RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 15-Jul-2021 00:55:41 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/2_msa/O95822_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/2_msa/O95822_trimmed_msa.fasta
[00:00:00] Loaded alignment with 343 taxa and 247 sites

WARNING: Sequences tr_H2NRL9_H2NRL9_PONAB_9601 and tr_A0A0D9S1B6_A0A0D9S1B6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H2NRL9_H2NRL9_PONAB_9601 and tr_A0A2K5NXS7_A0A2K5NXS7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A0E0IIV9_A0A0E0IIV9_ORYNI_4536 and tr_A0A0E0B2J0_A0A0E0B2J0_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_F7A0H2_F7A0H2_MACMU_9544 and tr_G7PZV0_G7PZV0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7A0H2_F7A0H2_MACMU_9544 and tr_A0A2K6CC24_A0A2K6CC24_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F4P0G2_F4P0G2_BATDJ_684364 and tr_A0A177WFK5_A0A177WFK5_BATDE_403673 are exactly identical!
WARNING: Sequences tr_F4P7J3_F4P7J3_BATDJ_684364 and tr_A0A177WPN5_A0A177WPN5_BATDE_403673 are exactly identical!
WARNING: Sequences tr_H0Z1N6_H0Z1N6_TAEGU_59729 and tr_A0A218V6N7_A0A218V6N7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZWQ0_H0ZWQ0_TAEGU_59729 and tr_A0A091FNV7_A0A091FNV7_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A0E0QR06_A0A0E0QR06_ORYRU_4529 and tr_Q6H400_Q6H400_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_M8A230_M8A230_TRIUA_4572 and tr_A0A3B6KFP5_A0A3B6KFP5_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A015JZN3_A0A015JZN3_9GLOM_1432141 and tr_A0A2H5TUQ6_A0A2H5TUQ6_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A044SUU8_A0A044SUU8_ONCVO_6282 and tr_A0A182E3U8_A0A182E3U8_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A078G7A4_A0A078G7A4_BRANA_3708 and tr_A0A0D3B8J4_A0A0D3B8J4_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A1S4D4K5_A0A1S4D4K5_TOBAC_4097 and tr_A0A1U7XM13_A0A1U7XM13_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1I7T8H2_A0A1I7T8H2_9PELO_1561998 and tr_A0A1I7T8H3_A0A1I7T8H3_9PELO_1561998 are exactly identical!
WARNING: Duplicate sequences found: 16

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822.raxml.reduced.phy

Alignment comprises 1 partitions and 247 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 247 / 247
Gaps: 9.21 %
Invariant sites: 0.40 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 343 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 247 / 19760
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -120116.022411] Initial branch length optimization
[00:00:01 -98576.408398] Model parameter optimization (eps = 10.000000)
[00:00:18 -98416.139930] AUTODETECT spr round 1 (radius: 5)
[00:00:48 -71568.030379] AUTODETECT spr round 2 (radius: 10)
[00:01:25 -56275.604483] AUTODETECT spr round 3 (radius: 15)
[00:02:08 -50291.031962] AUTODETECT spr round 4 (radius: 20)
[00:02:59 -47450.974219] AUTODETECT spr round 5 (radius: 25)
[00:03:48 -46937.597982] SPR radius for FAST iterations: 25 (autodetect)
[00:03:48 -46937.597982] Model parameter optimization (eps = 3.000000)
[00:03:58 -46899.948024] FAST spr round 1 (radius: 25)
[00:04:39 -42975.316468] FAST spr round 2 (radius: 25)
[00:05:12 -42837.109519] FAST spr round 3 (radius: 25)
[00:05:43 -42808.351821] FAST spr round 4 (radius: 25)
[00:06:08 -42797.180402] FAST spr round 5 (radius: 25)
[00:06:31 -42796.614341] FAST spr round 6 (radius: 25)
[00:06:53 -42796.331009] FAST spr round 7 (radius: 25)
[00:07:15 -42796.330953] Model parameter optimization (eps = 1.000000)
[00:07:23 -42794.758669] SLOW spr round 1 (radius: 5)
[00:08:05 -42784.455538] SLOW spr round 2 (radius: 5)
[00:08:46 -42782.567888] SLOW spr round 3 (radius: 5)
[00:09:27 -42781.469668] SLOW spr round 4 (radius: 5)
[00:10:04 -42781.469356] SLOW spr round 5 (radius: 10)
[00:10:44 -42781.232734] SLOW spr round 6 (radius: 5)
[00:11:40 -42780.890102] SLOW spr round 7 (radius: 5)
[00:12:25 -42780.890031] SLOW spr round 8 (radius: 10)
[00:13:08 -42780.890023] SLOW spr round 9 (radius: 15)
[00:14:09] [worker #2] ML tree search #3, logLikelihood: -42790.003308
[00:14:19 -42780.890015] SLOW spr round 10 (radius: 20)
[00:15:48 -42780.890006] SLOW spr round 11 (radius: 25)
[00:16:00] [worker #3] ML tree search #4, logLikelihood: -42789.389494
[00:16:24] [worker #4] ML tree search #5, logLikelihood: -42780.108390
[00:17:14] [worker #1] ML tree search #2, logLikelihood: -42779.763305
[00:17:20 -42780.889998] Model parameter optimization (eps = 0.100000)

