RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 23-Jun-2021 01:10:14 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/2_msa/O95972_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/2_msa/O95972_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 238 sites WARNING: Sequences tr_E1C0T2_E1C0T2_CHICK_9031 and tr_A0A226MNG7_A0A226MNG7_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C0T2_E1C0T2_CHICK_9031 and tr_A0A226P2H3_A0A226P2H3_COLVI_9014 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_G1NMB0_G1NMB0_MELGA_9103 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A091J5V0_A0A091J5V0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A091VXT6_A0A091VXT6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A087R301_A0A087R301_APTFO_9233 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A093HXR7_A0A093HXR7_STRCA_441894 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A091GJ85_A0A091GJ85_9AVES_55661 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A0A0A6F4_A0A0A0A6F4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A091I476_A0A091I476_CALAN_9244 are exactly identical! WARNING: Sequences tr_P87373_P87373_CHICK_9031 and tr_A0A226P9Y7_A0A226P9Y7_COLVI_9014 are exactly identical! WARNING: Sequences sp_P23359_BMP7_MOUSE_10090 and tr_G3V6W8_G3V6W8_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_G3RG26_G3RG26_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_F1PDL1_F1PDL1_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_H2Q8B9_H2Q8B9_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_W5QIU1_W5QIU1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and sp_P12644_BMP4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_F7ACJ7_F7ACJ7_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_U3BA30_U3BA30_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A7LJT9_A7LJT9_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_D2HCK9_D2HCK9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_G8F272_G8F272_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and sp_Q2KJH1_BMP4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_B0CM38_B0CM38_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A0D9RQR1_A0A0D9RQR1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2K5NPX8_A0A2K5NPX8_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2K6CR04_A0A2K6CR04_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2K6AGA5_A0A2K6AGA5_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2U3ZLA5_A0A2U3ZLA5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2U3Z034_A0A2U3Z034_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2Y9LJR5_A0A2Y9LJR5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2Y9NAH8_A0A2Y9NAH8_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A2Y9EIT4_A0A2Y9EIT4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A384CYI9_A0A384CYI9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y272_M3Y272_MUSPF_9669 and tr_A0A384B0Y0_A0A384B0Y0_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y521_M3Y521_MUSPF_9669 and tr_J9P6P0_J9P6P0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y521_M3Y521_MUSPF_9669 and tr_A0A2U3X364_A0A2U3X364_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y521_M3Y521_MUSPF_9669 and tr_A0A2Y9IPN4_A0A2Y9IPN4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_G1P2I8_G1P2I8_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_F7CYF2_F7CYF2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_G7PGI7_G7PGI7_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_F1MT44_F1MT44_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_B0CM78_B0CM78_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_A0A0D9RDH1_A0A0D9RDH1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_A0A2K5NAV9_A0A2K5NAV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_A0A2K6BCE3_A0A2K6BCE3_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_A0A2K5Z7Q6_A0A2K5Z7Q6_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z276_M3Z276_MUSPF_9669 