RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 04-Jul-2021 16:27:16 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/2_msa/O95905_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905 --seed 2 --threads 7 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/2_msa/O95905_trimmed_msa.fasta
[00:00:00] Loaded alignment with 586 taxa and 702 sites

WARNING: Sequences tr_A0A0E1S029_A0A0E1S029_COCIM_246410 and tr_A0A0J6Y5G4_A0A0J6Y5G4_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B8MZP6_B8MZP6_ASPFN_332952 and tr_A0A1S9DUJ3_A0A1S9DUJ3_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A179U928_A0A179U928_BLAGS_559298 and tr_C5GXE4_C5GXE4_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_I1QJ45_I1QJ45_ORYGL_4538 and tr_A0A0D3H0V3_A0A0D3H0V3_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_G3Y5R1_G3Y5R1_ASPNA_380704 and tr_A0A319AN75_A0A319AN75_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_A0A0A1N2Y5_A0A0A1N2Y5_9FUNG_58291 and tr_A0A367JDJ4_A0A367JDJ4_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A100IKZ3_A0A100IKZ3_ASPNG_5061 and tr_A0A1L9N397_A0A1L9N397_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_A0A1S3YF10_A0A1S3YF10_TOBAC_4097 and tr_A0A1U7Y075_A0A1U7Y075_NICSY_4096 are exactly identical!
WARNING: Duplicate sequences found: 8

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905.raxml.reduced.phy

Alignment comprises 1 partitions and 702 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 702 / 702
Gaps: 20.81 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 586 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 101 / 8080
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -663581.114017] Initial branch length optimization
[00:00:02 -567843.566754] Model parameter optimization (eps = 10.000000)
[00:00:18 -565104.738558] AUTODETECT spr round 1 (radius: 5)
[00:01:03 -418271.529987] AUTODETECT spr round 2 (radius: 10)
[00:01:51 -333281.993732] AUTODETECT spr round 3 (radius: 15)
[00:02:45 -299349.277403] AUTODETECT spr round 4 (radius: 20)
[00:03:49 -282923.806633] AUTODETECT spr round 5 (radius: 25)
[00:05:08 -281757.347641] SPR radius for FAST iterations: 25 (autodetect)
[00:05:08 -281757.347641] Model parameter optimization (eps = 3.000000)
[00:05:17 -281732.527739] FAST spr round 1 (radius: 25)
[00:06:20 -253222.573514] FAST spr round 2 (radius: 25)
[00:07:09 -252189.015446] FAST spr round 3 (radius: 25)
[00:07:52 -252136.487495] FAST spr round 4 (radius: 25)
[00:08:31 -252122.428620] FAST spr round 5 (radius: 25)
[00:09:07 -252122.428555] Model parameter optimization (eps = 1.000000)
[00:09:15 -252113.363533] SLOW spr round 1 (radius: 5)
[00:10:12 -252066.544286] SLOW spr round 2 (radius: 5)
[00:11:04 -252066.357272] SLOW spr round 3 (radius: 5)
[00:11:55 -252066.357182] SLOW spr round 4 (radius: 10)
[00:12:49 -252065.720002] SLOW spr round 5 (radius: 5)
[00:13:55 -252065.718971] SLOW spr round 6 (radius: 10)
[00:14:56 -252065.718430] SLOW spr round 7 (radius: 15)
[00:16:21 -252062.852170] SLOW spr round 8 (radius: 5)
[00:17:31 -252062.851662] SLOW spr round 9 (radius: 10)
[00:18:36 -252060.601882] SLOW spr round 10 (radius: 5)
[00:19:40 -252060.600929] SLOW spr round 11 (radius: 10)
[00:20:40 -252060.600340] SLOW spr round 12 (radius: 15)
[00:22:06 -252060.599949] SLOW spr round 13 (radius: 20)
[00:24:07 -252060.599685] SLOW spr round 14 (radius: 25)
[00:26:28 -252060.599505] Model parameter optimization (eps = 0.100000)

[00:26:31] ML tree search #1, logLikelihood: -252060.564860

[00:26:31 -666475.630348] Initial branch length optimization
[00:26:34 -573655.823250] Model parameter optimization (eps = 10.000000)
[00:26:56 -570906.956295] AUTODETECT spr round 1 (radius: 5)
[00:27:41 -419862.329635] AUTODETECT spr round 2 (radius: 10)
[00:28:31 -324518.149579] AUTODETECT spr round 3 (radius: 15)
[00:29:26 -299627.792977] AUTODETECT spr round 4 (radius: 20)
[00:30:31 -284617.251922] AUTODETECT spr round 5 (radius: 25)
[00:31:40 -279592.322932] SPR radius for FAST iterations: 25 (autodetect)
[00:31:40 -279592.322932] Model parameter optimization (eps = 3.000000)
[00:31:52 -279540.211989] FAST spr round 1 (radius: 25)
[00:33:00 -253172.151792] FAST spr round 2 (radius: 25)
[00:33:51 -252226.241012] FAST spr round 3 (radius: 25)
[00:34:38 -252149.112949] FAST spr round 4 (radius: 25)
[00:35:16 -252142.556946] FAST spr round 5 (radius: 25)
[00:35:52 -252142.556938] Model parameter optimization (eps = 1.000000)
[00:35:59 -252139.700713] SLOW spr round 1 (radius: 5)
[00:37:01 -252087.526746] SLOW spr round 2 (radius: 5)
[00:37:59 -252077.545794] SLOW spr round 3 (radius: 5)
[00:38:54 -252068.274004] SLOW spr round 4 (radius: 5)
[00:39:48 -252068.273286] SLOW spr round 5 (radius: 10)
[00:40:45 -252068.273219] SLOW spr round 6 (radius: 15)
[00:42:30 -252068.273202] SLOW spr round 7 (radius: 20)
[00:44:46 -252068.273191] SLOW spr round 8 (radius: 25)
[00:47:21 -252068.273183] Model parameter optimization (eps = 0.100000)

