RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 13-Jul-2021 22:26:52 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/2_msa/P01772_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/2_msa/P01772_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 88 sites

WARNING: Sequences tr_A0A075B5T2_A0A075B5T2_MOUSE_10090 and sp_P01796_HVM27_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5T2_A0A075B5T2_MOUSE_10090 and sp_P01797_HVM28_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A075B5T2_A0A075B5T2_MOUSE_10090 and sp_P01801_HVM32_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01787_HVM18_MOUSE_10090 and sp_P01788_HVM19_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01787_HVM18_MOUSE_10090 and sp_P01789_HVM20_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01787_HVM18_MOUSE_10090 and sp_P01791_HVM22_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01787_HVM18_MOUSE_10090 and sp_P01792_HVM23_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01806_HVM36_MOUSE_10090 and sp_P01807_HVM37_MOUSE_10090 are exactly identical!
WARNING: Sequences sp_P01806_HVM36_MOUSE_10090 and sp_P01808_HVM38_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_G1P3R4_G1P3R4_MYOLU_59463 and tr_G1PZN6_G1PZN6_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1Q3T5_G1Q3T5_MYOLU_59463 and tr_G1QE14_G1QE14_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1QBP2_G1QBP2_MYOLU_59463 and tr_G1QG99_G1QG99_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A2I2YUS0_A0A2I2YUS0_GORGO_9595 and tr_A0A2I3TKW9_A0A2I3TKW9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YUS0_A0A2I2YUS0_GORGO_9595 and tr_A0A2R8Z8X7_A0A2R8Z8X7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2ZBV0_A0A2I2ZBV0_GORGO_9595 and tr_A0A2I3SLP9_A0A2I3SLP9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZBV0_A0A2I2ZBV0_GORGO_9595 and tr_A0A2R8ZD36_A0A2R8ZD36_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2ZCN6_A0A2I2ZCN6_GORGO_9595 and sp_P01743_HV146_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3RLU3_A0A2I3RLU3_PANTR_9598 and tr_A0A2I3TTC1_A0A2I3TTC1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3RT04_A0A2I3RT04_PANTR_9598 and tr_A0A2R9BGQ2_A0A2R9BGQ2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2RIL7_H2RIL7_PANTR_9598 and tr_A0A2R8ZD60_A0A2R8ZD60_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6QNW3_F6QNW3_ORNAN_9258 and tr_K7EEU0_K7EEU0_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_F6QU73_F6QU73_ORNAN_9258 and tr_F6QU84_F6QU84_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_F6UMB3_F6UMB3_ORNAN_9258 and tr_F6UMB9_F6UMB9_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_F6UMB3_F6UMB3_ORNAN_9258 and tr_F6WX17_F6WX17_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_F7B7J7_F7B7J7_ORNAN_9258 and tr_F7E071_F7E071_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_F7A4V4_F7A4V4_MONDO_13616 and tr_F7DQ70_F7DQ70_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F7ASP4_F7ASP4_MONDO_13616 and tr_K7DYQ1_K7DYQ1_MONDO_13616 are exactly identical!
WARNING: Sequences tr_A0A0G2JT95_A0A0G2JT95_RAT_10116 and tr_M0R8Q9_M0R8Q9_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A0G2JYX2_A0A0G2JYX2_RAT_10116 and tr_M0R5S4_M0R5S4_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A0G2K758_A0A0G2K758_RAT_10116 and tr_D3ZE00_D3ZE00_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A0G2K758_A0A0G2K758_RAT_10116 and tr_F1M0H4_F1M0H4_RAT_10116 are exactly identical!
WARNING: Sequences sp_P01768_HV330_HUMAN_9606 and sp_P01772_HV333_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P01768_HV330_HUMAN_9606 and sp_P0DP03_HV335_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5QSP7_A0A1D5QSP7_MACMU_9544 and tr_A0A2K5NAF2_A0A2K5NAF2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5RHL0_A0A1D5RHL0_MACMU_9544 and tr_A0A2I3LGI1_A0A2I3LGI1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5RHL0_A0A1D5RHL0_MACMU_9544 and tr_A0A2K6D0G6_A0A2K6D0G6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5RHL0_A0A1D5RHL0_MACMU_9544 and tr_A0A2K5XSZ2_A0A2K5XSZ2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H9H2S9_H9H2S9_MACMU_9544 and tr_G7P8Z3_G7P8Z3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H9H495_H9H495_MACMU_9544 and tr_G8F4H4_G8F4H4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1B8Y633_A0A1B8Y633_XENTR_8364 and tr_L7N2R5_L7N2R5_XENTR_8364 are exactly identical!
WARNING: Sequences tr_A0A1B8Y639_A0A1B8Y639_XENTR_8364 and tr_L7N2R7_L7N2R7_XENTR_8364 are exactly identical!
WARNING: Sequences tr_A0A286ZIM4_A0A286ZIM4_PIG_9823 and tr_A0A287B2M5_A0A287B2M5_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A286ZTC9_A0A286ZTC9_PIG_9823 and tr_A0A287AP10_A0A287AP10_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A287A195_A0A287A195_PIG_9823 and tr_A0A287A6T3_A0A287A6T3_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A287B0L7_A0A287B0L7_PIG_9823 and tr_A0A287BAG6_A0A287BAG6_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A2I3M2H8_A0A2I3M2H8_PAPAN_9555 and tr_A0A2K5XS06_A0A2K5XS06_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3M953_A0A2I3M953_PAPAN_9555 and tr_A0A0D9R9Z5_A0A0D9R9Z5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A091D7S3_A0A091D7S3_FUKDA_885580 and tr_A0A091DV01_A0A091DV01_FUKDA_885580 are exactly identical!
WARNING: Duplicate sequences found: 48

