RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM

RAxML-NG was called at 30-Jun-2021 17:36:20 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/2_msa/O75800_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/2_msa/O75800_trimmed_msa.fasta
[00:00:00] Loaded alignment with 772 taxa and 28 sites

WARNING: Sequences tr_E9G2G1_E9G2G1_DAPPU_6669 and tr_A0A162P8W3_A0A162P8W3_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_E9H0L0_E9H0L0_DAPPU_6669 and tr_A0A164XE56_A0A164XE56_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_A0A1D5PIV6_A0A1D5PIV6_CHICK_9031 and tr_G1MRR7_G1MRR7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_Q4Q8L9_Q4Q8L9_LEIMA_5664 and tr_A4HG91_A4HG91_LEIBR_5660 are exactly identical!
WARNING: Sequences tr_Q4Q8L9_Q4Q8L9_LEIMA_5664 and tr_A4I3C5_A4I3C5_LEIIN_5671 are exactly identical!
WARNING: Sequences sp_Q9VU41_ZMY10_DROME_7227 and tr_B4HGN7_B4HGN7_DROSE_7238 are exactly identical!
WARNING: Sequences tr_E3RG26_E3RG26_PYRTT_861557 and tr_E3S4E6_E3S4E6_PYRTT_861557 are exactly identical!
WARNING: Sequences tr_B6QHN2_B6QHN2_TALMQ_441960 and tr_A0A093V0H3_A0A093V0H3_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_D8QNP7_D8QNP7_SELML_88036 and tr_D8RDY2_D8RDY2_SELML_88036 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_G2HJN8_G2HJN8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and sp_O75800_ZMY10_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_F7DJV1_F7DJV1_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_G7NXS4_G7NXS4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_A0A096NDA6_A0A096NDA6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_A0A0D9RNZ8_A0A0D9RNZ8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_A0A2K5KIB8_A0A2K5KIB8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_A0A2K6DKS8_A0A2K6DKS8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_A0A2K5ZJE4_A0A2K5ZJE4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3QW15_G3QW15_GORGO_9595 and tr_A0A2R9AMK6_A0A2R9AMK6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_H2N3E5_H2N3E5_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_K7C5B9_K7C5B9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_H0XNR2_H0XNR2_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and sp_Q9GZT9_EGLN1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_F7BR59_F7BR59_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_F6TN62_F6TN62_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_A0A096NFY5_A0A096NFY5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_A0A0D9RD30_A0A0D9RD30_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_A0A2K5NNC9_A0A2K5NNC9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3SCV8_G3SCV8_GORGO_9595 and tr_A0A2K6DHY0_A0A2K6DHY0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G2X179_G2X179_VERDV_498257 and tr_C9SD27_C9SD27_VERA1_526221 are exactly identical!
WARNING: Sequences tr_B8NAE9_B8NAE9_ASPFN_332952 and tr_A0A0F0I4Q5_A0A0F0I4Q5_ASPPU_1403190 are exactly identical!
WARNING: Sequences tr_B8NAE9_B8NAE9_ASPFN_332952 and tr_A0A1S9DCA5_A0A1S9DCA5_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A179V4I4_A0A179V4I4_BLAGS_559298 and tr_A0A179U8A0_A0A179U8A0_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_G3N3D8_G3N3D8_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_M3WV78_M3WV78_FELCA_9685 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A1S3AP74_A0A1S3AP74_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A2U3UYG0_A0A2U3UYG0_TURTR_9739 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A2U3W9F4_A0A2U3W9F4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A2Y9DE18_A0A2Y9DE18_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A2Y9L6Z4_A0A2Y9L6Z4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A2Y9LHE3_A0A2Y9LHE3_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F6XVI0_F6XVI0_MONDO_13616 and tr_A0A2Y9FNN4_A0A2Y9FNN4_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_B0X4Y0_B0X4Y0_CULQU_7176 and tr_Q17N05_Q17N05_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_I3MR49_I3MR49_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_D2HES4_D2HES4_AILME_9646 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_E1BD65_E1BD65_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_M3VXP9_M3VXP9_FELCA_9685 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_A0A2U3VV93_A0A2U3VV93_ODORO_9708 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_A0A2Y9D6A1_A0A2Y9D6A1_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_A0A2Y9EZP1_A0A2Y9EZP1_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_A0A384D4H1_A0A384D4H1_URSMA_29073 are exactly identical!
WARNING: Sequences tr_W5PIJ9_W5PIJ9_SHEEP_9940 and tr_A0A383Z0T3_A0A383Z0T3_BALAS_310752 are exactly identical!
WARNING: Sequences tr_F9G167_F9G167_FUSOF_660025 and tr_A0A0D2XI31_A0A0D2XI31_FUSO4_426428 are exactly identical!
WARNING: Sequences tr_F9G167_F9G167_FUSOF_660025 and tr_N4U7C7_N4U7C7_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9G167_F9G167_FUSOF_660025 and tr_X0CVP8_X0CVP8_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9G167_F9G167_FUSOF_660025 and tr_A0A2H3TEL2_A0A2H3TEL2_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9G167_F9G167_FUSOF_660025 and tr_A0A2H3GRZ5_A0A2H3GRZ5_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_A0A0B2XHW9_A0A0B2XHW9_METRA_655844 and tr_A0A0D9P8V9_A0A0D9P8V9_METAN_1291518 are exactly identical!
WARNING: Sequences tr_E9F3N9_E9F3N9_METRA_655844 and tr_A0A0D9NVN0_A0A0D9NVN0_METAN_1291518 are exactly identical!
WARNING: Sequences tr_M4AR50_M4AR50_XIPMA_8083 and tr_A0A087YBF4_A0A087YBF4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A087ZR45_A0A087ZR45_APIME_7460 and tr_A0A0N0BK30_A0A0N0BK30_9HYME_166423 are exactly identical!
WARNING: Sequences tr_A0A087ZR45_A0A087ZR45_APIME_7460 and tr_A0A0L7QLE2_A0A0L7QLE2_9HYME_597456 are exactly identical!
WARNING: Sequences tr_A0A087ZR45_A0A087ZR45_APIME_7460 and tr_A0A2A3E948_A0A2A3E948_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A088AQF5_A0A088AQF5_APIME_7460 and tr_A0A2A3EBA7_A0A2A3EBA7_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NC76_A0A158NC76_ATTCE_12957 and tr_F4WYW3_F4WYW3_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NC76_A0A158NC76_ATTCE_12957 and tr_A0A151WFF5_A0A151WFF5_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NC76_A0A158NC76_ATTCE_12957 and tr_A0A195EAE6_A0A195EAE6_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NC76_A0A158NC76_ATTCE_12957 and tr_A0A195F9Q9_A0A195F9Q9_9HYME_34720 are exactly identical!
WARNING: Sequences tr_H0UZB5_H0UZB5_CAVPO_10141 and tr_G5BZS8_G5BZS8_HETGA_10181 are exactly identical!
WARNING: Sequences tr_J3LBA5_J3LBA5_ORYBR_4533 and tr_I1HZ67_I1HZ67_BRADI_15368 are exactly identical!
WARNING: Sequences tr_J3LBA5_J3LBA5_ORYBR_4533 and tr_M8A3R4_M8A3R4_TRIUA_4572 are exactly identical!
WARNING: Sequences tr_J3LBA5_J3LBA5_ORYBR_4533 and tr_A0A3B6NPX8_A0A3B6NPX8_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_J3LBA5_J3LBA5_ORYBR_4533 and tr_A0A3B6PNB1_A0A3B6PNB1_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_J3LBA5_J3LBA5_ORYBR_4533 and tr_A0A3B6QGX2_A0A3B6QGX2_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A212FEH7_A0A212FEH7_DANPL_278856 and tr_A0A0L7LD54_A0A0L7LD54_9NEOP_104452 are exactly identical!
WARNING: Sequences tr_A0A212FEH7_A0A212FEH7_DANPL_278856 and tr_A0A0N1INA2_A0A0N1INA2_PAPMA_76193 are exactly identical!
WARNING: Sequences tr_A0A212FEH7_A0A212FEH7_DANPL_278856 and tr_A0A194PX60_A0A194PX60_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A139W8N7_A0A139W8N7_TRICA_7070 and tr_A0A067RKZ9_A0A067RKZ9_ZOONE_136037 are exactly identical!
WARNING: Sequences tr_A0A139W8N7_A0A139W8N7_TRICA_7070 and tr_A0A2J7RRC6_A0A2J7RRC6_9NEOP_105785 are exactly identical!
WARNING: Sequences tr_H0Z2M1_H0Z2M1_TAEGU_59729 and tr_A0A091ENM0_A0A091ENM0_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0Z2M1_H0Z2M1_TAEGU_59729 and tr_A0A093PE52_A0A093PE52_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F9WW57_F9WW57_ZYMTI_336722 and tr_A0A0F4GGL4_A0A0F4GGL4_9PEZI_1047168 are exactly identical!
WARNING: Sequences tr_F9XGA5_F9XGA5_ZYMTI_336722 and tr_A0A1X7RZF0_A0A1X7RZF0_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_F6VX10_F6VX10_XENTR_8364 and tr_A0A1L8GPB4_A0A1L8GPB4_XENLA_8355 are exactly identical!
WARNING: Sequences tr_W7LMF3_W7LMF3_GIBM7_334819 and tr_A0A2K0VZ57_A0A2K0VZ57_GIBNY_42673 are exactly identical!
WARNING: Sequences tr_M0RMP7_M0RMP7_MUSAM_214687 and tr_M0TIT9_M0TIT9_MUSAM_214687 are exactly identical!
WARNING: Sequences tr_R1BCY5_R1BCY5_EMIHU_2903 and tr_R1ENK2_R1ENK2_EMIHU_2903 are exactly identical!
WARNING: Sequences tr_R1BCY5_R1BCY5_EMIHU_2903 and tr_R1EXM1_R1EXM1_EMIHU_2903 are exactly identical!
WARNING: Sequences tr_S0E4X0_S0E4X0_GIBF5_1279085 and tr_A0A365NEN3_A0A365NEN3_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_V2X0R0_V2X0R0_MONRO_1381753 and tr_A0A0W0F557_A0A0W0F557_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_W5L8Q8_W5L8Q8_ASTMX_7994 and tr_A0A2D0RZD3_A0A2D0RZD3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_W2Q1P9_W2Q1P9_PHYPN_761204 and tr_A0A0W8AYY9_A0A0W8AYY9_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2Q1P9_W2Q1P9_PHYPN_761204 and tr_W2KZ45_W2KZ45_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A015JNI5_A0A015JNI5_9GLOM_1432141 and tr_A0A2H5S9L7_A0A2H5S9L7_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A015KPV6_A0A015KPV6_9GLOM_1432141 and tr_A0A2H5SL73_A0A2H5SL73_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A015L412_A0A015L412_9GLOM_1432141 and tr_A0A2H5TC01_A0A2H5TC01_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A015L412_A0A015L412_9GLOM_1432141 and tr_A0A2Z6S6B3_A0A2Z6S6B3_9GLOM_94130 are exactly identical!
WARNING: Sequences tr_A0A015M8K3_A0A015M8K3_9GLOM_1432141 and tr_A0A2H5RK43_A0A2H5RK43_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A067CCM8_A0A067CCM8_SAPPC_695850 and tr_T0S6J2_T0S6J2_9STRA_1156394 are exactly identical!
WARNING: Sequences tr_A0A067CCM8_A0A067CCM8_SAPPC_695850 and tr_A0A1V9YXT4_A0A1V9YXT4_9STRA_1202772 are exactly identical!
WARNING: Sequences tr_A0A067CXE4_A0A067CXE4_SAPPC_695850 and tr_T0R9R3_T0R9R3_9STRA_1156394 are exactly identical!
WARNING: Sequences tr_A0A067CXE4_A0A067CXE4_SAPPC_695850 and tr_A0A1V9YRF1_A0A1V9YRF1_9STRA_1202772 are exactly identical!
WARNING: Sequences tr_A0A151MEK3_A0A151MEK3_ALLMI_8496 and tr_A0A3Q0GPI9_A0A3Q0GPI9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A0N0U693_A0A0N0U693_9HYME_166423 and tr_A0A0L7QK47_A0A0L7QK47_9HYME_597456 are exactly identical!
WARNING: Sequences tr_A0A091J6Z7_A0A091J6Z7_EGRGA_188379 and tr_A0A091USZ4_A0A091USZ4_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091J6Z7_A0A091J6Z7_EGRGA_188379 and tr_A0A087R0G9_A0A087R0G9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091J6Z7_A0A091J6Z7_EGRGA_188379 and tr_A0A091GJ13_A0A091GJ13_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A194RNF0_A0A194RNF0_PAPMA_76193 and tr_A0A194QHS6_A0A194QHS6_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A093HVQ9_A0A093HVQ9_STRCA_441894 and tr_A0A091I8E1_A0A091I8E1_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A0C9XN55_A0A0C9XN55_9HOMO_765257 and tr_A0A0C9Z9A9_A0A0C9Z9A9_9HOMO_765257 are exactly identical!
WARNING: Sequences tr_A0A0C9YAH7_A0A0C9YAH7_9HOMO_765257 and tr_A0A0C9YR06_A0A0C9YR06_9HOMO_765257 are exactly identical!
WARNING: Sequences tr_A0A0L0RVY0_A0A0L0RVY0_ALLMA_578462 and tr_A0A0L0SRN7_A0A0L0SRN7_ALLMA_578462 are exactly identical!
WARNING: Sequences tr_A0A164YTP7_A0A164YTP7_9HOMO_1314777 and tr_A0A166AGX4_A0A166AGX4_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A1S3J888_A0A1S3J888_LINUN_7574 and tr_A0A1S3K6H8_A0A1S3K6H8_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1D1US41_A0A1D1US41_RAMVA_947166 and tr_A0A1D1V241_A0A1D1V241_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1U8N0C2_A0A1U8N0C2_GOSHI_3635 and tr_A0A1U8N4T0_A0A1U8N4T0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A226MZC3_A0A226MZC3_CALSU_9009 and tr_A0A226P0G7_A0A226P0G7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2H3AHQ9_A0A2H3AHQ9_9AGAR_1076256 and tr_A0A2H3ALM2_A0A2H3ALM2_9AGAR_1076256 are exactly identical!
WARNING: Sequences tr_A0A2H3F2G6_A0A2H3F2G6_9HELO_946125 and tr_A0A2H3FNW2_A0A2H3FNW2_9HELO_946125 are exactly identical!
WARNING: Sequences tr_A0A2G8KJ44_A0A2G8KJ44_STIJA_307972 and tr_A0A2G8L7Q0_A0A2G8L7Q0_STIJA_307972 are exactly identical!
WARNING: Sequences tr_A0A2J6T6S7_A0A2J6T6S7_9HELO_1095630 and tr_A0A2J6RS09_A0A2J6RS09_9HELO_1149755 are exactly identical!
WARNING: Sequences tr_A0A2P6MPP1_A0A2P6MPP1_9MYCE_1890364 and tr_A0A2P6N1P0_A0A2P6N1P0_9MYCE_1890364 are exactly identical!
WARNING: Duplicate sequences found: 122

