLikelihood: -13324.492786


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.200007,0.307347) (0.174997,0.492863) (0.399995,1.010248) (0.225001,1.991922) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -13243.408891

AIC score: 28916.817782 / AICc score: 2983796.817782 / BIC score: 30968.806319
Free parameters (model + branch lengths): 1215

WARNING: Number of free parameters (K=1215) is larger than alignment size (n=40).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 117 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01861/3_mltree/P01861.raxml.log

Analysis started: 30-Jun-2021 17:18:17 / finished: 01-Jul-2021 03:36:35

Elapsed time: 37098.196 seconds