RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 02:37:37 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/2_msa/P01116_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/3_mltree/P01116.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622677057 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/2_msa/P01116_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 189 sites WARNING: Sequences sp_P83831_RAS1_DROSI_7240 and sp_P08646_RAS1_DROME_7227 are exactly identical! WARNING: Sequences sp_P83831_RAS1_DROSI_7240 and sp_B4HKC7_RAS1_DROSE_7238 are exactly identical! WARNING: Sequences sp_P83831_RAS1_DROSI_7240 and sp_B3M185_RAS1_DROAN_7217 are exactly identical! WARNING: Sequences tr_Q71TY0_Q71TY0_DROSI_7240 and sp_P08645_RAP1_DROME_7227 are exactly identical! WARNING: Sequences tr_Q71TY0_Q71TY0_DROSI_7240 and tr_B4HW18_B4HW18_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A158P003_A0A158P003_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_F4X3L6_F4X3L6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A026VTT4_A0A026VTT4_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A151X3U7_A0A151X3U7_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195E0B7_A0A195E0B7_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195BN20_A0A195BN20_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195F2F7_A0A195F2F7_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195CQM9_A0A195CQM9_9HYME_456900 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_H2LMP0_H2LMP0_ORYLA_8090 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_M3ZUW3_M3ZUW3_XIPMA_8083 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_A0A087XDA1_A0A087XDA1_POEFO_48698 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_A0A2I4AXH6_A0A2I4AXH6_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q503B6_Q503B6_DANRE_7955 and tr_A0A3B1KCE5_A0A3B1KCE5_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q503B6_Q503B6_DANRE_7955 and tr_A0A2D0Q8Q2_A0A2D0Q8Q2_ICTPU_7998 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A0Q3MBH7_A0A0Q3MBH7_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A091JP66_A0A091JP66_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A091VI53_A0A091VI53_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A087QVR0_A0A087QVR0_APTFO_9233 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A093JQQ0_A0A093JQQ0_STRCA_441894 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A091WJR9_A0A091WJR9_OPIHO_30419 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A099ZLX1_A0A099ZLX1_TINGU_94827 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A091FN60_A0A091FN60_9AVES_55661 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A0A0AS94_A0A0A0AS94_CHAVO_50402 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A091ISC6_A0A091ISC6_CALAN_9244 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A1U7RJK5_A0A1U7RJK5_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P08642_RASH_CHICK_9031 and tr_A0A226MNN0_A0A226MNN0_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q5F352_RASN_CHICK_9031 and tr_A0A0Q3WUB5_A0A0Q3WUB5_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P32883_RASK_MOUSE_10090 and sp_P08644_RASK_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_G1RA62_G1RA62_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_G3I3F4_G3I3F4_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A2J8XRZ5_A0A2J8XRZ5_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_K7ALD7_K7ALD7_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and sp_P20171_RASH_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A287D4T5_A0A287D4T5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and