and tr_A0A384B137_A0A384B137_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3QF30_G3QF30_GORGO_9595 and tr_H2QS99_H2QS99_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QF30_G3QF30_GORGO_9595 and tr_A0A2R8Z6Y8_A0A2R8Z6Y8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QUI0_G3QUI0_GORGO_9595 and sp_O95972_BMP15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R9D6_G3R9D6_GORGO_9595 and sp_O60383_GDF9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RZN8_G3RZN8_GORGO_9595 and sp_P12643_BMP2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RZN8_G3RZN8_GORGO_9595 and tr_A0A0D9RM38_A0A0D9RM38_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RZN8_G3RZN8_GORGO_9595 and tr_A0A2R9ABN7_A0A2R9ABN7_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PQU9_H2PQU9_PONAB_9601 and sp_Q6KF10_GDF6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PQU9_H2PQU9_PONAB_9601 and tr_A0A096MW46_A0A096MW46_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PQU9_H2PQU9_PONAB_9601 and tr_A0A2K5P0L5_A0A2K5P0L5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1NA46_G1NA46_MELGA_9103 and tr_A0A091JLD8_A0A091JLD8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NA46_G1NA46_MELGA_9103 and tr_A0A093PGL7_A0A093PGL7_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NA46_G1NA46_MELGA_9103 and tr_A0A226MWB1_A0A226MWB1_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1NA46_G1NA46_MELGA_9103 and tr_A0A226PGR7_A0A226PGR7_COLVI_9014 are exactly identical! WARNING: Sequences sp_P91699_DECA_DROPS_46245 and tr_B4GSL3_B4GSL3_DROPE_7234 are exactly identical! WARNING: Sequences tr_J9P401_J9P401_CANLF_9615 and tr_A0A2U3X2U8_A0A2U3X2U8_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9P401_J9P401_CANLF_9615 and tr_A0A2U3Z3S1_A0A2U3Z3S1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and sp_P18075_BMP7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_F6ZJT0_F6ZJT0_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_G7PFT3_G7PFT3_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A096NNJ3_A0A096NNJ3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A0D9RSE9_A0A0D9RSE9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A2K5KKN9_A0A2K5KKN9_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A2K6AR92_A0A2K6AR92_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2QKM7_H2QKM7_PANTR_9598 and tr_A0A2R9AT21_A0A2R9AT21_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9MZE2_BMP15_SHEEP_9940 and tr_W5PHY7_W5PHY7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_W5Q9G9_W5Q9G9_SHEEP_9940 and tr_A5GFN2_A5GFN2_PIG_9823 are exactly identical! WARNING: Sequences tr_W5Q9G9_W5Q9G9_SHEEP_9940 and tr_F1MLT0_F1MLT0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QBM7_W5QBM7_SHEEP_9940 and tr_A5PJI9_A5PJI9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A088AQN8_A0A088AQN8_APIME_7460 and tr_A0A2A3EIB7_A0A2A3EIB7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P1S4_A0A158P1S4_ATTCE_12957 and tr_F4W6N8_F4W6N8_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158P1S4_A0A158P1S4_ATTCE_12957 and tr_A0A195BSU4_A0A195BSU4_9HYME_520822 are exactly identical! WARNING: Sequences tr_F7H957_F7H957_MACMU_9544 and tr_A0A2K6CFP2_A0A2K6CFP2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7MUB2_G7MUB2_MACMU_9544 and tr_G7P892_G7P892_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7MUB2_G7MUB2_MACMU_9544 and tr_A0A2K5ZW94_A0A2K5ZW94_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3T9G8_G3T9G8_LOXAF_9785 and tr_A0A2Y9DAA8_A0A2Y9DAA8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YZG5_H0YZG5_TAEGU_59729 and tr_A0A093PCY8_A0A093PCY8_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0YZG5_H0YZG5_TAEGU_59729 and