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.reduced.phy

Alignment comprises 1 partitions and 28 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 28 / 28
Gaps: 3.78 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 772 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 28 / 2240
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -33393.201141] Initial branch length optimization
[00:00:00 -28398.943707] Model parameter optimization (eps = 10.000000)
[00:00:14 -28282.230033] AUTODETECT spr round 1 (radius: 5)
[00:00:53 -23595.971916] AUTODETECT spr round 2 (radius: 10)
[00:01:36 -20228.902476] AUTODETECT spr round 3 (radius: 15)
[00:02:26 -18848.862958] AUTODETECT spr round 4 (radius: 20)
[00:03:29 -17612.229394] AUTODETECT spr round 5 (radius: 25)
[00:04:47 -16977.173221] SPR radius for FAST iterations: 25 (autodetect)
[00:04:47 -16977.173221] Model parameter optimization (eps = 3.000000)
[00:04:54 -16973.270957] FAST spr round 1 (radius: 25)
[00:06:00 -15629.921499] FAST spr round 2 (radius: 25)
[00:06:55 -15512.548803] FAST spr round 3 (radius: 25)
[00:07:45 -15483.418850] FAST spr round 4 (radius: 25)
[00:08:33 -15475.994362] FAST spr round 5 (radius: 25)
[00:09:16 -15475.993390] Model parameter optimization (eps = 1.000000)
[00:09:20 -15475.331100] SLOW spr round 1 (radius: 5)
[00:10:19 -15470.987367] SLOW spr round 2 (radius: 5)
[00:11:18 -15470.956487] SLOW spr round 3 (radius: 10)
[00:12:16 -15470.550827] SLOW spr round 4 (radius: 5)
[00:13:32 -15470.537827] SLOW spr round 5 (radius: 10)
[00:14:37 -15469.283642] SLOW spr round 6 (radius: 5)
[00:15:50 -15469.039919] SLOW spr round 7 (radius: 5)
[00:16:53 -15469.039771] SLOW spr round 8 (radius: 10)
[00:17:51 -15469.039648] SLOW spr round 9 (radius: 15)
[00:19:40 -15465.867960] SLOW spr round 10 (radius: 5)
[00:21:01 -15465.706048] SLOW spr round 11 (radius: 5)
[00:22:07 -15465.700815] SLOW spr round 12 (radius: 10)
[00:23:07 -15465.700798] SLOW spr round 13 (radius: 15)
[00:24:58 -15465.700781] SLOW spr round 14 (radius: 20)
[00:28:09 -15427.175089] SLOW spr round 15 (radius: 5)
[00:29:36 -15378.351710] SLOW spr round 16 (radius: 5)
[00:30:51 -15311.030528] SLOW spr round 17 (radius: 5)
[00:31:58 -15281.091109] SLOW spr round 18 (radius: 5)
[00:32:58 -15281.091032] SLOW spr round 19 (radius: 10)
[00:34:04 -15276.241269] SLOW spr round 20 (radius: 5)
[00:35:30 -15274.947235] SLOW spr round 21 (radius: 5)
[00:36:42 -15274.946438] SLOW spr round 22 (radius: 10)
[00:37:47 -15274.517904] SLOW spr round 23 (radius: 5)
[00:39:11 -15274.516667] SLOW spr round 24 (radius: 10)
[00:40:20 -15274.516572] SLOW spr round 25 (radius: 15)
[00:42:18 -15272.824637] SLOW spr round 26 (radius: 5)
[00:43:47 -15272.142436] SLOW spr round 27 (radius: 5)
[00:44:59 -15272.142191] SLOW spr round 28 (radius: 10)
[00:46:03 -15272.142165] SLOW spr round 29 (radius: 15)
[00:48:10 -15270.876674] SLOW spr round 30 (radius: 5)
[00:49:39 -15270.736837] SLOW spr round 31 (radius: 5)
[00:50:52 -15270.736408] SLOW spr round 32 (radius: 10)
[00:51:58 -15270.736373] SLOW spr round 33 (radius: 15)
[00:54:08 -15269.730230] SLOW spr round 34 (radius: 5)
[00:55:34 -15269.730202] SLOW spr round 35 (radius: 10)
[00:56:48 -15269.730188] SLOW spr round 36 (radius: 15)
[00:58:48 -15269.730174] SLOW spr round 37 (radius: 20)
[01:02:24 -15265.412843] SLOW spr round 38 (radius: 5)
[01:04:01 -15259.187308] SLOW spr round 39 (radius: 5)
[01:05:17 -15258.017483] SLOW spr round 40 (radius: 5)
[01:06:23 -15258.017088] SLOW spr round 41 (radius: 10)
[01:07:27 -15257.841981] SLOW spr round 42 (radius: 5)
[01:08:51 -15257.841866] SLOW spr round 43 (radius: 10)
[01:10:02 -15257.841820] SLOW spr round 44 (radius: 15)
[01:12:05 -15257.841788] SLOW spr round 45 (radius: 20)
[01:15:36 -15257.525203] SLOW spr round 46 (radius: 5)
[01:17:08 -15256.121163] SLOW spr round 47 (radius: 5)
[01:18:22 -15256.120807] SLOW spr round 48 (radius: 10)
[01:19:30 -15255.399372] SLOW spr round 49 (radius: 5)
[01:20:54 -15254.847367] SLOW spr round 50 (radius: 5)
[01:22:04 -15254.845404] SLOW spr round 51 (radius: 10)
[01:23:08 -15254.844597] SLOW spr round 52 (radius: 15)
[01:25:18 -15254.844269] SLOW spr round 53 (radius: 20)
[01:28:45 -15254.386339] SLOW spr round 54 (radius: 5)
[01:30:15 -15254.375341] SLOW spr round 55 (radius: 10)
[01:31:32 -15254.375224] SLOW spr round 56 (radius: 15)
[01:33:33 -15254.375208] SLOW spr round 57 (radius: 20)
[01:37:06 -15254.287565] SLOW spr round 58 (radius: 25)
[01:41:05 -15251.867711] SLOW spr round 59 (radius: 5)
[01:42:37 -15249.274465] SLOW spr round 60 (radius: 5)
[01:43:52 -15249.262860] SLOW spr round 61 (radius: 10)
[01:44:59 -15249.164144] SLOW spr round 62 (radius: 15)
[01:47:12 -15244.701038] SLOW spr round 63 (radius: 5)
[01:48:41 -15244.564961] SLOW spr round 64 (radius: 5)
[01:49:52 -15244.564632] SLOW spr round 65 (radius: 10)
[01:50:58 -15244.564569] SLOW spr round 66 (radius: 15)
[01:53:06 -15244.564549] SLOW spr round 67 (radius: 20)
[01:56:38 -15241.916971] SLOW spr round 68 (radius: 5)
[01:58:07 -15241.892511] SLOW spr round 69 (radius: 10)
[01:59:24 -15241.892453] SLOW spr round 70 (radius: 15)
[02:01:25 -15241.892427] SLOW spr round 71 (radius: 20)
[02:04:59 -15241.892408] SLOW spr round 72 (radius: 25)
[02:08:49 -15241.260340] SLOW spr round 73 (radius: 5)
[02:10:19 -15240.885616] SLOW spr round 74 (radius: 5)
[02:11:33 -15240.885571] SLOW spr round 75 (radius: 10)
[02:12:40 -15240.885557] SLOW spr round 76 (radius: 15)
[02:14:51 -15240.885546] SLOW spr round 77 (radius: 20)
[02:18:16 -15240.885535] SLOW spr round 78 (radius: 25)
[02:22:03 -15240.506651] SLOW spr round 79 (radius: 5)
[02:23:36 -15239.565849] SLOW spr round 80 (radius: 5)
[02:24:51 -15239.565656] SLOW spr round 81 (radius: 10)
[02:25:58 -15239.565642] SLOW spr round 82 (radius: 15)
[02:28:05 -15239.565631] SLOW spr round 83 (radius: 20)
[02:31:35 -15238.620809] SLOW spr round 84 (radius: 5)
[02:33:02 -15238.522541] SLOW spr round 85 (radius: 10)
[02:34:17 -15238.522249] SLOW spr round 86 (radius: 15)
[02:36:20 -15238.522215] SLOW spr round 87 (radius: 20)
[02:39:58 -15238.522204] SLOW spr round 88 (radius: 25)
[02:43:46 -15238.153571] SLOW spr round 89 (radius: 5)
[02:45:13 -15238.153557] SLOW spr round 90 (radius: 10)
[02:46:29 -15238.153547] SLOW spr round 91 (radius: 15)
[02:48:27 -15238.153536] SLOW spr round 92 (radius: 20)
[02:51:56 -15238.153525] SLOW spr round 93 (radius: 25)
[02:55:42 -15238.153514] Model parameter optimization (eps = 0.100000)

