RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 09-Jul-2021 05:24:15 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/2_msa/O75907_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/2_msa/O75907_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 344 sites

WARNING: Sequences tr_J3KC84_J3KC84_COCIM_246410 and tr_E9D013_E9D013_COCPS_443226 are exactly identical!
WARNING: Sequences tr_J3KHX1_J3KHX1_COCIM_246410 and tr_E9DDB8_E9DDB8_COCPS_443226 are exactly identical!
WARNING: Sequences tr_J3KHX1_J3KHX1_COCIM_246410 and tr_A0A0J6Y2C4_A0A0J6Y2C4_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B2VRJ8_B2VRJ8_PYRTR_426418 and tr_A0A2W1G5Y0_A0A2W1G5Y0_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_G3RU45_G3RU45_GORGO_9595 and tr_K7CE61_K7CE61_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RU45_G3RU45_GORGO_9595 and sp_O75907_DGAT1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G2X7I6_G2X7I6_VERDV_498257 and tr_A0A0G4MIL8_A0A0G4MIL8_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_Q29MV0_Q29MV0_DROPS_46245 and tr_B4G8P4_B4G8P4_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A179UVC2_A0A179UVC2_BLAGS_559298 and tr_C5G8J5_C5G8J5_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_C6H4S5_C6H4S5_AJECH_544712 and tr_F0U910_F0U910_AJEC8_544711 are exactly identical!
WARNING: Sequences sp_Q9SLD2_DGAT1_ARATH_3702 and tr_D7L701_D7L701_ARALL_81972 are exactly identical!
WARNING: Sequences tr_A0A0E0HAR9_A0A0E0HAR9_ORYNI_4536 and tr_A0A0E0PIM9_A0A0E0PIM9_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0HAR9_A0A0E0HAR9_ORYNI_4536 and tr_A0A0D3G479_A0A0D3G479_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0HAR9_A0A0E0HAR9_ORYNI_4536 and tr_A0A0D9ZVD6_A0A0D9ZVD6_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_G7XHJ4_G7XHJ4_ASPKW_1033177 and tr_A0A100IPM8_A0A100IPM8_ASPNG_5061 are exactly identical!
WARNING: Sequences tr_G7XHJ4_G7XHJ4_ASPKW_1033177 and tr_A0A1L9MUC2_A0A1L9MUC2_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_G7XHJ4_G7XHJ4_ASPKW_1033177 and tr_A0A317UVQ9_A0A317UVQ9_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_B8AYX7_B8AYX7_ORYSI_39946 and tr_I1PT66_I1PT66_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_B8AYX7_B8AYX7_ORYSI_39946 and sp_Q5I396_DAT11_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_F4P522_F4P522_BATDJ_684364 and tr_A0A177WGY1_A0A177WGY1_BATDE_403673 are exactly identical!
WARNING: Sequences tr_F9X6F4_F9X6F4_ZYMTI_336722 and tr_A0A1X7RPA9_A0A1X7RPA9_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_G2YJU8_G2YJU8_BOTF4_999810 and tr_M7V019_M7V019_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_F2SK38_F2SK38_TRIRC_559305 and tr_D4AKV6_D4AKV6_ARTBC_663331 are exactly identical!
WARNING: Sequences tr_F2SK38_F2SK38_TRIRC_559305 and tr_A0A178ESG8_A0A178ESG8_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_A0A0D2XEC0_A0A0D2XEC0_FUSO4_426428 and tr_N4TL33_N4TL33_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_A0A0D2XEC0_A0A0D2XEC0_FUSO4_426428 and tr_X0C0B5_X0C0B5_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_A0A0D2XEC0_A0A0D2XEC0_FUSO4_426428 and tr_A0A2H3TMR2_A0A2H3TMR2_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_A0A0D2XEC0_A0A0D2XEC0_FUSO4_426428 and tr_A0A2H3H7T0_A0A2H3H7T0_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_M2SK27_M2SK27_COCH5_701091 and tr_W6XVG2_W6XVG2_COCCA_930089 are exactly identical!
WARNING: Sequences tr_V2XVC8_V2XVC8_MONRO_1381753 and tr_A0A0W0FZ07_A0A0W0FZ07_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A067EQP4_A0A067EQP4_CITSI_2711 and tr_A0A2H5PZ08_A0A2H5PZ08_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A094EUW7_A0A094EUW7_9PEZI_1420912 and tr_A0A1B8GDB1_A0A1B8GDB1_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_A0A094GWU9_A0A094GWU9_9PEZI_1420912 and tr_A0A1B8GVC2_A0A1B8GVC2_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_A0A0F8UJU3_A0A0F8UJU3_9EURO_308745 and tr_A0A2T5LLB6_A0A2T5LLB6_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0N4TR44_A0A0N4TR44_BRUPA_6280 and tr_A0A0R3QXP9_A0A0R3QXP9_9BILA_42155 are exactly identical!
WARNING: Sequences tr_A0A0A1N2G2_A0A0A1N2G2_9FUNG_58291 and tr_A0A367KC53_A0A367KC53_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1P9U4_A0A0A1P9U4_9FUNG_58291 and tr_A0A367JEM7_A0A367JEM7_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0G4PG41_A0A0G4PG41_PENCA_1429867 and tr_A0A101MR31_A0A101MR31_9EURO_48697 are exactly identical!
WARNING: Sequences tr_A0A0V1AFG5_A0A0V1AFG5_9BILA_990121 and tr_A0A0V0UHG7_A0A0V0UHG7_9BILA_144512 are exactly identical!
WARNING: Sequences tr_I1RRG7_I1RRG7_GIBZE_229533 and tr_A0A2T4H404_A0A2T4H404_FUSCU_5516 are exactly identical!
WARNING: Sequences tr_A0A166NZ76_A0A166NZ76_9HOMO_436010 and tr_A0A167TTM5_A0A167TTM5_9HOMO_436010 are exactly identical!
WARNING: Sequences tr_A0A1S3Z9C4_A0A1S3Z9C4_TOBAC_4097 and tr_A0A1U7WBM6_A0A1U7WBM6_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1L9X2Z7_A0A1L9X2Z7_ASPAC_690307 and tr_A0A2V5HNK2_A0A2V5HNK2_9EURO_1450538 are exactly identical!
WARNING: Duplicate sequences found: 43