tr_A0A218UB34_A0A218UB34_9PASE_299123 are exactly identical! WARNING: Sequences tr_G0MY06_G0MY06_CAEBE_135651 and tr_G0PL14_G0PL14_CAEBE_135651 are exactly identical! WARNING: Sequences tr_A0A287BJW9_A0A287BJW9_PIG_9823 and tr_A0A2Y9JAW0_A0A2Y9JAW0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_D2HR91_D2HR91_AILME_9646 and tr_A0A384D3I4_A0A384D3I4_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1MG34_G1MG34_AILME_9646 and tr_A0A384C8Y4_A0A384C8Y4_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PGY1_G7PGY1_MACFA_9541 and tr_A0A2I3MVB6_A0A2I3MVB6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PGY1_G7PGY1_MACFA_9541 and tr_A0A2K5P775_A0A2K5P775_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PGY1_G7PGY1_MACFA_9541 and tr_A0A2K6CS17_A0A2K6CS17_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NKT8_A0A096NKT8_PAPAN_9555 and tr_A0A2K5N9E7_A0A2K5N9E7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NKT8_A0A096NKT8_PAPAN_9555 and tr_A0A2K6CHI7_A0A2K6CHI7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NQJ9_A0A096NQJ9_PAPAN_9555 and tr_A0A2K6CRN9_A0A2K6CRN9_MACNE_9545 are exactly identical! WARNING: Sequences sp_A9CB18_GDF9_PAPAN_9555 and tr_A0A2K6CRV3_A0A2K6CRV3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151P086_A0A151P086_ALLMI_8496 and tr_A0A1U7S1W5_A0A1U7S1W5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3X7Q4_A0A0Q3X7Q4_AMAAE_12930 and tr_A0A091IVU3_A0A091IVU3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0Q3X7Q4_A0A0Q3X7Q4_AMAAE_12930 and tr_A0A091WZ69_A0A091WZ69_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3X7Q4_A0A0Q3X7Q4_AMAAE_12930 and tr_A0A091GDR2_A0A091GDR2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0Q3X7Q4_A0A0Q3X7Q4_AMAAE_12930 and tr_A0A0A0B0R9_A0A0A0B0R9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0Q3X7Q4_A0A0Q3X7Q4_AMAAE_12930 and tr_A0A091IE24_A0A091IE24_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0Q3X9X3_A0A0Q3X9X3_AMAAE_12930 and tr_A0A091EVJ8_A0A091EVJ8_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0Q3X9X3_A0A0Q3X9X3_AMAAE_12930 and tr_A0A093PMM9_A0A093PMM9_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A0Q3X9X3_A0A0Q3X9X3_AMAAE_12930 and tr_A0A0A0B527_A0A0A0B527_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EC73_A0A091EC73_CORBR_85066 and tr_A0A093PIW4_A0A093PIW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EC73_A0A091EC73_CORBR_85066 and tr_A0A091W333_A0A091W333_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EC73_A0A091EC73_CORBR_85066 and tr_A0A087R1U6_A0A087R1U6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IZH0_A0A091IZH0_EGRGA_188379 and tr_A0A091VR03_A0A091VR03_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 and tr_A0A091UPQ9_A0A091UPQ9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 and tr_A0A087R890_A0A087R890_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 and tr_A0A091W8G1_A0A091W8G1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 and tr_A0A091FUS2_A0A091FUS2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 and tr_A0A0A0AKS8_A0A0A0AKS8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091K3C9_A0A091K3C9_EGRGA_188379 and tr_A0A091IBT1_A0A091IBT1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091V3E0_A0A091V3E0_NIPNI_128390 and tr_A0A091I9M7_A0A091I9M7_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A087QS04_A0A087QS04_APTFO_9233 and tr_A0A093GGN0_A0A093GGN0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A099ZP97_A0A099ZP97_TINGU_94827 and tr_A0A218VDG8_A0A218VDG8_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0A0AKP2_A0A0A0AKP2_CHAVO_50402 and tr_A0A091HVH4_A0A091HVH4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0A0B1D4_A0A0A0B1D4_CHAVO_50402 and tr_A0A2I0M615_A0A2I0M615_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A2I0MU94_A0A2I0MU94_COLLI_8932 and