[00:47:25] ML tree search #2, logLikelihood: -252068.219454

[00:47:25 -668692.359214] Initial branch length optimization
[00:47:27 -574651.209484] Model parameter optimization (eps = 10.000000)
[00:47:46 -571993.803419] AUTODETECT spr round 1 (radius: 5)
[00:48:32 -433666.622142] AUTODETECT spr round 2 (radius: 10)
[00:49:21 -336956.218834] AUTODETECT spr round 3 (radius: 15)
[00:50:20 -291381.249463] AUTODETECT spr round 4 (radius: 20)
[00:51:23 -278689.476439] AUTODETECT spr round 5 (radius: 25)
[00:52:42 -278054.631359] SPR radius for FAST iterations: 25 (autodetect)
[00:52:42 -278054.631359] Model parameter optimization (eps = 3.000000)
[00:52:52 -277966.806409] FAST spr round 1 (radius: 25)
[00:53:57 -253016.549252] FAST spr round 2 (radius: 25)
[00:54:52 -252210.924335] FAST spr round 3 (radius: 25)
[00:55:40 -252135.435740] FAST spr round 4 (radius: 25)
[00:56:23 -252112.296499] FAST spr round 5 (radius: 25)
[00:57:02 -252107.700606] FAST spr round 6 (radius: 25)
[00:57:39 -252107.700586] Model parameter optimization (eps = 1.000000)
[00:57:46 -252106.468795] SLOW spr round 1 (radius: 5)
[00:58:42 -252072.121302] SLOW spr round 2 (radius: 5)
[00:59:35 -252072.093438] SLOW spr round 3 (radius: 10)
[01:00:30 -252072.092980] SLOW spr round 4 (radius: 15)
[01:02:03 -252072.041492] SLOW spr round 5 (radius: 20)
[01:04:11 -252072.041037] SLOW spr round 6 (radius: 25)
[01:07:27 -252072.040968] Model parameter optimization (eps = 0.100000)

[01:07:33] ML tree search #3, logLikelihood: -252072.002683

[01:07:33 -663615.673563] Initial branch length optimization
[01:07:36 -570355.431064] Model parameter optimization (eps = 10.000000)
[01:07:55 -567671.154037] AUTODETECT spr round 1 (radius: 5)
[01:08:39 -410450.854465] AUTODETECT spr round 2 (radius: 10)
[01:09:26 -335443.006388] AUTODETECT spr round 3 (radius: 15)
[01:10:18 -305896.535045] AUTODETECT spr round 4 (radius: 20)
[01:11:21 -285208.669974] AUTODETECT spr round 5 (radius: 25)
[01:12:30 -279722.769874] SPR radius for FAST iterations: 25 (autodetect)
[01:12:30 -279722.769874] Model parameter optimization (eps = 3.000000)
[01:12:44 -279650.927753] FAST spr round 1 (radius: 25)
[01:13:47 -253245.137961] FAST spr round 2 (radius: 25)
[01:14:40 -252320.101942] FAST spr round 3 (radius: 25)
[01:15:40 -252146.835275] FAST spr round 4 (radius: 25)
[01:16:57 -252141.222537] FAST spr round 5 (radius: 25)
[01:18:10 -252139.444569] FAST spr round 6 (radius: 25)
[01:19:22 -252134.827659] FAST spr round 7 (radius: 25)
[01:20:05 -252126.084322] FAST spr round 8 (radius: 25)
[01:20:41 -252126.083166] Model parameter optimization (eps = 1.000000)
[01:20:47 -252122.221367] SLOW spr round 1 (radius: 5)
[01:21:43 -252079.608738] SLOW spr round 2 (radius: 5)
[01:22:37 -252076.545413] SLOW spr round 3 (radius: 5)
[01:23:29 -252075.911266] SLOW spr round 4 (radius: 5)
[01:24:21 -252075.911182] SLOW spr round 5 (radius: 10)
[01:25:18 -252074.834820] SLOW spr round 6 (radius: 5)
[01:26:24 -252074.834752] SLOW spr round 7 (radius: 10)
[01:27:27 -252074.834734] SLOW spr round 8 (radius: 15)
[01:28:55 -252074.834719] SLOW spr round 9 (radius: 20)
[01:30:56 -252074.834707] SLOW spr round 10 (radius: 25)
[01:33:15 -252074.834695] Model parameter optimization (eps = 0.100000)

[01:33:21] ML tree search #4, logLikelihood: -252074.616887

[01:33:21 -661578.692958] Initial branch length optimization
[01:33:23 -569732.923958] Model parameter optimization (eps = 10.000000)
[01:33:38 -567018.779548] AUTODETECT spr round 1 (radius: 5)
[01:34:23 -412868.904589] AUTODETECT spr round 2 (radius: 10)
[01:35:11 -325082.816393] AUTODETECT spr round 3 (radius: 15)
[01:36:06 -288491.371031] AUTODETECT spr round 4 (radius: 20)
[01:37:09 -276113.894135] AUTODETECT spr round 5 (radius: 25)
[01:38:16 -275503.791629] SPR radius for FAST iterations: 25 (autodetect)
[01:38:16 -275503.791629] Model parameter optimization (eps = 3.000000)
[01:38:28 -275436.968726] FAST spr round 1 (radius: 25)
[01:39:32 -252993.029666] FAST spr round 2 (radius: 25)
[01:40:23 -252186.757455] FAST spr round 3 (radius: 25)
[01:41:06 -252166.558749] FAST spr round 4 (radius: 25)
[01:41:44 -252160.399221] FAST spr round 5 (radius: 25)
[01:42:20 -252160.380859] Model parameter optimization (eps = 1.000000)
[01:42:30 -252157.244971] SLOW spr round 1 (radius: 5)
[01:43:27 -252082.877190] SLOW spr round 2 (radius: 5)
[01:44:21 -252074.164046] SLOW spr round 3 (radius: 5)
[01:45:13 -252071.830004] SLOW spr round 4 (radius: 5)
[01:46:05 -252071.829770] SLOW spr round 5 (radius: 10)
[01:47:00 -252071.829621] SLOW spr round 6 (radius: 15)
[01:48:40 -252071.749816] SLOW spr round 7 (radius: 20)
[01:50:53 -252071.749165] SLOW spr round 8 (radius: 25)
[01:53:31 -252071.749145] Model parameter optimization (eps = 0.100000)