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907.raxml.reduced.phy

Alignment comprises 1 partitions and 344 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 344 / 344
Gaps: 5.14 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 344 / 27520
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -662084.701965] Initial branch length optimization
[00:00:09 -546129.576412] Model parameter optimization (eps = 10.000000)
[00:01:42 -543164.723513] AUTODETECT spr round 1 (radius: 5)
[00:06:40 -360029.842871] AUTODETECT spr round 2 (radius: 10)
[00:11:51 -276269.563809] AUTODETECT spr round 3 (radius: 15)
[00:17:29 -238035.859631] AUTODETECT spr round 4 (radius: 20)
[00:24:04 -210422.440130] AUTODETECT spr round 5 (radius: 25)
[00:31:41 -200761.251332] SPR radius for FAST iterations: 25 (autodetect)
[00:31:41 -200761.251332] Model parameter optimization (eps = 3.000000)
[00:32:17 -200025.340897] FAST spr round 1 (radius: 25)
[00:38:19 -165317.059820] FAST spr round 2 (radius: 25)
[00:42:20 -162303.347385] FAST spr round 3 (radius: 25)
[00:45:44 -162037.679018] FAST spr round 4 (radius: 25)
[00:48:48 -162022.633685] FAST spr round 5 (radius: 25)
[00:51:38 -162021.616006] FAST spr round 6 (radius: 25)
[00:54:27 -162021.615771] Model parameter optimization (eps = 1.000000)
[00:55:02 -162011.594970] SLOW spr round 1 (radius: 5)
[00:59:24 -161972.965405] SLOW spr round 2 (radius: 5)
[01:03:24 -161968.867699] SLOW spr round 3 (radius: 5)
[01:07:16 -161968.867478] SLOW spr round 4 (radius: 10)
[01:11:17 -161968.251969] SLOW spr round 5 (radius: 5)
[01:16:27 -161967.209123] SLOW spr round 6 (radius: 5)
[01:20:51 -161967.209063] SLOW spr round 7 (radius: 10)
[01:24:59 -161967.209011] SLOW spr round 8 (radius: 15)
[01:31:35 -161967.208959] SLOW spr round 9 (radius: 20)
[01:39:26] [worker #1] ML tree search #2, logLikelihood: -161941.802034
[01:40:06] [worker #2] ML tree search #3, logLikelihood: -161945.206544
[01:41:02 -161967.208907] SLOW spr round 10 (radius: 25)
[01:51:40] [worker #3] ML tree search #4, logLikelihood: -161962.970973
[01:52:21 -161967.208853] Model parameter optimization (eps = 0.100000)