[00:17:23] [worker #0] ML tree search #1, logLikelihood: -42780.820815

[00:17:23 -117236.496609] Initial branch length optimization
[00:17:24 -96453.875652] Model parameter optimization (eps = 10.000000)
[00:17:43 -96326.084952] AUTODETECT spr round 1 (radius: 5)
[00:18:12 -71370.208191] AUTODETECT spr round 2 (radius: 10)
[00:18:48 -58169.740043] AUTODETECT spr round 3 (radius: 15)
[00:19:34 -48575.093458] AUTODETECT spr round 4 (radius: 20)
[00:20:25 -47882.171846] AUTODETECT spr round 5 (radius: 25)
[00:21:23 -47728.252461] SPR radius for FAST iterations: 25 (autodetect)
[00:21:23 -47728.252461] Model parameter optimization (eps = 3.000000)
[00:21:33 -47671.192124] FAST spr round 1 (radius: 25)
[00:22:15 -43058.705777] FAST spr round 2 (radius: 25)
[00:22:49 -42834.067497] FAST spr round 3 (radius: 25)
[00:23:16 -42804.656780] FAST spr round 4 (radius: 25)
[00:23:38 -42804.541166] FAST spr round 5 (radius: 25)
[00:24:00 -42804.540980] Model parameter optimization (eps = 1.000000)
[00:24:06 -42801.128105] SLOW spr round 1 (radius: 5)
[00:24:50 -42786.157035] SLOW spr round 2 (radius: 5)
[00:25:31 -42783.122012] SLOW spr round 3 (radius: 5)
[00:26:09 -42783.121717] SLOW spr round 4 (radius: 10)
[00:26:49 -42783.121559] SLOW spr round 5 (radius: 15)
[00:28:05 -42783.121467] SLOW spr round 6 (radius: 20)
[00:29:41 -42783.121413] SLOW spr round 7 (radius: 25)
[00:31:14 -42783.121380] Model parameter optimization (eps = 0.100000)
[00:31:16] [worker #2] ML tree search #8, logLikelihood: -42781.463661

[00:31:19] [worker #0] ML tree search #6, logLikelihood: -42782.865597

[00:31:19 -119762.578547] Initial branch length optimization
[00:31:20 -99492.358639] Model parameter optimization (eps = 10.000000)
[00:31:22] [worker #4] ML tree search #10, logLikelihood: -42779.031277
[00:31:38 -99363.880965] AUTODETECT spr round 1 (radius: 5)
[00:32:00] [worker #1] ML tree search #7, logLikelihood: -42782.266683
[00:32:08 -71851.250401] AUTODETECT spr round 2 (radius: 10)
[00:32:43 -57915.060584] AUTODETECT spr round 3 (radius: 15)
[00:33:30 -48635.182322] AUTODETECT spr round 4 (radius: 20)
[00:33:32] [worker #3] ML tree search #9, logLikelihood: -42789.701008
[00:34:21 -47774.276959] AUTODETECT spr round 5 (radius: 25)
[00:35:17 -47773.480348] SPR radius for FAST iterations: 25 (autodetect)
[00:35:17 -47773.480348] Model parameter optimization (eps = 3.000000)
[00:35:26 -47742.426095] FAST spr round 1 (radius: 25)
[00:36:07 -42976.880748] FAST spr round 2 (radius: 25)
[00:36:39 -42822.005802] FAST spr round 3 (radius: 25)
[00:37:06 -42802.711763] FAST spr round 4 (radius: 25)
[00:37:29 -42801.358946] FAST spr round 5 (radius: 25)
[00:37:51 -42801.358939] Model parameter optimization (eps = 1.000000)
[00:37:59 -42798.587128] SLOW spr round 1 (radius: 5)
[00:38:43 -42783.274148] SLOW spr round 2 (radius: 5)
[00:39:25 -42781.501949] SLOW spr round 3 (radius: 5)
[00:40:05 -42781.082217] SLOW spr round 4 (radius: 5)
[00:40:44 -42781.082005] SLOW spr round 5 (radius: 10)
[00:41:24 -42778.126359] SLOW spr round 6 (radius: 5)
[00:42:22 -42774.476961] SLOW spr round 7 (radius: 5)
[00:43:08 -42773.577508] SLOW spr round 8 (radius: 5)
[00:43:49 -42773.577239] SLOW spr round 9 (radius: 10)
[00:44:18] [worker #4] ML tree search #15, logLikelihood: -42785.876303
[00:44:29 -42773.577195] SLOW spr round 10 (radius: 15)
[00:45:40 -42773.577182] SLOW spr round 11 (radius: 20)
[00:45:59] [worker #1] ML tree search #12, logLikelihood: -42790.253917
[00:47:05 -42773.577174] SLOW spr round 12 (radius: 25)
[00:48:29] [worker #3] ML tree search #14, logLikelihood: -42781.952349
[00:48:32 -42773.577166] Model parameter optimization (eps = 0.100000)