[02:55:47] ML tree search #1, logLikelihood: -15237.532633

[02:55:47 -33447.266082] Initial branch length optimization
[02:55:48 -28305.909193] Model parameter optimization (eps = 10.000000)
[02:55:58 -28238.681050] AUTODETECT spr round 1 (radius: 5)
[02:56:37 -23635.725712] AUTODETECT spr round 2 (radius: 10)
[02:57:35 -19630.727005] AUTODETECT spr round 3 (radius: 15)
[02:58:30 -18008.556241] AUTODETECT spr round 4 (radius: 20)
[02:59:39 -17366.677411] AUTODETECT spr round 5 (radius: 25)
[03:00:50 -16920.288987] SPR radius for FAST iterations: 25 (autodetect)
[03:00:50 -16920.288987] Model parameter optimization (eps = 3.000000)
[03:00:54 -16917.948606] FAST spr round 1 (radius: 25)
[03:02:00 -15742.401295] FAST spr round 2 (radius: 25)
[03:02:52 -15623.327587] FAST spr round 3 (radius: 25)
[03:03:39 -15606.549656] FAST spr round 4 (radius: 25)
[03:04:25 -15602.066949] FAST spr round 5 (radius: 25)
[03:05:08 -15600.608669] FAST spr round 6 (radius: 25)
[03:05:48 -15600.608594] Model parameter optimization (eps = 1.000000)
[03:05:52 -15599.715138] SLOW spr round 1 (radius: 5)
[03:06:47 -15594.407870] SLOW spr round 2 (radius: 5)
[03:07:42 -15594.080996] SLOW spr round 3 (radius: 5)
[03:08:36 -15593.825405] SLOW spr round 4 (radius: 5)
[03:09:28 -15593.825319] SLOW spr round 5 (radius: 10)
[03:10:24 -15589.691334] SLOW spr round 6 (radius: 5)
[03:11:35 -15589.690672] SLOW spr round 7 (radius: 10)
[03:12:37 -15588.947012] SLOW spr round 8 (radius: 5)
[03:13:48 -15588.946955] SLOW spr round 9 (radius: 10)
[03:14:49 -15588.946929] SLOW spr round 10 (radius: 15)
[03:16:27 -15582.781151] SLOW spr round 11 (radius: 5)
[03:17:47 -15578.512553] SLOW spr round 12 (radius: 5)
[03:18:54 -15578.373355] SLOW spr round 13 (radius: 5)
[03:19:53 -15578.373290] SLOW spr round 14 (radius: 10)
[03:20:49 -15578.373270] SLOW spr round 15 (radius: 15)
[03:22:27 -15571.900209] SLOW spr round 16 (radius: 5)
[03:23:41 -15571.899594] SLOW spr round 17 (radius: 10)
[03:24:45 -15566.269989] SLOW spr round 18 (radius: 5)
[03:25:57 -15565.355714] SLOW spr round 19 (radius: 5)
[03:26:58 -15565.355195] SLOW spr round 20 (radius: 10)
[03:27:54 -15565.355178] SLOW spr round 21 (radius: 15)
[03:29:27 -15565.217543] SLOW spr round 22 (radius: 5)
[03:30:41 -15565.217268] SLOW spr round 23 (radius: 10)
[03:31:43 -15565.217252] SLOW spr round 24 (radius: 15)
[03:33:12 -15565.217240] SLOW spr round 25 (radius: 20)
[03:35:12 -15564.979673] SLOW spr round 26 (radius: 5)
[03:36:30 -15564.978688] SLOW spr round 27 (radius: 10)
[03:37:35 -15564.978611] SLOW spr round 28 (radius: 15)
[03:39:06 -15564.978581] SLOW spr round 29 (radius: 20)
[03:41:09 -15564.978564] SLOW spr round 30 (radius: 25)
[03:43:40 -15535.400393] SLOW spr round 31 (radius: 5)
[03:45:01 -15502.975791] SLOW spr round 32 (radius: 5)
[03:46:12 -15501.967335] SLOW spr round 33 (radius: 5)
[03:47:13 -15501.965860] SLOW spr round 34 (radius: 10)
[03:48:11 -15501.965850] SLOW spr round 35 (radius: 15)
[03:49:57 -15501.965841] SLOW spr round 36 (radius: 20)
[03:52:14 -15500.825764] SLOW spr round 37 (radius: 5)
[03:53:34 -15498.682193] SLOW spr round 38 (radius: 5)
[03:54:42 -15498.682105] SLOW spr round 39 (radius: 10)
[03:55:42 -15497.913226] SLOW spr round 40 (radius: 5)
[03:57:00 -15497.410251] SLOW spr round 41 (radius: 5)
[03:58:05 -15497.360611] SLOW spr round 42 (radius: 10)
[03:59:05 -15497.360584] SLOW spr round 43 (radius: 15)
[04:00:54 -15493.627669] SLOW spr round 44 (radius: 5)
[04:02:15 -15491.557745] SLOW spr round 45 (radius: 5)
[04:03:23 -15491.555783] SLOW spr round 46 (radius: 10)
[04:04:23 -15491.555673] SLOW spr round 47 (radius: 15)
[04:06:05 -15489.075991] SLOW spr round 48 (radius: 5)
[04:07:25 -15488.951342] SLOW spr round 49 (radius: 5)
[04:08:32 -15488.951042] SLOW spr round 50 (radius: 10)
[04:09:31 -15488.950924] SLOW spr round 51 (radius: 15)
[04:11:11 -15488.950859] SLOW spr round 52 (radius: 20)
[04:13:26 -15488.240870] SLOW spr round 53 (radius: 5)
[04:14:46 -15487.775790] SLOW spr round 54 (radius: 5)
[04:15:53 -15487.774488] SLOW spr round 55 (radius: 10)
[04:16:52 -15487.774371] SLOW spr round 56 (radius: 15)
[04:18:32 -15487.774354] SLOW spr round 57 (radius: 20)
[04:20:48 -15487.774345] SLOW spr round 58 (radius: 25)
[04:23:36 -15480.693861] SLOW spr round 59 (radius: 5)
[04:25:01 -15480.533634] SLOW spr round 60 (radius: 5)
[04:26:11 -15480.533128] SLOW spr round 61 (radius: 10)
[04:27:13 -15480.533048] SLOW spr round 62 (radius: 15)
[04:29:07 -15473.760014] SLOW spr round 63 (radius: 5)
[04:30:32 -15471.411669] SLOW spr round 64 (radius: 5)
[04:31:42 -15471.155529] SLOW spr round 65 (radius: 5)
[04:32:47 -15469.484108] SLOW spr round 66 (radius: 5)
[04:33:46 -15469.483082] SLOW spr round 67 (radius: 10)
[04:34:45 -15468.076936] SLOW spr round 68 (radius: 5)
[04:36:03 -15468.076898] SLOW spr round 69 (radius: 10)
[04:37:09 -15468.076894] SLOW spr round 70 (radius: 15)
[04:38:58 -15467.354241] SLOW spr round 71 (radius: 5)
[04:40:19 -15467.354183] SLOW spr round 72 (radius: 10)
[04:41:26 -15467.354166] SLOW spr round 73 (radius: 15)
[04:43:16 -15467.354158] SLOW spr round 74 (radius: 20)
[04:46:16 -15430.011291] SLOW spr round 75 (radius: 5)
[04:47:42 -15429.323762] SLOW spr round 76 (radius: 5)
[04:48:53 -15429.323431] SLOW spr round 77 (radius: 10)
[04:49:55 -15429.323410] SLOW spr round 78 (radius: 15)
[04:51:54 -15429.242211] SLOW spr round 79 (radius: 20)
[04:54:52 -15429.240733] SLOW spr round 80 (radius: 25)
[04:58:12 -15390.905324] SLOW spr round 81 (radius: 5)
[04:59:40 -15375.028530] SLOW spr round 82 (radius: 5)
[05:00:51 -15374.860353] SLOW spr round 83 (radius: 5)
[05:01:54 -15374.860296] SLOW spr round 84 (radius: 10)
[05:02:55 -15374.367926] SLOW spr round 85 (radius: 5)
[05:04:15 -15371.305461] SLOW spr round 86 (radius: 5)
[05:05:24 -15370.889202] SLOW spr round 87 (radius: 5)
[05:06:26 -15370.885967] SLOW spr round 88 (radius: 10)
[05:07:26 -15370.885914] SLOW spr round 89 (radius: 15)
[05:09:31 -15369.513220] SLOW spr round 90 (radius: 5)
[05:10:55 -15369.233339] SLOW spr round 91 (radius: 5)
[05:12:06 -15369.232817] SLOW spr round 92 (radius: 10)
[05:13:08 -15369.232808] SLOW spr round 93 (radius: 15)
[05:15:09 -15369.232803] SLOW spr round 94 (radius: 20)
[05:18:09 -15369.102602] SLOW spr round 95 (radius: 5)
[05:19:34 -15369.032678] SLOW spr round 96 (radius: 10)
[05:20:43 -15369.031129] SLOW spr round 97 (radius: 15)
[05:22:34 -15369.031099] SLOW spr round 98 (radius: 20)
[05:25:31 -15369.031081] SLOW spr round 99 (radius: 25)
[05:28:51 -15369.018780] Model parameter optimization (eps = 0.100000)

[05:28:56] ML tree search #2, logLikelihood: -15368.373946

[05:28:56 -33518.414291] Initial branch length optimization
[05:28:57 -28317.518324] Model parameter optimization (eps = 10.000000)
[05:29:05 -28246.972050] AUTODETECT spr round 1 (radius: 5)
[05:29:44 -23506.433386] AUTODETECT spr round 2 (radius: 10)
[05:30:38 -19662.896898] AUTODETECT spr round 3 (radius: 15)
[05:31:34 -18142.720955] AUTODETECT spr round 4 (radius: 20)
[05:32:44 -17383.776956] AUTODETECT spr round 5 (radius: 25)
[05:34:07 -16708.311451] SPR radius for FAST iterations: 25 (autodetect)
[05:34:07 -16708.311451] Model parameter optimization (eps = 3.000000)
[05:34:15 -16704.111852] FAST spr round 1 (radius: 25)
[05:35:33 -15418.153649] FAST spr round 2 (radius: 25)
[05:36:37 -15219.923054] FAST spr round 3 (radius: 25)
[05:37:27 -15211.633052] FAST spr round 4 (radius: 25)
[05:38:13 -15210.846908] FAST spr round 5 (radius: 25)
[05:38:56 -15210.833180] Model parameter optimization (eps = 1.000000)
[05:39:00 -15210.053706] SLOW spr round 1 (radius: 5)
[05:40:01 -15203.247078] SLOW spr round 2 (radius: 5)
[05:41:02 -15201.335754] SLOW spr round 3 (radius: 5)
[05:42:00 -15201.334502] SLOW spr round 4 (radius: 10)
[05:43:01 -15200.822990] SLOW spr round 5 (radius: 5)
[05:44:21 -15200.820699] SLOW spr round 6 (radius: 10)
[05:45:31 -15199.566261] SLOW spr round 7 (radius: 5)
[05:46:51 -15197.750926] SLOW spr round 8 (radius: 5)
[05:47:57 -15197.750604] SLOW spr round 9 (radius: 10)
[05:48:58 -15197.750422] SLOW spr round 10 (radius: 15)
[05:51:16 -15194.407375] SLOW spr round 11 (radius: 5)
[05:52:40 -15194.288921] SLOW spr round 12 (radius: 5)
[05:53:49 -15194.288498] SLOW spr round 13 (radius: 10)
[05:54:52 -15193.770841] SLOW spr round 14 (radius: 5)
[05:56:08 -15193.769967] SLOW spr round 15 (radius: 10)
[05:57:14 -15193.769894] SLOW spr round 16 (radius: 15)
[05:59:21 -15193.075684] SLOW spr round 17 (radius: 5)
[06:00:43 -15192.626992] SLOW spr round 18 (radius: 5)
[06:01:51 -15192.626243] SLOW spr round 19 (radius: 10)
[06:02:51 -15192.626179] SLOW spr round 20 (radius: 15)
[06:05:06 -15191.172226] SLOW spr round 21 (radius: 5)
[06:06:29 -15188.544931] SLOW spr round 22 (radius: 5)
[06:07:35 -15188.544390] SLOW spr round 23 (radius: 10)
[06:08:35 -15188.544347] SLOW spr round 24 (radius: 15)
[06:10:50 -15187.348711] SLOW spr round 25 (radius: 5)
[06:12:08 -15187.348624] SLOW spr round 26 (radius: 10)
[06:13:15 -15187.348580] SLOW spr round 27 (radius: 15)
[06:15:18 -15187.348537] SLOW spr round 28 (radius: 20)
[06:18:58 -15184.665044] SLOW spr round 29 (radius: 5)
[06:20:21 -15183.366411] SLOW spr round 30 (radius: 5)
[06:21:29 -15183.366300] SLOW spr round 31 (radius: 10)
[06:22:29 -15183.366291] SLOW spr round 32 (radius: 15)
[06:24:46 -15183.366286] SLOW spr round 33 (radius: 20)
[06:28:23 -15182.267124] SLOW spr round 34 (radius: 5)
[06:29:48 -15181.875420] SLOW spr round 35 (radius: 5)
[06:30:59 -15181.874530] SLOW spr round 36 (radius: 10)
[06:32:04 -15181.874021] SLOW spr round 37 (radius: 15)
[06:34:14 -15181.873766] SLOW spr round 38 (radius: 20)
[06:37:45 -15181.832238] SLOW spr round 39 (radius: 25)
[06:41:48 -15176.336934] SLOW spr round 40 (radius: 5)
[06:43:16 -15174.823294] SLOW spr round 41 (radius: 5)
[06:44:27 -15174.822873] SLOW spr round 42 (radius: 10)
[06:45:30 -15174.822771] SLOW spr round 43 (radius: 15)
[06:47:41 -15174.030990] SLOW spr round 44 (radius: 5)
[06:49:02 -15174.030189] SLOW spr round 45 (radius: 10)
[06:50:09 -15174.030159] SLOW spr round 46 (radius: 15)
[06:52:07 -15174.030153] SLOW spr round 47 (radius: 20)
[06:55:46 -15173.937073] SLOW spr round 48 (radius: 25)
[06:59:53 -15173.371640] SLOW spr round 49 (radius: 5)
[07:01:17 -15173.221180] SLOW spr round 50 (radius: 5)
[07:02:28 -15173.221098] SLOW spr round 51 (radius: 10)
[07:03:30 -15172.765760] SLOW spr round 52 (radius: 5)
[07:04:44 -15172.765459] SLOW spr round 53 (radius: 10)
[07:05:49 -15172.765454] SLOW spr round 54 (radius: 15)
[07:07:52 -15172.765451] SLOW spr round 55 (radius: 20)
[07:11:28 -15172.765448] SLOW spr round 56 (radius: 25)
[07:15:36 -15172.185583] SLOW spr round 57 (radius: 5)
[07:16:58 -15172.185205] SLOW spr round 58 (radius: 10)
[07:18:08 -15172.185197] SLOW spr round 59 (radius: 15)
[07:20:07 -15172.185194] SLOW spr round 60 (radius: 20)
[07:23:46 -15171.983659] SLOW spr round 61 (radius: 5)
[07:25:09 -15171.620790] SLOW spr round 62 (radius: 5)
[07:26:20 -15171.620296] SLOW spr round 63 (radius: 10)
[07:27:22 -15171.620286] SLOW spr round 64 (radius: 15)
[07:29:29 -15171.620283] SLOW spr round 65 (radius: 20)
[07:32:59 -15171.620280] SLOW spr round 66 (radius: 25)
[07:37:09 -15171.128700] SLOW spr round 67 (radius: 5)
[07:38:32 -15171.128633] SLOW spr round 68 (radius: 10)
[07:39:44 -15171.128631] SLOW spr round 69 (radius: 15)
[07:41:42 -15171.128628] SLOW spr round 70 (radius: 20)
[07:45:16 -15171.003549] SLOW spr round 71 (radius: 5)
[07:46:40 -15171.002225] SLOW spr round 72 (radius: 10)
[07:47:51 -15171.002176] SLOW spr round 73 (radius: 15)
[07:49:50 -15171.002171] SLOW spr round 74 (radius: 20)
[07:53:27 -15170.153334] SLOW spr round 75 (radius: 5)
[07:54:51 -15169.221276] SLOW spr round 76 (radius: 5)
[07:56:00 -15169.220730] SLOW spr round 77 (radius: 10)
[07:57:02 -15169.220725] SLOW spr round 78 (radius: 15)
[07:59:11 -15169.220724] SLOW spr round 79 (radius: 20)
[08:02:42 -15169.220724] SLOW spr round 80 (radius: 25)
[08:06:46 -15169.220724] Model parameter optimization (eps = 0.100000)