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.reduced.phy

Alignment comprises 1 partitions and 88 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 88 / 88
Gaps: 0.51 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 88 / 7040
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -85504.662729] Initial branch length optimization
[00:00:01 -74327.701708] Model parameter optimization (eps = 10.000000)
[00:00:23 -73358.634450] AUTODETECT spr round 1 (radius: 5)
[00:02:06 -63265.565416] AUTODETECT spr round 2 (radius: 10)
[00:04:06 -52313.801932] AUTODETECT spr round 3 (radius: 15)
[00:06:30 -44860.415219] AUTODETECT spr round 4 (radius: 20)
[00:09:37 -40445.032446] AUTODETECT spr round 5 (radius: 25)
[00:12:39 -38529.551960] SPR radius for FAST iterations: 25 (autodetect)
[00:12:39 -38529.551960] Model parameter optimization (eps = 3.000000)
[00:12:57 -38413.529881] FAST spr round 1 (radius: 25)
[00:15:39 -33240.876388] FAST spr round 2 (radius: 25)
[00:17:41 -32832.017073] FAST spr round 3 (radius: 25)
[00:19:25 -32791.991136] FAST spr round 4 (radius: 25)
[00:21:00 -32772.202806] FAST spr round 5 (radius: 25)
[00:22:29 -32772.202717] Model parameter optimization (eps = 1.000000)
[00:22:44 -32760.031219] SLOW spr round 1 (radius: 5)
[00:24:38 -32752.254139] SLOW spr round 2 (radius: 5)
[00:26:25 -32752.254011] SLOW spr round 3 (radius: 10)
[00:28:10 -32742.536521] SLOW spr round 4 (radius: 5)
[00:30:12 -32742.415077] SLOW spr round 5 (radius: 5)
[00:32:04 -32742.415077] SLOW spr round 6 (radius: 10)
[00:33:50 -32741.486647] SLOW spr round 7 (radius: 5)
[00:35:52 -32739.945395] SLOW spr round 8 (radius: 5)
[00:37:44 -32739.503533] SLOW spr round 9 (radius: 5)
[00:39:31 -32739.503424] SLOW spr round 10 (radius: 10)
[00:41:14 -32739.153459] SLOW spr round 11 (radius: 5)
[00:43:15 -32738.373788] SLOW spr round 12 (radius: 5)
[00:45:07 -32738.373788] SLOW spr round 13 (radius: 10)
[00:46:52 -32737.610612] SLOW spr round 14 (radius: 5)
[00:48:52 -32737.610608] SLOW spr round 15 (radius: 10)
[00:50:44 -32736.659631] SLOW spr round 16 (radius: 5)
[00:52:43 -32736.659631] SLOW spr round 17 (radius: 10)
[00:54:33 -32736.659631] SLOW spr round 18 (radius: 15)
[00:57:15 -32736.500631] SLOW spr round 19 (radius: 5)
[00:59:20 -32736.500631] SLOW spr round 20 (radius: 10)
[01:01:16 -32736.500631] SLOW spr round 21 (radius: 15)
[01:03:54 -32736.413210] SLOW spr round 22 (radius: 20)
[01:07:47 -32735.819951] SLOW spr round 23 (radius: 5)
[01:09:55 -32735.418689] SLOW spr round 24 (radius: 5)
[01:11:50 -32734.541481] SLOW spr round 25 (radius: 5)
[01:13:39 -32734.541442] SLOW spr round 26 (radius: 10)
[01:15:22 -32734.431591] SLOW spr round 27 (radius: 5)
[01:17:24 -32734.431580] SLOW spr round 28 (radius: 10)
[01:19:16 -32734.431580] SLOW spr round 29 (radius: 15)
[01:21:55 -32734.431580] SLOW spr round 30 (radius: 20)
[01:25:45 -32734.382284] SLOW spr round 31 (radius: 25)
[01:30:50 -32734.371699] Model parameter optimization (eps = 0.100000)

[01:30:55] [worker #0] ML tree search #1, logLikelihood: -32734.320713

[01:30:55 -85979.844718] Initial branch length optimization
[01:30:56 -74630.087580] Model parameter optimization (eps = 10.000000)
[01:31:17 -73634.515461] AUTODETECT spr round 1 (radius: 5)
[01:33:00 -62615.303011] AUTODETECT spr round 2 (radius: 10)
[01:34:56 -51473.327644] AUTODETECT spr round 3 (radius: 15)
[01:37:13 -43037.866671] AUTODETECT spr round 4 (radius: 20)
[01:40:00 -39556.560505] AUTODETECT spr round 5 (radius: 25)
[01:43:26 -38440.041956] SPR radius for FAST iterations: 25 (autodetect)
[01:43:26 -38440.041956] Model parameter optimization (eps = 3.000000)
[01:43:42 -38282.101534] FAST spr round 1 (radius: 25)
[01:46:26 -33237.220489] FAST spr round 2 (radius: 25)
[01:48:28 -32566.456646] FAST spr round 3 (radius: 25)
[01:50:12 -32499.897235] FAST spr round 4 (radius: 25)
[01:51:46 -32490.399471] FAST spr round 5 (radius: 25)
[01:53:14 -32489.718001] FAST spr round 6 (radius: 25)
[01:54:40 -32487.031970] FAST spr round 7 (radius: 25)
[01:56:04 -32487.031859] Model parameter optimization (eps = 1.000000)
[01:56:10 -32486.588633] SLOW spr round 1 (radius: 5)
[01:58:00 -32466.588453] SLOW spr round 2 (radius: 5)
[01:59:47 -32461.322260] SLOW spr round 3 (radius: 5)
[02:01:28 -32461.322260] SLOW spr round 4 (radius: 10)
[02:03:13 -32457.018737] SLOW spr round 5 (radius: 5)
[02:05:23 -32453.795544] SLOW spr round 6 (radius: 5)
[02:07:21 -32449.808263] SLOW spr round 7 (radius: 5)
[02:09:08 -32449.808218] SLOW spr round 8 (radius: 10)
[02:10:53 -32448.910826] SLOW spr round 9 (radius: 5)
[02:12:57 -32448.297368] SLOW spr round 10 (radius: 5)
[02:14:50 -32448.297361] SLOW spr round 11 (radius: 10)
[02:15:39] [worker #1] ML tree search #2, logLikelihood: -32491.871493
[02:16:37 -32447.993774] SLOW spr round 12 (radius: 5)
[02:18:43 -32446.524524] SLOW spr round 13 (radius: 5)
[02:20:33 -32446.524515] SLOW spr round 14 (radius: 10)
[02:22:19 -32446.431768] SLOW spr round 15 (radius: 15)
[02:25:28 -32445.344088] SLOW spr round 16 (radius: 5)
[02:27:38 -32439.354293] SLOW spr round 17 (radius: 5)
[02:29:32 -32439.351586] SLOW spr round 18 (radius: 10)
[02:31:18 -32439.323806] SLOW spr round 19 (radius: 15)
[02:34:24 -32439.323805] SLOW spr round 20 (radius: 20)
[02:39:12 -32439.323805] SLOW spr round 21 (radius: 25)
[02:45:04 -32438.670036] SLOW spr round 22 (radius: 5)
[02:47:17 -32432.477826] SLOW spr round 23 (radius: 5)
[02:49:13 -32432.477786] SLOW spr round 24 (radius: 10)
[02:51:01 -32432.477786] SLOW spr round 25 (radius: 15)
[02:54:03 -32432.477786] SLOW spr round 26 (radius: 20)
[02:58:49 -32432.477786] SLOW spr round 27 (radius: 25)
[03:04:40 -32430.563949] SLOW spr round 28 (radius: 5)
[03:06:52 -32428.166563] SLOW spr round 29 (radius: 5)
[03:08:48 -32428.166563] SLOW spr round 30 (radius: 10)
[03:10:35 -32428.166563] SLOW spr round 31 (radius: 15)
[03:13:39 -32428.166563] SLOW spr round 32 (radius: 20)
[03:18:25 -32427.423852] SLOW spr round 33 (radius: 5)
[03:20:34 -32427.423847] SLOW spr round 34 (radius: 10)
[03:22:37 -32427.423847] SLOW spr round 35 (radius: 15)
[03:25:30 -32427.423847] SLOW spr round 36 (radius: 20)
[03:30:23 -32427.423847] SLOW spr round 37 (radius: 25)
[03:36:14 -32427.423847] Model parameter optimization (eps = 0.100000)

