RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:23:06 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/2_msa/O95835_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/3_mltree/O95835.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647386 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/2_msa/O95835_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 1130 sites WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_G1MU99_G1MU99_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_H0YRN8_H0YRN8_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_U3J2B3_U3J2B3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091F0Q9_A0A091F0Q9_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091JI71_A0A091JI71_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A093PK26_A0A093PK26_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091VNX0_A0A091VNX0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091V6W0_A0A091V6W0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A099Z0Q2_A0A099Z0Q2_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A0A0AVM9_A0A0A0AVM9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A218UKX3_A0A218UKX3_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A226NIX5_A0A226NIX5_CALSU_9009 are exactly identical! WARNING: Sequences tr_M3YGG8_M3YGG8_MUSPF_9669 and tr_E2R001_E2R001_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YGG8_M3YGG8_MUSPF_9669 and tr_A0A2Y9KWK1_A0A2Y9KWK1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_G1RIH6_G1RIH6_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and sp_Q5R8M1_STK38_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_H2QSW7_H2QSW7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_I3MIC6_I3MIC6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and sp_Q15208_STK38_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_F7D1P8_F7D1P8_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_G3SWK1_G3SWK1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_U3E4E5_U3E4E5_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_G7P3B9_G7P3B9_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A0D9RD24_A0A0D9RD24_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2K5LUJ3_A0A2K5LUJ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2K6BFX2_A0A2K6BFX2_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2K5Y8D8_A0A2K5Y8D8_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2U3ZQ63_A0A2U3ZQ63_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2Y9JNH9_A0A2Y9JNH9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A384CAX4_A0A384CAX4_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_F7E684_F7E684_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_U3BCV6_U3BCV6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_G7PK27_G7PK27_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_A0A2K5XRK9_A0A2K5XRK9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QHG5_G3QHG5_GORGO_9595 and tr_H2Q5N0_H2Q5N0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QHG5_G3QHG5_GORGO_9595 and sp_Q9Y2H1_ST38L_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QHG5_G3QHG5_GORGO_9595 and tr_A0A2R9A7E7_A0A2R9A7E7_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q2LZZ7_TRC_DROPS_46245 and tr_B4H926_B4H926_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2QTW5_H2QTW5_PANTR_9598 and tr_A0A2R9B8J7_A0A2R9B8J7_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7C3H3_F7C3H3_MONDO_13616 and tr_G3W8X1_G3W8X1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7GGZ6_F7GGZ6_MONDO_13616 and tr_G3WEA1_G3WEA1_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A3B5R5U1_A0A3B5R5U1_XIPMA_8083 and tr_A0A087Y169_A0A087Y169_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088APM8_A0A088APM8_APIME_7460 and tr_A0A154P4J3_A0A154P4J3_9HYME_178035 are exactly identical! WARNING: Sequences tr_H0XPR6_H0XPR6_OTOGA_30611 and tr_A0A2Y9NHH8_A0A2Y9NHH8_DELLE_9749 are exactly identical! WARNING: Sequences tr_H9H421_H9H421_MACMU_9544 and tr_A0A2K6ANC2_A0A2K6ANC2_MACNE_9545 are exactly identical! WARNING: Sequences tr_B8B015_B8B015_ORYSI_39946 and tr_I1PX62_I1PX62_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8B015_B8B015_ORYSI_39946 and