sp_P01112_RASH_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_F7F5K9_F7F5K9_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A096MNJ8_A0A096MNJ8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A091D5P9_A0A091D5P9_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A0D9RF63_A0A0D9RF63_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A1U7Q533_A0A1U7Q533_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A2K5LMV2_A0A2K5LMV2_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A2K6D7R5_A0A2K6D7R5_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A2K6A751_A0A2K6A751_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q61411_RASH_MOUSE_10090 and tr_A0A2R9A1W2_A0A2R9A1W2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2I3HAD5_A0A2I3HAD5_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_G1QCG3_G1QCG3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2I2YDK9_A0A2I2YDK9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_H2N6A2_H2N6A2_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_G1TRA4_G1TRA4_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_F1PHV7_F1PHV7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_H2PZQ7_H2PZQ7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_F7BMJ8_F7BMJ8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_W5QFK5_W5QFK5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and sp_Q04970_RASN_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_I3MT44_I3MT44_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and sp_P01111_RASN_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A1D5QQS3_A0A1D5QQS3_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_G5ATE8_G5ATE8_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_G3TLL0_G3TLL0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and sp_Q2MJK3_RASN_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_G7NX34_G7NX34_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A5D7R9_A5D7R9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_L5K2M8_L5K2M8_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2I2UNV5_A0A2I2UNV5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A096NE82_A0A096NE82_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A0D9S680_A0A0D9S680_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2K5NFZ6_A0A2K5NFZ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2K6E8J4_A0A2K6E8J4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2K5ZR38_A0A2K5ZR38_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2R9BN07_A0A2R9BN07_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2U3V592_A0A2U3V592_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2Y9DST5_A0A2Y9DST5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2Y9IYW0_A0A2Y9IYW0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A2Y9PBA0_A0A2Y9PBA0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A384CMD2_A0A384CMD2_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y2Z6_M3Y2Z6_MUSPF_9669 and tr_A0A383Z2W3_A0A383Z2W3_BALAS_310752 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_B2WGT0_B2WGT0_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_A0A2W1GU84_A0A2W1GU84_9PLEO_45151 are exactly identical! WARNING: Sequences sp_B4JFU8_RAS1_DROGR_7222 and tr_A0A0M4ERF3_A0A0M4ERF3_DROBS_30019 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_G1PTH5_G1PTH5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_G3QYD4_G3QYD4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A2I3T6U4_A0A2I3T6U4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_H0VHH8_H0VHH8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and sp_P01116_RASK_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_F6SFG7_F6SFG7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_G5BQA1_G5BQA1_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_U3BT07_U3BT07_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A287B854_A0A287B854_PIG_9823 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A2I3NH01_A0A2I3NH01_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A0D9R5Y6_A0A0D9R5Y6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A3Q0E646_A0A3Q0E646_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A2K5LFF0_A0A2K5LFF0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A2K6EAW1_A0A2K6EAW1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A2K5XYR5_A0A2K5XYR5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QZK0_G1QZK0_NOMLE_61853 