[08:06:52] ML tree search #3, logLikelihood: -15168.756004

[08:06:52 -33324.658442] Initial branch length optimization
[08:06:53 -28334.287746] Model parameter optimization (eps = 10.000000)
[08:07:02 -28283.972947] AUTODETECT spr round 1 (radius: 5)
[08:07:40 -23710.165614] AUTODETECT spr round 2 (radius: 10)
[08:08:32 -20243.988548] AUTODETECT spr round 3 (radius: 15)
[08:09:29 -17966.416892] AUTODETECT spr round 4 (radius: 20)
[08:10:41 -17326.226172] AUTODETECT spr round 5 (radius: 25)
[08:12:06 -16688.022143] SPR radius for FAST iterations: 25 (autodetect)
[08:12:06 -16688.022143] Model parameter optimization (eps = 3.000000)
[08:12:11 -16685.166330] FAST spr round 1 (radius: 25)
[08:13:23 -15593.967771] FAST spr round 2 (radius: 25)
[08:14:27 -15439.920016] FAST spr round 3 (radius: 25)
[08:15:25 -15376.417935] FAST spr round 4 (radius: 25)
[08:16:18 -15372.920496] FAST spr round 5 (radius: 25)
[08:17:04 -15371.547407] FAST spr round 6 (radius: 25)
[08:17:49 -15371.547009] Model parameter optimization (eps = 1.000000)
[08:17:56 -15369.739350] SLOW spr round 1 (radius: 5)
[08:18:56 -15365.549684] SLOW spr round 2 (radius: 5)
[08:19:57 -15365.464864] SLOW spr round 3 (radius: 10)
[08:21:00 -15361.659561] SLOW spr round 4 (radius: 5)
[08:22:26 -15360.749644] SLOW spr round 5 (radius: 5)
[08:23:37 -15360.171319] SLOW spr round 6 (radius: 5)
[08:24:42 -15360.170881] SLOW spr round 7 (radius: 10)
[08:25:44 -15360.045093] SLOW spr round 8 (radius: 5)
[08:27:06 -15360.044989] SLOW spr round 9 (radius: 10)
[08:28:15 -15360.044917] SLOW spr round 10 (radius: 15)
[08:30:06 -15346.455967] SLOW spr round 11 (radius: 5)
[08:31:33 -15342.075395] SLOW spr round 12 (radius: 5)
[08:32:47 -15341.999376] SLOW spr round 13 (radius: 10)
[08:33:52 -15341.993074] SLOW spr round 14 (radius: 15)
[08:35:50 -15340.042478] SLOW spr round 15 (radius: 5)
[08:37:16 -15340.029693] SLOW spr round 16 (radius: 10)
[08:38:28 -15340.014637] SLOW spr round 17 (radius: 15)
[08:40:17 -15340.014567] SLOW spr round 18 (radius: 20)
[08:43:20 -15333.803204] SLOW spr round 19 (radius: 5)
[08:44:51 -15331.832594] SLOW spr round 20 (radius: 5)
[08:46:07 -15331.832071] SLOW spr round 21 (radius: 10)
[08:47:12 -15331.832059] SLOW spr round 22 (radius: 15)
[08:49:02 -15331.832051] SLOW spr round 23 (radius: 20)
[08:51:56 -15331.769147] SLOW spr round 24 (radius: 25)
[08:55:36 -15331.264965] SLOW spr round 25 (radius: 5)
[08:57:10 -15330.191787] SLOW spr round 26 (radius: 5)
[08:58:29 -15329.136853] SLOW spr round 27 (radius: 5)
[08:59:35 -15329.136770] SLOW spr round 28 (radius: 10)
[09:00:38 -15329.136756] SLOW spr round 29 (radius: 15)
[09:02:32 -15329.136746] SLOW spr round 30 (radius: 20)
[09:05:22 -15329.136736] SLOW spr round 31 (radius: 25)
[09:09:04 -15329.136727] Model parameter optimization (eps = 0.100000)

[09:09:10] ML tree search #4, logLikelihood: -15328.823540

[09:09:11 -33337.288641] Initial branch length optimization
[09:09:11 -28309.116921] Model parameter optimization (eps = 10.000000)
[09:09:23 -28241.935798] AUTODETECT spr round 1 (radius: 5)
[09:10:03 -23584.615302] AUTODETECT spr round 2 (radius: 10)
[09:10:55 -19427.483114] AUTODETECT spr round 3 (radius: 15)
[09:11:51 -17653.591608] AUTODETECT spr round 4 (radius: 20)
[09:13:00 -16847.931396] AUTODETECT spr round 5 (radius: 25)
[09:14:15 -16687.297199] SPR radius for FAST iterations: 25 (autodetect)
[09:14:15 -16687.297199] Model parameter optimization (eps = 3.000000)
[09:14:25 -16676.685512] FAST spr round 1 (radius: 25)
[09:15:37 -15699.813635] FAST spr round 2 (radius: 25)
[09:16:39 -15590.912149] FAST spr round 3 (radius: 25)
[09:17:35 -15511.624039] FAST spr round 4 (radius: 25)
[09:18:28 -15464.332782] FAST spr round 5 (radius: 25)
[09:19:14 -15460.644089] FAST spr round 6 (radius: 25)
[09:19:58 -15460.268635] FAST spr round 7 (radius: 25)
[09:20:42 -15460.268342] Model parameter optimization (eps = 1.000000)
[09:20:47 -15459.336584] SLOW spr round 1 (radius: 5)
[09:21:49 -15454.412983] SLOW spr round 2 (radius: 5)
[09:22:50 -15454.191428] SLOW spr round 3 (radius: 5)
[09:23:49 -15454.189924] SLOW spr round 4 (radius: 10)
[09:24:49 -15452.055260] SLOW spr round 5 (radius: 5)
[09:26:14 -15450.302491] SLOW spr round 6 (radius: 5)
[09:27:23 -15450.301010] SLOW spr round 7 (radius: 10)
[09:28:27 -15450.300829] SLOW spr round 8 (radius: 15)
[09:30:32 -15439.490868] SLOW spr round 9 (radius: 5)
[09:31:58 -15437.907390] SLOW spr round 10 (radius: 5)
[09:33:09 -15437.907307] SLOW spr round 11 (radius: 10)
[09:34:13 -15432.798358] SLOW spr round 12 (radius: 5)
[09:35:35 -15430.530103] SLOW spr round 13 (radius: 5)
[09:36:46 -15429.773512] SLOW spr round 14 (radius: 5)
[09:37:49 -15429.583208] SLOW spr round 15 (radius: 5)
[09:38:51 -15429.580454] SLOW spr round 16 (radius: 10)
[09:39:53 -15429.171359] SLOW spr round 17 (radius: 5)
[09:41:14 -15429.170173] SLOW spr round 18 (radius: 10)
[09:42:24 -15425.538238] SLOW spr round 19 (radius: 5)
[09:43:41 -15425.537920] SLOW spr round 20 (radius: 10)
[09:44:47 -15425.537843] SLOW spr round 21 (radius: 15)
[09:46:42 -15424.170773] SLOW spr round 22 (radius: 5)
[09:48:08 -15421.282868] SLOW spr round 23 (radius: 5)
[09:49:21 -15421.256061] SLOW spr round 24 (radius: 10)
[09:50:26 -15421.255928] SLOW spr round 25 (radius: 15)
[09:52:28 -15419.421003] SLOW spr round 26 (radius: 5)
[09:53:49 -15419.420950] SLOW spr round 27 (radius: 10)
[09:55:00 -15419.420933] SLOW spr round 28 (radius: 15)
[09:56:54 -15419.420915] SLOW spr round 29 (radius: 20)
[10:00:03 -15401.200101] SLOW spr round 30 (radius: 5)
[10:01:30 -15373.988006] SLOW spr round 31 (radius: 5)
[10:02:44 -15356.087251] SLOW spr round 32 (radius: 5)
[10:03:48 -15355.512401] SLOW spr round 33 (radius: 5)
[10:04:48 -15355.511370] SLOW spr round 34 (radius: 10)
[10:05:48 -15355.511231] SLOW spr round 35 (radius: 15)
[10:07:49 -15355.511201] SLOW spr round 36 (radius: 20)
[10:10:43 -15349.943341] SLOW spr round 37 (radius: 5)
[10:12:08 -15344.645659] SLOW spr round 38 (radius: 5)
[10:13:17 -15319.170766] SLOW spr round 39 (radius: 5)
[10:14:22 -15312.428528] SLOW spr round 40 (radius: 5)
[10:15:23 -15312.354814] SLOW spr round 41 (radius: 10)
[10:16:23 -15312.354223] SLOW spr round 42 (radius: 15)
[10:18:28 -15312.354005] SLOW spr round 43 (radius: 20)
[10:21:27 -15311.682056] SLOW spr round 44 (radius: 5)
[10:22:50 -15311.679078] SLOW spr round 45 (radius: 10)
[10:24:02 -15311.678098] SLOW spr round 46 (radius: 15)
[10:25:53 -15311.677544] SLOW spr round 47 (radius: 20)
[10:28:48 -15311.574723] SLOW spr round 48 (radius: 5)
[10:30:08 -15311.574686] SLOW spr round 49 (radius: 10)
[10:31:20 -15311.574660] SLOW spr round 50 (radius: 15)
[10:33:09 -15311.574638] SLOW spr round 51 (radius: 20)
[10:36:06 -15311.554395] SLOW spr round 52 (radius: 25)
[10:39:18 -15301.275322] SLOW spr round 53 (radius: 5)
[10:40:42 -15298.255941] SLOW spr round 54 (radius: 5)
[10:41:50 -15298.255586] SLOW spr round 55 (radius: 10)
[10:42:51 -15296.918415] SLOW spr round 56 (radius: 5)
[10:44:08 -15296.918384] SLOW spr round 57 (radius: 10)
[10:45:13 -15296.918372] SLOW spr round 58 (radius: 15)
[10:47:01 -15296.302312] SLOW spr round 59 (radius: 5)
[10:48:20 -15296.302301] SLOW spr round 60 (radius: 10)
[10:49:29 -15296.302290] SLOW spr round 61 (radius: 15)
[10:51:14 -15296.302279] SLOW spr round 62 (radius: 20)
[10:53:59 -15283.357564] SLOW spr round 63 (radius: 5)
[10:55:20 -15283.355037] SLOW spr round 64 (radius: 10)
[10:56:30 -15283.354960] SLOW spr round 65 (radius: 15)
[10:58:15 -15283.354940] SLOW spr round 66 (radius: 20)
[11:01:03 -15281.669857] SLOW spr round 67 (radius: 5)
[11:02:23 -15281.669598] SLOW spr round 68 (radius: 10)
[11:03:34 -15281.669584] SLOW spr round 69 (radius: 15)
[11:05:17 -15281.669574] SLOW spr round 70 (radius: 20)
[11:08:00 -15281.669563] SLOW spr round 71 (radius: 25)
[11:11:02 -15279.150230] SLOW spr round 72 (radius: 5)
[11:12:23 -15279.150188] SLOW spr round 73 (radius: 10)
[11:13:34 -15279.150175] SLOW spr round 74 (radius: 15)
[11:15:18 -15279.150163] SLOW spr round 75 (radius: 20)
[11:18:00 -15279.150153] SLOW spr round 76 (radius: 25)
[11:20:59 -15278.892843] SLOW spr round 77 (radius: 5)
[11:22:21 -15278.873356] SLOW spr round 78 (radius: 10)
[11:23:33 -15278.422519] SLOW spr round 79 (radius: 5)
[11:24:48 -15278.420756] SLOW spr round 80 (radius: 10)
[11:25:54 -15278.420109] SLOW spr round 81 (radius: 15)
[11:27:40 -15278.351649] SLOW spr round 82 (radius: 20)
[11:30:21 -15278.350596] SLOW spr round 83 (radius: 25)
[11:33:24 -15278.192721] SLOW spr round 84 (radius: 5)
[11:34:44 -15278.192582] SLOW spr round 85 (radius: 10)
[11:35:55 -15277.779834] SLOW spr round 86 (radius: 5)
[11:37:09 -15277.176479] SLOW spr round 87 (radius: 5)
[11:38:12 -15277.176427] SLOW spr round 88 (radius: 10)
[11:39:11 -15277.176415] SLOW spr round 89 (radius: 15)
[11:41:00 -15277.176404] SLOW spr round 90 (radius: 20)
[11:43:37 -15277.176393] SLOW spr round 91 (radius: 25)
[11:46:35 -15277.176382] Model parameter optimization (eps = 0.100000)