[03:36:19] [worker #0] ML tree search #3, logLikelihood: -32427.414964

[03:36:19 -85834.367879] Initial branch length optimization
[03:36:20 -74454.022122] Model parameter optimization (eps = 10.000000)
[03:36:45 -73450.221882] AUTODETECT spr round 1 (radius: 5)
[03:38:29 -62105.723554] AUTODETECT spr round 2 (radius: 10)
[03:40:26 -51296.148318] AUTODETECT spr round 3 (radius: 15)
[03:42:38 -44962.578435] AUTODETECT spr round 4 (radius: 20)
[03:45:13 -41837.898791] AUTODETECT spr round 5 (radius: 25)
[03:47:54 -40074.004957] SPR radius for FAST iterations: 25 (autodetect)
[03:47:54 -40074.004957] Model parameter optimization (eps = 3.000000)
[03:48:11 -39942.407205] FAST spr round 1 (radius: 25)
[03:50:57 -33965.200654] FAST spr round 2 (radius: 25)
[03:53:01 -32919.396723] FAST spr round 3 (radius: 25)
[03:54:47 -32692.003580] FAST spr round 4 (radius: 25)
[03:56:28 -32614.816533] FAST spr round 5 (radius: 25)
[03:58:02 -32571.529640] FAST spr round 6 (radius: 25)
[03:59:30 -32571.524635] Model parameter optimization (eps = 1.000000)
[03:59:45 -32568.583108] SLOW spr round 1 (radius: 5)
[04:01:39 -32562.191857] SLOW spr round 2 (radius: 5)
[04:03:29 -32562.190065] SLOW spr round 3 (radius: 10)
[04:05:15 -32561.441886] SLOW spr round 4 (radius: 5)
[04:07:22 -32557.954819] SLOW spr round 5 (radius: 5)
[04:09:17 -32557.954725] SLOW spr round 6 (radius: 10)
[04:11:03 -32556.862424] SLOW spr round 7 (radius: 5)
[04:13:08 -32556.862416] SLOW spr round 8 (radius: 10)
[04:15:02 -32556.862416] SLOW spr round 9 (radius: 15)
[04:17:54 -32552.729463] SLOW spr round 10 (radius: 5)
[04:20:08 -32548.769372] SLOW spr round 11 (radius: 5)
[04:22:04 -32548.769368] SLOW spr round 12 (radius: 10)
[04:23:54 -32548.769368] SLOW spr round 13 (radius: 15)
[04:26:59 -32548.176182] SLOW spr round 14 (radius: 5)
[04:27:02] [worker #1] ML tree search #4, logLikelihood: -32446.665970
[04:29:07 -32545.951259] SLOW spr round 15 (radius: 5)
[04:31:02 -32545.951258] SLOW spr round 16 (radius: 10)
[04:32:53 -32545.951258] SLOW spr round 17 (radius: 15)
[04:35:58 -32545.627005] SLOW spr round 18 (radius: 5)
[04:38:05 -32545.620877] SLOW spr round 19 (radius: 10)
[04:40:02 -32544.826115] SLOW spr round 20 (radius: 5)
[04:42:07 -32544.426023] SLOW spr round 21 (radius: 5)
[04:44:01 -32544.426023] SLOW spr round 22 (radius: 10)
[04:45:46 -32542.636114] SLOW spr round 23 (radius: 5)
[04:47:51 -32542.636110] SLOW spr round 24 (radius: 10)
[04:49:46 -32542.636110] SLOW spr round 25 (radius: 15)
[04:52:42 -32542.541359] SLOW spr round 26 (radius: 20)
[04:56:57 -32542.541242] SLOW spr round 27 (radius: 25)
[05:02:12 -32540.542439] SLOW spr round 28 (radius: 5)
[05:04:28 -32536.014576] SLOW spr round 29 (radius: 5)
[05:06:26 -32536.014514] SLOW spr round 30 (radius: 10)
[05:08:15 -32536.014514] SLOW spr round 31 (radius: 15)
[05:11:24 -32534.186060] SLOW spr round 32 (radius: 5)
[05:13:33 -32533.772609] SLOW spr round 33 (radius: 5)
[05:15:30 -32533.552842] SLOW spr round 34 (radius: 5)
[05:17:20 -32533.552835] SLOW spr round 35 (radius: 10)
[05:19:05 -32533.552835] SLOW spr round 36 (radius: 15)
[05:22:24 -32533.552835] SLOW spr round 37 (radius: 20)
[05:26:40 -32533.552835] SLOW spr round 38 (radius: 25)
[05:31:49 -32533.552835] Model parameter optimization (eps = 0.100000)