and tr_A0A2R9BMS1_A0A2R9BMS1_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3KHF8_J3KHF8_COCIM_246410 and tr_E9DHG0_E9DHG0_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KHF8_J3KHF8_COCIM_246410 and tr_A0A0J6XYR0_A0A0J6XYR0_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q5U8_B6Q5U8_TALMQ_441960 and tr_A0A093Y0W4_A0A093Y0W4_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A7F871_A7F871_SCLS1_665079 and tr_M7TTJ5_M7TTJ5_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_A0A2I2YWA2_A0A2I2YWA2_GORGO_9595 and tr_G7PNN4_G7PNN4_MACFA_9541 are exactly identical! WARNING: Sequences tr_C0NNY9_C0NNY9_AJECG_447093 and tr_C6HM61_C6HM61_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0NNY9_C0NNY9_AJECG_447093 and tr_F0UMY8_F0UMY8_AJEC8_544711 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_K7G9J5_K7G9J5_PELSI_13735 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_H0ZPS0_H0ZPS0_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_U3JMM7_U3JMM7_FICAL_59894 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_U3J8L1_U3J8L1_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A0Q3X8E7_A0A0Q3X8E7_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A091FA76_A0A091FA76_CORBR_85066 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A091JH63_A0A091JH63_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A091V1Z7_A0A091V1Z7_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A087R1L3_A0A087R1L3_APTFO_9233 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A093H8V6_A0A093H8V6_STRCA_441894 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A091XRZ7_A0A091XRZ7_OPIHO_30419 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A099ZCM6_A0A099ZCM6_TINGU_94827 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A091G8P9_A0A091G8P9_9AVES_55661 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A0A0A7C2_A0A0A0A7C2_CHAVO_50402 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A091HPB7_A0A091HPB7_CALAN_9244 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A218UH66_A0A218UH66_9PASE_299123 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A226MTE1_A0A226MTE1_CALSU_9009 are exactly identical! WARNING: Sequences sp_P79800_RASK_MELGA_9103 and tr_A0A226P486_A0A226P486_COLVI_9014 are exactly identical! WARNING: Sequences tr_B8LSZ3_B8LSZ3_TALSN_441959 and tr_A0A225AQV3_A0A225AQV3_9EURO_1441469 are exactly identical! WARNING: Sequences sp_P22126_RAS1_NEUCR_367110 and tr_G4UII9_G4UII9_NEUT9_510952 are exactly identical! WARNING: Sequences sp_Q295X7_RAS1_DROPS_46245 and sp_B4GFJ8_RAS1_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NH14_B8NH14_ASPFN_332952 and tr_Q2UE83_Q2UE83_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NH14_B8NH14_ASPFN_332952 and tr_A0A1S9DZX2_A0A1S9DZX2_ASPOZ_5062 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_G0PMA1_G0PMA1_CAEBE_135651 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_E3N5N3_E3N5N3_CAERE_31234 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A8Y0M9_A8Y0M9_CAEBR_6238 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A0A1I7U615_A0A1I7U615_9PELO_1561998 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A0A261BYR9_A0A261BYR9_9PELO_1503980 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A0A2G5U138_A0A2G5U138_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A179UDF6_A0A179UDF6_BLAGS_559298 and tr_C5GJD4_C5GJD4_AJEDR_559297 are exactly identical! WARNING: Sequences tr_F1PXZ9_F1PXZ9_CANLF_9615 and tr_F6ULV3_F6ULV3_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1PXZ9_F1PXZ9_CANLF_9615 and tr_F6Z5N3_F6Z5N3_MONDO_13616 are exactly identical! WARNING: Sequences tr_F1PXZ9_F1PXZ9_CANLF_9615 and tr_E1BMX0_E1BMX0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_J9P550_J9P550_CANLF_9615 and tr_F6TRI4_F6TRI4_HORSE_9796 are exactly identical! WARNING: Sequences