[11:46:41] ML tree search #5, logLikelihood: -15276.557724

[11:46:41 -33267.603694] Initial branch length optimization
[11:46:42 -28314.504144] Model parameter optimization (eps = 10.000000)
[11:46:51 -28255.370514] AUTODETECT spr round 1 (radius: 5)
[11:47:30 -23552.270290] AUTODETECT spr round 2 (radius: 10)
[11:48:16 -20209.080769] AUTODETECT spr round 3 (radius: 15)
[11:49:12 -18405.799318] AUTODETECT spr round 4 (radius: 20)
[11:50:24 -17151.389198] AUTODETECT spr round 5 (radius: 25)
[11:51:50 -16655.363419] SPR radius for FAST iterations: 25 (autodetect)
[11:51:50 -16655.363419] Model parameter optimization (eps = 3.000000)
[11:51:57 -16630.692338] FAST spr round 1 (radius: 25)
[11:53:05 -15392.011588] FAST spr round 2 (radius: 25)
[11:54:00 -15273.715323] FAST spr round 3 (radius: 25)
[11:54:49 -15257.969428] FAST spr round 4 (radius: 25)
[11:55:34 -15257.931162] Model parameter optimization (eps = 1.000000)
[11:55:41 -15256.175780] SLOW spr round 1 (radius: 5)
[11:56:46 -15252.608318] SLOW spr round 2 (radius: 5)
[11:57:50 -15249.847086] SLOW spr round 3 (radius: 5)
[11:58:49 -15249.846933] SLOW spr round 4 (radius: 10)
[11:59:52 -15249.196879] SLOW spr round 5 (radius: 5)
[12:01:15 -15249.150559] SLOW spr round 6 (radius: 10)
[12:02:26 -15248.797429] SLOW spr round 7 (radius: 5)
[12:03:46 -15248.796030] SLOW spr round 8 (radius: 10)
[12:04:53 -15248.795922] SLOW spr round 9 (radius: 15)
[12:07:00 -15239.171848] SLOW spr round 10 (radius: 5)
[12:08:25 -15234.980383] SLOW spr round 11 (radius: 5)
[12:09:35 -15234.833139] SLOW spr round 12 (radius: 5)
[12:10:38 -15234.832747] SLOW spr round 13 (radius: 10)
[12:11:39 -15233.962987] SLOW spr round 14 (radius: 5)
[12:12:59 -15233.929065] SLOW spr round 15 (radius: 10)
[12:14:08 -15232.895772] SLOW spr round 16 (radius: 5)
[12:15:26 -15232.894231] SLOW spr round 17 (radius: 10)
[12:16:31 -15232.894179] SLOW spr round 18 (radius: 15)
[12:18:28 -15230.019918] SLOW spr round 19 (radius: 5)
[12:19:48 -15230.019797] SLOW spr round 20 (radius: 10)
[12:20:56 -15230.019777] SLOW spr round 21 (radius: 15)
[12:22:46 -15229.273161] SLOW spr round 22 (radius: 5)
[12:24:06 -15229.272979] SLOW spr round 23 (radius: 10)
[12:25:13 -15229.272951] SLOW spr round 24 (radius: 15)
[12:27:03 -15228.115341] SLOW spr round 25 (radius: 5)
[12:28:20 -15228.115267] SLOW spr round 26 (radius: 10)
[12:29:29 -15228.115241] SLOW spr round 27 (radius: 15)
[12:31:16 -15228.115218] SLOW spr round 28 (radius: 20)
[12:34:21 -15227.575668] SLOW spr round 29 (radius: 5)
[12:35:43 -15225.586988] SLOW spr round 30 (radius: 5)
[12:36:52 -15225.586966] SLOW spr round 31 (radius: 10)
[12:37:53 -15224.897475] SLOW spr round 32 (radius: 5)
[12:39:07 -15224.896831] SLOW spr round 33 (radius: 10)
[12:40:13 -15224.896788] SLOW spr round 34 (radius: 15)
[12:42:06 -15224.896766] SLOW spr round 35 (radius: 20)
[12:45:20 -15221.872140] SLOW spr round 36 (radius: 5)
[12:46:45 -15221.332652] SLOW spr round 37 (radius: 5)
[12:47:55 -15221.331166] SLOW spr round 38 (radius: 10)
[12:48:56 -15221.331151] SLOW spr round 39 (radius: 15)
[12:50:50 -15221.331137] SLOW spr round 40 (radius: 20)
[12:53:54 -15220.461157] SLOW spr round 41 (radius: 5)
[12:55:18 -15218.155616] SLOW spr round 42 (radius: 5)
[12:56:28 -15218.155534] SLOW spr round 43 (radius: 10)
[12:57:30 -15218.155520] SLOW spr round 44 (radius: 15)
[12:59:21 -15218.155506] SLOW spr round 45 (radius: 20)
[13:02:17 -15217.868752] SLOW spr round 46 (radius: 5)
[13:03:40 -15216.439948] SLOW spr round 47 (radius: 5)
[13:04:50 -15216.439817] SLOW spr round 48 (radius: 10)
[13:05:51 -15216.439796] SLOW spr round 49 (radius: 15)
[13:07:42 -15215.707068] SLOW spr round 50 (radius: 5)
[13:09:03 -15215.706877] SLOW spr round 51 (radius: 10)
[13:10:10 -15215.706859] SLOW spr round 52 (radius: 15)
[13:11:54 -15215.706847] SLOW spr round 53 (radius: 20)
[13:14:59 -15213.743185] SLOW spr round 54 (radius: 5)
[13:16:22 -15213.444539] SLOW spr round 55 (radius: 5)
[13:17:32 -15213.442107] SLOW spr round 56 (radius: 10)
[13:18:34 -15213.442037] SLOW spr round 57 (radius: 15)
[13:20:30 -15213.442031] SLOW spr round 58 (radius: 20)
[13:23:37 -15213.442031] SLOW spr round 59 (radius: 25)
[13:27:27 -15208.953362] SLOW spr round 60 (radius: 5)
[13:28:49 -15207.466292] SLOW spr round 61 (radius: 5)
[13:30:01 -15206.794539] SLOW spr round 62 (radius: 5)
[13:31:03 -15206.794468] SLOW spr round 63 (radius: 10)
[13:32:00 -15206.794446] SLOW spr round 64 (radius: 15)
[13:34:03 -15206.794424] SLOW spr round 65 (radius: 20)
[13:37:09 -15206.794402] SLOW spr round 66 (radius: 25)
[13:40:57 -15205.653443] SLOW spr round 67 (radius: 5)
[13:42:18 -15205.653396] SLOW spr round 68 (radius: 10)
[13:43:32 -15202.517116] SLOW spr round 69 (radius: 5)
[13:44:50 -15201.351873] SLOW spr round 70 (radius: 5)
[13:45:57 -15201.349966] SLOW spr round 71 (radius: 10)
[13:46:58 -15201.349686] SLOW spr round 72 (radius: 15)
[13:48:52 -15201.349634] SLOW spr round 73 (radius: 20)
[13:51:49 -15201.094576] SLOW spr round 74 (radius: 5)
[13:53:12 -15200.597678] SLOW spr round 75 (radius: 5)
[13:54:21 -15200.597637] SLOW spr round 76 (radius: 10)
[13:55:23 -15200.597615] SLOW spr round 77 (radius: 15)
[13:57:11 -15200.597594] SLOW spr round 78 (radius: 20)
[14:00:07 -15200.597572] SLOW spr round 79 (radius: 25)
[14:03:50 -15197.657635] SLOW spr round 80 (radius: 5)
[14:05:12 -15197.396853] SLOW spr round 81 (radius: 5)
[14:06:21 -15197.396814] SLOW spr round 82 (radius: 10)
[14:07:22 -15197.396790] SLOW spr round 83 (radius: 15)
[14:09:06 -15197.396768] SLOW spr round 84 (radius: 20)
[14:11:58 -15197.396746] SLOW spr round 85 (radius: 25)
[14:15:32 -15197.177976] SLOW spr round 86 (radius: 5)
[14:16:51 -15197.177950] SLOW spr round 87 (radius: 10)
[14:17:58 -15197.177926] SLOW spr round 88 (radius: 15)
[14:19:35 -15197.177905] SLOW spr round 89 (radius: 20)
[14:22:28 -15197.177884] SLOW spr round 90 (radius: 25)
[14:26:01 -15197.159814] Model parameter optimization (eps = 0.100000)

[14:26:07] ML tree search #6, logLikelihood: -15196.675575

[14:26:07 -33562.670371] Initial branch length optimization
[14:26:08 -28575.519224] Model parameter optimization (eps = 10.000000)
[14:26:25 -28316.882756] AUTODETECT spr round 1 (radius: 5)
[14:27:05 -23866.442539] AUTODETECT spr round 2 (radius: 10)
[14:27:53 -20148.595087] AUTODETECT spr round 3 (radius: 15)
[14:28:51 -18581.461659] AUTODETECT spr round 4 (radius: 20)
[14:30:08 -17168.201928] AUTODETECT spr round 5 (radius: 25)
[14:31:42 -16751.965627] SPR radius for FAST iterations: 25 (autodetect)
[14:31:42 -16751.965627] Model parameter optimization (eps = 3.000000)
[14:31:50 -16739.712521] FAST spr round 1 (radius: 25)
[14:33:05 -15772.179006] FAST spr round 2 (radius: 25)
[14:33:51 -15687.498278] FAST spr round 3 (radius: 25)
[14:34:34 -15663.810982] FAST spr round 4 (radius: 25)
[14:35:14 -15662.839434] FAST spr round 5 (radius: 25)
[14:35:53 -15662.824403] Model parameter optimization (eps = 1.000000)
[14:36:02 -15653.020595] SLOW spr round 1 (radius: 5)
[14:36:49 -15649.307266] SLOW spr round 2 (radius: 5)
[14:37:35 -15648.885247] SLOW spr round 3 (radius: 5)
[14:38:20 -15648.884572] SLOW spr round 4 (radius: 10)
[14:39:08 -15646.457994] SLOW spr round 5 (radius: 5)
[14:40:04 -15642.671632] SLOW spr round 6 (radius: 5)
[14:40:55 -15642.660445] SLOW spr round 7 (radius: 10)
[14:41:43 -15642.660445] SLOW spr round 8 (radius: 15)
[14:42:53 -15639.828651] SLOW spr round 9 (radius: 5)
[14:43:52 -15637.849850] SLOW spr round 10 (radius: 5)
[14:44:43 -15637.460928] SLOW spr round 11 (radius: 5)
[14:45:30 -15637.460731] SLOW spr round 12 (radius: 10)
[14:46:18 -15636.041909] SLOW spr round 13 (radius: 5)
[14:47:12 -15632.107226] SLOW spr round 14 (radius: 5)
[14:48:01 -15631.048442] SLOW spr round 15 (radius: 5)
[14:48:46 -15631.048320] SLOW spr round 16 (radius: 10)
[14:49:34 -15631.048317] SLOW spr round 17 (radius: 15)
[14:50:45 -15624.688479] SLOW spr round 18 (radius: 5)
[14:51:43 -15622.833071] SLOW spr round 19 (radius: 5)
[14:52:34 -15622.832413] SLOW spr round 20 (radius: 10)
[14:53:23 -15622.831876] SLOW spr round 21 (radius: 15)
[14:54:32 -15622.656801] SLOW spr round 22 (radius: 5)
[14:55:28 -15622.656038] SLOW spr round 23 (radius: 10)
[14:56:19 -15622.655747] SLOW spr round 24 (radius: 15)
[14:57:25 -15622.388528] SLOW spr round 25 (radius: 5)
[14:58:21 -15622.226999] SLOW spr round 26 (radius: 5)
[14:59:12 -15622.226804] SLOW spr round 27 (radius: 10)
[14:59:59 -15622.226705] SLOW spr round 28 (radius: 15)
[15:01:06 -15622.226628] SLOW spr round 29 (radius: 20)
[15:02:31 -15617.124912] SLOW spr round 30 (radius: 5)
[15:03:31 -15615.042093] SLOW spr round 31 (radius: 5)
[15:04:23 -15615.040263] SLOW spr round 32 (radius: 10)
[15:05:11 -15614.742881] SLOW spr round 33 (radius: 5)
[15:06:06 -15614.742784] SLOW spr round 34 (radius: 10)
[15:06:57 -15614.742775] SLOW spr round 35 (radius: 15)
[15:08:06 -15613.377433] SLOW spr round 36 (radius: 5)
[15:09:04 -15613.215041] SLOW spr round 37 (radius: 5)
[15:09:56 -15613.214582] SLOW spr round 38 (radius: 10)
[15:10:45 -15613.214563] SLOW spr round 39 (radius: 15)
[15:11:55 -15613.214555] SLOW spr round 40 (radius: 20)
[15:13:24 -15611.549528] SLOW spr round 41 (radius: 5)
[15:14:21 -15610.772730] SLOW spr round 42 (radius: 5)
[15:15:09 -15610.772425] SLOW spr round 43 (radius: 10)
[15:15:55 -15610.772411] SLOW spr round 44 (radius: 15)
[15:17:04 -15610.772402] SLOW spr round 45 (radius: 20)
[15:18:33 -15609.335508] SLOW spr round 46 (radius: 5)
[15:19:29 -15609.335493] SLOW spr round 47 (radius: 10)
[15:20:21 -15609.335487] SLOW spr round 48 (radius: 15)
[15:21:28 -15609.335481] SLOW spr round 49 (radius: 20)
[15:22:57 -15609.335475] SLOW spr round 50 (radius: 25)
[15:24:44 -15573.866146] SLOW spr round 51 (radius: 5)
[15:25:42 -15571.827946] SLOW spr round 52 (radius: 5)
[15:26:35 -15570.253055] SLOW spr round 53 (radius: 5)
[15:27:23 -15569.536290] SLOW spr round 54 (radius: 5)
[15:28:09 -15569.365897] SLOW spr round 55 (radius: 5)
[15:28:52 -15569.365492] SLOW spr round 56 (radius: 10)
[15:29:36 -15566.678033] SLOW spr round 57 (radius: 5)
[15:30:28 -15566.570170] SLOW spr round 58 (radius: 5)
[15:31:16 -15566.570062] SLOW spr round 59 (radius: 10)
[15:32:05 -15550.456161] SLOW spr round 60 (radius: 5)
[15:33:01 -15540.079922] SLOW spr round 61 (radius: 5)
[15:33:50 -15539.980561] SLOW spr round 62 (radius: 10)
[15:34:36 -15539.971919] SLOW spr round 63 (radius: 15)
[15:35:48 -15514.358090] SLOW spr round 64 (radius: 5)
[15:36:46 -15508.603407] SLOW spr round 65 (radius: 5)
[15:37:36 -15508.602971] SLOW spr round 66 (radius: 10)
[15:38:24 -15508.602944] SLOW spr round 67 (radius: 15)
[15:39:30 -15506.730949] SLOW spr round 68 (radius: 5)
[15:40:27 -15506.432266] SLOW spr round 69 (radius: 5)
[15:41:16 -15506.431878] SLOW spr round 70 (radius: 10)
[15:42:02 -15506.431856] SLOW spr round 71 (radius: 15)
[15:43:05 -15506.160302] SLOW spr round 72 (radius: 5)
[15:43:58 -15506.160294] SLOW spr round 73 (radius: 10)
[15:44:47 -15504.958915] SLOW spr round 74 (radius: 5)
[15:45:40 -15504.776932] SLOW spr round 75 (radius: 5)
[15:46:28 -15504.776895] SLOW spr round 76 (radius: 10)
[15:47:13 -15504.776889] SLOW spr round 77 (radius: 15)
[15:48:18 -15504.776883] SLOW spr round 78 (radius: 20)
[15:49:45 -15500.308921] SLOW spr round 79 (radius: 5)
[15:50:41 -15499.525218] SLOW spr round 80 (radius: 5)
[15:51:30 -15499.525139] SLOW spr round 81 (radius: 10)
[15:52:16 -15499.525133] SLOW spr round 82 (radius: 15)
[15:53:22 -15487.602016] SLOW spr round 83 (radius: 5)
[15:54:15 -15487.601850] SLOW spr round 84 (radius: 10)
[15:55:01 -15487.601841] SLOW spr round 85 (radius: 15)
[15:56:00 -15487.601835] SLOW spr round 86 (radius: 20)
[15:57:26 -15487.601829] SLOW spr round 87 (radius: 25)
[15:59:17 -15482.713186] SLOW spr round 88 (radius: 5)
[16:00:14 -15482.699299] SLOW spr round 89 (radius: 10)
[16:01:05 -15481.928484] SLOW spr round 90 (radius: 5)
[16:01:59 -15481.926944] SLOW spr round 91 (radius: 10)
[16:02:47 -15481.926886] SLOW spr round 92 (radius: 15)
[16:03:52 -15480.508357] SLOW spr round 93 (radius: 5)
[16:04:47 -15480.508276] SLOW spr round 94 (radius: 10)
[16:05:34 -15480.508268] SLOW spr round 95 (radius: 15)
[16:06:35 -15480.508262] SLOW spr round 96 (radius: 20)
[16:08:05 -15480.508256] SLOW spr round 97 (radius: 25)
[16:09:57 -15479.783907] SLOW spr round 98 (radius: 5)
[16:10:54 -15479.780757] SLOW spr round 99 (radius: 10)
[16:11:44 -15479.780512] SLOW spr round 100 (radius: 15)
[16:12:49 -15479.780490] SLOW spr round 101 (radius: 20)
[16:14:19 -15479.780483] SLOW spr round 102 (radius: 25)
[16:16:11 -15479.502439] SLOW spr round 103 (radius: 5)
[16:17:07 -15477.625562] SLOW spr round 104 (radius: 5)
[16:17:58 -15477.126671] SLOW spr round 105 (radius: 5)
[16:18:46 -15477.126584] SLOW spr round 106 (radius: 10)
[16:19:31 -15477.126577] SLOW spr round 107 (radius: 15)
[16:20:37 -15477.126571] SLOW spr round 108 (radius: 20)
[16:22:03 -15477.126565] SLOW spr round 109 (radius: 25)
[16:23:55 -15477.126559] Model parameter optimization (eps = 0.100000)