[01:53:36] ML tree search #5, logLikelihood: -252071.562808

[01:53:36 -668898.107937] Initial branch length optimization
[01:53:38 -573708.542793] Model parameter optimization (eps = 10.000000)
[01:53:53 -570892.132621] AUTODETECT spr round 1 (radius: 5)
[01:54:37 -420024.243098] AUTODETECT spr round 2 (radius: 10)
[01:55:23 -338143.271779] AUTODETECT spr round 3 (radius: 15)
[01:56:20 -300012.196537] AUTODETECT spr round 4 (radius: 20)
[01:57:26 -286534.887198] AUTODETECT spr round 5 (radius: 25)
[01:58:50 -284983.200164] SPR radius for FAST iterations: 25 (autodetect)
[01:58:50 -284983.200164] Model parameter optimization (eps = 3.000000)
[01:59:01 -284944.633427] FAST spr round 1 (radius: 25)
[02:00:09 -253337.694710] FAST spr round 2 (radius: 25)
[02:01:00 -252276.957329] FAST spr round 3 (radius: 25)
[02:01:48 -252189.718754] FAST spr round 4 (radius: 25)
[02:02:26 -252169.177755] FAST spr round 5 (radius: 25)
[02:03:03 -252169.169878] Model parameter optimization (eps = 1.000000)
[02:03:12 -252163.683628] SLOW spr round 1 (radius: 5)
[02:04:10 -252089.751963] SLOW spr round 2 (radius: 5)
[02:05:06 -252084.316805] SLOW spr round 3 (radius: 5)
[02:05:59 -252076.412935] SLOW spr round 4 (radius: 5)
[02:06:51 -252075.855701] SLOW spr round 5 (radius: 5)
[02:07:42 -252075.855445] SLOW spr round 6 (radius: 10)
[02:08:41 -252075.855430] SLOW spr round 7 (radius: 15)
[02:10:19 -252075.855416] SLOW spr round 8 (radius: 20)
[02:12:28 -252075.855402] SLOW spr round 9 (radius: 25)
[02:15:04 -252075.855388] Model parameter optimization (eps = 0.100000)

[02:15:13] ML tree search #6, logLikelihood: -252073.140293

[02:15:13 -662211.913351] Initial branch length optimization
[02:15:17 -570587.735997] Model parameter optimization (eps = 10.000000)
[02:15:43 -567937.354261] AUTODETECT spr round 1 (radius: 5)
[02:16:28 -419899.636103] AUTODETECT spr round 2 (radius: 10)
[02:17:17 -322891.238012] AUTODETECT spr round 3 (radius: 15)
[02:18:13 -283322.498954] AUTODETECT spr round 4 (radius: 20)
[02:19:32 -273545.285625] AUTODETECT spr round 5 (radius: 25)
[02:20:52 -272914.192552] SPR radius for FAST iterations: 25 (autodetect)
[02:20:52 -272914.192552] Model parameter optimization (eps = 3.000000)
[02:21:01 -272853.966383] FAST spr round 1 (radius: 25)
[02:22:04 -253085.747227] FAST spr round 2 (radius: 25)
[02:22:53 -252228.013335] FAST spr round 3 (radius: 25)
[02:23:37 -252177.544351] FAST spr round 4 (radius: 25)
[02:24:15 -252170.716138] FAST spr round 5 (radius: 25)
[02:24:52 -252170.715851] Model parameter optimization (eps = 1.000000)
[02:25:00 -252167.040333] SLOW spr round 1 (radius: 5)
[02:25:59 -252085.200011] SLOW spr round 2 (radius: 5)
[02:26:56 -252074.120338] SLOW spr round 3 (radius: 5)
[02:27:49 -252071.848726] SLOW spr round 4 (radius: 5)
[02:28:39 -252071.848667] SLOW spr round 5 (radius: 10)
[02:29:33 -252071.848611] SLOW spr round 6 (radius: 15)
[02:31:06 -252071.848556] SLOW spr round 7 (radius: 20)
[02:33:06 -252071.848501] SLOW spr round 8 (radius: 25)
[02:35:28 -252071.848446] Model parameter optimization (eps = 0.100000)