[05:32:00] [worker #0] ML tree search #5, logLikelihood: -32533.409748

[05:32:00 -86052.902989] Initial branch length optimization
[05:32:01 -74654.349093] Model parameter optimization (eps = 10.000000)
[05:32:23 -73632.750841] AUTODETECT spr round 1 (radius: 5)
[05:34:08 -63132.356117] AUTODETECT spr round 2 (radius: 10)
[05:36:08 -52054.800580] AUTODETECT spr round 3 (radius: 15)
[05:38:30 -43630.610846] AUTODETECT spr round 4 (radius: 20)
[05:41:15 -39671.273158] AUTODETECT spr round 5 (radius: 25)
[05:44:31 -38119.650551] SPR radius for FAST iterations: 25 (autodetect)
[05:44:31 -38119.650551] Model parameter optimization (eps = 3.000000)
[05:44:47 -37956.908540] FAST spr round 1 (radius: 25)
[05:47:24 -32952.164386] FAST spr round 2 (radius: 25)
[05:49:19 -32627.386625] FAST spr round 3 (radius: 25)
[05:50:59 -32605.793139] FAST spr round 4 (radius: 25)
[05:52:38 -32579.307584] FAST spr round 5 (radius: 25)
[05:54:09 -32571.260168] FAST spr round 6 (radius: 25)
[05:55:37 -32569.262532] FAST spr round 7 (radius: 25)
[05:57:04 -32569.262530] Model parameter optimization (eps = 1.000000)
[05:57:10 -32569.135483] SLOW spr round 1 (radius: 5)
[05:59:06 -32561.865976] SLOW spr round 2 (radius: 5)
[06:00:54 -32561.562715] SLOW spr round 3 (radius: 5)
[06:02:40 -32561.562689] SLOW spr round 4 (radius: 10)
[06:04:26 -32560.518645] SLOW spr round 5 (radius: 5)
[06:06:31 -32560.518645] SLOW spr round 6 (radius: 10)
[06:08:27 -32559.724962] SLOW spr round 7 (radius: 5)
[06:10:33 -32553.608095] SLOW spr round 8 (radius: 5)
[06:12:28 -32553.074643] SLOW spr round 9 (radius: 5)
[06:14:16 -32553.074621] SLOW spr round 10 (radius: 10)
[06:16:03 -32549.881671] SLOW spr round 11 (radius: 5)
[06:18:12 -32545.880507] SLOW spr round 12 (radius: 5)
[06:20:07 -32545.880462] SLOW spr round 13 (radius: 10)
[06:21:54 -32544.237300] SLOW spr round 14 (radius: 5)
[06:24:02 -32542.683905] SLOW spr round 15 (radius: 5)
[06:25:56 -32542.683849] SLOW spr round 16 (radius: 10)
[06:27:43 -32542.367880] SLOW spr round 17 (radius: 5)
[06:29:47 -32542.367879] SLOW spr round 18 (radius: 10)
[06:31:40 -32542.367879] SLOW spr round 19 (radius: 15)
[06:34:26 -32538.803223] SLOW spr round 20 (radius: 5)
[06:36:35 -32537.465312] SLOW spr round 21 (radius: 5)
[06:38:31 -32537.465301] SLOW spr round 22 (radius: 10)
[06:40:20 -32536.728265] SLOW spr round 23 (radius: 5)
[06:42:25 -32536.138323] SLOW spr round 24 (radius: 5)
[06:44:20 -32536.138316] SLOW spr round 25 (radius: 10)
[06:46:08 -32535.794989] SLOW spr round 26 (radius: 5)
[06:48:16 -32533.169247] SLOW spr round 27 (radius: 5)
[06:50:13 -32533.169101] SLOW spr round 28 (radius: 10)
[06:52:01 -32533.169091] SLOW spr round 29 (radius: 15)
[06:54:55 -32532.986410] SLOW spr round 30 (radius: 5)
[06:57:07 -32531.396455] SLOW spr round 31 (radius: 5)
[06:59:06 -32531.394412] SLOW spr round 32 (radius: 10)
[07:00:55 -32531.394412] SLOW spr round 33 (radius: 15)
[07:03:48 -32530.163272] SLOW spr round 34 (radius: 5)
[07:05:58 -32530.163267] SLOW spr round 35 (radius: 10)
[07:07:56 -32530.163267] SLOW spr round 36 (radius: 15)
[07:10:44 -32530.163267] SLOW spr round 37 (radius: 20)
[07:11:11] [worker #1] ML tree search #6, logLikelihood: -32429.201897
[07:14:44 -32529.719275] SLOW spr round 38 (radius: 5)
[07:16:56 -32529.718436] SLOW spr round 39 (radius: 10)
[07:18:59 -32529.718427] SLOW spr round 40 (radius: 15)
[07:21:47 -32529.718427] SLOW spr round 41 (radius: 20)
[07:25:49 -32529.556020] SLOW spr round 42 (radius: 5)
[07:28:04 -32528.989088] SLOW spr round 43 (radius: 5)
[07:30:04 -32528.989086] SLOW spr round 44 (radius: 10)
[07:31:54 -32528.989086] SLOW spr round 45 (radius: 15)
[07:34:50 -32528.861433] SLOW spr round 46 (radius: 5)
[07:37:01 -32528.861406] SLOW spr round 47 (radius: 10)
[07:38:59 -32528.861406] SLOW spr round 48 (radius: 15)
[07:41:47 -32528.861406] SLOW spr round 49 (radius: 20)
[07:45:44 -32528.861406] SLOW spr round 50 (radius: 25)
[07:50:24 -32526.608116] SLOW spr round 51 (radius: 5)
[07:52:43 -32519.207676] SLOW spr round 52 (radius: 5)
[07:54:45 -32519.179529] SLOW spr round 53 (radius: 10)
[07:56:39 -32504.759031] SLOW spr round 54 (radius: 5)
[07:58:50 -32500.014504] SLOW spr round 55 (radius: 5)
[08:00:46 -32500.014459] SLOW spr round 56 (radius: 10)
[08:02:37 -32465.514712] SLOW spr round 57 (radius: 5)
[08:04:45 -32464.769422] SLOW spr round 58 (radius: 5)
[08:06:39 -32464.769422] SLOW spr round 59 (radius: 10)
[08:08:27 -32462.687111] SLOW spr round 60 (radius: 5)
[08:10:34 -32462.687057] SLOW spr round 61 (radius: 10)
[08:12:27 -32462.687057] SLOW spr round 62 (radius: 15)
[08:15:16 -32462.687057] SLOW spr round 63 (radius: 20)
[08:19:16 -32461.035769] SLOW spr round 64 (radius: 5)
[08:21:28 -32460.502978] SLOW spr round 65 (radius: 5)
[08:23:26 -32460.502923] SLOW spr round 66 (radius: 10)
[08:25:15 -32460.502923] SLOW spr round 67 (radius: 15)
[08:28:08 -32460.502923] SLOW spr round 68 (radius: 20)
[08:32:04 -32460.502923] SLOW spr round 69 (radius: 25)
[08:37:03 -32459.559160] SLOW spr round 70 (radius: 5)
[08:39:17 -32459.559082] SLOW spr round 71 (radius: 10)
[08:41:25 -32459.236619] SLOW spr round 72 (radius: 5)
[08:43:31 -32458.823091] SLOW spr round 73 (radius: 5)
[08:45:25 -32458.823091] SLOW spr round 74 (radius: 10)
[08:47:11 -32458.823091] SLOW spr round 75 (radius: 15)
[08:50:10 -32458.823091] SLOW spr round 76 (radius: 20)
[08:54:06 -32458.823091] SLOW spr round 77 (radius: 25)
[08:59:02 -32458.823091] Model parameter optimization (eps = 0.100000)

[08:59:08] [worker #0] ML tree search #7, logLikelihood: -32458.797800

[08:59:08 -86040.701137] Initial branch length optimization
[08:59:09 -74593.271740] Model parameter optimization (eps = 10.000000)
[08:59:32 -73608.580338] AUTODETECT spr round 1 (radius: 5)
[09:01:15 -63295.402821] AUTODETECT spr round 2 (radius: 10)
[09:03:16 -50453.614360] AUTODETECT spr round 3 (radius: 15)
[09:05:33 -43491.316324] AUTODETECT spr round 4 (radius: 20)
[09:08:33 -39634.201575] AUTODETECT spr round 5 (radius: 25)
[09:12:00 -38421.588531] SPR radius for FAST iterations: 25 (autodetect)
[09:12:00 -38421.588531] Model parameter optimization (eps = 3.000000)
[09:12:20 -38287.184672] FAST spr round 1 (radius: 25)
[09:14:58 -32843.230551] FAST spr round 2 (radius: 25)
[09:16:58 -32470.954778] FAST spr round 3 (radius: 25)
[09:18:42 -32446.187598] FAST spr round 4 (radius: 25)
[09:20:15 -32446.187425] Model parameter optimization (eps = 1.000000)
[09:20:25 -32441.115890] SLOW spr round 1 (radius: 5)
[09:22:23 -32430.071383] SLOW spr round 2 (radius: 5)
[09:24:15 -32427.029923] SLOW spr round 3 (radius: 5)
[09:26:02 -32427.029789] SLOW spr round 4 (radius: 10)
[09:27:47 -32424.921072] SLOW spr round 5 (radius: 5)
[09:29:51 -32424.920967] SLOW spr round 6 (radius: 10)
[09:31:45 -32424.920966] SLOW spr round 7 (radius: 15)
[09:34:33 -32424.920966] SLOW spr round 8 (radius: 20)
[09:38:19 -32422.967081] SLOW spr round 9 (radius: 5)
[09:40:28 -32421.204662] SLOW spr round 10 (radius: 5)
[09:42:23 -32421.204641] SLOW spr round 11 (radius: 10)
[09:44:10 -32421.204641] SLOW spr round 12 (radius: 15)
[09:47:07 -32421.204641] SLOW spr round 13 (radius: 20)
[09:50:52 -32421.154353] SLOW spr round 14 (radius: 25)
[09:52:07] [worker #1] ML tree search #8, logLikelihood: -32495.689876
[09:55:04 -32420.232439] SLOW spr round 15 (radius: 5)
[09:57:13 -32420.232439] SLOW spr round 16 (radius: 10)
[09:59:18 -32420.232439] SLOW spr round 17 (radius: 15)
[10:02:01 -32420.232439] SLOW spr round 18 (radius: 20)
[10:05:50 -32420.161469] SLOW spr round 19 (radius: 25)
[10:10:00 -32420.161469] Model parameter optimization (eps = 0.100000)