tr_J9P550_J9P550_CANLF_9615 and tr_M3WSA0_M3WSA0_FELCA_9685 are exactly identical! WARNING: Sequences tr_J9P550_J9P550_CANLF_9615 and tr_A0A2U3W6N2_A0A2U3W6N2_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9P550_J9P550_CANLF_9615 and tr_A0A2Y9II29_A0A2Y9II29_ENHLU_391180 are exactly identical! WARNING: Sequences tr_W5QFH7_W5QFH7_SHEEP_9940 and tr_A0A1U7QR87_A0A1U7QR87_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5QFH7_W5QFH7_SHEEP_9940 and tr_A0A384B5J9_A0A384B5J9_BALAS_310752 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_W7M2A1_W7M2A1_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A0C4DHU6_A0A0C4DHU6_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_S0DU73_S0DU73_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_N4U6L3_N4U6L3_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_X0CND5_X0CND5_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_Q874F1_Q874F1_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A2H3HUQ0_A0A2H3HUQ0_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A2K0W080_A0A2K0W080_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A365N836_A0A365N836_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9F2I2_E9F2I2_METRA_655844 and tr_A0A0D9P282_A0A0D9P282_METAN_1291518 are exactly identical! WARNING: Sequences tr_A0A3B5PY16_A0A3B5PY16_XIPMA_8083 and tr_I3KB26_I3KB26_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5PY16_A0A3B5PY16_XIPMA_8083 and tr_A0A087X9L5_A0A087X9L5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5PY16_A0A3B5PY16_XIPMA_8083 and tr_A0A2I4AZV8_A0A2I4AZV8_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B5PY16_A0A3B5PY16_XIPMA_8083 and tr_A0A2U9C0C6_A0A2U9C0C6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A3B5Q8X6_A0A3B5Q8X6_XIPMA_8083 and tr_I3KJ34_I3KJ34_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A087ZZ92_A0A087ZZ92_APIME_7460 and tr_A0A0L7R368_A0A0L7R368_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZZ92_A0A087ZZ92_APIME_7460 and tr_A0A2A3EB23_A0A2A3EB23_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AUS1_A0A088AUS1_APIME_7460 and tr_A0A2A3ER73_A0A2A3ER73_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NBH4_A0A158NBH4_ATTCE_12957 and tr_F4X8P7_F4X8P7_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NBH4_A0A158NBH4_ATTCE_12957 and tr_A0A195DRH7_A0A195DRH7_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NBH4_A0A158NBH4_ATTCE_12957 and tr_A0A195BAI3_A0A195BAI3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NBH4_A0A158NBH4_ATTCE_12957 and tr_A0A195FCW5_A0A195FCW5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NBH4_A0A158NBH4_ATTCE_12957 and tr_A0A151IGY0_A0A151IGY0_9HYME_456900 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_A0A3B5KAJ6_A0A3B5KAJ6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_W5KP26_W5KP26_ASTMX_7994 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_C1BIF2_C1BIF2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_W5UBA3_W5UBA3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_A0A2U9BFL6_A0A2U9BFL6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H0XV02_H0XV02_OTOGA_30611 and sp_P12825_RASN_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H0XV02_H0XV02_OTOGA_30611 and tr_A0A3Q0CWE4_A0A3Q0CWE4_MESAU_10036 are exactly identical! WARNING: Sequences tr_H0XV02_H0XV02_OTOGA_30611 and tr_A0A2U3ZGM5_A0A2U3ZGM5_ODORO_9708 are exactly identical! WARNING: Sequences tr_H0XV02_H0XV02_OTOGA_30611 and tr_A0A2U3XAI8_A0A2U3XAI8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A3B5KA14_A0A3B5KA14_TAKRU_31033 and tr_Q4S7E9_Q4S7E9_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5KFE1_A0A3B5KFE1_TAKRU_31033 and tr_Q4SAD9_Q4SAD9_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2SV97_H2SV97_TAKRU_31033 and tr_H3D4L1_H3D4L1_TETNG_99883 are exactly identical! WARNING: Sequences tr_G9P1A6_G9P1A6_HYPAI_452589 and tr_A0A0W7VLG7_A0A0W7VLG7_9HYPO_398673 are exactly identical! WARNING: Sequences tr_G9P1A6_G9P1A6_HYPAI_452589 and