[01:52:35] [worker #0] ML tree search #1, logLikelihood: -161967.046024

[01:52:35 -662017.147039] Initial branch length optimization
[01:52:45 -545122.694384] Model parameter optimization (eps = 10.000000)
[01:54:47 -542068.969430] AUTODETECT spr round 1 (radius: 5)
[01:55:27] [worker #4] ML tree search #5, logLikelihood: -161981.931421
[01:59:43 -361296.368261] AUTODETECT spr round 2 (radius: 10)
[02:04:54 -265094.089961] AUTODETECT spr round 3 (radius: 15)
[02:10:25 -223880.457404] AUTODETECT spr round 4 (radius: 20)
[02:17:41 -194203.043302] AUTODETECT spr round 5 (radius: 25)
[02:24:59 -189007.489759] SPR radius for FAST iterations: 25 (autodetect)
[02:24:59 -189007.489759] Model parameter optimization (eps = 3.000000)
[02:25:38 -188278.061137] FAST spr round 1 (radius: 25)
[02:31:10 -163307.609522] FAST spr round 2 (radius: 25)
[02:35:17 -162072.253794] FAST spr round 3 (radius: 25)
[02:38:42 -162033.412727] FAST spr round 4 (radius: 25)
[02:41:49 -162024.819853] FAST spr round 5 (radius: 25)
[02:44:45 -162019.730284] FAST spr round 6 (radius: 25)
[02:47:34 -162019.730166] Model parameter optimization (eps = 1.000000)
[02:48:10 -162016.493512] SLOW spr round 1 (radius: 5)
[02:52:36 -161963.357209] SLOW spr round 2 (radius: 5)
[02:56:45 -161960.273676] SLOW spr round 3 (radius: 5)
[03:00:37 -161960.273214] SLOW spr round 4 (radius: 10)
[03:04:40 -161958.063471] SLOW spr round 5 (radius: 5)
[03:09:51 -161957.368361] SLOW spr round 6 (radius: 5)
[03:14:17 -161957.368249] SLOW spr round 7 (radius: 10)
[03:18:25 -161957.368164] SLOW spr round 8 (radius: 15)
[03:22:23] [worker #2] ML tree search #8, logLikelihood: -161948.953634
[03:24:59 -161957.368079] SLOW spr round 9 (radius: 20)
[03:27:48] [worker #1] ML tree search #7, logLikelihood: -161924.614070
[03:31:22] [worker #4] ML tree search #10, logLikelihood: -161932.721352
[03:34:02 -161957.367993] SLOW spr round 10 (radius: 25)
[03:42:51] [worker #3] ML tree search #9, logLikelihood: -161950.859321
[03:44:37 -161957.367905] Model parameter optimization (eps = 0.100000)

[03:44:56] [worker #0] ML tree search #6, logLikelihood: -161956.943027

[03:44:56 -667335.410080] Initial branch length optimization
[03:45:10 -547852.128716] Model parameter optimization (eps = 10.000000)
[03:46:32 -544771.443844] AUTODETECT spr round 1 (radius: 5)
[03:51:33 -365257.530658] AUTODETECT spr round 2 (radius: 10)
[03:56:44 -277249.428393] AUTODETECT spr round 3 (radius: 15)
[04:02:21 -235221.407387] AUTODETECT spr round 4 (radius: 20)
[04:08:06 -203240.951561] AUTODETECT spr round 5 (radius: 25)
[04:14:30 -196124.676121] SPR radius for FAST iterations: 25 (autodetect)
[04:14:30 -196124.676121] Model parameter optimization (eps = 3.000000)
[04:15:24 -195431.368070] FAST spr round 1 (radius: 25)
[04:20:59 -163147.857360] FAST spr round 2 (radius: 25)
[04:25:03 -162080.677196] FAST spr round 3 (radius: 25)
[04:28:37 -162008.582787] FAST spr round 4 (radius: 25)
[04:31:37 -162006.239182] FAST spr round 5 (radius: 25)
[04:34:29 -162006.214587] Model parameter optimization (eps = 1.000000)
[04:34:47 -162004.796827] SLOW spr round 1 (radius: 5)
[04:39:18 -161957.136154] SLOW spr round 2 (radius: 5)
[04:43:34 -161946.046682] SLOW spr round 3 (radius: 5)
[04:47:29 -161946.043295] SLOW spr round 4 (radius: 10)
[04:51:32 -161946.041449] SLOW spr round 5 (radius: 15)
[04:58:37 -161946.040323] SLOW spr round 6 (radius: 20)
[05:08:05 -161946.039743] SLOW spr round 7 (radius: 25)
[05:14:38] [worker #4] ML tree search #15, logLikelihood: -161948.636881
[05:19:19 -161946.039481] Model parameter optimization (eps = 0.100000)