[10:10:06] [worker #0] ML tree search #9, logLikelihood: -32420.109795

[10:10:06 -86122.021685] Initial branch length optimization
[10:10:07 -74646.794494] Model parameter optimization (eps = 10.000000)
[10:10:38 -73659.139588] AUTODETECT spr round 1 (radius: 5)
[10:12:23 -63587.391428] AUTODETECT spr round 2 (radius: 10)
[10:14:24 -51871.792879] AUTODETECT spr round 3 (radius: 15)
[10:16:47 -42965.103375] AUTODETECT spr round 4 (radius: 20)
[10:19:37 -39798.687246] AUTODETECT spr round 5 (radius: 25)
[10:22:33 -38284.146571] SPR radius for FAST iterations: 25 (autodetect)
[10:22:33 -38284.146571] Model parameter optimization (eps = 3.000000)
[10:23:02 -38124.880086] FAST spr round 1 (radius: 25)
[10:25:44 -33275.566415] FAST spr round 2 (radius: 25)
[10:27:43 -32871.454424] FAST spr round 3 (radius: 25)
[10:29:27 -32801.183088] FAST spr round 4 (radius: 25)
[10:31:02 -32795.948352] FAST spr round 5 (radius: 25)
[10:32:34 -32789.055936] FAST spr round 6 (radius: 25)
[10:34:02 -32788.819632] FAST spr round 7 (radius: 25)
[10:35:28 -32788.817756] Model parameter optimization (eps = 1.000000)
[10:35:36 -32788.287001] SLOW spr round 1 (radius: 5)
[10:37:30 -32778.626377] SLOW spr round 2 (radius: 5)
[10:39:21 -32771.913016] SLOW spr round 3 (radius: 5)
[10:41:08 -32770.420162] SLOW spr round 4 (radius: 5)
[10:42:51 -32770.420147] SLOW spr round 5 (radius: 10)
[10:44:35 -32768.944500] SLOW spr round 6 (radius: 5)
[10:46:39 -32768.944500] SLOW spr round 7 (radius: 10)
[10:48:34 -32768.148763] SLOW spr round 8 (radius: 5)
[10:50:35 -32768.143746] SLOW spr round 9 (radius: 10)
[10:52:28 -32768.029727] SLOW spr round 10 (radius: 5)
[10:54:30 -32768.029635] SLOW spr round 11 (radius: 10)
[10:56:21 -32768.029634] SLOW spr round 12 (radius: 15)
[10:59:07 -32763.735157] SLOW spr round 13 (radius: 5)
[11:01:18 -32761.508317] SLOW spr round 14 (radius: 5)
[11:03:15 -32760.422956] SLOW spr round 15 (radius: 5)
[11:05:02 -32760.422860] SLOW spr round 16 (radius: 10)
[11:06:47 -32758.174199] SLOW spr round 17 (radius: 5)
[11:08:51 -32758.174194] SLOW spr round 18 (radius: 10)
[11:10:45 -32754.107101] SLOW spr round 19 (radius: 5)
[11:12:48 -32753.552568] SLOW spr round 20 (radius: 5)
[11:14:41 -32753.552415] SLOW spr round 21 (radius: 10)
[11:16:27 -32751.992885] SLOW spr round 22 (radius: 5)
[11:18:30 -32751.992863] SLOW spr round 23 (radius: 10)
[11:20:25 -32751.049017] SLOW spr round 24 (radius: 5)
[11:22:28 -32751.048938] SLOW spr round 25 (radius: 10)
[11:24:20 -32751.040288] SLOW spr round 26 (radius: 15)
[11:27:08 -32751.040164] SLOW spr round 27 (radius: 20)
[11:30:49 -32749.003658] SLOW spr round 28 (radius: 5)
[11:32:59 -32746.186014] SLOW spr round 29 (radius: 5)
[11:34:58 -32746.010380] SLOW spr round 30 (radius: 5)
[11:36:48 -32746.010266] SLOW spr round 31 (radius: 10)
[11:38:33 -32746.010238] SLOW spr round 32 (radius: 15)
[11:39:53] [worker #1] ML tree search #10, logLikelihood: -32518.427291
[11:41:31 -32746.010228] SLOW spr round 33 (radius: 20)
[11:45:07 -32742.703147] SLOW spr round 34 (radius: 5)
[11:47:17 -32741.355431] SLOW spr round 35 (radius: 5)
[11:49:12 -32741.355424] SLOW spr round 36 (radius: 10)
[11:51:00 -32740.327534] SLOW spr round 37 (radius: 5)
[11:53:03 -32740.326961] SLOW spr round 38 (radius: 10)
[11:54:58 -32740.326957] SLOW spr round 39 (radius: 15)
[11:57:44 -32737.966392] SLOW spr round 40 (radius: 5)
[11:59:51 -32737.627590] SLOW spr round 41 (radius: 5)
[12:01:45 -32737.627494] SLOW spr round 42 (radius: 10)
[12:03:33 -32737.627451] SLOW spr round 43 (radius: 15)
[12:06:27 -32737.627419] SLOW spr round 44 (radius: 20)
[12:10:08 -32737.627395] SLOW spr round 45 (radius: 25)
[12:14:30 -32735.655183] SLOW spr round 46 (radius: 5)
[12:16:41 -32735.655048] SLOW spr round 47 (radius: 10)
[12:18:49 -32731.953093] SLOW spr round 48 (radius: 5)
[12:20:52 -32731.952992] SLOW spr round 49 (radius: 10)
[12:22:45 -32731.952987] SLOW spr round 50 (radius: 15)
[12:25:31 -32731.952984] SLOW spr round 51 (radius: 20)
[12:29:15 -32724.625708] SLOW spr round 52 (radius: 5)
[12:31:24 -32724.382534] SLOW spr round 53 (radius: 5)
[12:33:20 -32724.131588] SLOW spr round 54 (radius: 5)
[12:35:09 -32724.131530] SLOW spr round 55 (radius: 10)
[12:36:54 -32724.131530] SLOW spr round 56 (radius: 15)
[12:39:52 -32724.131529] SLOW spr round 57 (radius: 20)
[12:43:30 -32724.131529] SLOW spr round 58 (radius: 25)
[12:47:53 -32721.488331] SLOW spr round 59 (radius: 5)
[12:50:06 -32708.813989] SLOW spr round 60 (radius: 5)
[12:52:06 -32691.161963] SLOW spr round 61 (radius: 5)
[12:53:55 -32690.797128] SLOW spr round 62 (radius: 5)
[12:55:41 -32690.797128] SLOW spr round 63 (radius: 10)
[12:57:26 -32678.304764] SLOW spr round 64 (radius: 5)
[12:59:32 -32665.881196] SLOW spr round 65 (radius: 5)
[13:01:26 -32665.695492] SLOW spr round 66 (radius: 5)
[13:03:14 -32665.695486] SLOW spr round 67 (radius: 10)
[13:04:59 -32660.834020] SLOW spr round 68 (radius: 5)
[13:07:05 -32658.660710] SLOW spr round 69 (radius: 5)
[13:08:58 -32658.660708] SLOW spr round 70 (radius: 10)
[13:10:45 -32658.660708] SLOW spr round 71 (radius: 15)
[13:13:45 -32614.899051] SLOW spr round 72 (radius: 5)
[13:15:56 -32556.339457] SLOW spr round 73 (radius: 5)
[13:17:53 -32556.339102] SLOW spr round 74 (radius: 10)
[13:19:42 -32556.339088] SLOW spr round 75 (radius: 15)
[13:22:42 -32555.724431] SLOW spr round 76 (radius: 5)
[13:24:49 -32555.256261] SLOW spr round 77 (radius: 5)
[13:26:43 -32555.256255] SLOW spr round 78 (radius: 10)
[13:28:30 -32555.256255] SLOW spr round 79 (radius: 15)
[13:31:27 -32555.256255] SLOW spr round 80 (radius: 20)
[13:35:07 -32555.256255] SLOW spr round 81 (radius: 25)
[13:39:37 -32554.293874] SLOW spr round 82 (radius: 5)
[13:41:49 -32553.308569] SLOW spr round 83 (radius: 5)
[13:43:46 -32553.308524] SLOW spr round 84 (radius: 10)
[13:45:36 -32552.515336] SLOW spr round 85 (radius: 5)
[13:47:41 -32552.133650] SLOW spr round 86 (radius: 5)
[13:49:33 -32552.133588] SLOW spr round 87 (radius: 10)
[13:51:19 -32552.056266] SLOW spr round 88 (radius: 15)
[13:54:14 -32551.881395] SLOW spr round 89 (radius: 5)
[13:56:20 -32551.880158] SLOW spr round 90 (radius: 10)
[13:58:17 -32551.852170] SLOW spr round 91 (radius: 15)
[14:01:00 -32551.852170] SLOW spr round 92 (radius: 20)
[14:04:48 -32551.852170] SLOW spr round 93 (radius: 25)
[14:09:21 -32551.852170] Model parameter optimization (eps = 0.100000)