[00:48:38] [worker #0] ML tree search #11, logLikelihood: -42773.338228

[00:48:38 -119756.823246] Initial branch length optimization
[00:48:40 -99530.843288] Model parameter optimization (eps = 10.000000)
[00:48:41] [worker #2] ML tree search #13, logLikelihood: -42783.453633
[00:49:00 -99411.270544] AUTODETECT spr round 1 (radius: 5)
[00:49:30 -73681.196625] AUTODETECT spr round 2 (radius: 10)
[00:50:06 -59302.790058] AUTODETECT spr round 3 (radius: 15)
[00:50:50 -50448.242437] AUTODETECT spr round 4 (radius: 20)
[00:51:45 -48287.776632] AUTODETECT spr round 5 (radius: 25)
[00:52:42 -48174.114721] SPR radius for FAST iterations: 25 (autodetect)
[00:52:42 -48174.114721] Model parameter optimization (eps = 3.000000)
[00:52:55 -48128.389830] FAST spr round 1 (radius: 25)
[00:53:35 -43169.457773] FAST spr round 2 (radius: 25)
[00:54:06 -42827.660541] FAST spr round 3 (radius: 25)
[00:54:35 -42802.004453] FAST spr round 4 (radius: 25)
[00:55:01 -42797.572552] FAST spr round 5 (radius: 25)
[00:55:24 -42795.349151] FAST spr round 6 (radius: 25)
[00:55:46 -42795.101710] FAST spr round 7 (radius: 25)
[00:56:08 -42793.801222] FAST spr round 8 (radius: 25)
[00:56:30 -42793.801157] Model parameter optimization (eps = 1.000000)
[00:56:37 -42788.396117] SLOW spr round 1 (radius: 5)
[00:57:22 -42774.535008] SLOW spr round 2 (radius: 5)
[00:57:36] [worker #4] ML tree search #20, logLikelihood: -42781.808447
[00:58:03 -42773.360051] SLOW spr round 3 (radius: 5)
[00:58:41 -42773.359908] SLOW spr round 4 (radius: 10)
[00:59:21 -42773.359873] SLOW spr round 5 (radius: 15)
[01:00:35 -42773.359851] SLOW spr round 6 (radius: 20)
[01:02:04] [worker #1] ML tree search #17, logLikelihood: -42781.232943
[01:02:07 -42773.359835] SLOW spr round 7 (radius: 25)
[01:03:30 -42773.359824] Model parameter optimization (eps = 0.100000)

[01:03:35] [worker #0] ML tree search #16, logLikelihood: -42773.197213

[01:03:37] [worker #3] ML tree search #19, logLikelihood: -42778.997939
[01:06:18] [worker #2] ML tree search #18, logLikelihood: -42779.064764

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.159620,0.247470) (0.243643,0.398218) (0.358284,0.855561) (0.238454,2.335642) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -42773.197213

AIC score: 86924.394427 / AICc score: 1037744.394427 / BIC score: 89342.362991
Free parameters (model + branch lengths): 689

WARNING: Number of free parameters (K=689) is larger than alignment size (n=247).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O95822/3_mltree/O95822.raxml.log

Analysis started: 15-Jul-2021 00:55:41 / finished: 15-Jul-2021 02:01:59

Elapsed time: 3978.789 seconds