tr_A0A0E0PPU5_A0A0E0PPU5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8B015_B8B015_ORYSI_39946 and tr_A0A0D3G9N5_A0A0D3G9N5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_Q7PNN7_Q7PNN7_ANOGA_7165 and tr_A0A084VZ92_A0A084VZ92_ANOSI_74873 are exactly identical! WARNING: Sequences tr_F4WVE8_F4WVE8_ACREC_103372 and tr_A0A195FL67_A0A195FL67_9HYME_34720 are exactly identical! WARNING: Sequences tr_L0PB67_L0PB67_PNEJ8_1209962 and tr_A0A0W4ZS12_A0A0W4ZS12_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_A0A015LKJ8_A0A015LKJ8_9GLOM_1432141 and tr_A0A2I1GIH5_A0A2I1GIH5_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A067FAE3_A0A067FAE3_CITSI_2711 and tr_V4TZ51_V4TZ51_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A0D9R5M2_A0A0D9R5M2_CHLSB_60711 and tr_A0A2K5NAH5_A0A2K5NAH5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D2PMV0_A0A0D2PMV0_GOSRA_29730 and tr_A0A1U8MCE7_A0A1U8MCE7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091JH70_A0A091JH70_EGRGA_188379 and tr_A0A091V3Q1_A0A091V3Q1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JH70_A0A091JH70_EGRGA_188379 and tr_A0A087R1M4_A0A087R1M4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JH70_A0A091JH70_EGRGA_188379 and tr_A0A091WJJ8_A0A091WJJ8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JH70_A0A091JH70_EGRGA_188379 and tr_A0A0A0A7D5_A0A0A0A7D5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JH70_A0A091JH70_EGRGA_188379 and tr_A0A093GAV0_A0A093GAV0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JH70_A0A091JH70_EGRGA_188379 and tr_A0A218UH16_A0A218UH16_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A194QYF9_A0A194QYF9_PAPMA_76193 and tr_A0A194PMW2_A0A194PMW2_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091FNM7_A0A091FNM7_9AVES_55661 and tr_A0A2I0MKS5_A0A2I0MKS5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0V0WDF9_A0A0V0WDF9_9BILA_92179 and tr_A0A0V0VFW8_A0A0V0VFW8_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0WDF9_A0A0V0WDF9_9BILA_92179 and tr_A0A0V1KX28_A0A0V1KX28_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WDF9_A0A0V0WDF9_9BILA_92179 and tr_A0A0V0UG40_A0A0V0UG40_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A164Z6G0_A0A164Z6G0_9HOMO_1314777 and tr_A0A166EIA9_A0A166EIA9_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S3WXH7_A0A1S3WXH7_TOBAC_4097 and tr_A0A1U7VTR6_A0A1U7VTR6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YHF3_A0A1S3YHF3_TOBAC_4097 and tr_A0A1U7WRU8_A0A1U7WRU8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AUF8_A0A1S4AUF8_TOBAC_4097 and tr_A0A1U7YEU3_A0A1U7YEU3_NICSY_4096 are exactly identical! WARNING: Sequences tr_C0H9M9_C0H9M9_SALSA_8030 and tr_A0A060W576_A0A060W576_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3V7X7_A0A1S3V7X7_VIGRR_3916 and tr_A0A3Q0FF71_A0A3Q0FF71_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A2D0T4H8_A0A2D0T4H8_ICTPU_7998 and tr_A0A2D0T4I6_A0A2D0T4I6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2N5V3N1_A0A2N5V3N1_9BASI_200324 and tr_A0A2N5V7C2_A0A2N5V7C2_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2U4CIW0_A0A2U4CIW0_TURTR_9739 and tr_A0A2Y9ENU4_A0A2Y9ENU4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WAH1_A0A2U3WAH1_ODORO_9708 and tr_A0A2U3YAZ5_A0A2U3YAZ5_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 76 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835.raxml.reduced.phy Alignment comprises 1 partitions and 1130 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 1130 Gaps: 47.41 % Invariant sites: 2.74 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/3_mltree/O95835.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 283 / 22640 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -245662.177452 [00:00:00 -245662.177452] Initial branch length optimization [00:00:02 -222877.941755] Model parameter optimization (eps = 0.100000) [00:01:56] Tree #1, final logLikelihood: -222298.777361 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.108709,0.093832) (0.115216,0.144624) (0.228471,0.522823) (0.547604,1.558948) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O95835/4_raxmlng_ancestral/O95835.raxml.log Analysis started: 02-Jun-2021 18:23:06 / finished: 02-Jun-2021 18:25:13 Elapsed time: 127.484 seconds Consumed energy: 9.605 Wh