[02:35:34] ML tree search #7, logLikelihood: -252071.556351

[02:35:34 -664760.629066] Initial branch length optimization
[02:35:37 -571082.248016] Model parameter optimization (eps = 10.000000)
[02:36:00 -568466.236911] AUTODETECT spr round 1 (radius: 5)
[02:36:45 -415982.776873] AUTODETECT spr round 2 (radius: 10)
[02:37:33 -337787.736389] AUTODETECT spr round 3 (radius: 15)
[02:38:29 -294625.404524] AUTODETECT spr round 4 (radius: 20)
[02:39:29 -282234.918188] AUTODETECT spr round 5 (radius: 25)
[02:40:40 -281605.693233] SPR radius for FAST iterations: 25 (autodetect)
[02:40:40 -281605.693233] Model parameter optimization (eps = 3.000000)
[02:40:52 -281506.371295] FAST spr round 1 (radius: 25)
[02:41:55 -253196.871464] FAST spr round 2 (radius: 25)
[02:42:46 -252216.550188] FAST spr round 3 (radius: 25)
[02:43:30 -252160.854345] FAST spr round 4 (radius: 25)
[02:44:07 -252160.541263] FAST spr round 5 (radius: 25)
[02:44:42 -252160.539861] Model parameter optimization (eps = 1.000000)
[02:44:48 -252159.669875] SLOW spr round 1 (radius: 5)
[02:45:46 -252088.108004] SLOW spr round 2 (radius: 5)
[02:46:41 -252080.394103] SLOW spr round 3 (radius: 5)
[02:47:33 -252080.393945] SLOW spr round 4 (radius: 10)
[02:48:29 -252080.393807] SLOW spr round 5 (radius: 15)
[02:50:08 -252080.161408] SLOW spr round 6 (radius: 5)
[02:51:17 -252080.146550] SLOW spr round 7 (radius: 10)
[02:52:22 -252080.145355] SLOW spr round 8 (radius: 15)
[02:53:49 -252080.144562] SLOW spr round 9 (radius: 20)
[02:55:52 -252080.144033] SLOW spr round 10 (radius: 25)
[02:58:19 -252080.143679] Model parameter optimization (eps = 0.100000)

[02:58:30] ML tree search #8, logLikelihood: -252078.953648

[02:58:30 -664798.982285] Initial branch length optimization
[02:58:33 -568706.224675] Model parameter optimization (eps = 10.000000)
[02:58:50 -566080.507791] AUTODETECT spr round 1 (radius: 5)
[02:59:34 -422099.494370] AUTODETECT spr round 2 (radius: 10)
[03:00:22 -331859.228497] AUTODETECT spr round 3 (radius: 15)
[03:01:16 -291336.980030] AUTODETECT spr round 4 (radius: 20)
[03:02:21 -279095.038177] AUTODETECT spr round 5 (radius: 25)
[03:03:30 -278917.816656] SPR radius for FAST iterations: 25 (autodetect)
[03:03:30 -278917.816656] Model parameter optimization (eps = 3.000000)
[03:03:41 -278845.197601] FAST spr round 1 (radius: 25)
[03:05:25 -253444.288616] FAST spr round 2 (radius: 25)
[03:06:28 -252203.768594] FAST spr round 3 (radius: 25)
[03:07:15 -252139.230120] FAST spr round 4 (radius: 25)
[03:07:57 -252135.659078] FAST spr round 5 (radius: 25)
[03:08:38 -252132.774471] FAST spr round 6 (radius: 25)
[03:09:15 -252132.774365] Model parameter optimization (eps = 1.000000)
[03:09:24 -252129.575840] SLOW spr round 1 (radius: 5)
[03:10:21 -252073.460108] SLOW spr round 2 (radius: 5)
[03:11:14 -252072.846653] SLOW spr round 3 (radius: 5)
[03:12:05 -252072.846077] SLOW spr round 4 (radius: 10)
[03:13:02 -252072.059054] SLOW spr round 5 (radius: 5)
[03:14:08 -252069.359495] SLOW spr round 6 (radius: 5)
[03:15:06 -252069.358458] SLOW spr round 7 (radius: 10)
[03:16:03 -252069.358419] SLOW spr round 8 (radius: 15)
[03:17:37 -252069.358398] SLOW spr round 9 (radius: 20)
[03:19:45 -252069.358378] SLOW spr round 10 (radius: 25)
[03:22:16 -252069.358359] Model parameter optimization (eps = 0.100000)

[03:22:22] ML tree search #9, logLikelihood: -252069.158709

[03:22:22 -661820.002365] Initial branch length optimization
[03:22:25 -570667.602854] Model parameter optimization (eps = 10.000000)
[03:22:46 -568023.550319] AUTODETECT spr round 1 (radius: 5)
[03:23:31 -418627.592323] AUTODETECT spr round 2 (radius: 10)
[03:24:19 -331222.617217] AUTODETECT spr round 3 (radius: 15)
[03:25:12 -293557.467898] AUTODETECT spr round 4 (radius: 20)
[03:26:20 -281747.892109] AUTODETECT spr round 5 (radius: 25)
[03:27:32 -279889.093753] SPR radius for FAST iterations: 25 (autodetect)
[03:27:32 -279889.093753] Model parameter optimization (eps = 3.000000)
[03:27:43 -279779.009852] FAST spr round 1 (radius: 25)
[03:28:45 -253866.937291] FAST spr round 2 (radius: 25)
[03:29:34 -252227.691073] FAST spr round 3 (radius: 25)
[03:30:18 -252145.649783] FAST spr round 4 (radius: 25)
[03:30:55 -252140.157652] FAST spr round 5 (radius: 25)
[03:31:32 -252134.337641] FAST spr round 6 (radius: 25)
[03:32:08 -252134.336316] Model parameter optimization (eps = 1.000000)
[03:32:17 -252128.431025] SLOW spr round 1 (radius: 5)
[03:33:13 -252066.450531] SLOW spr round 2 (radius: 5)
[03:34:06 -252061.251990] SLOW spr round 3 (radius: 5)
[03:34:57 -252061.251552] SLOW spr round 4 (radius: 10)
[03:35:51 -252061.251483] SLOW spr round 5 (radius: 15)
[03:37:24 -252061.251441] SLOW spr round 6 (radius: 20)
[03:39:23 -252061.251409] SLOW spr round 7 (radius: 25)
[03:41:43 -252061.251383] Model parameter optimization (eps = 0.100000)

