RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:23:07 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/2_msa/P00441_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/3_mltree/P00441.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676187 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/2_msa/P00441_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 154 sites WARNING: Sequences sp_P61852_SODC_DROSI_7240 and sp_P61851_SODC_DROME_7227 are exactly identical! WARNING: Sequences sp_P61852_SODC_DROSI_7240 and sp_P61854_SODC_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A0E1RXL6_A0A0E1RXL6_COCIM_246410 and tr_A0A0J7B1W7_A0A0J7B1W7_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QEB3_B6QEB3_TALMQ_441960 and tr_A0A093V1C6_A0A093V1C6_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2VRY4_B2VRY4_PYRTR_426418 and tr_A0A2W1I1L7_A0A2W1I1L7_9PLEO_45151 are exactly identical! WARNING: Sequences tr_C0NTZ2_C0NTZ2_AJECG_447093 and tr_F0ULK5_F0ULK5_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NTZ2_C0NTZ2_AJECG_447093 and tr_A6QTD6_A6QTD6_AJECN_339724 are exactly identical! WARNING: Sequences sp_Q95086_SODC_DROPS_46245 and tr_B4GZN9_B4GZN9_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NUD8_B8NUD8_ASPFN_332952 and sp_Q877B5_SODC_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NUD8_B8NUD8_ASPFN_332952 and tr_A0A172PYW7_A0A172PYW7_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179U9V6_A0A179U9V6_BLAGS_559298 and tr_C5GHK9_C5GHK9_AJEDR_559297 are exactly identical! WARNING: Sequences sp_P60052_SODC_PANTR_9598 and sp_P00441_SODC_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P60052_SODC_PANTR_9598 and tr_A0A2R8ZYG2_A0A2R8ZYG2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9FRC3_F9FRC3_FUSOF_660025 and tr_X0CXG5_X0CXG5_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FRC3_F9FRC3_FUSOF_660025 and tr_A0A2H3TLN0_A0A2H3TLN0_FUSOX_5507 are exactly identical! WARNING: Sequences tr_J4KPZ4_J4KPZ4_BEAB2_655819 and tr_A0A0A2VUV3_A0A0A2VUV3_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4KPZ4_J4KPZ4_BEAB2_655819 and tr_A0A167BMP0_A0A167BMP0_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_K4AX22_K4AX22_SOLLC_4081 and sp_Q43779_SODC2_SOLLC_4081 are exactly identical! WARNING: Sequences sp_P14831_SODCP_SOLLC_4081 and tr_Q7XAV2_Q7XAV2_SOLLC_4081 are exactly identical! WARNING: Sequences tr_A0A158NMI6_A0A158NMI6_ATTCE_12957 and tr_A0A195AZY4_A0A195AZY4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0E0GMF4_A0A0E0GMF4_ORYNI_4536 and sp_A2XGP6_SODC1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GMF4_A0A0E0GMF4_ORYNI_4536 and tr_I1PBB4_I1PBB4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GMF4_A0A0E0GMF4_ORYNI_4536 and tr_A0A0E0NV26_A0A0E0NV26_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GMF4_A0A0E0GMF4_ORYNI_4536 and tr_A0A0D3FIH3_A0A0D3FIH3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GMF4_A0A0E0GMF4_ORYNI_4536 and sp_Q0DRV6_SODC1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0I5B9_A0A0E0I5B9_ORYNI_4536 and tr_B8B5M4_B8B5M4_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0I5B9_A0A0E0I5B9_ORYNI_4536 and tr_I1QCZ5_I1QCZ5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0I5B9_A0A0E0I5B9_ORYNI_4536 and tr_A0A0E0QCD8_A0A0E0QCD8_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I5B9_A0A0E0I5B9_ORYNI_4536 and tr_A0A0D3GUP1_A0A0D3GUP1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0I5B9_A0A0E0I5B9_ORYNI_4536 and sp_P28757_SODC2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and tr_A2YY59_A2YY59_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and tr_I1QKG1_I1QKG1_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and tr_A0A0E0EP29_A0A0E0EP29_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and tr_A0A0E0QMF1_A0A0E0QMF1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and tr_A0A0D3H388_A0A0D3H388_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and tr_A0A0E0AYZ6_A0A0E0AYZ6_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IFV1_A0A0E0IFV1_ORYNI_4536 and sp_P93407_SODCP_ORYSJ_39947 are exactly identical! WARNING: Sequences sp_A2QMY6_SODC_ASPNC_425011 and tr_G7XH02_G7XH02_ASPKW_1033177 are exactly identical! WARNING: Sequences sp_A2QMY6_SODC_ASPNC_425011 and tr_G3Y0L1_G3Y0L1_ASPNA_380704 are exactly identical! WARNING: Sequences sp_A2QMY6_SODC_ASPNC_425011 and tr_A0A100IE39_A0A100IE39_ASPNG_5061 are exactly identical! WARNING: Sequences sp_A2QMY6_SODC_ASPNC_425011 and tr_A0A1L9MXZ0_A0A1L9MXZ0_ASPTU_767770 are exactly identical! WARNING: Sequences tr_H1UZ31_H1UZ31_COLHI_759273 and tr_A0A167EA01_A0A167EA01_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_G2YHA8_G2YHA8_BOTF4_999810 and tr_M7TY19_M7TY19_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_E3LQP7_E3LQP7_CAERE_31234 and tr_A0A261BE96_A0A261BE96_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3MK76_E3MK76_CAERE_31234 