RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6258R CPU @ 2.70GHz, 56 cores, 187 GB RAM RAxML-NG was called at 04-Jun-2021 21:15:02 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/2_msa/O76039_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/2_msa/O76039_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 272 sites WARNING: Sequences tr_B4Q413_B4Q413_DROSI_7240 and tr_Q9VMN3_Q9VMN3_DROME_7227 are exactly identical! WARNING: Sequences tr_B4Q413_B4Q413_DROSI_7240 and tr_B4I1J1_B4I1J1_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q9DE44_Q9DE44_DANRE_7955 and tr_W5L1C4_W5L1C4_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A1D5PC55_A0A1D5PC55_CHICK_9031 and tr_A0A1V4JF68_A0A1V4JF68_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PC55_A0A1D5PC55_CHICK_9031 and tr_A0A218UGL2_A0A218UGL2_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_H0ZBP3_H0ZBP3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_U3JNY5_U3JNY5_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_U3IT20_U3IT20_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A091EH74_A0A091EH74_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A091JHB8_A0A091JHB8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A093PZU2_A0A093PZU2_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A091UR44_A0A091UR44_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A087QXF1_A0A087QXF1_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A093H9R5_A0A093H9R5_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A091WKW0_A0A091WKW0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A091GCC6_A0A091GCC6_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A0A0A0E2_A0A0A0A0E2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A2I0MLC2_A0A2I0MLC2_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A093GLA6_A0A093GLA6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A091HN33_A0A091HN33_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1BTX0_E1BTX0_CHICK_9031 and tr_A0A218VCE3_A0A218VCE3_9PASE_299123 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_M3YAB5_M3YAB5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_G1U1H1_G1U1H1_RABIT_9986 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_B6E1W2_B6E1W2_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_H0WJB4_H0WJB4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_Q197W4_Q197W4_PIG_9823 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and sp_Q02399_CDK5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_M3X3E1_M3X3E1_FELCA_9685 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A1S3AKJ9_A0A1S3AKJ9_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A1S3G1Z7_A0A1S3G1Z7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A1U7R6W2_A0A1U7R6W2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A2U3WJ68_A0A2U3WJ68_ODORO_9708 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A2U3Z7K7_A0A2U3Z7K7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A2Y9DDU0_A0A2Y9DDU0_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A2Y9K8Z3_A0A2Y9K8Z3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A2Y9FM68_A0A2Y9FM68_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P49615_CDK5_MOUSE_10090 and tr_A0A383YRG4_A0A383YRG4_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_M3XUX2_M3XUX2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_G1REY2_G1REY2_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_G3R5F5_G3R5F5_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_F1PJ61_F1PJ61_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_A0A2J8IZ55_A0A2J8IZ55_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_F7BV09_F7BV09_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_W5PWC4_W5PWC4_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_D3ZG85_D3ZG85_RAT_10116 