[03:41:47] ML tree search #10, logLikelihood: -252061.030051

[03:41:47 -661619.534646] Initial branch length optimization
[03:41:50 -568417.953391] Model parameter optimization (eps = 10.000000)
[03:42:04 -565664.045731] AUTODETECT spr round 1 (radius: 5)
[03:42:48 -418192.314677] AUTODETECT spr round 2 (radius: 10)
[03:43:36 -328265.459910] AUTODETECT spr round 3 (radius: 15)
[03:44:31 -281426.992658] AUTODETECT spr round 4 (radius: 20)
[03:45:35 -277003.373706] AUTODETECT spr round 5 (radius: 25)
[03:46:46 -276997.488027] SPR radius for FAST iterations: 25 (autodetect)
[03:46:46 -276997.488027] Model parameter optimization (eps = 3.000000)
[03:46:57 -276943.376797] FAST spr round 1 (radius: 25)
[03:47:59 -253234.764142] FAST spr round 2 (radius: 25)
[03:48:48 -252221.808123] FAST spr round 3 (radius: 25)
[03:49:30 -252183.392436] FAST spr round 4 (radius: 25)
[03:50:07 -252183.391775] Model parameter optimization (eps = 1.000000)
[03:50:15 -252180.868160] SLOW spr round 1 (radius: 5)
[03:51:12 -252109.708376] SLOW spr round 2 (radius: 5)
[03:52:07 -252088.214213] SLOW spr round 3 (radius: 5)
[03:52:59 -252085.151284] SLOW spr round 4 (radius: 5)
[03:53:51 -252083.720933] SLOW spr round 5 (radius: 5)
[03:54:42 -252083.720390] SLOW spr round 6 (radius: 10)
[03:55:38 -252080.413563] SLOW spr round 7 (radius: 5)
[03:56:43 -252080.411942] SLOW spr round 8 (radius: 10)
[03:57:47 -252080.411144] SLOW spr round 9 (radius: 15)
[03:59:15 -252079.461331] SLOW spr round 10 (radius: 5)
[04:00:24 -252079.415852] SLOW spr round 11 (radius: 10)
[04:01:32 -252079.415037] SLOW spr round 12 (radius: 15)
[04:02:58 -252079.414503] SLOW spr round 13 (radius: 20)
[04:05:04 -252079.414152] SLOW spr round 14 (radius: 25)
[04:07:34 -252079.413919] Model parameter optimization (eps = 0.100000)

[04:07:39] ML tree search #11, logLikelihood: -252079.224269

[04:07:39 -659741.409077] Initial branch length optimization
[04:07:41 -567102.867252] Model parameter optimization (eps = 10.000000)
[04:08:01 -564355.965291] AUTODETECT spr round 1 (radius: 5)
[04:08:45 -416834.282662] AUTODETECT spr round 2 (radius: 10)
[04:09:34 -317041.347223] AUTODETECT spr round 3 (radius: 15)
[04:10:28 -290335.763820] AUTODETECT spr round 4 (radius: 20)
[04:11:34 -276816.458631] AUTODETECT spr round 5 (radius: 25)
[04:12:39 -275449.677733] SPR radius for FAST iterations: 25 (autodetect)
[04:12:39 -275449.677733] Model parameter optimization (eps = 3.000000)
[04:12:54 -275374.355696] FAST spr round 1 (radius: 25)
[04:13:55 -253331.628471] FAST spr round 2 (radius: 25)
[04:14:44 -252257.440018] FAST spr round 3 (radius: 25)
[04:15:28 -252158.287247] FAST spr round 4 (radius: 25)
[04:16:05 -252150.041648] FAST spr round 5 (radius: 25)
[04:16:41 -252150.041352] Model parameter optimization (eps = 1.000000)
[04:16:50 -252141.701078] SLOW spr round 1 (radius: 5)
[04:17:47 -252078.867596] SLOW spr round 2 (radius: 5)
[04:18:41 -252072.959445] SLOW spr round 3 (radius: 5)
[04:19:32 -252072.301493] SLOW spr round 4 (radius: 5)
[04:20:23 -252072.301307] SLOW spr round 5 (radius: 10)
[04:21:17 -252072.301149] SLOW spr round 6 (radius: 15)
[04:22:52 -252071.613383] SLOW spr round 7 (radius: 5)
[04:24:01 -252071.613106] SLOW spr round 8 (radius: 10)
[04:25:06 -252071.613069] SLOW spr round 9 (radius: 15)
[04:26:34 -252071.613040] SLOW spr round 10 (radius: 20)
[04:28:40 -252071.613015] SLOW spr round 11 (radius: 25)
[04:31:14 -252071.612991] Model parameter optimization (eps = 0.100000)

[04:31:19] ML tree search #12, logLikelihood: -252071.269907

[04:31:19 -666505.150370] Initial branch length optimization
[04:31:22 -572900.510426] Model parameter optimization (eps = 10.000000)
[04:31:44 -570122.169563] AUTODETECT spr round 1 (radius: 5)
[04:32:28 -415659.277191] AUTODETECT spr round 2 (radius: 10)
[04:33:15 -332616.921680] AUTODETECT spr round 3 (radius: 15)
[04:34:09 -287374.456293] AUTODETECT spr round 4 (radius: 20)
[04:35:11 -276385.097702] AUTODETECT spr round 5 (radius: 25)
[04:36:16 -275792.413470] SPR radius for FAST iterations: 25 (autodetect)
[04:36:16 -275792.413470] Model parameter optimization (eps = 3.000000)
[04:36:25 -275747.927675] FAST spr round 1 (radius: 25)
[04:37:30 -252740.846171] FAST spr round 2 (radius: 25)
[04:38:19 -252198.285712] FAST spr round 3 (radius: 25)
[04:39:02 -252154.128838] FAST spr round 4 (radius: 25)
[04:39:39 -252154.126443] Model parameter optimization (eps = 1.000000)
[04:39:47 -252150.267678] SLOW spr round 1 (radius: 5)
[04:40:46 -252104.792470] SLOW spr round 2 (radius: 5)
[04:41:41 -252089.648150] SLOW spr round 3 (radius: 5)
[04:42:33 -252087.548098] SLOW spr round 4 (radius: 5)
[04:43:25 -252084.612471] SLOW spr round 5 (radius: 5)
[04:44:16 -252084.612243] SLOW spr round 6 (radius: 10)
[04:45:11 -252079.969639] SLOW spr round 7 (radius: 5)
[04:46:19 -252073.150501] SLOW spr round 8 (radius: 5)
[04:47:16 -252073.150360] SLOW spr round 9 (radius: 10)
[04:48:13 -252073.150263] SLOW spr round 10 (radius: 15)
[04:49:47 -252072.485147] SLOW spr round 11 (radius: 5)
[04:50:56 -252072.457533] SLOW spr round 12 (radius: 10)
[04:52:02 -252072.456560] SLOW spr round 13 (radius: 15)
[04:53:30 -252072.455894] SLOW spr round 14 (radius: 20)
[04:55:36 -252072.455434] SLOW spr round 15 (radius: 25)
[04:58:06 -252072.455115] Model parameter optimization (eps = 0.100000)