and tr_A0A261AN06_A0A261AN06_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B3S9R7_B3S9R7_TRIAD_10228 and tr_A0A369RR31_A0A369RR31_9METZ_287889 are exactly identical! WARNING: Sequences tr_A0A0D2XGN2_A0A0D2XGN2_FUSO4_426428 and tr_A0A2H3GQ94_A0A2H3GQ94_FUSOX_327505 are exactly identical! WARNING: Sequences tr_K9FP29_K9FP29_PEND2_1170229 and tr_A0A0A2L571_A0A0A2L571_PENIT_40296 are exactly identical! WARNING: Sequences tr_L2GBJ9_L2GBJ9_COLFN_1213859 and tr_T0JZK9_T0JZK9_COLGC_1237896 are exactly identical! WARNING: Sequences tr_M4F001_M4F001_BRARP_51351 and tr_A0A078GZ68_A0A078GZ68_BRANA_3708 are exactly identical! WARNING: Sequences tr_S0EAI1_S0EAI1_GIBF5_1279085 and tr_A0A365ND57_A0A365ND57_GIBIN_948311 are exactly identical! WARNING: Sequences tr_M2S8N7_M2S8N7_COCSN_665912 and tr_W6YG19_W6YG19_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2S8N7_M2S8N7_COCSN_665912 and tr_W6YY07_W6YY07_COCMI_930090 are exactly identical! WARNING: Sequences tr_A0A010RC79_A0A010RC79_9PEZI_1445577 and tr_A0A1G4BP43_A0A1G4BP43_9PEZI_1209926 are exactly identical! WARNING: Sequences sp_P24706_SODC_ONCVO_6282 and tr_A0A182ELC9_A0A182ELC9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A074WW38_A0A074WW38_9PEZI_1043004 and tr_A0A074YHC1_A0A074YHC1_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A094E1L9_A0A094E1L9_9PEZI_1420912 and tr_A0A1B8GI55_A0A1B8GI55_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0D2TZK0_A0A0D2TZK0_GOSRA_29730 and tr_A0A1U8IC35_A0A1U8IC35_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8V5S0_A0A0F8V5S0_9EURO_308745 and tr_A0A2T5M9W9_A0A2T5M9W9_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0M9EYA5_A0A0M9EYA5_FUSLA_179993 and tr_A0A366QM66_A0A366QM66_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_A0A0C9MSW7_A0A0C9MSW7_9FUNG_91626 and tr_A0A168KEL8_A0A168KEL8_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A0V0S096_A0A0V0S096_9BILA_6336 and tr_A0A0V1A6R0_A0A0V1A6R0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D8N6_A0A0V1D8N6_TRIBR_45882 and tr_A0A0V0V7I0_A0A0V0V7I0_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D8N6_A0A0V1D8N6_TRIBR_45882 and tr_A0A0V1NZ65_A0A0V1NZ65_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D8N6_A0A0V1D8N6_TRIBR_45882 and tr_A0A0V0U8G8_A0A0V0U8G8_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0W024_A0A0V0W024_9BILA_92179 and tr_A0A0V1LR15_A0A0V1LR15_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A098DGQ1_A0A098DGQ1_GIBZE_229533 and tr_A0A2T4GM98_A0A2T4GM98_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A1S3ZTX1_A0A1S3ZTX1_TOBAC_4097 and tr_A0A1J6J7C2_A0A1J6J7C2_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3ZTX1_A0A1S3ZTX1_TOBAC_4097 and tr_A0A1U7XJM1_A0A1U7XJM1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BCV5_A0A1S4BCV5_TOBAC_4097 and tr_A0A1U7WC48_A0A1U7WC48_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1B8EG75_A0A1B8EG75_9PEZI_1524831 and tr_A0A1B8CCH6_A0A1B8CCH6_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A1B8EG75_A0A1B8EG75_9PEZI_1524831 and tr_A0A1B8EMU8_A0A1B8EMU8_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A1L9WUB1_A0A1L9WUB1_ASPAC_690307 and tr_A0A319C9M1_A0A319C9M1_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WUB1_A0A1L9WUB1_ASPAC_690307 and tr_A0A318ZP58_A0A318ZP58_9EURO_1450539 are exactly identical! WARNING: Sequences tr_A0A1L9WUB1_A0A1L9WUB1_ASPAC_690307 and tr_A0A2V5I8G8_A0A2V5I8G8_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WUB1_A0A1L9WUB1_ASPAC_690307 and tr_A0A2V5HSW1_A0A2V5HSW1_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3RJV8_A0A1R3RJV8_ASPC5_602072 and tr_A0A317XDJ7_A0A317XDJ7_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1V8UDS8_A0A1V8UDS8_9PEZI_1974281 and tr_A0A1V8T447_A0A1V8T447_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1U8EEV5_A0A1U8EEV5_CAPAN_4072 and tr_B1Q475_B1Q475_CAPCH_80379 are exactly identical! WARNING: Duplicate sequences found: 79 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441.raxml.reduced.phy Alignment comprises 1 partitions and 154 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 154 Gaps: 2.86 % Invariant sites: 6.49 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/3_mltree/P00441.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 39 / 3120 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -62566.670464 [00:00:00 -62566.670464] Initial branch length optimization [00:00:00 -62478.812016] Model parameter optimization (eps = 0.100000) [00:00:17] Tree #1, final logLikelihood: -62244.124521 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.226366,0.382887) (0.347189,0.478477) (0.238866,1.251977) (0.187578,2.389138) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P00441/4_raxmlng_ancestral/P00441.raxml.log Analysis started: 03-Jun-2021 02:23:07 / finished: 03-Jun-2021 02:23:26 Elapsed time: 19.331 seconds Consumed energy: 0.871 Wh