tr_A0A1V4JML8_A0A1V4JML8_PATFA_372326 are exactly identical! WARNING: Sequences tr_R7VUS6_R7VUS6_COLLI_8932 and tr_A0A1V4KDX9_A0A1V4KDX9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V1CT11_A0A0V1CT11_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V0WSR4_A0A0V0WSR4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V0VIT9_A0A0V0VIT9_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V1LAN0_A0A0V1LAN0_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V1PEF8_A0A0V1PEF8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S474_A0A0V0S474_9BILA_6336 and tr_A0A0V0U9I7_A0A0V0U9I7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0Y531_A0A0V0Y531_TRIPS_6337 and tr_A0A0V1MLN6_A0A0V1MLN6_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0Y531_A0A0V0Y531_TRIPS_6337 and tr_A0A0V1I6U8_A0A0V1I6U8_9BILA_268475 are exactly identical! WARNING: Sequences tr_C0HBA5_C0HBA5_SALSA_8030 and tr_A0A060YGS2_A0A060YGS2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NDT4_A0A226NDT4_CALSU_9009 and tr_A0A226PL26_A0A226PL26_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5LHY9_A0A2K5LHY9_CERAT_9531 and tr_A0A2K5XNW2_A0A2K5XNW2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V2A1_A0A2U3V2A1_TURTR_9739 and tr_A0A2Y9MIG4_A0A2Y9MIG4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BV21_A0A2U4BV21_TURTR_9739 and tr_A0A2Y9LYV6_A0A2Y9LYV6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BV21_A0A2U4BV21_TURTR_9739 and tr_A0A2Y9EJA8_A0A2Y9EJA8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9QCJ3_A0A2Y9QCJ3_DELLE_9749 and tr_A0A2Y9T1E2_A0A2Y9T1E2_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 138 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972.raxml.reduced.phy Alignment comprises 1 partitions and 237 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 238 / 237 Gaps: 5.46 % Invariant sites: 2.94 % NOTE: Binary MSA file already exists: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 237 / 18960 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -409085.036967] Initial branch length optimization [00:00:09 -332162.896900] Model parameter optimization (eps = 10.000000) [00:01:15 -331350.021378] AUTODETECT spr round 1 (radius: 5) [00:04:51 -205213.995005] AUTODETECT spr round 2 (radius: 10) [00:08:33 -152271.112575] AUTODETECT spr round 3 (radius: 15) [00:12:35 -117854.483859] AUTODETECT spr round 4 (radius: 20) [00:16:54 -102116.269291] AUTODETECT spr round 5 (radius: 25) [00:21:18 -99513.596838] SPR radius for FAST iterations: 25 (autodetect) [00:21:18 -99513.596838] Model parameter optimization (eps = 3.000000) [00:21:58 -99381.016016] FAST spr round 1 (radius: 25) [00:25:48 -79370.665680] FAST spr round 2 (radius: 25) [00:28:40 -74908.010744] FAST spr round 3 (radius: 25) [00:31:18 -74235.746210] FAST spr round 4 (radius: 25) [00:33:39 -74201.903854] FAST spr round 5 (radius: 25) [00:35:50 -74198.891912] FAST spr round 6 (radius: 25) [00:37:54 -74198.891876] Model parameter optimization (eps = 1.000000) [00:38:22 -74165.179153] SLOW spr round 1 (radius: 5) [00:41:10 -74149.854650] SLOW spr round 2 (radius: 5) [00:43:53 -74149.458047] SLOW spr round 3 (radius: 5) [00:46:32 -74149.457821] SLOW spr round 4 (radius: 10) [00:49:18 -74147.961470] SLOW spr round 5 (radius: 5) [00:52:40 -74147.961090] SLOW spr round 6 (radius: 10) [00:55:46 -74147.961083] SLOW spr round 7 (radius: 15) [00:59:43 -74147.221440] SLOW spr round 8 (radius: 5) [01:03:16 -74147.221433] SLOW spr round 9 (radius: 10) [01:06:33 -74147.221429] SLOW spr round 10 (radius: 15) [01:10:27 -74147.221425] SLOW spr round 11 (radius: 20) [01:12:58] [worker #4] ML tree search #5, logLikelihood: -74139.529662 [01:16:35 -74147.221422] SLOW spr round 12 (radius: 25) [01:24:51 -74147.221418] Model parameter optimization (eps = 0.100000) [01:25:00] [worker #0] ML tree search #1, logLikelihood: -74147.135058 [01:25:00 -411251.573793] Initial branch length optimization [01:25:07 -333991.255578] Model parameter optimization (eps = 10.000000) [01:26:13 -333138.613106] AUTODETECT spr round 1 (radius: 5) [01:29:16] [worker #1] ML tree search #2, logLikelihood: -74154.775545 [01:29:31] [worker #3] ML tree search #4, logLikelihood: -74144.589534 [01:29:53 -206702.872762] AUTODETECT spr round 2 (radius: 10) [01:33:40 -154291.242218] AUTODETECT spr round 3 (radius: 15) [01:37:50 -128281.351415] AUTODETECT spr round 4 (radius: 20) [01:42:37 -104669.805031] AUTODETECT spr round 5 (radius: 25) [01:48:32 -92997.221411] SPR radius for FAST iterations: 25 (autodetect) [01:48:32 -92997.221411] Model parameter optimization (eps = 3.000000) [01:49:11 -92849.164985] FAST spr round 1 (radius: 25) [01:52:38 -75508.923782] FAST spr round 2 (radius: 25) [01:55:17 -74318.040886] FAST spr round 3 (radius: 25) [01:57:42 -74237.782326] FAST spr round 4 (radius: 25) [01:59:58 -74209.168370] FAST spr round 5 (radius: 25) [02:02:05 -74205.126248] FAST spr round 6 (radius: 25) [02:04:08 -74205.125071] Model parameter optimization (eps = 1.000000) [02:04:30 -74160.327732] SLOW spr round 1 (radius: 5) [02:05:04] [worker #2] ML tree search #3, logLikelihood: -74132.443292 [02:07:18 -74145.613676] SLOW spr round 2 (radius: 5) [02:10:02 -74144.590335] SLOW spr round 3 (radius: 5) [02:12:42 -74144.590292] SLOW spr round 4 (radius: 10) [02:15:28 -74144.590073] SLOW spr round 5 (radius: 15) [02:19:48 -74142.941642] SLOW spr round 6 (radius: 5) [02:23:22 -74142.941446] SLOW spr round 7 (radius: 10) [02:26:40 -74142.941421] SLOW spr round 8 (radius: 15) [02:30:43 -74142.941402] SLOW spr round 9 (radius: 20) [02:36:28] [worker #4] ML tree search #10, logLikelihood: -74146.282669 [02:37:19 -74142.941384] SLOW spr round 10 (radius: 25) [02:46:01 -74142.941368] Model parameter optimization (eps = 0.100000) [02:46:20] [worker #0] ML tree search #6, logLikelihood: -74142.151025 [02:46:20 -411180.348984] Initial branch length optimization [02:46:26 -334342.176512] Model parameter optimization (eps = 10.000000) [02:47:37 -333565.321755] AUTODETECT spr round 1 (radius: 5) [02:51:14 -210223.216412] AUTODETECT spr round 2 (radius: 10) [02:55:03 -149167.702988] AUTODETECT spr round 3 (radius: 15) [02:59:08 -113551.600155] AUTODETECT spr round 4 (radius: 20) [03:03:29 -104551.549219] AUTODETECT spr round 5 (radius: 25) [03:05:09] [worker #1] ML tree search #7, logLikelihood: -74139.944446 [03:08:05 -101611.764159] SPR radius for FAST iterations: 25 (autodetect) [03:08:05 -101611.764159] Model parameter optimization (eps = 3.000000) [03:08:44 -101448.975977] FAST spr round 1 (radius: 25) [03:12:28 -79134.092942] FAST spr round 2 (radius: 25) [03:15:16 -75368.785608] FAST spr round 3 (radius: 25) [03:17:51 -74331.446042] FAST spr round 4 (radius: 25) [03:19:54] [worker #2] ML tree search #8, logLikelihood: -74148.310565 [03:20:16 -74259.943342] FAST spr round 5 (radius: 25) [03:22:20] [worker #3] ML tree search #9, logLikelihood: -74134.911790 [03:22:26 -74255.227027] FAST spr round 6 (radius: 25) [03:24:34 -74245.982017] FAST spr round 7 (radius: 25) [03:26:39 -74243.703122] FAST spr round 8 (radius: 25) [03:28:43 -74243.703099] Model parameter optimization (eps = 1.000000) [03:29:08 -74198.693562] SLOW spr round 1 (radius: 5) [03:31:54 -74165.672551] SLOW spr round 2 (radius: 5) [03:34:42 -74165.564687] SLOW spr round 3 (radius: 5) [03:37:23 -74165.564258] SLOW spr round 4 (radius: 10) [03:40:16 -74161.427763] SLOW spr round 5 (radius: 5) [03:43:47 -74161.334355] SLOW spr round 6 (radius: 10) [03:46:55 -74161.334007] SLOW spr round 7 (radius: 15) [03:51:00 -74159.344727] SLOW spr round 8 (radius: 5) [03:54:40 -74158.234184] SLOW spr round 9 (radius: 5) [03:57:52 -74158.234045] SLOW spr round 