[14:09:36] [worker #0] ML tree search #11, logLikelihood: -32551.407293

[14:09:36 -86592.930754] Initial branch length optimization
[14:09:38 -74732.437576] Model parameter optimization (eps = 10.000000)
[14:09:58 -73722.780707] AUTODETECT spr round 1 (radius: 5)
[14:10:33] [worker #1] ML tree search #12, logLikelihood: -32383.893755
[14:11:44 -62765.482363] AUTODETECT spr round 2 (radius: 10)
[14:13:43 -50916.219480] AUTODETECT spr round 3 (radius: 15)
[14:16:03 -43622.573335] AUTODETECT spr round 4 (radius: 20)
[14:18:47 -41486.809241] AUTODETECT spr round 5 (radius: 25)
[14:21:47 -40106.799733] SPR radius for FAST iterations: 25 (autodetect)
[14:21:47 -40106.799733] Model parameter optimization (eps = 3.000000)
[14:22:11 -39957.741423] FAST spr round 1 (radius: 25)
[14:24:54 -34314.753186] FAST spr round 2 (radius: 25)
[14:26:49 -33850.956621] FAST spr round 3 (radius: 25)
[14:28:32 -33436.469468] FAST spr round 4 (radius: 25)
[14:30:10 -32779.433527] FAST spr round 5 (radius: 25)
[14:31:44 -32689.181926] FAST spr round 6 (radius: 25)
[14:33:12 -32678.000683] FAST spr round 7 (radius: 25)
[14:34:38 -32672.115438] FAST spr round 8 (radius: 25)
[14:36:02 -32672.115366] Model parameter optimization (eps = 1.000000)
[14:36:18 -32662.401395] SLOW spr round 1 (radius: 5)
[14:38:10 -32648.146464] SLOW spr round 2 (radius: 5)
[14:39:56 -32647.990027] SLOW spr round 3 (radius: 5)
[14:41:41 -32647.288137] SLOW spr round 4 (radius: 5)
[14:43:23 -32647.286869] SLOW spr round 5 (radius: 10)
[14:45:08 -32645.607822] SLOW spr round 6 (radius: 5)
[14:47:13 -32645.607821] SLOW spr round 7 (radius: 10)
[14:49:09 -32644.383423] SLOW spr round 8 (radius: 5)
[14:51:12 -32644.383423] SLOW spr round 9 (radius: 10)
[14:53:05 -32644.019243] SLOW spr round 10 (radius: 5)
[14:55:07 -32644.019243] SLOW spr round 11 (radius: 10)
[14:57:00 -32643.750155] SLOW spr round 12 (radius: 5)
[14:59:02 -32643.750140] SLOW spr round 13 (radius: 10)
[15:00:55 -32643.547560] SLOW spr round 14 (radius: 5)
[15:03:01 -32642.267795] SLOW spr round 15 (radius: 5)
[15:04:53 -32642.267795] SLOW spr round 16 (radius: 10)
[15:06:40 -32641.921245] SLOW spr round 17 (radius: 5)
[15:08:44 -32641.418876] SLOW spr round 18 (radius: 5)
[15:10:36 -32641.418876] SLOW spr round 19 (radius: 10)
[15:12:23 -32641.418876] SLOW spr round 20 (radius: 15)
[15:15:20 -32625.638133] SLOW spr round 21 (radius: 5)
[15:17:28 -32621.062693] SLOW spr round 22 (radius: 5)
[15:19:22 -32619.073509] SLOW spr round 23 (radius: 5)
[15:21:08 -32619.073478] SLOW spr round 24 (radius: 10)
[15:22:53 -32618.502028] SLOW spr round 25 (radius: 5)
[15:24:56 -32618.501616] SLOW spr round 26 (radius: 10)
[15:26:49 -32618.501593] SLOW spr round 27 (radius: 15)
[15:29:29 -32618.501591] SLOW spr round 28 (radius: 20)
[15:33:27 -32615.508602] SLOW spr round 29 (radius: 5)
[15:35:35 -32615.501167] SLOW spr round 30 (radius: 10)
[15:37:35 -32615.501166] SLOW spr round 31 (radius: 15)
[15:40:11 -32614.976507] SLOW spr round 32 (radius: 5)
[15:42:18 -32614.697231] SLOW spr round 33 (radius: 5)
[15:44:11 -32614.697166] SLOW spr round 34 (radius: 10)
[15:45:58 -32614.697166] SLOW spr round 35 (radius: 15)
[15:48:46 -32614.697166] SLOW spr round 36 (radius: 20)
[15:52:39 -32614.697166] SLOW spr round 37 (radius: 25)
[15:57:39 -32614.697166] Model parameter optimization (eps = 0.100000)