tr_A0A2T3ZLB0_A0A2T3ZLB0_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_A0A0K0J2J0_A0A0K0J2J0_BRUMA_6279 and tr_A0A0N4SXH6_A0A0N4SXH6_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0J2J0_A0A0K0J2J0_BRUMA_6279 and tr_A0A0R3S3A7_A0A0R3S3A7_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_G7XP39_G7XP39_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_G3XRA0_G3XRA0_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A117DUH2_A0A117DUH2_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A146FP30_A0A146FP30_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A1L9ND12_A0A1L9ND12_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A317WJU8_A0A317WJU8_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A319AZQ6_A0A319AZQ6_9EURO_1450533 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V0SJE4_A0A0V0SJE4_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V1CHH0_A0A0V1CHH0_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V0W779_A0A0V0W779_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V0VKC6_A0A0V0VKC6_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V1KXT9_A0A0V1KXT9_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V0ZF87_A0A0V0ZF87_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V1MWY4_A0A0V1MWY4_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5S870_E5S870_TRISP_6334 and tr_A0A0V1GXI1_A0A0V1GXI1_9BILA_268475 are exactly identical! WARNING: Sequences tr_Q7QK91_Q7QK91_ANOGA_7165 and tr_A0A084W105_A0A084W105_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G9MSN8_G9MSN8_HYPVG_413071 and tr_G0R9N4_G0R9N4_HYPJQ_431241 are exactly identical! WARNING: Sequences tr_G9MSN8_G9MSN8_HYPVG_413071 and tr_A0A0F9WW85_A0A0F9WW85_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9MSN8_G9MSN8_HYPVG_413071 and tr_A0A2T4AV23_A0A2T4AV23_TRIHA_983964 are exactly identical! WARNING: Sequences tr_G3PDS2_G3PDS2_GASAC_69293 and tr_A0A060WX65_A0A060WX65_ONCMY_8022 are exactly identical! WARNING: Sequences tr_G3PDS2_G3PDS2_GASAC_69293 and tr_A0A2D0QZP7_A0A2D0QZP7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_B5G0X7_B5G0X7_TAEGU_59729 and tr_U3KCC9_U3KCC9_FICAL_59894 are exactly identical! WARNING: Sequences tr_B5G0X7_B5G0X7_TAEGU_59729 and tr_A0A091F2K6_A0A091F2K6_CORBR_85066 are exactly identical! WARNING: Sequences tr_B5G0X7_B5G0X7_TAEGU_59729 and tr_A0A093PMP8_A0A093PMP8_9PASS_328815 are exactly identical! WARNING: Sequences tr_B5G0X7_B5G0X7_TAEGU_59729 and tr_A0A218UXP6_A0A218UXP6_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0YRV5_H0YRV5_TAEGU_59729 and tr_A0A218UKE7_A0A218UKE7_9PASE_299123 are exactly identical! WARNING: Sequences tr_B4N5E9_B4N5E9_DROWI_7260 and tr_A0A1W4W721_A0A1W4W721_DROFC_30025 are exactly identical! WARNING: Sequences tr_F9XIZ8_F9XIZ8_ZYMTI_336722 and tr_A0A1X7S3P9_A0A1X7S3P9_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G0P6S6_G0P6S6_CAEBE_135651 and tr_A8X0X5_A8X0X5_CAEBR_6238 are exactly identical! WARNING: Sequences tr_G0P6S6_G0P6S6_CAEBE_135651 and tr_A0A1I7TZD7_A0A1I7TZD7_9PELO_1561998 are exactly identical! WARNING: Sequences tr_G0P6S6_G0P6S6_CAEBE_135651 and tr_A0A2G5U463_A0A2G5U463_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F6WDS0_F6WDS0_XENTR_8364 and tr_A0A1L8HE10_A0A1L8HE10_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q28EW2_Q28EW2_XENTR_8364 and tr_Q8UUZ4_Q8UUZ4_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q640R7_RAP1B_XENTR_8364 and tr_A0A1L8GUG3_A0A1L8GUG3_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3M7W2_E3M7W2_CAERE_31234 and tr_A0A261A2E7_A0A261A2E7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3QJJ4_E3QJJ4_COLGM_645133 and tr_N4VQQ5_N4VQQ5_COLOR_1213857 are exactly identical! WARNING: Sequences tr_F2SR54_F2SR54_TRIRC_559305 and tr_F2PK96_F2PK96_TRIEC_559882 are exactly identical! WARNING: Sequences tr_F2SR54_F2SR54_TRIRC_559305 and tr_A0A059J0A0_A0A059J0A0_9EURO_1215338 are exactly identical! WARNING: Sequences tr_D2H1A6_D2H1A6_AILME_9646 and