[04:58:10] ML tree search #13, logLikelihood: -252072.301976

[04:58:10 -664303.031623] Initial branch length optimization
[04:58:13 -572289.798777] Model parameter optimization (eps = 10.000000)
[04:58:39 -569569.402710] AUTODETECT spr round 1 (radius: 5)
[04:59:23 -426969.857368] AUTODETECT spr round 2 (radius: 10)
[05:00:12 -329337.320834] AUTODETECT spr round 3 (radius: 15)
[05:01:09 -284238.642119] AUTODETECT spr round 4 (radius: 20)
[05:02:12 -277543.039150] AUTODETECT spr round 5 (radius: 25)
[05:03:21 -277025.813368] SPR radius for FAST iterations: 25 (autodetect)
[05:03:21 -277025.813368] Model parameter optimization (eps = 3.000000)
[05:03:31 -276977.953821] FAST spr round 1 (radius: 25)
[05:04:38 -253143.124494] FAST spr round 2 (radius: 25)
[05:05:31 -252159.874793] FAST spr round 3 (radius: 25)
[05:06:13 -252125.394104] FAST spr round 4 (radius: 25)
[05:06:50 -252125.392342] Model parameter optimization (eps = 1.000000)
[05:06:55 -252124.558696] SLOW spr round 1 (radius: 5)
[05:07:55 -252073.217381] SLOW spr round 2 (radius: 5)
[05:08:49 -252065.371312] SLOW spr round 3 (radius: 5)
[05:09:40 -252065.102980] SLOW spr round 4 (radius: 5)
[05:10:31 -252065.102174] SLOW spr round 5 (radius: 10)
[05:11:26 -252063.820032] SLOW spr round 6 (radius: 5)
[05:12:32 -252063.119965] SLOW spr round 7 (radius: 5)
[05:13:28 -252063.119885] SLOW spr round 8 (radius: 10)
[05:14:26 -252063.119866] SLOW spr round 9 (radius: 15)
[05:16:00 -252063.119850] SLOW spr round 10 (radius: 20)
[05:18:08 -252063.119834] SLOW spr round 11 (radius: 25)
[05:20:40 -252063.119819] Model parameter optimization (eps = 0.100000)

[05:20:47] ML tree search #14, logLikelihood: -252063.029819

[05:20:47 -665318.275954] Initial branch length optimization
[05:20:49 -570893.651303] Model parameter optimization (eps = 10.000000)
[05:21:10 -568171.149905] AUTODETECT spr round 1 (radius: 5)
[05:21:54 -423555.179254] AUTODETECT spr round 2 (radius: 10)
[05:22:42 -335880.693479] AUTODETECT spr round 3 (radius: 15)
[05:23:34 -287852.041540] AUTODETECT spr round 4 (radius: 20)
[05:24:31 -276941.028078] AUTODETECT spr round 5 (radius: 25)
[05:25:41 -275303.274566] SPR radius for FAST iterations: 25 (autodetect)
[05:25:41 -275303.274566] Model parameter optimization (eps = 3.000000)
[05:25:52 -275227.305246] FAST spr round 1 (radius: 25)
[05:26:58 -253181.015441] FAST spr round 2 (radius: 25)
[05:27:49 -252273.073305] FAST spr round 3 (radius: 25)
[05:28:35 -252150.527245] FAST spr round 4 (radius: 25)
[05:29:17 -252138.002456] FAST spr round 5 (radius: 25)
[05:29:55 -252137.929398] Model parameter optimization (eps = 1.000000)
[05:30:01 -252137.187565] SLOW spr round 1 (radius: 5)
[05:31:01 -252080.385351] SLOW spr round 2 (radius: 5)
[05:31:54 -252073.773770] SLOW spr round 3 (radius: 5)
[05:32:46 -252073.404069] SLOW spr round 4 (radius: 5)
[05:33:37 -252073.403659] SLOW spr round 5 (radius: 10)
[05:34:33 -252067.843446] SLOW spr round 6 (radius: 5)
[05:35:40 -252062.089802] SLOW spr round 7 (radius: 5)
[05:36:38 -252061.768014] SLOW spr round 8 (radius: 5)
[05:37:32 -252061.767743] SLOW spr round 9 (radius: 10)
[05:38:28 -252061.767725] SLOW spr round 10 (radius: 15)
[05:40:04 -252061.767716] SLOW spr round 11 (radius: 20)
[05:42:09 -252061.767707] SLOW spr round 12 (radius: 25)
[05:44:37 -252061.767699] Model parameter optimization (eps = 0.100000)