[15:57:45] [worker #0] ML tree search #13, logLikelihood: -32614.684186

[15:57:45 -86198.751839] Initial branch length optimization
[15:57:46 -74677.033410] Model parameter optimization (eps = 10.000000)
[15:58:08 -73679.199067] AUTODETECT spr round 1 (radius: 5)
[15:59:53 -63088.212058] AUTODETECT spr round 2 (radius: 10)
[16:01:52 -51792.463035] AUTODETECT spr round 3 (radius: 15)
[16:04:17 -43427.302278] AUTODETECT spr round 4 (radius: 20)
[16:07:14 -38650.809190] AUTODETECT spr round 5 (radius: 25)
[16:10:29 -37768.359518] SPR radius for FAST iterations: 25 (autodetect)
[16:10:29 -37768.359518] Model parameter optimization (eps = 3.000000)
[16:10:52 -37628.454291] FAST spr round 1 (radius: 25)
[16:13:36 -33009.228179] FAST spr round 2 (radius: 25)
[16:15:34 -32763.642389] FAST spr round 3 (radius: 25)
[16:17:21 -32670.556136] FAST spr round 4 (radius: 25)
[16:18:57 -32662.567138] FAST spr round 5 (radius: 25)
[16:20:26 -32662.567020] Model parameter optimization (eps = 1.000000)
[16:20:37 -32658.150689] SLOW spr round 1 (radius: 5)
[16:22:32 -32650.751008] SLOW spr round 2 (radius: 5)
[16:24:22 -32649.266467] SLOW spr round 3 (radius: 5)
[16:26:07 -32649.265324] SLOW spr round 4 (radius: 10)
[16:27:53 -32647.387208] SLOW spr round 5 (radius: 5)
[16:29:58 -32647.387191] SLOW spr round 6 (radius: 10)
[16:31:56 -32646.190926] SLOW spr round 7 (radius: 5)
[16:33:57 -32646.190909] SLOW spr round 8 (radius: 10)
[16:35:52 -32645.105596] SLOW spr round 9 (radius: 5)
[16:37:56 -32644.691457] SLOW spr round 10 (radius: 5)
[16:39:48 -32644.691451] SLOW spr round 11 (radius: 10)
[16:41:35 -32643.109690] SLOW spr round 12 (radius: 5)
[16:43:38 -32643.109690] SLOW spr round 13 (radius: 10)
[16:45:35 -32642.707335] SLOW spr round 14 (radius: 5)
[16:47:36 -32642.707186] SLOW spr round 15 (radius: 10)
[16:49:30 -32642.339814] SLOW spr round 16 (radius: 5)
[16:51:33 -32642.339813] SLOW spr round 17 (radius: 10)
[16:53:27 -32642.322456] SLOW spr round 18 (radius: 15)
[16:56:30 -32642.005048] SLOW spr round 19 (radius: 5)
[16:58:36 -32642.005048] SLOW spr round 20 (radius: 10)
[17:00:36 -32641.992274] SLOW spr round 21 (radius: 15)
[17:03:34 -32641.992274] SLOW spr round 22 (radius: 20)
[17:04:12] [worker #1] ML tree search #14, logLikelihood: -32434.724757
[17:08:12 -32633.670801] SLOW spr round 23 (radius: 5)
[17:10:21 -32633.667848] SLOW spr round 24 (radius: 10)
[17:12:26 -32633.667848] SLOW spr round 25 (radius: 15)
[17:15:24 -32633.667848] SLOW spr round 26 (radius: 20)
[17:20:02 -32633.667848] SLOW spr round 27 (radius: 25)
[17:25:08 -32632.048486] SLOW spr round 28 (radius: 5)
[17:27:19 -32632.048486] SLOW spr round 29 (radius: 10)
[17:29:29 -32632.048486] SLOW spr round 30 (radius: 15)
[17:32:26 -32632.048486] SLOW spr round 31 (radius: 20)
[17:37:06 -32632.048486] SLOW spr round 32 (radius: 25)
[17:42:11 -32632.048486] Model parameter optimization (eps = 0.100000)

[17:42:15] [worker #0] ML tree search #15, logLikelihood: -32632.044741

[17:42:16 -86011.679866] Initial branch length optimization
[17:42:16 -74619.923351] Model parameter optimization (eps = 10.000000)
[17:42:42 -73641.714603] AUTODETECT spr round 1 (radius: 5)
[17:44:27 -62649.082524] AUTODETECT spr round 2 (radius: 10)
[17:46:26 -51291.296671] AUTODETECT spr round 3 (radius: 15)
[17:48:43 -45098.394831] AUTODETECT spr round 4 (radius: 20)
[17:51:32 -40029.126049] AUTODETECT spr round 5 (radius: 25)
[17:54:44 -38630.084435] SPR radius for FAST iterations: 25 (autodetect)
[17:54:44 -38630.084435] Model parameter optimization (eps = 3.000000)
[17:55:03 -38503.453852] FAST spr round 1 (radius: 25)
[17:57:44 -33215.529673] FAST spr round 2 (radius: 25)
[17:59:41 -32843.213033] FAST spr round 3 (radius: 25)
[18:01:22 -32816.530204] FAST spr round 4 (radius: 25)
[18:02:54 -32813.836396] FAST spr round 5 (radius: 25)
[18:04:22 -32813.836196] Model parameter optimization (eps = 1.000000)
[18:04:35 -32804.937220] SLOW spr round 1 (radius: 5)
[18:06:29 -32796.652122] SLOW spr round 2 (radius: 5)
[18:08:16 -32795.314368] SLOW spr round 3 (radius: 5)
[18:10:00 -32795.314274] SLOW spr round 4 (radius: 10)
[18:11:45 -32793.522845] SLOW spr round 5 (radius: 5)
[18:13:48 -32791.203211] SLOW spr round 6 (radius: 5)
[18:15:39 -32791.203211] SLOW spr round 7 (radius: 10)
[18:17:27 -32791.041784] SLOW spr round 8 (radius: 5)
[18:19:31 -32788.365266] SLOW spr round 9 (radius: 5)
[18:21:25 -32786.966556] SLOW spr round 10 (radius: 5)
[18:23:12 -32786.966429] SLOW spr round 11 (radius: 10)
[18:24:55 -32786.966427] SLOW spr round 12 (radius: 15)
[18:27:49 -32784.912542] SLOW spr round 13 (radius: 5)
[18:29:56 -32783.189782] SLOW spr round 14 (radius: 5)
[18:31:50 -32783.189777] SLOW spr round 15 (radius: 10)
[18:33:37 -32783.189777] SLOW spr round 16 (radius: 15)
[18:36:19 -32781.921796] SLOW spr round 17 (radius: 5)
[18:38:24 -32781.921714] SLOW spr round 18 (radius: 10)
[18:40:21 -32781.921714] SLOW spr round 19 (radius: 15)
[18:42:55 -32781.740224] SLOW spr round 20 (radius: 5)
[18:45:01 -32781.739891] SLOW spr round 21 (radius: 10)
[18:46:59 -32778.655079] SLOW spr round 22 (radius: 5)
[18:49:05 -32735.850034] SLOW spr round 23 (radius: 5)
[18:50:59 -32687.369159] SLOW spr round 24 (radius: 5)
[18:52:47 -32682.194670] SLOW spr round 25 (radius: 5)
[18:54:30 -32682.194654] SLOW spr round 26 (radius: 10)
[18:56:11 -32682.194654] SLOW spr round 27 (radius: 15)
[18:59:00 -32673.162398] SLOW spr round 28 (radius: 5)
[18:59:45] [worker #1] ML tree search #16, logLikelihood: -32468.578017
[19:01:07 -32667.575896] SLOW spr round 29 (radius: 5)
[19:03:00 -32667.575896] SLOW spr round 30 (radius: 10)
[19:04:47 -32666.475197] SLOW spr round 31 (radius: 5)
[19:06:49 -32665.798841] SLOW spr round 32 (radius: 5)
[19:08:42 -32665.464535] SLOW spr round 33 (radius: 5)
[19:10:29 -32665.464525] SLOW spr round 34 (radius: 10)
[19:12:13 -32665.464525] SLOW spr round 35 (radius: 15)
[19:15:09 -32661.161213] SLOW spr round 36 (radius: 5)
[19:17:15 -32657.608709] SLOW spr round 37 (radius: 5)
[19:19:08 -32657.608709] SLOW spr round 38 (radius: 10)
[19:20:55 -32654.106358] SLOW spr round 39 (radius: 5)
[19:22:59 -32651.818441] SLOW spr round 40 (radius: 5)
[19:24:49 -32651.818441] SLOW spr round 41 (radius: 10)
[19:26:35 -32651.818441] SLOW spr round 42 (radius: 15)
[19:29:26 -32650.254682] SLOW spr round 43 (radius: 5)
[19:31:31 -32650.254682] SLOW spr round 44 (radius: 10)
[19:33:27 -32650.254682] SLOW spr round 45 (radius: 15)
[19:36:07 -32650.254682] SLOW spr round 46 (radius: 20)
[19:40:15 -32495.269937] SLOW spr round 47 (radius: 5)
[19:42:28 -32456.698289] SLOW spr round 48 (radius: 5)
[19:44:28 -32452.580778] SLOW spr round 49 (radius: 5)
[19:46:18 -32452.530706] SLOW spr round 50 (radius: 10)
[19:48:05 -32449.918011] SLOW spr round 51 (radius: 5)
[19:50:09 -32449.917955] SLOW spr round 52 (radius: 10)
[19:52:05 -32449.803651] SLOW spr round 53 (radius: 5)
[19:54:08 -32447.447326] SLOW spr round 54 (radius: 5)
[19:56:00 -32447.447010] SLOW spr round 55 (radius: 10)
[19:57:44 -32447.080930] SLOW spr round 56 (radius: 5)
[19:59:48 -32447.080916] SLOW spr round 57 (radius: 10)
[20:01:41 -32447.080916] SLOW spr round 58 (radius: 15)
[20:04:30 -32441.294761] SLOW spr round 59 (radius: 5)
[20:06:37 -32441.294617] SLOW spr round 60 (radius: 10)
[20:08:34 -32441.294617] SLOW spr round 61 (radius: 15)
[20:11:18 -32441.294617] SLOW spr round 62 (radius: 20)
[20:15:48 -32441.294617] SLOW spr round 63 (radius: 25)
[20:21:15 -32428.882431] SLOW spr round 64 (radius: 5)
[20:23:25 -32427.275805] SLOW spr round 65 (radius: 5)
[20:25:21 -32427.275799] SLOW spr round 66 (radius: 10)
[20:27:09 -32427.275799] SLOW spr round 67 (radius: 15)
[20:30:04 -32427.275799] SLOW spr round 68 (radius: 20)
[20:34:30 -32427.219852] SLOW spr round 69 (radius: 25)
[20:39:59 -32427.219852] Model parameter optimization (eps = 0.100000)