[05:19:28] [worker #0] ML tree search #11, logLikelihood: -161945.942197

[05:19:28 -656963.415399] Initial branch length optimization
[05:19:38 -542629.090615] Model parameter optimization (eps = 10.000000)
[05:20:49 -539807.824744] AUTODETECT spr round 1 (radius: 5)
[05:25:40 -363012.275342] AUTODETECT spr round 2 (radius: 10)
[05:25:49] [worker #2] ML tree search #13, logLikelihood: -161946.403459
[05:30:47 -277893.916987] AUTODETECT spr round 3 (radius: 15)
[05:31:38] [worker #1] ML tree search #12, logLikelihood: -161957.610185
[05:36:27 -242200.681884] AUTODETECT spr round 4 (radius: 20)
[05:43:10 -216818.543294] AUTODETECT spr round 5 (radius: 25)
[05:49:38] [worker #3] ML tree search #14, logLikelihood: -161965.529604
[05:50:13 -199976.914879] SPR radius for FAST iterations: 25 (autodetect)
[05:50:13 -199976.914879] Model parameter optimization (eps = 3.000000)
[05:50:59 -199228.868379] FAST spr round 1 (radius: 25)
[05:56:52 -163761.322660] FAST spr round 2 (radius: 25)
[06:00:56 -162140.917240] FAST spr round 3 (radius: 25)
[06:04:16 -162042.788814] FAST spr round 4 (radius: 25)
[06:07:20 -162027.433512] FAST spr round 5 (radius: 25)
[06:10:09 -162027.433038] Model parameter optimization (eps = 1.000000)
[06:10:33 -162018.081057] SLOW spr round 1 (radius: 5)
[06:14:53 -161974.061901] SLOW spr round 2 (radius: 5)
[06:19:01 -161952.114158] SLOW spr round 3 (radius: 5)
[06:22:54 -161951.663288] SLOW spr round 4 (radius: 5)
[06:26:47 -161948.665863] SLOW spr round 5 (radius: 5)
[06:30:38 -161948.665815] SLOW spr round 6 (radius: 10)
[06:34:41 -161948.665772] SLOW spr round 7 (radius: 15)
[06:41:32 -161948.665728] SLOW spr round 8 (radius: 20)
[06:50:47 -161948.665683] SLOW spr round 9 (radius: 25)
[07:02:00 -161948.665636] Model parameter optimization (eps = 0.100000)

[07:02:10] [worker #0] ML tree search #16, logLikelihood: -161948.584994

[07:06:16] [worker #4] ML tree search #20, logLikelihood: -161960.827255
[07:13:07] [worker #2] ML tree search #18, logLikelihood: -161948.950472
[07:25:17] [worker #1] ML tree search #17, logLikelihood: -161942.826351
[07:33:13] [worker #3] ML tree search #19, logLikelihood: -161945.484777

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.206991,0.540126) (0.270379,1.404216) (0.432996,0.719895) (0.089634,2.195781) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -161924.614070

AIC score: 327859.228141 / AICc score: 8371919.228141 / BIC score: 335559.714664
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=344).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75907/3_mltree/O75907.raxml.log

Analysis started: 09-Jul-2021 05:24:15 / finished: 09-Jul-2021 12:57:29

Elapsed time: 27193.339 seconds