RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 14:11:41 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/2_msa/O95970_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/3_mltree/O95970.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622632301 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/2_msa/O95970_nogap_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 557 sites WARNING: Sequences tr_B4QGZ8_B4QGZ8_DROSI_7240 and sp_P24014_SLIT_DROME_7227 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and sp_P0CC10_LRC4B_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_D3ZXT1_D3ZXT1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A1U8CES9_A0A1U8CES9_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z0B9_M3Z0B9_MUSPF_9669 and tr_A0A2Y9JD54_A0A2Y9JD54_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G1TE00_G1TE00_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_E2REC5_E2REC5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_I3MZI2_I3MZI2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_H0WIA0_H0WIA0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G3SXT6_G3SXT6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_L5KYH0_L5KYH0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_M3WQ26_M3WQ26_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U3W956_A0A2U3W956_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U3XA41_A0A2U3XA41_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2Y9JR28_A0A2Y9JR28_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A384CXS0_A0A384CXS0_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2U3WU36_A0A2U3WU36_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_G3QIJ9_G3QIJ9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and sp_O95970_LGI1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_F7GS70_F7GS70_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_G7PDL1_G7PDL1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2I3MHY1_A0A2I3MHY1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A0D9R1M8_A0A0D9R1M8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2K6CQR1_A0A2K6CQR1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2K6A3M4_A0A2K6A3M4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QEW7_G3QEW7_GORGO_9595 and sp_Q1EGL0_LGI3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QEW7_G3QEW7_GORGO_9595 and tr_A0A2R9BDE6_A0A2R9BDE6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2J8WFS6_A0A2J8WFS6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2J8LHU0_A0A2J8LHU0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and sp_Q9HCJ2_LRC4C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_F6T8E0_F6T8E0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_G7PQD6_G7PQD6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A096MRD0_A0A096MRD0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A0D9SCY3_A0A0D9SCY3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2K5L2M8_A0A2K5L2M8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2K6AXG9_A0A2K6AXG9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2K5XNX9_A0A2K5XNX9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2R8Z8N1_A0A2R8Z8N1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S4D7_G3S4D7_GORGO_9595 and tr_H2PD15_H2PD15_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3S4D7_G3S4D7_GORGO_9595 and sp_Q1EGL1_LGI2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S4D7_G3S4D7_GORGO_9595 and sp_Q8N0V4_LGI2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_F6SUY7_F6SUY7_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_G7PH00_G7PH00_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_A0A096MYT7_A0A096MYT7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_A0A0D9SBF4_A0A0D9SBF4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_A0A2K5L1A1_A0A2K5L1A1_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_A0A2K6ASW6_A0A2K6ASW6_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2P127_H2P127_PONAB_9601 and tr_A0A2K5XWH9_A0A2K5XWH9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1NRU8_G1NRU8_MELGA_9103 and tr_A0A226MZ26_A0A226MZ26_CALSU_9009 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and tr_A0A2I2V1N8_A0A2I2V1N8_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_F7DUX8_F7DUX8_HORSE_9796 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_D2GWR2_D2GWR2_AILME_9646 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_L5KR26_L5KR26_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_A0A2U3YUV5_A0A2U3YUV5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_A0A2Y9FEL4_A0A2Y9FEL4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_A0A384DAI9_A0A384DAI9_URSMA_29073 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_A0A383ZQ82_A0A383ZQ82_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3S1G1_A0A2I3S1G1_PANTR_9598 