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_I3MN56_I3MN56_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and sp_O76039_CDKL5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_G5BDT6_G5BDT6_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_G3T3P7_G3T3P7_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_F7ID12_F7ID12_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_G1MEK8_G1MEK8_AILME_9646 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_A0A1U7U0R0_A0A1U7U0R0_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_A0A1U8C8E3_A0A1U8C8E3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_A0A2R8ZVB9_A0A2R8ZVB9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_A0A2U3W0W3_A0A2U3W0W3_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q3UTQ8_CDKL5_MOUSE_10090 and tr_A0A2Y9K1M2_A0A2Y9K1M2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_W5JUK9_W5JUK9_ANODA_43151 and tr_Q7QBG7_Q7QBG7_ANOGA_7165 are exactly identical! WARNING: Sequences tr_M3Y138_M3Y138_MUSPF_9669 and tr_A0A2Y9ICG8_A0A2Y9ICG8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_G1SIH0_G1SIH0_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_E2RGJ9_E2RGJ9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_A0A287D2U8_A0A287D2U8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_H0X1M2_H0X1M2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_C0SW08_C0SW08_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_A0A1U7TZ69_A0A1U7TZ69_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_A0A2U3WCI9_A0A2U3WCI9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_A0A2Y9D9B6_A0A2Y9D9B6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_A0A2Y9J6H1_A0A2Y9J6H1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YI10_M3YI10_MUSPF_9669 and tr_A0A384CH70_A0A384CH70_URSMA_29073 are exactly identical! WARNING: Sequences sp_P23572_CDK1_DROME_7227 and tr_B4HWM9_B4HWM9_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2I3G9U5_A0A2I3G9U5_NOMLE_61853 and tr_G3RBW7_G3RBW7_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3G9U5_A0A2I3G9U5_NOMLE_61853 and tr_H2R7P8_H2R7P8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G9U5_A0A2I3G9U5_NOMLE_61853 and sp_P06493_CDK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3G9U5_A0A2I3G9U5_NOMLE_61853 and tr_A0A2R9C1X9_A0A2R9C1X9_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NL77_H2NL77_PONAB_9601 and tr_G7PA83_G7PA83_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PP22_H2PP22_PONAB_9601 and sp_Q00535_CDK5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PP22_H2PP22_PONAB_9601 and tr_F6ZE37_F6ZE37_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2PP22_H2PP22_PONAB_9601 and tr_A0A1U7UY79_A0A1U7UY79_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H2PP22_H2PP22_PONAB_9601 and tr_A0A2K5M9K0_A0A2K5M9K0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PP22_H2PP22_PONAB_9601 and tr_A0A2K6E678_A0A2K6E678_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1NPA2_G1NPA2_MELGA_9103 and tr_A0A099Z0T2_A0A099Z0T2_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1SJC0_G1SJC0_RABIT_9986 and sp_Q9TTK0_CDKL2_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q29KN8_Q29KN8_DROPS_46245 and tr_B4GT16_B4GT16_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3S5W2_A0A2I3S5W2_PANTR_9598 and tr_A0A1D5R4F3_A0A1D5R4F3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3S5W2_A0A2I3S5W2_PANTR_9598 and tr_A0A0D9RRM5_A0A0D9RRM5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3S5W2_A0A2I3S5W2_PANTR_9598 and tr_A0A2K6D499_A0A2K6D499_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3S5W2_A0A2I3S5W2_PANTR_9598 and tr_A0A2K5YJ07_A0A2K5YJ07_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3S5W2_A0A2I3S5W2_PANTR_9598 and tr_A0A2R9C4D6_A0A2R9C4D6_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QRH8_H2QRH8_PANTR_9598 