[20:40:03] [worker #0] ML tree search #17, logLikelihood: -32427.167376

[20:40:04 -86186.571808] Initial branch length optimization
[20:40:04 -74700.523002] Model parameter optimization (eps = 10.000000)
[20:40:30 -73721.076329] AUTODETECT spr round 1 (radius: 5)
[20:42:13 -63136.538005] AUTODETECT spr round 2 (radius: 10)
[20:44:11 -52127.660867] AUTODETECT spr round 3 (radius: 15)
[20:46:35 -43649.026267] AUTODETECT spr round 4 (radius: 20)
[20:47:07] [worker #1] ML tree search #18, logLikelihood: -32464.915395
[20:49:28 -39544.107938] AUTODETECT spr round 5 (radius: 25)
[20:52:45 -38306.848787] SPR radius for FAST iterations: 25 (autodetect)
[20:52:45 -38306.848787] Model parameter optimization (eps = 3.000000)
[20:53:02 -38148.233897] FAST spr round 1 (radius: 25)
[20:55:45 -33276.965716] FAST spr round 2 (radius: 25)
[20:57:45 -32923.548014] FAST spr round 3 (radius: 25)
[20:59:30 -32837.076478] FAST spr round 4 (radius: 25)
[21:01:08 -32775.003440] FAST spr round 5 (radius: 25)
[21:02:41 -32761.706127] FAST spr round 6 (radius: 25)
[21:04:08 -32761.706119] Model parameter optimization (eps = 1.000000)
[21:04:18 -32759.775398] SLOW spr round 1 (radius: 5)
[21:06:12 -32744.771865] SLOW spr round 2 (radius: 5)
[21:08:04 -32740.305669] SLOW spr round 3 (radius: 5)
[21:09:51 -32740.305615] SLOW spr round 4 (radius: 10)
[21:11:38 -32736.733022] SLOW spr round 5 (radius: 5)
[21:13:44 -32736.732757] SLOW spr round 6 (radius: 10)
[21:15:41 -32735.636542] SLOW spr round 7 (radius: 5)
[21:17:45 -32735.633523] SLOW spr round 8 (radius: 10)
[21:19:39 -32735.443729] SLOW spr round 9 (radius: 5)
[21:21:42 -32735.443724] SLOW spr round 10 (radius: 10)
[21:23:37 -32735.443724] SLOW spr round 11 (radius: 15)
[21:26:44 -32733.241168] SLOW spr round 12 (radius: 5)
[21:28:52 -32733.241168] SLOW spr round 13 (radius: 10)
[21:30:53 -32733.241168] SLOW spr round 14 (radius: 15)
[21:33:55 -32733.241168] SLOW spr round 15 (radius: 20)
[21:38:47 -32732.444681] SLOW spr round 16 (radius: 5)
[21:40:57 -32732.444541] SLOW spr round 17 (radius: 10)
[21:43:02 -32732.444518] SLOW spr round 18 (radius: 15)
[21:46:00 -32732.444515] SLOW spr round 19 (radius: 20)
[21:50:48 -32732.012869] SLOW spr round 20 (radius: 5)
[21:52:59 -32732.009794] SLOW spr round 21 (radius: 10)
[21:55:06 -32732.009408] SLOW spr round 22 (radius: 15)
[21:58:05 -32732.009350] SLOW spr round 23 (radius: 20)
[22:03:00 -32731.635391] SLOW spr round 24 (radius: 5)
[22:05:09 -32731.559056] SLOW spr round 25 (radius: 10)
[22:07:14 -32731.424704] SLOW spr round 26 (radius: 5)
[22:09:16 -32731.424690] SLOW spr round 27 (radius: 10)
[22:11:09 -32731.424690] SLOW spr round 28 (radius: 15)
[22:14:13 -32731.424690] SLOW spr round 29 (radius: 20)
[22:19:03 -32731.424690] SLOW spr round 30 (radius: 25)
[22:24:43 -32727.448855] SLOW spr round 31 (radius: 5)
[22:26:57 -32716.157911] SLOW spr round 32 (radius: 5)
[22:29:00 -32698.452293] SLOW spr round 33 (radius: 5)
[22:30:49 -32695.956445] SLOW spr round 34 (radius: 5)
[22:32:34 -32695.956444] SLOW spr round 35 (radius: 10)
[22:34:19 -32695.956444] SLOW spr round 36 (radius: 15)
[22:37:41 -32695.956444] SLOW spr round 37 (radius: 20)
[22:39:27] [worker #1] ML tree search #20, logLikelihood: -32422.660677
[22:42:19 -32691.896145] SLOW spr round 38 (radius: 5)
[22:44:27 -32691.896145] SLOW spr round 39 (radius: 10)
[22:46:32 -32691.896145] SLOW spr round 40 (radius: 15)
[22:49:27 -32691.896145] SLOW spr round 41 (radius: 20)
[22:54:16 -32691.896145] SLOW spr round 42 (radius: 25)
[22:59:46 -32691.896145] Model parameter optimization (eps = 0.100000)

[22:59:51] [worker #0] ML tree search #19, logLikelihood: -32691.828102


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.256357,0.487870) (0.186413,0.930955) (0.443102,0.849948) (0.114128,2.845717) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -32383.893755

AIC score: 68777.787510 / AICc score: 8112837.787510 / BIC score: 73744.847823
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=88).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 181 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P01772/3_mltree/P01772.raxml.log

Analysis started: 13-Jul-2021 22:26:52 / finished: 14-Jul-2021 21:26:44

Elapsed time: 82791.925 seconds