[05:44:43] ML tree search #15, logLikelihood: -252060.796928

[05:44:43 -665173.371363] Initial branch length optimization
[05:44:48 -573485.518460] Model parameter optimization (eps = 10.000000)
[05:45:09 -570748.826040] AUTODETECT spr round 1 (radius: 5)
[05:45:54 -426477.950169] AUTODETECT spr round 2 (radius: 10)
[05:46:42 -340339.606876] AUTODETECT spr round 3 (radius: 15)
[05:47:38 -299763.173802] AUTODETECT spr round 4 (radius: 20)
[05:48:39 -287317.550234] AUTODETECT spr round 5 (radius: 25)
[05:49:50 -284862.789283] SPR radius for FAST iterations: 25 (autodetect)
[05:49:50 -284862.789283] Model parameter optimization (eps = 3.000000)
[05:50:01 -284775.818008] FAST spr round 1 (radius: 25)
[05:51:07 -253154.928758] FAST spr round 2 (radius: 25)
[05:52:00 -252187.140721] FAST spr round 3 (radius: 25)
[05:52:44 -252133.846278] FAST spr round 4 (radius: 25)
[05:53:21 -252132.442102] FAST spr round 5 (radius: 25)
[05:53:58 -252132.441890] Model parameter optimization (eps = 1.000000)
[05:54:04 -252130.267020] SLOW spr round 1 (radius: 5)
[05:55:04 -252080.143339] SLOW spr round 2 (radius: 5)
[05:55:58 -252075.830385] SLOW spr round 3 (radius: 5)
[05:56:51 -252075.830193] SLOW spr round 4 (radius: 10)
[05:57:49 -252075.830130] SLOW spr round 5 (radius: 15)
[05:59:30 -252075.164215] SLOW spr round 6 (radius: 5)
[06:00:40 -252074.362902] SLOW spr round 7 (radius: 5)
[06:01:39 -252074.360829] SLOW spr round 8 (radius: 10)
[06:02:39 -252074.360531] SLOW spr round 9 (radius: 15)
[06:04:12 -252074.360408] SLOW spr round 10 (radius: 20)
[06:06:26 -252074.360331] SLOW spr round 11 (radius: 25)
[06:09:04 -252074.360278] Model parameter optimization (eps = 0.100000)

[06:09:07] ML tree search #16, logLikelihood: -252074.264861

[06:09:07 -666066.266130] Initial branch length optimization
[06:09:09 -574530.077178] Model parameter optimization (eps = 10.000000)
[06:09:28 -571659.133780] AUTODETECT spr round 1 (radius: 5)
[06:10:12 -413092.028537] AUTODETECT spr round 2 (radius: 10)
[06:11:01 -330021.801507] AUTODETECT spr round 3 (radius: 15)
[06:12:03 -282169.946627] AUTODETECT spr round 4 (radius: 20)
[06:13:07 -277366.221240] AUTODETECT spr round 5 (radius: 25)
[06:14:14 -277366.171119] SPR radius for FAST iterations: 20 (autodetect)
[06:14:14 -277366.171119] Model parameter optimization (eps = 3.000000)
[06:14:25 -277307.683659] FAST spr round 1 (radius: 20)
[06:15:25 -252988.761531] FAST spr round 2 (radius: 20)
[06:16:12 -252230.854310] FAST spr round 3 (radius: 20)
[06:16:56 -252163.167447] FAST spr round 4 (radius: 20)
[06:17:36 -252154.481831] FAST spr round 5 (radius: 20)
[06:18:12 -252154.481751] Model parameter optimization (eps = 1.000000)
[06:18:17 -252152.822473] SLOW spr round 1 (radius: 5)
[06:19:16 -252090.620227] SLOW spr round 2 (radius: 5)
[06:20:08 -252090.618682] SLOW spr round 3 (radius: 10)
[06:21:03 -252090.617638] SLOW spr round 4 (radius: 15)
[06:22:37 -252090.616930] SLOW spr round 5 (radius: 20)
[06:24:40 -252090.616448] SLOW spr round 6 (radius: 25)
[06:27:07 -252090.616119] Model parameter optimization (eps = 0.100000)

[06:27:13] ML tree search #17, logLikelihood: -252090.576200

[06:27:13 -663885.386037] Initial branch length optimization
[06:27:15 -570829.910059] Model parameter optimization (eps = 10.000000)
[06:27:36 -568094.220848] AUTODETECT spr round 1 (radius: 5)
[06:28:21 -411087.796081] AUTODETECT spr round 2 (radius: 10)
[06:29:10 -310052.660604] AUTODETECT spr round 3 (radius: 15)
[06:30:07 -279667.169286] AUTODETECT spr round 4 (radius: 20)
[06:31:19 -273994.328310] AUTODETECT spr round 5 (radius: 25)
[06:32:38 -273376.597560] SPR radius for FAST iterations: 25 (autodetect)
[06:32:38 -273376.597560] Model parameter optimization (eps = 3.000000)
[06:32:47 -273330.595998] FAST spr round 1 (radius: 25)
[06:33:55 -253084.786300] FAST spr round 2 (radius: 25)
[06:34:46 -252231.933082] FAST spr round 3 (radius: 25)
[06:35:33 -252166.691262] FAST spr round 4 (radius: 25)
[06:36:14 -252144.910985] FAST spr round 5 (radius: 25)
[06:36:50 -252144.910815] Model parameter optimization (eps = 1.000000)
[06:36:57 -252142.348374] SLOW spr round 1 (radius: 5)
[06:37:56 -252083.229655] SLOW spr round 2 (radius: 5)
[06:38:50 -252076.154681] SLOW spr round 3 (radius: 5)
[06:39:42 -252071.955544] SLOW spr round 4 (radius: 5)
[06:40:34 -252071.955263] SLOW spr round 5 (radius: 10)
[06:41:28 -252070.860704] SLOW spr round 6 (radius: 5)
[06:42:34 -252070.860604] SLOW spr round 7 (radius: 10)
[06:43:36 -252070.860556] SLOW spr round 8 (radius: 15)
[06:45:01 -252070.687060] SLOW spr round 9 (radius: 5)
[06:46:10 -252070.654727] SLOW spr round 10 (radius: 10)
[06:47:15 -252070.652566] SLOW spr round 11 (radius: 15)
[06:48:39 -252070.651103] SLOW spr round 12 (radius: 20)
[06:50:38 -252070.650111] SLOW spr round 13 (radius: 25)
[06:52:56 -252070.649436] Model parameter optimization (eps = 0.100000)