and tr_A0A2R9B1S2_A0A2R9B1S2_PANPA_9597 are exactly identical! WARNING: Sequences tr_B7U175_B7U175_SHEEP_9940 and sp_P48734_CDK1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PCQ1_W5PCQ1_SHEEP_9940 and tr_A6H7E6_A6H7E6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5QR80_A0A3B5QR80_XIPMA_8083 and tr_A0A087YGH9_A0A087YGH9_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AWM2_M4AWM2_XIPMA_8083 and tr_I3JSU3_I3JSU3_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4AWM2_M4AWM2_XIPMA_8083 and tr_A0A087Y5D2_A0A087Y5D2_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AWM2_M4AWM2_XIPMA_8083 and tr_A0A2I4CZ65_A0A2I4CZ65_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A087ZW58_A0A087ZW58_APIME_7460 and tr_A0A2A3EMF0_A0A2A3EMF0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088A4R1_A0A088A4R1_APIME_7460 and tr_A0A2A3EA15_A0A2A3EA15_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088ABR9_A0A088ABR9_APIME_7460 and tr_A0A2A3EJD4_A0A2A3EJD4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NMZ5_A0A158NMZ5_ATTCE_12957 and tr_A0A151I170_A0A151I170_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A287DE97_A0A287DE97_ICTTR_43179 and tr_A0A286Y447_A0A286Y447_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8IVW4_CDKL3_HUMAN_9606 and tr_F6TVA3_F6TVA3_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8IVW4_CDKL3_HUMAN_9606 and tr_G7P8A4_G7P8A4_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8IVW4_CDKL3_HUMAN_9606 and tr_A0A096N166_A0A096N166_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8IVW4_CDKL3_HUMAN_9606 and tr_A0A0D9RMC2_A0A0D9RMC2_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8IVW4_CDKL3_HUMAN_9606 and tr_A0A2K6BX53_A0A2K6BX53_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0E0HDV4_A0A0E0HDV4_ORYNI_4536 and tr_I1PV98_I1PV98_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HDV4_A0A0E0HDV4_ORYNI_4536 and sp_Q6I5Y0_CDKC1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F7FIM6_F7FIM6_MACMU_9544 and tr_A0A2K6B6I2_A0A2K6B6I2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FIM6_F7FIM6_MACMU_9544 and tr_A0A2K5XWL3_A0A2K5XWL3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GQY2_F7GQY2_MACMU_9544 and tr_A0A2K6CEQ0_A0A2K6CEQ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GRY6_F7GRY6_MACMU_9544 and tr_A0A096P561_A0A096P561_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7MT21_G7MT21_MACMU_9544 and tr_G7P564_G7P564_MACFA_9541 are exactly identical! WARNING: Sequences tr_F4NUD8_F4NUD8_BATDJ_684364 and tr_A0A177W9U0_A0A177W9U0_BATDE_403673 are exactly identical! WARNING: Sequences tr_H0Z4J5_H0Z4J5_TAEGU_59729 and tr_U3KFU5_U3KFU5_FICAL_59894 are exactly identical! WARNING: Sequences tr_F4WI76_F4WI76_ACREC_103372 and tr_A0A195F2S6_A0A195F2S6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A8Y4R5_A8Y4R5_CAEBR_6238 and tr_A0A2G5THT3_A0A2G5THT3_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1M5B9_G1M5B9_AILME_9646 and tr_A0A384BW98_A0A384BW98_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3VVZ0_M3VVZ0_FELCA_9685 and tr_A0A384CIQ6_A0A384CIQ6_URSMA_29073 are exactly identical! WARNING: Sequences tr_W2QFL4_W2QFL4_PHYPN_761204 and tr_A0A0W8D7K7_A0A0W8D7K7_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QFL4_W2QFL4_PHYPN_761204 and tr_W2LLK8_W2LLK8_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2RB39_W2RB39_PHYPN_761204 and tr_A0A0W8C2M4_A0A0W8C2M4_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RB39_W2RB39_PHYPN_761204 and tr_W2GPC8_W2GPC8_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2RCA3_W2RCA3_PHYPN_761204 and tr_A0A0W8C7C6_A0A0W8C7C6_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RCA3_W2RCA3_PHYPN_761204 and tr_W2H4K5_W2H4K5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015K5N1_A0A015K5N1_9GLOM_1432141 and