and sp_P40197_GPV_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QG17_H2QG17_PANTR_9598 and tr_A0A2R9AUI5_A0A2R9AUI5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QGY2_H2QGY2_PANTR_9598 and sp_Q9NT99_LRC4B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QGY2_H2QGY2_PANTR_9598 and tr_A0A2R8ZF23_A0A2R8ZF23_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QVB4_H2QVB4_PANTR_9598 and tr_A0A2R9A6Z7_A0A2R9A6Z7_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6YUN2_F6YUN2_HORSE_9796 and tr_F1SHH6_F1SHH6_PIG_9823 are exactly identical! WARNING: Sequences tr_F6YUN2_F6YUN2_HORSE_9796 and tr_D2HRR2_D2HRR2_AILME_9646 are exactly identical! WARNING: Sequences tr_W5PLP9_W5PLP9_SHEEP_9940 and tr_F1MXH5_F1MXH5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M4AZ32_M4AZ32_XIPMA_8083 and tr_A0A087YRP5_A0A087YRP5_POEFO_48698 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_G5C8J0_G5C8J0_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A2Y9D8Z3_A0A2Y9D8Z3_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9HBW1_LRRC4_HUMAN_9606 and tr_F6Q3P7_F6Q3P7_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9HBW1_LRRC4_HUMAN_9606 and tr_A0A0D9SCQ8_A0A0D9SCQ8_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9NZU0_FLRT3_HUMAN_9606 and tr_A0A2R8ZD86_A0A2R8ZD86_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5Q408_A0A1D5Q408_MACMU_9544 and tr_A0A2I3M0P6_A0A2I3M0P6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q408_A0A1D5Q408_MACMU_9544 and tr_A0A2K5NYV6_A0A2K5NYV6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GT29_F7GT29_MACMU_9544 and tr_G7PVK4_G7PVK4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H0A3_F7H0A3_MACMU_9544 and tr_A0A2K6BPY9_A0A2K6BPY9_MACNE_9545 are exactly identical! WARNING: Sequences tr_D2H3C7_D2H3C7_AILME_9646 and tr_A0A384CJ90_A0A384CJ90_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A096NAN0_A0A096NAN0_PAPAN_9555 and tr_A0A2K5P6S7_A0A2K5P6S7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NAN0_A0A096NAN0_PAPAN_9555 and tr_A0A2K6E6G6_A0A2K6E6G6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0A0MVU1_A0A0A0MVU1_PAPAN_9555 and tr_A0A2K5KY06_A0A2K5KY06_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0A0MVU1_A0A0A0MVU1_PAPAN_9555 and tr_A0A2K5XDC3_A0A2K5XDC3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0A0MVU1_A0A0A0MVU1_PAPAN_9555 and tr_A0A2Y9P997_A0A2Y9P997_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I0LV52_A0A2I0LV52_COLLI_8932 and tr_A0A1V4KJ25_A0A1V4KJ25_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3GY85_A0A1S3GY85_LINUN_7574 and tr_A0A1S3H030_A0A1S3H030_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3HFI8_A0A1S3HFI8_LINUN_7574 and tr_A0A1S3HFM5_A0A1S3HFM5_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3HFI8_A0A1S3HFI8_LINUN_7574 and tr_A0A1S3HIK5_A0A1S3HIK5_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3KPH7_A0A1S3KPH7_SALSA_8030 and tr_A0A060YTF4_A0A060YTF4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SFS3_A0A1S3SFS3_SALSA_8030 and tr_A0A060YTV5_A0A060YTV5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MWM1_A0A226MWM1_CALSU_9009 and tr_A0A226P1M0_A0A226P1M0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NEZ6_A0A226NEZ6_CALSU_9009 and tr_A0A226PAG5_A0A226PAG5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5KWA4_A0A2K5KWA4_CERAT_9531 and tr_A0A2K5XV41_A0A2K5XV41_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4CF65_A0A2U4CF65_TURTR_9739 and tr_A0A2Y9P7K7_A0A2Y9P7K7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CF65_A0A2U4CF65_TURTR_9739 and tr_A0A384A1A6_A0A384A1A6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9N0W3_A0A2Y9N0W3_DELLE_9749 and tr_A0A384AJM2_A0A384AJM2_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 93 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970.raxml.reduced.phy Alignment comprises 1 partitions and 557 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 557 Gaps: 28.26 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/3_mltree/O95970.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 140 / 11200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -161719.048644 [00:00:00 -161719.048644] Initial branch length optimization [00:00:01 -149913.986359] Model parameter optimization (eps = 0.100000) [00:01:06] Tree #1, final logLikelihood: -149466.851034 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.129561,0.508670) (0.101133,0.460270) (0.522843,0.864309) (0.246464,1.767604) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O95970/4_raxmlng_ancestral/O95970.raxml.log Analysis started: 02-Jun-2021 14:11:41 / finished: 02-Jun-2021 14:12:53 Elapsed time: 72.066 seconds