[16:24:00] ML tree search #7, logLikelihood: -15476.208713

[16:24:00 -33345.155056] Initial branch length optimization
[16:24:00 -28314.193083] Model parameter optimization (eps = 10.000000)
[16:24:07 -28251.046457] AUTODETECT spr round 1 (radius: 5)
[16:24:46 -23628.078497] AUTODETECT spr round 2 (radius: 10)
[16:25:33 -19960.424823] AUTODETECT spr round 3 (radius: 15)
[16:26:24 -18224.262907] AUTODETECT spr round 4 (radius: 20)
[16:27:31 -17397.462031] AUTODETECT spr round 5 (radius: 25)
[16:28:49 -16870.626056] SPR radius for FAST iterations: 25 (autodetect)
[16:28:49 -16870.626056] Model parameter optimization (eps = 3.000000)
[16:28:53 -16867.746130] FAST spr round 1 (radius: 25)
[16:30:00 -15500.957760] FAST spr round 2 (radius: 25)
[16:30:55 -15394.459096] FAST spr round 3 (radius: 25)
[16:31:49 -15378.852840] FAST spr round 4 (radius: 25)
[16:32:36 -15375.820458] FAST spr round 5 (radius: 25)
[16:33:20 -15375.482278] FAST spr round 6 (radius: 25)
[16:34:03 -15375.479811] Model parameter optimization (eps = 1.000000)
[16:34:06 -15375.062340] SLOW spr round 1 (radius: 5)
[16:35:07 -15367.509115] SLOW spr round 2 (radius: 5)
[16:36:07 -15365.322208] SLOW spr round 3 (radius: 5)
[16:37:04 -15364.573709] SLOW spr round 4 (radius: 5)
[16:37:58 -15364.356178] SLOW spr round 5 (radius: 5)
[16:38:55 -15364.354409] SLOW spr round 6 (radius: 10)
[16:39:56 -15360.888511] SLOW spr round 7 (radius: 5)
[16:41:19 -15360.288228] SLOW spr round 8 (radius: 5)
[16:42:30 -15359.171459] SLOW spr round 9 (radius: 5)
[16:43:32 -15359.171434] SLOW spr round 10 (radius: 10)
[16:44:32 -15359.158216] SLOW spr round 11 (radius: 15)
[16:46:38 -15354.241325] SLOW spr round 12 (radius: 5)
[16:48:00 -15352.659249] SLOW spr round 13 (radius: 5)
[16:49:07 -15352.658631] SLOW spr round 14 (radius: 10)
[16:50:09 -15352.315271] SLOW spr round 15 (radius: 5)
[16:51:27 -15352.062149] SLOW spr round 16 (radius: 5)
[16:52:34 -15352.062140] SLOW spr round 17 (radius: 10)
[16:53:35 -15352.062137] SLOW spr round 18 (radius: 15)
[16:55:33 -15351.530500] SLOW spr round 19 (radius: 5)
[16:56:58 -15351.136461] SLOW spr round 20 (radius: 5)
[16:58:09 -15351.059873] SLOW spr round 21 (radius: 10)
[16:59:08 -15351.059791] SLOW spr round 22 (radius: 15)
[17:01:04 -15351.059786] SLOW spr round 23 (radius: 20)
[17:04:21 -15308.054717] SLOW spr round 24 (radius: 5)
[17:05:48 -15307.866911] SLOW spr round 25 (radius: 5)
[17:06:59 -15307.866905] SLOW spr round 26 (radius: 10)
[17:08:02 -15301.641219] SLOW spr round 27 (radius: 5)
[17:09:23 -15301.635361] SLOW spr round 28 (radius: 10)
[17:10:30 -15301.458817] SLOW spr round 29 (radius: 5)
[17:11:50 -15301.457258] SLOW spr round 30 (radius: 10)
[17:12:58 -15301.456994] SLOW spr round 31 (radius: 15)
[17:14:54 -15300.958377] SLOW spr round 32 (radius: 5)
[17:16:19 -15300.586733] SLOW spr round 33 (radius: 5)
[17:17:30 -15300.117525] SLOW spr round 34 (radius: 5)
[17:18:35 -15299.974794] SLOW spr round 35 (radius: 5)
[17:19:36 -15299.974771] SLOW spr round 36 (radius: 10)
[17:20:36 -15299.639414] SLOW spr round 37 (radius: 5)
[17:22:00 -15298.822035] SLOW spr round 38 (radius: 5)
[17:23:09 -15298.822032] SLOW spr round 39 (radius: 10)
[17:24:11 -15298.822029] SLOW spr round 40 (radius: 15)
[17:26:05 -15298.822026] SLOW spr round 41 (radius: 20)
[17:28:58 -15296.420463] SLOW spr round 42 (radius: 5)
[17:30:23 -15296.420388] SLOW spr round 43 (radius: 10)
[17:31:33 -15295.086419] SLOW spr round 44 (radius: 5)
[17:32:52 -15295.086210] SLOW spr round 45 (radius: 10)
[17:33:57 -15295.086205] SLOW spr round 46 (radius: 15)
[17:35:47 -15295.086202] SLOW spr round 47 (radius: 20)
[17:38:40 -15294.463727] SLOW spr round 48 (radius: 5)
[17:40:05 -15293.604686] SLOW spr round 49 (radius: 5)
[17:41:16 -15293.604133] SLOW spr round 50 (radius: 10)
[17:42:19 -15293.604114] SLOW spr round 51 (radius: 15)
[17:44:13 -15293.604110] SLOW spr round 52 (radius: 20)
[17:47:08 -15293.300374] SLOW spr round 53 (radius: 5)
[17:48:35 -15293.291907] SLOW spr round 54 (radius: 10)
[17:49:46 -15293.117332] SLOW spr round 55 (radius: 5)
[17:51:05 -15293.117129] SLOW spr round 56 (radius: 10)
[17:52:10 -15293.117125] SLOW spr round 57 (radius: 15)
[17:54:02 -15293.117123] SLOW spr round 58 (radius: 20)
[17:56:58 -15292.940969] SLOW spr round 59 (radius: 5)
[17:58:22 -15292.940936] SLOW spr round 60 (radius: 10)
[17:59:32 -15292.940933] SLOW spr round 61 (radius: 15)
[18:01:23 -15292.902483] SLOW spr round 62 (radius: 20)
[18:04:23 -15292.269204] SLOW spr round 63 (radius: 5)
[18:05:49 -15292.176860] SLOW spr round 64 (radius: 10)
[18:06:59 -15292.176857] SLOW spr round 65 (radius: 15)
[18:08:50 -15292.176854] SLOW spr round 66 (radius: 20)
[18:11:47 -15292.032579] SLOW spr round 67 (radius: 5)
[18:13:10 -15292.031685] SLOW spr round 68 (radius: 10)
[18:14:19 -15292.031676] SLOW spr round 69 (radius: 15)
[18:16:11 -15292.031673] SLOW spr round 70 (radius: 20)
[18:19:13 -15292.031671] SLOW spr round 71 (radius: 25)
[18:22:27 -15289.339289] SLOW spr round 72 (radius: 5)
[18:23:52 -15289.108635] SLOW spr round 73 (radius: 5)
[18:25:04 -15289.108295] SLOW spr round 74 (radius: 10)
[18:26:11 -15288.569974] SLOW spr round 75 (radius: 5)
[18:27:33 -15288.569700] SLOW spr round 76 (radius: 10)
[18:28:41 -15288.569679] SLOW spr round 77 (radius: 15)
[18:30:44 -15286.831157] SLOW spr round 78 (radius: 5)
[18:32:11 -15286.628865] SLOW spr round 79 (radius: 5)
[18:33:27 -15286.628854] SLOW spr round 80 (radius: 10)
[18:34:32 -15286.628851] SLOW spr round 81 (radius: 15)
[18:36:36 -15286.628849] SLOW spr round 82 (radius: 20)
[18:39:41 -15286.628846] SLOW spr round 83 (radius: 25)
[18:42:57 -15279.620722] SLOW spr round 84 (radius: 5)
[18:44:27 -15255.671526] SLOW spr round 85 (radius: 5)
[18:45:39 -15255.671450] SLOW spr round 86 (radius: 10)
[18:46:43 -15255.671447] SLOW spr round 87 (radius: 15)
[18:48:43 -15255.671445] SLOW spr round 88 (radius: 20)
[18:51:44 -15255.671443] SLOW spr round 89 (radius: 25)
[18:54:54 -15255.643736] Model parameter optimization (eps = 0.100000)

[18:54:58] ML tree search #8, logLikelihood: -15254.937756

[18:54:58 -33430.108065] Initial branch length optimization
[18:54:59 -28319.407143] Model parameter optimization (eps = 10.000000)
[18:55:10 -28205.527050] AUTODETECT spr round 1 (radius: 5)
[18:55:46 -23483.949277] AUTODETECT spr round 2 (radius: 10)
[18:56:36 -19689.587137] AUTODETECT spr round 3 (radius: 15)
[18:57:33 -17384.987166] AUTODETECT spr round 4 (radius: 20)
[18:58:45 -16722.080425] AUTODETECT spr round 5 (radius: 25)
[19:00:13 -16315.763951] SPR radius for FAST iterations: 25 (autodetect)
[19:00:13 -16315.763951] Model parameter optimization (eps = 3.000000)
[19:00:21 -16309.137765] FAST spr round 1 (radius: 25)
[19:01:31 -15326.599638] FAST spr round 2 (radius: 25)
[19:02:30 -15258.908889] FAST spr round 3 (radius: 25)
[19:03:20 -15226.801727] FAST spr round 4 (radius: 25)
[19:04:03 -15223.790960] FAST spr round 5 (radius: 25)
[19:04:45 -15223.775914] Model parameter optimization (eps = 1.000000)
[19:04:48 -15223.308634] SLOW spr round 1 (radius: 5)
[19:05:46 -15219.208274] SLOW spr round 2 (radius: 5)
[19:06:44 -15218.690475] SLOW spr round 3 (radius: 5)
[19:07:41 -15218.690141] SLOW spr round 4 (radius: 10)
[19:08:40 -15215.803868] SLOW spr round 5 (radius: 5)
[19:09:57 -15215.803749] SLOW spr round 6 (radius: 10)
[19:11:03 -15214.747416] SLOW spr round 7 (radius: 5)
[19:12:17 -15214.747316] SLOW spr round 8 (radius: 10)
[19:13:21 -15214.747313] SLOW spr round 9 (radius: 15)
[19:15:23 -15213.077511] SLOW spr round 10 (radius: 5)
[19:16:45 -15206.823978] SLOW spr round 11 (radius: 5)
[19:17:54 -15204.535383] SLOW spr round 12 (radius: 5)
[19:18:57 -15204.040363] SLOW spr round 13 (radius: 5)
[19:19:53 -15204.039619] SLOW spr round 14 (radius: 10)
[19:20:50 -15204.039583] SLOW spr round 15 (radius: 15)
[19:22:43 -15204.039579] SLOW spr round 16 (radius: 20)
[19:25:51 -15200.933427] SLOW spr round 17 (radius: 5)
[19:27:10 -15199.833635] SLOW spr round 18 (radius: 5)
[19:28:16 -15199.786730] SLOW spr round 19 (radius: 10)
[19:29:16 -15198.676800] SLOW spr round 20 (radius: 5)
[19:30:30 -15198.676571] SLOW spr round 21 (radius: 10)
[19:31:33 -15198.676568] SLOW spr round 22 (radius: 15)
[19:33:21 -15198.676566] SLOW spr round 23 (radius: 20)
[19:36:41 -15196.996757] SLOW spr round 24 (radius: 5)
[19:37:59 -15196.996751] SLOW spr round 25 (radius: 10)
[19:39:06 -15196.996749] SLOW spr round 26 (radius: 15)
[19:40:51 -15196.996747] SLOW spr round 27 (radius: 20)
[19:44:11 -15196.546999] SLOW spr round 28 (radius: 5)
[19:45:28 -15196.546173] SLOW spr round 29 (radius: 10)
[19:46:35 -15196.546072] SLOW spr round 30 (radius: 15)
[19:48:20 -15196.546059] SLOW spr round 31 (radius: 20)
[19:51:42 -15195.562532] SLOW spr round 32 (radius: 5)
[19:53:04 -15193.713250] SLOW spr round 33 (radius: 5)
[19:54:11 -15193.659436] SLOW spr round 34 (radius: 10)
[19:55:11 -15193.659380] SLOW spr round 35 (radius: 15)
[19:57:05 -15193.659350] SLOW spr round 36 (radius: 20)
[20:00:24 -15190.490173] SLOW spr round 37 (radius: 5)
[20:01:45 -15188.713157] SLOW spr round 38 (radius: 5)
[20:02:52 -15188.713135] SLOW spr round 39 (radius: 10)
[20:03:51 -15188.458662] SLOW spr round 40 (radius: 5)
[20:05:05 -15188.458534] SLOW spr round 41 (radius: 10)
[20:06:08 -15188.458532] SLOW spr round 42 (radius: 15)
[20:07:57 -15188.458530] SLOW spr round 43 (radius: 20)
[20:11:15 -15188.458528] SLOW spr round 44 (radius: 25)
[20:15:27 -15167.829483] SLOW spr round 45 (radius: 5)
[20:16:47 -15143.251904] SLOW spr round 46 (radius: 5)
[20:17:56 -15143.045556] SLOW spr round 47 (radius: 5)
[20:18:56 -15143.043595] SLOW spr round 48 (radius: 10)
[20:19:52 -15143.043400] SLOW spr round 49 (radius: 15)
[20:21:46 -15143.043372] SLOW spr round 50 (radius: 20)
[20:24:52 -15143.043366] SLOW spr round 51 (radius: 25)
[20:28:59 -15142.202653] SLOW spr round 52 (radius: 5)
[20:30:18 -15141.608724] SLOW spr round 53 (radius: 5)
[20:31:22 -15141.608708] SLOW spr round 54 (radius: 10)
[20:32:20 -15141.608706] SLOW spr round 55 (radius: 15)
[20:34:04 -15141.608704] SLOW spr round 56 (radius: 20)
[20:37:10 -15141.608702] SLOW spr round 57 (radius: 25)
[20:41:12 -15141.405878] SLOW spr round 58 (radius: 5)
[20:42:28 -15141.068013] SLOW spr round 59 (radius: 5)
[20:43:32 -15141.068011] SLOW spr round 60 (radius: 10)
[20:44:30 -15141.068009] SLOW spr round 61 (radius: 15)
[20:46:15 -15141.068007] SLOW spr round 62 (radius: 20)
[20:49:19 -15141.068005] SLOW spr round 63 (radius: 25)
[20:53:19 -15141.068003] Model parameter optimization (eps = 0.100000)