10 (radius: 10) [04:00:53 -74157.095249] SLOW spr round 11 (radius: 5) [04:03:34] [worker #4] ML tree search #15, logLikelihood: -74149.811787 [04:04:14 -74157.093518] SLOW spr round 12 (radius: 10) [04:07:19 -74157.093155] SLOW spr round 13 (radius: 15) [04:11:19 -74157.092972] SLOW spr round 14 (radius: 20) [04:17:31 -74152.404031] SLOW spr round 15 (radius: 5) [04:19:55] [worker #1] ML tree search #12, logLikelihood: -74152.854505 [04:21:14 -74152.120280] SLOW spr round 16 (radius: 5) [04:24:27 -74152.120109] SLOW spr round 17 (radius: 10) [04:27:28 -74152.120063] SLOW spr round 18 (radius: 15) [04:31:32 -74148.149554] SLOW spr round 19 (radius: 5) [04:35:09 -74148.149466] SLOW spr round 20 (radius: 10) [04:38:27 -74147.220673] SLOW spr round 21 (radius: 5) [04:41:45 -74147.220531] SLOW spr round 22 (radius: 10) [04:43:37] [worker #2] ML tree search #13, logLikelihood: -74141.141305 [04:44:49 -74147.220530] SLOW spr round 23 (radius: 15) [04:48:49 -74147.220529] SLOW spr round 24 (radius: 20) [04:54:59 -74147.220529] SLOW spr round 25 (radius: 25) [05:03:18 -74147.220529] Model parameter optimization (eps = 0.100000) [05:03:26] [worker #0] ML tree search #11, logLikelihood: -74147.180783 [05:03:26 -410692.910491] Initial branch length optimization [05:03:31 -333679.621132] Model parameter optimization (eps = 10.000000) [05:04:47 -332723.393104] AUTODETECT spr round 1 (radius: 5) [05:05:31] [worker #3] ML tree search #14, logLikelihood: -74145.439043 [05:08:24 -211878.845739] AUTODETECT spr round 2 (radius: 10) [05:12:08 -154261.959343] AUTODETECT spr round 3 (radius: 15) [05:16:18 -120318.981358] AUTODETECT spr round 4 (radius: 20) [05:20:46 -105108.038567] AUTODETECT spr round 5 (radius: 25) [05:25:12 -95829.853736] SPR radius for FAST iterations: 25 (autodetect) [05:25:12 -95829.853736] Model parameter optimization (eps = 3.000000) [05:25:48 -95622.540941] FAST spr round 1 (radius: 25) [05:29:35 -81157.136637] FAST spr round 2 (radius: 25) [05:32:38 -74953.298885] FAST spr round 3 (radius: 25) [05:35:04] [worker #4] ML tree search #20, logLikelihood: -74141.448895 [05:35:23 -74231.904495] FAST spr round 4 (radius: 25) [05:37:45 -74178.743408] FAST spr round 5 (radius: 25) [05:39:54 -74173.753945] FAST spr round 6 (radius: 25) [05:39:58] [worker #1] ML tree search #17, logLikelihood: -74141.785080 [05:41:59 -74173.753727] Model parameter optimization (eps = 1.000000) [05:42:18 -74169.635240] SLOW spr round 1 (radius: 5) [05:45:09 -74150.173189] SLOW spr round 2 (radius: 5) [05:47:56 -74145.871532] SLOW spr round 3 (radius: 5) [05:50:43 -74144.671577] SLOW spr round 4 (radius: 5) [05:53:22 -74144.013292] SLOW spr round 5 (radius: 5) [05:55:58 -74144.012779] SLOW spr round 6 (radius: 10) [05:58:43 -74143.782543] SLOW spr round 7 (radius: 5) [06:02:05 -74143.782341] SLOW spr round 8 (radius: 10) [06:05:11 -74143.782202] SLOW spr round 9 (radius: 15) [06:09:10 -74143.782007] SLOW spr round 10 (radius: 20) [06:15:28 -74143.781937] SLOW spr round 11 (radius: 25) [06:18:34] [worker #2] ML tree search #18, logLikelihood: -74158.473827 [06:24:08 -74143.781885] Model parameter optimization (eps = 0.100000) [06:24:23] [worker #0] ML tree search #16, logLikelihood: -74143.516025 [06:44:38] [worker #3] ML tree search #19, logLikelihood: -74155.764490 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.230507,0.266534) (0.141340,0.619185) (0.357065,0.774609) (0.271089,2.119087) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -74132.443292 AIC score: 152274.886583 / AICc score: 8196334.886583 / BIC score: 159236.789284 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=238). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/O95972/3_mltree/O95972.raxml.log Analysis started: 23-Jun-2021 01:10:14 / finished: 23-Jun-2021 07:54:53 Elapsed time: 24278.971 seconds