tr_M3WPC2_M3WPC2_FELCA_9685 are exactly identical! WARNING: Sequences tr_D2H1A6_D2H1A6_AILME_9646 and tr_A0A1S2ZE23_A0A1S2ZE23_ERIEU_9365 are exactly identical! WARNING: Sequences tr_D2H1A6_D2H1A6_AILME_9646 and tr_A0A2U3ZSY3_A0A2U3ZSY3_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2H1A6_D2H1A6_AILME_9646 and tr_A0A2U3X8I2_A0A2U3X8I2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_D2H1A6_D2H1A6_AILME_9646 and tr_A0A2Y9L483_A0A2Y9L483_ENHLU_391180 are exactly identical! WARNING: Sequences tr_D2H1A6_D2H1A6_AILME_9646 and tr_A0A384C8Z7_A0A384C8Z7_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LVE9_G1LVE9_AILME_9646 and tr_A0A384CSM8_A0A384CSM8_URSMA_29073 are exactly identical! WARNING: Sequences tr_L8FSB6_L8FSB6_PSED2_658429 and tr_A0A1B8F3D8_A0A1B8F3D8_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_T0MEA4_T0MEA4_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_A0A010QSB8_A0A010QSB8_9PEZI_1445577 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_A0A135S4X3_A0A135S4X3_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_A0A1G4AUM5_A0A1G4AUM5_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_S2JXA0_S2JXA0_MUCC1_1220926 and tr_A0A0C9LTA8_A0A0C9LTA8_9FUNG_91626 are exactly identical! WARNING: Sequences tr_S2JXA0_S2JXA0_MUCC1_1220926 and tr_A0A168KRX1_A0A168KRX1_MUCCL_747725 are exactly identical! WARNING: Sequences tr_S2KBC5_S2KBC5_MUCC1_1220926 and tr_A0A168LE37_A0A168LE37_MUCCL_747725 are exactly identical! WARNING: Sequences tr_M2SS60_M2SS60_COCSN_665912 and tr_M2UED0_M2UED0_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SS60_M2SS60_COCSN_665912 and tr_W6XNP0_W6XNP0_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SS60_M2SS60_COCSN_665912 and tr_W6ZAI0_W6ZAI0_COCMI_930090 are exactly identical! WARNING: Sequences tr_V2X2D7_V2X2D7_MONRO_1381753 and tr_A0A0W0FJ59_A0A0W0FJ59_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A3B1K2V5_A0A3B1K2V5_ASTMX_7994 and tr_W5UGF2_W5UGF2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A015N6D6_A0A015N6D6_9GLOM_1432141 and tr_A0A2I1GE29_A0A2I1GE29_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044T9F2_A0A044T9F2_ONCVO_6282 and tr_A0A182DX83_A0A182DX83_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TKE1_A0A044TKE1_ONCVO_6282 and tr_A0A183H200_A0A183H200_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A044TKE1_A0A044TKE1_ONCVO_6282 and tr_A0A182E7S5_A0A182E7S5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A066XT04_A0A066XT04_COLSU_1173701 and tr_A0A161WP53_A0A161WP53_9PEZI_708197 are exactly identical! WARNING: Sequences tr_A0A066XT04_A0A066XT04_COLSU_1173701 and tr_A0A167AE37_A0A167AE37_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A084QD88_A0A084QD88_STAC4_1283841 and tr_A0A084R9E3_A0A084R9E3_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A0F8WD52_A0A0F8WD52_9EURO_308745 and tr_A0A2T5MA29_A0A2T5MA29_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0FJ42_A0A0K0FJ42_STRVS_75913 and tr_A0A0N5C684_A0A0N5C684_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0G0S3_A0A0K0G0S3_STRVS_75913 and tr_A0A0N5BZR1_A0A0N5BZR1_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0EJZ3_A0A0K0EJZ3_STRER_6248 and tr_A0A090LCQ5_A0A090LCQ5_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A2A9P428_A0A2A9P428_9HYPO_268505 and tr_A0A369HEZ6_A0A369HEZ6_9HYPO_2039874 are exactly identical! WARNING: Sequences tr_A0A0S7E363_A0A0S7E363_9EURO_293939 and tr_A0A2I1CIF2_A0A2I1CIF2_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A0W8D2T0_A0A0W8D2T0_PHYNI_4790 and tr_W2MSC6_W2MSC6_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A091JY38_A0A091JY38_EGRGA_188379 and tr_A0A093HB21_A0A093HB21_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A194R663_A0A194R663_PAPMA_76193 and tr_A0A194QFT7_A0A194QFT7_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091UY60_A0A091UY60_NIPNI_128390 and tr_A0A0A0ANM0_A0A0A0ANM0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0D2KD29_A0A0D2KD29_9EURO_1442371 