[20:53:27] ML tree search #9, logLikelihood: -15140.778445

[20:53:27 -33356.491159] Initial branch length optimization
[20:53:27 -28370.822740] Model parameter optimization (eps = 10.000000)
[20:53:35 -28311.040081] AUTODETECT spr round 1 (radius: 5)
[20:54:13 -23608.590836] AUTODETECT spr round 2 (radius: 10)
[20:54:59 -20090.828582] AUTODETECT spr round 3 (radius: 15)
[20:55:52 -17807.050272] AUTODETECT spr round 4 (radius: 20)
[20:56:52 -17097.847792] AUTODETECT spr round 5 (radius: 25)
[20:58:01 -16830.407240] SPR radius for FAST iterations: 25 (autodetect)
[20:58:01 -16830.407240] Model parameter optimization (eps = 3.000000)
[20:58:05 -16829.409354] FAST spr round 1 (radius: 25)
[20:59:10 -15665.060322] FAST spr round 2 (radius: 25)
[21:00:11 -15518.323249] FAST spr round 3 (radius: 25)
[21:01:02 -15450.955066] FAST spr round 4 (radius: 25)
[21:01:48 -15441.626515] FAST spr round 5 (radius: 25)
[21:02:31 -15440.421708] FAST spr round 6 (radius: 25)
[21:03:13 -15440.421375] Model parameter optimization (eps = 1.000000)
[21:03:16 -15440.029944] SLOW spr round 1 (radius: 5)
[21:04:14 -15433.951664] SLOW spr round 2 (radius: 5)
[21:05:11 -15432.964321] SLOW spr round 3 (radius: 5)
[21:06:06 -15432.962885] SLOW spr round 4 (radius: 10)
[21:07:03 -15432.730851] SLOW spr round 5 (radius: 5)
[21:08:17 -15432.112852] SLOW spr round 6 (radius: 5)
[21:09:21 -15430.310325] SLOW spr round 7 (radius: 5)
[21:10:19 -15430.309548] SLOW spr round 8 (radius: 10)
[21:11:16 -15430.308772] SLOW spr round 9 (radius: 15)
[21:13:06 -15424.179841] SLOW spr round 10 (radius: 5)
[21:14:29 -15414.945589] SLOW spr round 11 (radius: 5)
[21:15:37 -15414.819563] SLOW spr round 12 (radius: 5)
[21:16:38 -15414.818549] SLOW spr round 13 (radius: 10)
[21:17:36 -15413.567653] SLOW spr round 14 (radius: 5)
[21:18:55 -15412.754078] SLOW spr round 15 (radius: 5)
[21:20:00 -15412.754024] SLOW spr round 16 (radius: 10)
[21:20:59 -15412.754012] SLOW spr round 17 (radius: 15)
[21:22:45 -15411.074466] SLOW spr round 18 (radius: 5)
[21:24:06 -15398.769538] SLOW spr round 19 (radius: 5)
[21:25:13 -15398.769519] SLOW spr round 20 (radius: 10)
[21:26:14 -15398.769508] SLOW spr round 21 (radius: 15)
[21:27:58 -15398.660665] SLOW spr round 22 (radius: 5)
[21:29:16 -15398.660645] SLOW spr round 23 (radius: 10)
[21:30:24 -15398.660634] SLOW spr round 24 (radius: 15)
[21:32:02 -15398.660622] SLOW spr round 25 (radius: 20)
[21:34:49 -15388.880119] SLOW spr round 26 (radius: 5)
[21:36:12 -15387.615604] SLOW spr round 27 (radius: 5)
[21:37:21 -15387.615429] SLOW spr round 28 (radius: 10)
[21:38:22 -15387.615414] SLOW spr round 29 (radius: 15)
[21:40:05 -15387.615402] SLOW spr round 30 (radius: 20)
[21:42:50 -15386.442513] SLOW spr round 31 (radius: 5)
[21:44:11 -15386.309857] SLOW spr round 32 (radius: 5)
[21:45:20 -15386.309259] SLOW spr round 33 (radius: 10)
[21:46:20 -15385.987491] SLOW spr round 34 (radius: 5)
[21:47:36 -15385.746966] SLOW spr round 35 (radius: 5)
[21:48:41 -15385.744687] SLOW spr round 36 (radius: 10)
[21:49:40 -15385.744319] SLOW spr round 37 (radius: 15)
[21:51:25 -15385.298753] SLOW spr round 38 (radius: 5)
[21:52:45 -15384.807663] SLOW spr round 39 (radius: 5)
[21:53:52 -15384.805789] SLOW spr round 40 (radius: 10)
[21:54:52 -15384.805612] SLOW spr round 41 (radius: 15)
[21:56:35 -15382.892407] SLOW spr round 42 (radius: 5)
[21:57:57 -15382.667081] SLOW spr round 43 (radius: 5)
[21:59:04 -15382.665343] SLOW spr round 44 (radius: 10)
[22:00:04 -15382.664820] SLOW spr round 45 (radius: 15)
[22:01:45 -15382.664637] SLOW spr round 46 (radius: 20)
[22:04:21 -15380.629931] SLOW spr round 47 (radius: 5)
[22:05:43 -15380.628847] SLOW spr round 48 (radius: 10)
[22:06:52 -15380.628831] SLOW spr round 49 (radius: 15)
[22:08:31 -15380.628830] SLOW spr round 50 (radius: 20)
[22:11:13 -15379.999524] SLOW spr round 51 (radius: 5)
[22:12:33 -15379.996873] SLOW spr round 52 (radius: 10)
[22:13:42 -15379.996823] SLOW spr round 53 (radius: 15)
[22:15:19 -15379.996816] SLOW spr round 54 (radius: 20)
[22:17:56 -15379.996814] SLOW spr round 55 (radius: 25)
[22:21:12 -15352.560769] SLOW spr round 56 (radius: 5)
[22:22:41 -15310.694340] SLOW spr round 57 (radius: 5)
[22:23:52 -15310.317890] SLOW spr round 58 (radius: 5)
[22:24:54 -15310.160092] SLOW spr round 59 (radius: 5)
[22:25:52 -15310.160041] SLOW spr round 60 (radius: 10)
[22:26:50 -15308.529400] SLOW spr round 61 (radius: 5)
[22:28:07 -15308.529342] SLOW spr round 62 (radius: 10)
[22:29:12 -15308.529332] SLOW spr round 63 (radius: 15)
[22:30:52 -15306.152790] SLOW spr round 64 (radius: 5)
[22:32:11 -15306.152611] SLOW spr round 65 (radius: 10)
[22:33:18 -15306.152601] SLOW spr round 66 (radius: 15)
[22:34:55 -15306.152591] SLOW spr round 67 (radius: 20)
[22:37:29 -15305.868698] SLOW spr round 68 (radius: 5)
[22:38:49 -15305.504091] SLOW spr round 69 (radius: 5)
[22:39:57 -15305.502516] SLOW spr round 70 (radius: 10)
[22:40:58 -15305.502036] SLOW spr round 71 (radius: 15)
[22:42:38 -15305.502024] SLOW spr round 72 (radius: 20)
[22:45:10 -15305.502015] SLOW spr round 73 (radius: 25)
[22:48:16 -15305.473432] Model parameter optimization (eps = 0.100000)

[22:48:22] ML tree search #10, logLikelihood: -15305.304796

[22:48:22 -33331.061775] Initial branch length optimization
[22:48:22 -28291.052126] Model parameter optimization (eps = 10.000000)
[22:48:32 -28184.081454] AUTODETECT spr round 1 (radius: 5)
[22:49:09 -23659.243790] AUTODETECT spr round 2 (radius: 10)
[22:49:58 -19998.957255] AUTODETECT spr round 3 (radius: 15)
[22:50:56 -17814.833860] AUTODETECT spr round 4 (radius: 20)
[22:51:59 -17087.733162] AUTODETECT spr round 5 (radius: 25)
[22:53:07 -16802.236393] SPR radius for FAST iterations: 25 (autodetect)
[22:53:07 -16802.236393] Model parameter optimization (eps = 3.000000)
[22:53:12 -16799.303179] FAST spr round 1 (radius: 25)
[22:54:17 -15563.190635] FAST spr round 2 (radius: 25)
[22:55:17 -15430.724527] FAST spr round 3 (radius: 25)
[22:56:10 -15411.446670] FAST spr round 4 (radius: 25)
[22:56:58 -15407.370686] FAST spr round 5 (radius: 25)
[22:57:41 -15406.446992] FAST spr round 6 (radius: 25)
[22:58:23 -15406.348855] Model parameter optimization (eps = 1.000000)
[22:58:25 -15406.014312] SLOW spr round 1 (radius: 5)
[22:59:23 -15404.065947] SLOW spr round 2 (radius: 5)
[23:00:22 -15400.113259] SLOW spr round 3 (radius: 5)
[23:01:18 -15400.112254] SLOW spr round 4 (radius: 10)
[23:02:21 -15392.393455] SLOW spr round 5 (radius: 5)
[23:03:42 -15386.201116] SLOW spr round 6 (radius: 5)
[23:04:51 -15384.045895] SLOW spr round 7 (radius: 5)
[23:05:52 -15384.044694] SLOW spr round 8 (radius: 10)
[23:06:51 -15383.652372] SLOW spr round 9 (radius: 5)
[23:08:07 -15383.651986] SLOW spr round 10 (radius: 10)
[23:09:13 -15383.622734] SLOW spr round 11 (radius: 15)
[23:11:13 -15339.719132] SLOW spr round 12 (radius: 5)
[23:12:37 -15336.282041] SLOW spr round 13 (radius: 5)
[23:13:46 -15336.280014] SLOW spr round 14 (radius: 10)
[23:14:50 -15335.588175] SLOW spr round 15 (radius: 5)
[23:16:08 -15335.587486] SLOW spr round 16 (radius: 10)
[23:17:16 -15335.587269] SLOW spr round 17 (radius: 15)
[23:19:16 -15333.972407] SLOW spr round 18 (radius: 5)
[23:20:38 -15333.593109] SLOW spr round 19 (radius: 5)
[23:21:47 -15333.589611] SLOW spr round 20 (radius: 10)
[23:22:49 -15333.589311] SLOW spr round 21 (radius: 15)
[23:24:50 -15333.508069] SLOW spr round 22 (radius: 20)
[23:27:49 -15329.220097] SLOW spr round 23 (radius: 5)
[23:29:13 -15327.764221] SLOW spr round 24 (radius: 5)
[23:30:22 -15327.753216] SLOW spr round 25 (radius: 10)
[23:31:26 -15327.752430] SLOW spr round 26 (radius: 15)
[23:33:19 -15327.684454] SLOW spr round 27 (radius: 20)
[23:36:13 -15325.685469] SLOW spr round 28 (radius: 5)
[23:37:35 -15325.648972] SLOW spr round 29 (radius: 10)
[23:38:46 -15325.648970] SLOW spr round 30 (radius: 15)
[23:40:39 -15325.648970] SLOW spr round 31 (radius: 20)
[23:43:35 -15325.648970] SLOW spr round 32 (radius: 25)
[23:47:08 -15317.947728] SLOW spr round 33 (radius: 5)
[23:48:33 -15314.543484] SLOW spr round 34 (radius: 5)
[23:49:42 -15314.525153] SLOW spr round 35 (radius: 10)
[23:50:44 -15314.525055] SLOW spr round 36 (radius: 15)
[23:52:37 -15314.006595] SLOW spr round 37 (radius: 5)
[23:53:58 -15313.375903] SLOW spr round 38 (radius: 5)
[23:55:06 -15313.372911] SLOW spr round 39 (radius: 10)
[23:56:07 -15313.372502] SLOW spr round 40 (radius: 15)
[23:58:00 -15313.372391] SLOW spr round 41 (radius: 20)
[24:00:52 -15310.522374] SLOW spr round 42 (radius: 5)
[24:02:15 -15309.708581] SLOW spr round 43 (radius: 5)
[24:03:23 -15309.707228] SLOW spr round 44 (radius: 10)
[24:04:24 -15309.705920] SLOW spr round 45 (radius: 15)
[24:06:19 -15309.705001] SLOW spr round 46 (radius: 20)
[24:09:12 -15309.704996] SLOW spr round 47 (radius: 25)
[24:12:32 -15308.768824] SLOW spr round 48 (radius: 5)
[24:13:53 -15308.768762] SLOW spr round 49 (radius: 10)
[24:15:02 -15308.768756] SLOW spr round 50 (radius: 15)
[24:16:51 -15308.768752] SLOW spr round 51 (radius: 20)
[24:19:47 -15308.768748] SLOW spr round 52 (radius: 25)
[24:23:06 -15308.768745] Model parameter optimization (eps = 0.100000)