tr_A0A2I1EN26_A0A2I1EN26_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015K5N1_A0A015K5N1_9GLOM_1432141 and tr_A0A2H5SSM2_A0A2H5SSM2_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A151M707_A0A151M707_ALLMI_8496 and tr_A0A1U8DSM4_A0A1U8DSM4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2I0MFM8_A0A2I0MFM8_COLLI_8932 and tr_A0A1V4KJR3_A0A1V4KJR3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A164MMW7_A0A164MMW7_9HOMO_1314777 and tr_A0A166DHB0_A0A166DHB0_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1V8UYH6_A0A1V8UYH6_9PEZI_1974281 and tr_A0A1V8SHM1_A0A1V8SHM1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2D0Q8W3_A0A2D0Q8W3_ICTPU_7998 and tr_A0A2D0QAK1_A0A2D0QAK1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QLP7_A0A2D0QLP7_ICTPU_7998 and tr_A0A2D0QMB1_A0A2D0QMB1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SKB8_A0A2D0SKB8_ICTPU_7998 and tr_A0A2D0SLJ8_A0A2D0SLJ8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T6B3_A0A2D0T6B3_ICTPU_7998 and tr_A0A2D0T6B9_A0A2D0T6B9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K6APA4_A0A2K6APA4_MACNE_9545 and tr_A0A2K5ZIQ2_A0A2K5ZIQ2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AQD7_A0A2U4AQD7_TURTR_9739 and tr_A0A2Y9MGX6_A0A2Y9MGX6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AQD7_A0A2U4AQD7_TURTR_9739 and tr_A0A2Y9S555_A0A2Y9S555_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AQD7_A0A2U4AQD7_TURTR_9739 and tr_A0A383ZEW8_A0A383ZEW8_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9M3M2_A0A2Y9M3M2_DELLE_9749 and tr_A0A2Y9SDY7_A0A2Y9SDY7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9QIK1_A0A2Y9QIK1_DELLE_9749 and tr_A0A2Y9F3B1_A0A2Y9F3B1_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 139 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039.raxml.reduced.phy Alignment comprises 1 partitions and 272 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 272 / 272 Gaps: 2.45 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 272 / 21760 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -416408.626314] Initial branch length optimization [00:00:07 -350063.689828] Model parameter optimization (eps = 10.000000) [00:01:03 -348434.585240] AUTODETECT spr round 1 (radius: 5) [00:04:56 -221233.011721] AUTODETECT spr round 2 (radius: 10) [00:09:06 -156675.448223] AUTODETECT spr round 3 (radius: 15) [00:13:15 -129113.297081] AUTODETECT spr round 4 (radius: 20) [00:18:25 -113519.608437] AUTODETECT spr round 5 (radius: 25) [00:24:11 -108585.894588] SPR radius for FAST iterations: 25 (autodetect) [00:24:11 -108585.894588] Model parameter optimization (eps = 3.000000) [00:24:42 -108529.879606] FAST spr round 1 (radius: 25) [00:28:31 -93751.498386] FAST spr round 2 (radius: 25) [00:31:26 -93047.950109] FAST spr round 3 (radius: 25) [00:34:05 -93001.632822] FAST spr round 4 (radius: 25) [00:36:30 -92992.175723] FAST spr round 5 (radius: 25) [00:38:50 -92989.409494] FAST spr round 6 (radius: 25) [00:41:05 -92988.127112] FAST spr round 7 (radius: 25) [00:43:17 -92988.127007] Model parameter optimization (eps = 1.000000) [00:43:38 -92986.862905] SLOW spr round 1 (radius: 5) [00:46:40 -92949.421679] SLOW spr round 2 (radius: 5) [00:49:43 -92944.332537] SLOW spr round 3 (radius: 5) [00:52:38 -92943.315573] SLOW spr round 4 (radius: 5) [00:55:30 -92943.315484] SLOW spr round 5 (radius: 10) [00:58:35 -92938.843865] SLOW spr round 6 (radius: 5) [01:02:18 -92938.843634] SLOW spr round 7 (radius: 10) [01:05:42 -92938.843629] SLOW spr round 8 (radius: 15) [01:10:15 -92938.843629] SLOW spr round 9 (radius: 20) [01:17:17 -92938.536515] SLOW spr round 10 (radius: 5) [01:21:18 -92938.535753] SLOW spr round 11 (radius: 10) [01:25:00 -92938.535711] SLOW spr round 12 (radius: 15) [01:26:36] [worker #2] ML tree search #3, logLikelihood: -92927.442803 [01:29:33 -92938.535709] SLOW spr round 13 (radius: 20) [01:30:52] [worker #4] ML tree search #5, logLikelihood: -92949.156504 [01:32:43] [worker #1] ML tree search #2, logLikelihood: -92938.628817 [01:36:39 -92938.535709] SLOW spr round 14 (radius: 25) [01:43:14] [worker #3] ML tree search #4, logLikelihood: -92939.010881 [01:45:43 -92938.535709] Model parameter optimization (eps = 0.100000) [01:45:58] [worker #0] ML tree search #1, logLikelihood: -92938.255448 [01:45:58 -419515.842421] Initial branch length optimization [01:46:05 -353552.588578] Model parameter optimization (eps = 10.000000) [01:46:55 -351757.408122] AUTODETECT spr round 1 (radius: 5) [01:50:47 -216964.844844] AUTODETECT spr round 2 (radius: 10) [01:54:55 -155558.105791] AUTODETECT spr round 3 (radius: 15) [01:59:01 -132859.981801] AUTODETECT spr round 4 (radius: 20) [02:03:53 -117146.019148] AUTODETECT spr round 5 (radius: 25) [02:09:18 -110727.365519] SPR radius for FAST iterations: 25 (autodetect) [02:09:18 -110727.365519] Model parameter optimization (eps = 3.000000) [02:09:51 -110616.855292] FAST spr round 1 (radius: 25) [02:14:03 -93855.385315] FAST spr round 2 (radius: 25) [02:17:21 -93235.277783] FAST spr round 3 (radius: 25) [02:20:02 -93193.628408] FAST spr round 4 (radius: 25) [02:22:28 -93190.707492] FAST spr round 5 (radius: 25) [02:24:51 -93186.317444] FAST spr round 6 (radius: 25) [02:27:08 -93186.317357] Model parameter optimization (eps = 1.000000) [02:27:25 -93181.412435] SLOW spr round 1 (radius: 5) [02:30:30 -93150.523221] SLOW spr round 2 (radius: 5) [02:33:34 -93121.316596] SLOW spr round 3 (radius: 5) [02:36:36 -93121.155994] SLOW spr round 4 (radius: 5) [02:39:37 -93121.155798] SLOW spr round 5 (radius: 10) [02:42:44 -93121.155668] SLOW spr round 6 (radius: 15) [02:47:02] [worker #2] ML tree search #8, logLikelihood: -92936.807887 [02:47:35 -93121.155660] SLOW spr round 7 (radius: 20) [02:54:39 -93114.033598] SLOW spr round 8 (radius: 5) [02:58:46 -93070.718734] SLOW spr round 9 (radius: 5) [02:59:10] [worker #1] ML tree search #7, logLikelihood: -92930.747012 [03:02:23 -92957.525451] SLOW spr round 10 (radius: 5) [03:05:35 -92939.468680] SLOW spr round 11 (radius: 5) [03:08:37 -92938.479838] SLOW spr round 12 (radius: 5) [03:11:19] [worker #4] ML tree search #10, logLikelihood: -92950.561619 [03:11:31 -92938.479788] SLOW spr round 13 (radius: 10) [03:14:36 -92938.080271] SLOW spr round 14 (radius: 5) [03:18:20 -92937.438452] SLOW spr round 15 (radius: 5) [03:21:35 -92937.438385] SLOW spr round 16 (radius: 10) [03:24:44 -92937.438384] SLOW spr round 17 (radius: 15) [03:29:24 -92932.025191] SLOW spr round 18 (radius: 5) [03:30:34] [worker #3] ML tree search #9, logLikelihood: -92934.887769 [03:33:21 -92932.025183] SLOW spr round 19 (radius: 10) [03:36:56 -92932.025182] SLOW spr round 20 (radius: 15) [03:41:25 -92932.025182] SLOW spr round 21 (radius: 20) [03:48:32 -92932.025181] SLOW spr round 22 (radius: 25) [03:57:18 -92932.025180] Model parameter optimization (eps = 0.100000) [03:57:30] [worker #0] ML tree search #6, logLikelihood: -92931.548357 [03:57:30 -416447.258771] Initial branch length optimization [03:57:38 -350132.437955] Model parameter optimization (eps = 10.000000) [03:58:38 -348558.117345] AUTODETECT spr round 1 (radius: 5) [04:02:27 -221924.090999] AUTODETECT spr round 2 (radius: 10) [04:06:33 -158421.157882] AUTODETECT spr round 3 (radius: 15) [04:10:33] [worker #2] ML tree search #13, logLikelihood: -92937.571592 [04:10:48 -128040.780109] AUTODETECT spr round 4 (radius: 20) [04:15:27 -110158.783782] AUTODETECT spr round 5 (radius: 25) [04:21:19 -108402.529686] SPR radius for FAST iterations: 25 (autodetect) [04:21:19 -108402.529686] Model parameter optimization (eps = 3.000000) [04:21:47 -108339.406350] FAST spr round 1 (radius: 25) [04:25:52 -93778.269348] FAST spr round 2 (radius: 25) [04:28:46 -93291.330645] FAST spr round 3 (radius: 25) [04:31:24 -93257.192238] FAST spr round 4 (radius: 25) [04:33:48 -92972.249555] FAST spr round 5 (radius: 25) [04:36:02 -92970.849842] FAST spr round 6 (radius: 25) [04:38:13 -92970.849454] Model parameter optimization (eps = 1.000000) [04:38:32 -92969.072582] SLOW spr round 1 (radius: 5) [04:41:26] [worker #3] ML tree search #14, logLikelihood: -92966.328422 [04:41:28] [worker #4] ML tree search #15, logLikelihood: -92927.607074 [04:41:31 -92943.296655] SLOW spr round 2 (radius: 5) [04:42:41] [worker #1] ML tree search #12, logLikelihood: -92937.227973 [04:44:31 -92941.869893] SLOW spr round 3 (radius: 5) [04:47:30 -92941.869335] SLOW spr round 4 (radius: 10) [04:50:38 -92939.658439] SLOW spr round 5 (radius: 5) [04:54:22 -92938.056079] SLOW spr round 6 (radius: 5) [04:57:38 -92938.056014] SLOW spr round 7 (radius: 10) [05:00:46 -92938.055977] SLOW spr round 8 (radius: 15) [05:05:29 -92938.055939] SLOW spr round 9 (radius: 20) [05:12:36 -92938.055901] SLOW spr round 10 (radius: 25) [05:21:17 -92938.055863] Model parameter optimization (eps = 0.100000) [05:21:32] [worker #0] ML tree search #11, logLikelihood: -92937.858585 [05:21:32 -418352.157180] Initial branch length optimization [05:21:40 -351634.816628] Model parameter optimization (eps = 10.000000) [05:22:34 -350018.886903] AUTODETECT spr round 1 (radius: 5) [05:26:21 -219713.406422] AUTODETECT spr round 2 (radius: 10) [05:30:28 -162087.936167] AUTODETECT spr round 3 (radius: 15) [05:34:47 -130178.412374] AUTODETECT spr round 4 (radius: 20) [05:38:59 -115707.645739] AUTODETECT spr round 5 (radius: 25) [05:44:21 -112090.947797] SPR radius for FAST iterations: 25 (autodetect) [05:44:21 -112090.947797] Model parameter optimization (eps = 3.000000) [05:44:49 -112000.063530] FAST spr round 1 (radius: 25) [05:48:54 -94014.030681] FAST spr round 2 (radius: 25) [05:51:52 -93098.726412] FAST spr round 3 (radius: 25) [05:51:57] [worker #2] ML tree search #18, logLikelihood: -92940.098694 [05:54:28 -93014.730069] FAST spr round 4 (radius: 25) [05:56:53 -92976.829121] FAST spr round 5 (radius: 25) [05:59:06 -92976.827963] Model parameter optimization (eps = 1.000000) [05:59:23 -92972.551508] SLOW spr round 1 (radius: 5) [06:02:23 -92952.897270] SLOW spr round 2 (radius: 5) [06:05:22 -92949.108063] SLOW spr round 3 (radius: 5) [06:08:19 -92949.107865] SLOW spr round 4 (radius: 10) [06:10:09] [worker #3] ML tree search #19, logLikelihood: -92943.576507 [06:11:22 -92949.107786] SLOW spr round 5 (radius: 15) [06:11:32] [worker #4] ML tree search #20, logLikelihood: -92957.005788 [06:16:10 -92949.107776] SLOW spr round 6 (radius: 20) [06:22:42 -92948.790359] SLOW spr round 7 (radius: 5) [06:25:35] [worker #1] ML tree search #17, logLikelihood: -92946.455077 [06:26:42 -92948.789580] SLOW spr round 8 (radius: 10) [06:30:26 -92948.789478] SLOW spr round 9 (radius: 15) [06:34:52 -92948.789476] SLOW spr round 10 (radius: 20) [06:41:32 -92948.789476] SLOW spr round 11 (radius: 25) [06:49:41 -92948.789476] Model parameter optimization (eps = 0.100000) [06:49:56] [worker #0] ML tree search #16, logLikelihood: -92947.815650 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.256874,0.380307) (0.305704,0.464845) (0.264612,1.171241) (0.172810,2.605637) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -92927.442803 AIC score: 189864.885606 / AICc score: 8233924.885606 / BIC score: 197094.518749 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=272). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O76039/3_mltree/O76039.raxml.log Analysis started: 04-Jun-2021 21:15:02 / finished: 05-Jun-2021 04:04:58 Elapsed time: 24596.299 seconds Consumed energy: 2583.647 Wh (= 13 km in an electric car, or 65 km with an e-scooter!)