and tr_A0A0D2B783_A0A0D2B783_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A099ZJ18_A0A099ZJ18_TINGU_94827 and tr_A0A091GL04_A0A091GL04_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0G4PIF1_A0A0G4PIF1_PENCA_1429867 and tr_A0A1V6NHH5_A0A1V6NHH5_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0G4PIF1_A0A0G4PIF1_PENCA_1429867 and tr_A0A1V6QME9_A0A1V6QME9_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0V1PBB7_A0A0V1PBB7_9BILA_92180 and tr_A0A0V0TIE8_A0A0V0TIE8_9BILA_144512 are exactly identical! WARNING: Sequences tr_I1RZD9_I1RZD9_GIBZE_229533 and tr_A0A1B8AFQ1_A0A1B8AFQ1_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A177DEV7_A0A177DEV7_ALTAL_5599 and tr_A0A364N9V7_A0A364N9V7_9PLEO_183478 are exactly identical! WARNING: Sequences tr_A0A163ME63_A0A163ME63_ABSGL_4829 and tr_A0A1X2I1Z1_A0A1X2I1Z1_9FUNG_90262 are exactly identical! WARNING: Sequences tr_A0A1S3ML54_A0A1S3ML54_SALSA_8030 and tr_A0A060WAL9_A0A060WAL9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MLG4_A0A1S3MLG4_SALSA_8030 and tr_A0A060WQG0_A0A060WQG0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X2X6_B5X2X6_SALSA_8030 and tr_A0A060XUW2_A0A060XUW2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C0HAH5_C0HAH5_SALSA_8030 and tr_A0A060XMH4_A0A060XMH4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1F5LZR5_A0A1F5LZR5_9EURO_1835702 and tr_A0A1V6PWP2_A0A1V6PWP2_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1L9WR94_A0A1L9WR94_ASPAC_690307 and tr_A0A319CHM7_A0A319CHM7_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WR94_A0A1L9WR94_ASPAC_690307 and tr_A0A2V5I2J4_A0A2V5I2J4_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WR94_A0A1L9WR94_ASPAC_690307 and tr_A0A2V5GP62_A0A2V5GP62_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3RJD6_A0A1R3RJD6_ASPC5_602072 and tr_A0A317XEI8_A0A317XEI8_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1V8UDQ2_A0A1V8UDQ2_9PEZI_1974281 and tr_A0A1V8SDV1_A0A1V8SDV1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8UDQ2_A0A1V8UDQ2_9PEZI_1974281 and tr_A0A1V8TEG1_A0A1V8TEG1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A226NMA9_A0A226NMA9_CALSU_9009 and tr_A0A226P1T1_A0A226P1T1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3EME9_A0A2H3EME9_ARMGA_47427 and tr_A0A2H3C2K0_A0A2H3C2K0_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2D0Q461_A0A2D0Q461_ICTPU_7998 and tr_W5U8N6_W5U8N6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2B7X9G9_A0A2B7X9G9_9EURO_2060905 and tr_A0A1J9Q4Z6_A0A1J9Q4Z6_9EURO_1658174 are exactly identical! WARNING: Sequences tr_A0A2U4BFI5_A0A2U4BFI5_TURTR_9739 and tr_A0A2Y9NF08_A0A2Y9NF08_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BFI5_A0A2U4BFI5_TURTR_9739 and tr_A0A2Y9T1N8_A0A2Y9T1N8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CM92_A0A2U4CM92_TURTR_9739 and tr_A0A2Y9MGR2_A0A2Y9MGR2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CM92_A0A2U4CM92_TURTR_9739 and tr_A0A2Y9EVH5_A0A2Y9EVH5_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 287 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116.raxml.reduced.phy Alignment comprises 1 partitions and 189 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 189 Gaps: 4.70 % Invariant sites: 0.53 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/3_mltree/P01116.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 48 / 3840 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -34039.700050 [00:00:00 -34039.700050] Initial branch length optimization [00:00:00 -33803.615223] Model parameter optimization (eps = 0.100000) [00:00:25] Tree #1, final logLikelihood: -33648.937617 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.357299,0.259559) (0.334280,0.425402) (0.174457,1.366895) (0.133964,3.930839) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P01116/4_raxmlng_ancestral/P01116.raxml.log Analysis started: 03-Jun-2021 02:37:37 / finished: 03-Jun-2021 02:38:05 Elapsed time: 27.485 seconds Consumed energy: 2.154 Wh