[06:53:01] ML tree search #18, logLikelihood: -252070.541231

[06:53:02 -665171.159192] Initial branch length optimization
[06:53:05 -571984.100844] Model parameter optimization (eps = 10.000000)
[06:53:26 -569288.679736] AUTODETECT spr round 1 (radius: 5)
[06:54:11 -417380.156327] AUTODETECT spr round 2 (radius: 10)
[06:54:57 -339241.754371] AUTODETECT spr round 3 (radius: 15)
[06:55:52 -308297.371082] AUTODETECT spr round 4 (radius: 20)
[06:57:01 -288709.131864] AUTODETECT spr round 5 (radius: 25)
[06:58:17 -284633.999726] SPR radius for FAST iterations: 25 (autodetect)
[06:58:17 -284633.999726] Model parameter optimization (eps = 3.000000)
[06:58:26 -284601.444822] FAST spr round 1 (radius: 25)
[06:59:33 -253647.096905] FAST spr round 2 (radius: 25)
[07:00:25 -252221.031770] FAST spr round 3 (radius: 25)
[07:01:11 -252165.112285] FAST spr round 4 (radius: 25)
[07:01:50 -252157.484543] FAST spr round 5 (radius: 25)
[07:02:28 -252148.880599] FAST spr round 6 (radius: 25)
[07:03:04 -252139.826665] FAST spr round 7 (radius: 25)
[07:03:39 -252139.826380] Model parameter optimization (eps = 1.000000)
[07:03:48 -252135.323215] SLOW spr round 1 (radius: 5)
[07:04:46 -252088.647059] SLOW spr round 2 (radius: 5)
[07:05:38 -252088.643815] SLOW spr round 3 (radius: 10)
[07:06:31 -252088.643315] SLOW spr round 4 (radius: 15)
[07:08:07 -252088.337087] SLOW spr round 5 (radius: 5)
[07:09:16 -252088.307052] SLOW spr round 6 (radius: 10)
[07:10:21 -252088.306232] SLOW spr round 7 (radius: 15)
[07:11:48 -252088.305696] SLOW spr round 8 (radius: 20)
[07:13:53 -252088.305343] SLOW spr round 9 (radius: 25)
[07:16:19 -252088.305109] Model parameter optimization (eps = 0.100000)

[07:16:28] ML tree search #19, logLikelihood: -252087.762071

[07:16:28 -663214.807172] Initial branch length optimization
[07:16:31 -568762.745686] Model parameter optimization (eps = 10.000000)
[07:16:46 -566201.894204] AUTODETECT spr round 1 (radius: 5)
[07:17:31 -415930.873445] AUTODETECT spr round 2 (radius: 10)
[07:18:19 -329426.800427] AUTODETECT spr round 3 (radius: 15)
[07:19:18 -287546.831438] AUTODETECT spr round 4 (radius: 20)
[07:20:19 -278446.084843] AUTODETECT spr round 5 (radius: 25)
[07:21:28 -277613.184839] SPR radius for FAST iterations: 25 (autodetect)
[07:21:28 -277613.184839] Model parameter optimization (eps = 3.000000)
[07:21:40 -277532.338756] FAST spr round 1 (radius: 25)
[07:22:46 -253417.433496] FAST spr round 2 (radius: 25)
[07:23:36 -252174.949040] FAST spr round 3 (radius: 25)
[07:24:18 -252125.343238] FAST spr round 4 (radius: 25)
[07:24:55 -252122.665683] FAST spr round 5 (radius: 25)
[07:25:30 -252122.665380] Model parameter optimization (eps = 1.000000)
[07:25:39 -252120.226207] SLOW spr round 1 (radius: 5)
[07:26:33 -252081.144457] SLOW spr round 2 (radius: 5)
[07:27:25 -252080.934281] SLOW spr round 3 (radius: 5)
[07:28:16 -252080.933895] SLOW spr round 4 (radius: 10)
[07:29:12 -252076.093841] SLOW spr round 5 (radius: 5)
[07:30:19 -252074.691552] SLOW spr round 6 (radius: 5)
[07:31:16 -252074.691344] SLOW spr round 7 (radius: 10)
[07:32:14 -252073.845109] SLOW spr round 8 (radius: 5)
[07:33:20 -252073.608387] SLOW spr round 9 (radius: 5)
[07:34:18 -252072.248311] SLOW spr round 10 (radius: 5)
[07:35:13 -252072.247621] SLOW spr round 11 (radius: 10)
[07:36:09 -252072.247563] SLOW spr round 12 (radius: 15)
[07:37:47 -252072.247556] SLOW spr round 13 (radius: 20)
[07:39:58 -252072.247555] SLOW spr round 14 (radius: 25)
[07:42:37 -252072.247555] Model parameter optimization (eps = 0.100000)

[07:42:42] ML tree search #20, logLikelihood: -252072.011465


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.124358,0.344917) (0.154750,0.351940) (0.272251,0.735325) (0.448641,1.565731) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -252060.564860

AIC score: 506471.129719 / AICc score: 3270071.129719 / BIC score: 511822.001469
Free parameters (model + branch lengths): 1175

WARNING: Number of free parameters (K=1175) is larger than alignment size (n=702).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O95905/3_mltree/O95905.raxml.log

Analysis started: 04-Jul-2021 16:27:16 / finished: 05-Jul-2021 00:09:59

Elapsed time: 27762.819 seconds

Consumed energy: 2447.250 Wh (= 12 km in an electric car, or 61 km with an e-scooter!)