[24:23:12] ML tree search #11, logLikelihood: -15308.454610

[24:23:12 -33421.734466] Initial branch length optimization
[24:23:12 -28321.684017] Model parameter optimization (eps = 10.000000)
[24:23:19 -28248.650016] AUTODETECT spr round 1 (radius: 5)
[24:23:56 -23557.391342] AUTODETECT spr round 2 (radius: 10)
[24:24:48 -20035.414984] AUTODETECT spr round 3 (radius: 15)
[24:25:44 -17706.341981] AUTODETECT spr round 4 (radius: 20)
[24:26:49 -17066.143548] AUTODETECT spr round 5 (radius: 25)
[24:28:07 -16858.276240] SPR radius for FAST iterations: 25 (autodetect)
[24:28:07 -16858.276240] Model parameter optimization (eps = 3.000000)
[24:28:15 -16854.895442] FAST spr round 1 (radius: 25)
[24:29:17 -15613.512393] FAST spr round 2 (radius: 25)
[24:30:03 -15450.948301] FAST spr round 3 (radius: 25)
[24:30:44 -15442.532407] FAST spr round 4 (radius: 25)
[24:31:24 -15407.512516] FAST spr round 5 (radius: 25)
[24:32:02 -15362.470896] FAST spr round 6 (radius: 25)
[24:32:39 -15361.365968] FAST spr round 7 (radius: 25)
[24:33:15 -15361.365633] Model parameter optimization (eps = 1.000000)
[24:33:22 -15358.188057] SLOW spr round 1 (radius: 5)
[24:34:19 -15351.581564] SLOW spr round 2 (radius: 5)
[24:35:16 -15350.817948] SLOW spr round 3 (radius: 5)
[24:36:12 -15350.534154] SLOW spr round 4 (radius: 5)
[24:37:07 -15350.521212] SLOW spr round 5 (radius: 10)
[24:38:03 -15348.162217] SLOW spr round 6 (radius: 5)
[24:39:21 -15343.066792] SLOW spr round 7 (radius: 5)
[24:40:28 -15342.811366] SLOW spr round 8 (radius: 5)
[24:41:26 -15342.810987] SLOW spr round 9 (radius: 10)
[24:42:23 -15342.751290] SLOW spr round 10 (radius: 15)
[24:44:29 -15331.918338] SLOW spr round 11 (radius: 5)
[24:45:49 -15329.586143] SLOW spr round 12 (radius: 5)
[24:46:55 -15329.408884] SLOW spr round 13 (radius: 5)
[24:47:53 -15329.408688] SLOW spr round 14 (radius: 10)
[24:48:50 -15329.408592] SLOW spr round 15 (radius: 15)
[24:50:53 -15329.054390] SLOW spr round 16 (radius: 5)
[24:52:10 -15329.054296] SLOW spr round 17 (radius: 10)
[24:53:19 -15327.847453] SLOW spr round 18 (radius: 5)
[24:54:36 -15326.425768] SLOW spr round 19 (radius: 5)
[24:55:42 -15325.022381] SLOW spr round 20 (radius: 5)
[24:56:43 -15323.866316] SLOW spr round 21 (radius: 5)
[24:57:40 -15323.866144] SLOW spr round 22 (radius: 10)
[24:58:38 -15323.866057] SLOW spr round 23 (radius: 15)
[25:00:47 -15323.865933] SLOW spr round 24 (radius: 20)
[25:03:57 -15319.985945] SLOW spr round 25 (radius: 5)
[25:05:20 -15318.843381] SLOW spr round 26 (radius: 5)
[25:06:31 -15317.930084] SLOW spr round 27 (radius: 5)
[25:07:34 -15316.505408] SLOW spr round 28 (radius: 5)
[25:08:32 -15316.453570] SLOW spr round 29 (radius: 10)
[25:09:30 -15314.165930] SLOW spr round 30 (radius: 5)
[25:10:50 -15313.544136] SLOW spr round 31 (radius: 5)
[25:11:57 -15313.486589] SLOW spr round 32 (radius: 10)
[25:12:58 -15313.486443] SLOW spr round 33 (radius: 15)
[25:14:58 -15311.610779] SLOW spr round 34 (radius: 5)
[25:16:19 -15310.090456] SLOW spr round 35 (radius: 5)
[25:17:25 -15310.090142] SLOW spr round 36 (radius: 10)
[25:18:25 -15310.090035] SLOW spr round 37 (radius: 15)
[25:20:19 -15310.006042] SLOW spr round 38 (radius: 20)
[25:23:24 -15308.257020] SLOW spr round 39 (radius: 5)
[25:24:49 -15305.221628] SLOW spr round 40 (radius: 5)
[25:26:00 -15304.639264] SLOW spr round 41 (radius: 5)
[25:27:02 -15304.638464] SLOW spr round 42 (radius: 10)
[25:28:02 -15295.235181] SLOW spr round 43 (radius: 5)
[25:29:21 -15294.535664] SLOW spr round 44 (radius: 5)
[25:30:26 -15294.535621] SLOW spr round 45 (radius: 10)
[25:31:27 -15294.535586] SLOW spr round 46 (radius: 15)
[25:33:35 -15293.791258] SLOW spr round 47 (radius: 5)
[25:34:56 -15293.789221] SLOW spr round 48 (radius: 10)
[25:36:05 -15293.789162] SLOW spr round 49 (radius: 15)
[25:38:02 -15293.609404] SLOW spr round 50 (radius: 5)
[25:39:22 -15293.452001] SLOW spr round 51 (radius: 5)
[25:40:29 -15293.451995] SLOW spr round 52 (radius: 10)
[25:41:29 -15293.451995] SLOW spr round 53 (radius: 15)
[25:43:35 -15293.451995] SLOW spr round 54 (radius: 20)
[25:47:00 -15292.327897] SLOW spr round 55 (radius: 5)
[25:48:25 -15287.753592] SLOW spr round 56 (radius: 5)
[25:49:35 -15287.753399] SLOW spr round 57 (radius: 10)
[25:50:37 -15287.753358] SLOW spr round 58 (radius: 15)
[25:52:43 -15287.267396] SLOW spr round 59 (radius: 5)
[25:54:04 -15287.267391] SLOW spr round 60 (radius: 10)
[25:55:13 -15287.267390] SLOW spr round 61 (radius: 15)
[25:57:11 -15287.267389] SLOW spr round 62 (radius: 20)
[26:00:34 -15287.267389] SLOW spr round 63 (radius: 25)
[26:04:44 -15275.823313] SLOW spr round 64 (radius: 5)
[26:06:12 -15273.416534] SLOW spr round 65 (radius: 5)
[26:07:27 -15272.699392] SLOW spr round 66 (radius: 5)
[26:08:29 -15272.698803] SLOW spr round 67 (radius: 10)
[26:09:29 -15272.698546] SLOW spr round 68 (radius: 15)
[26:11:46 -15272.535373] SLOW spr round 69 (radius: 5)
[26:13:09 -15272.535012] SLOW spr round 70 (radius: 10)
[26:14:20 -15272.534936] SLOW spr round 71 (radius: 15)
[26:16:24 -15272.534891] SLOW spr round 72 (radius: 20)
[26:19:56 -15271.895217] SLOW spr round 73 (radius: 5)
[26:21:23 -15271.507589] SLOW spr round 74 (radius: 5)
[26:22:35 -15271.506634] SLOW spr round 75 (radius: 10)
[26:23:39 -15269.856673] SLOW spr round 76 (radius: 5)
[26:24:58 -15269.856563] SLOW spr round 77 (radius: 10)
[26:26:05 -15269.856560] SLOW spr round 78 (radius: 15)
[26:28:11 -15269.856560] SLOW spr round 79 (radius: 20)
[26:31:48 -15269.127313] SLOW spr round 80 (radius: 5)
[26:33:14 -15268.701485] SLOW spr round 81 (radius: 5)
[26:34:26 -15267.133831] SLOW spr round 82 (radius: 5)
[26:35:31 -15267.132595] SLOW spr round 83 (radius: 10)
[26:36:32 -15267.132403] SLOW spr round 84 (radius: 15)
[26:38:53 -15267.132371] SLOW spr round 85 (radius: 20)
[26:42:22 -15267.132364] SLOW spr round 86 (radius: 25)
[26:46:41 -15266.702076] SLOW spr round 87 (radius: 5)
[26:48:11 -15266.454923] SLOW spr round 88 (radius: 5)
[26:49:23 -15266.454918] SLOW spr round 89 (radius: 10)
[26:50:29 -15266.454918] SLOW spr round 90 (radius: 15)
[26:52:41 -15266.454918] SLOW spr round 91 (radius: 20)
[26:56:12 -15266.454918] SLOW spr round 92 (radius: 25)
[27:00:31 -15266.430110] Model parameter optimization (eps = 0.100000)

[27:00:37] ML tree search #12, logLikelihood: -15265.743873

[27:00:37 -33540.360095] Initial branch length optimization
[27:00:38 -28522.945157] Model parameter optimization (eps = 10.000000)
[27:00:49 -28442.730780] AUTODETECT spr round 1 (radius: 5)
[27:01:28 -23810.208243] AUTODETECT spr round 2 (radius: 10)
[27:02:21 -19735.894510] AUTODETECT spr round 3 (radius: 15)
[27:03:16 -17943.495195] AUTODETECT spr round 4 (radius: 20)
[27:04:29 -17042.482738] AUTODETECT spr round 5 (radius: 25)
[27:05:47 -16725.134149] SPR radius for FAST iterations: 25 (autodetect)
[27:05:47 -16725.134149] Model parameter optimization (eps = 3.000000)
[27:05:51 -16723.865902] FAST spr round 1 (radius: 25)
[27:06:56 -15471.989479] FAST spr round 2 (radius: 25)
[27:07:51 -15332.939685] FAST spr round 3 (radius: 25)
[27:08:43 -15320.953513] FAST spr round 4 (radius: 25)
[27:09:34 -15316.635225] FAST spr round 5 (radius: 25)
[27:10:19 -15314.570416] FAST spr round 6 (radius: 25)
[27:11:03 -15314.570051] Model parameter optimization (eps = 1.000000)
[27:11:11 -15313.363627] SLOW spr round 1 (radius: 5)
[27:12:13 -15306.938756] SLOW spr round 2 (radius: 5)
[27:13:13 -15306.938238] SLOW spr round 3 (radius: 10)
[27:14:18 -15304.400057] SLOW spr round 4 (radius: 5)
[27:15:41 -15302.765323] SLOW spr round 5 (radius: 5)
[27:16:50 -15302.764995] SLOW spr round 6 (radius: 10)
[27:17:56 -15302.764667] SLOW spr round 7 (radius: 15)
[27:20:06 -15293.995151] SLOW spr round 8 (radius: 5)
[27:21:35 -15290.609763] SLOW spr round 9 (radius: 5)
[27:22:47 -15290.609600] SLOW spr round 10 (radius: 10)
[27:23:55 -15290.609505] SLOW spr round 11 (radius: 15)
[27:26:09 -15290.071563] SLOW spr round 12 (radius: 5)
[27:27:42 -15289.271200] SLOW spr round 13 (radius: 5)
[27:28:55 -15289.270987] SLOW spr round 14 (radius: 10)
[27:30:02 -15289.270891] SLOW spr round 15 (radius: 15)
[27:32:08 -15289.270785] SLOW spr round 16 (radius: 20)
[27:35:44 -15269.232152] SLOW spr round 17 (radius: 5)
[27:37:18 -15260.833121] SLOW spr round 18 (radius: 5)
[27:38:36 -15260.336525] SLOW spr round 19 (radius: 5)
[27:39:44 -15260.335989] SLOW spr round 20 (radius: 10)
[27:40:50 -15258.376790] SLOW spr round 21 (radius: 5)
[27:42:16 -15257.663762] SLOW spr round 22 (radius: 5)
[27:43:29 -15257.663552] SLOW spr round 23 (radius: 10)
[27:44:36 -15257.447018] SLOW spr round 24 (radius: 5)
[27:45:59 -15257.446975] SLOW spr round 25 (radius: 10)
[27:47:10 -15257.446966] SLOW spr round 26 (radius: 15)
[27:49:09 -15256.785800] SLOW spr round 27 (radius: 5)
[27:50:37 -15256.181117] SLOW spr round 28 (radius: 5)
[27:51:52 -15256.181047] SLOW spr round 29 (radius: 10)
[27:53:04 -15255.276855] SLOW spr round 30 (radius: 5)
[27:54:31 -15255.275564] SLOW spr round 31 (radius: 10)
[27:55:46 -15255.275388] SLOW spr round 32 (radius: 15)
[27:57:47 -15255.275360] SLOW spr round 33 (radius: 20)
[28:01:25 -15252.444335] SLOW spr round 34 (radius: 5)
[28:02:56 -15252.105393] SLOW spr round 35 (radius: 5)
[28:04:12 -15252.105228] SLOW spr round 36 (radius: 10)
[28:05:21 -15252.105218] SLOW spr round 37 (radius: 15)
[28:07:28 -15251.932177] SLOW spr round 38 (radius: 5)
[28:08:55 -15251.931888] SLOW spr round 39 (radius: 10)
[28:10:10 -15251.931886] SLOW spr round 40 (radius: 15)
[28:12:07 -15251.931886] SLOW spr round 41 (radius: 20)
[28:15:33 -15251.684306] SLOW spr round 42 (radius: 5)
[28:17:03 -15251.667802] SLOW spr round 43 (radius: 10)
[28:18:20 -15251.667677] SLOW spr round 44 (radius: 15)
[28:20:18 -15251.667675] SLOW spr round 45 (radius: 20)
[28:24:01 -15251.293026] SLOW spr round 46 (radius: 5)
[28:25:29 -15251.292696] SLOW spr round 47 (radius: 10)
[28:26:44 -15251.292695] SLOW spr round 48 (radius: 15)
[28:28:40 -15251.292695] SLOW spr round 49 (radius: 20)
[28:32:09 -15250.188256] SLOW spr round 50 (radius: 5)
[28:33:37 -15249.933807] SLOW spr round 51 (radius: 5)
[28:34:52 -15249.931778] SLOW spr round 52 (radius: 10)
[28:36:00 -15249.930978] SLOW spr round 53 (radius: 15)
[28:38:02 -15249.930614] SLOW spr round 54 (radius: 20)
[28:41:29 -15249.875017] SLOW spr round 55 (radius: 25)
[28:46:01 -15241.159304] SLOW spr round 56 (radius: 5)
[28:47:34 -15214.123567] SLOW spr round 57 (radius: 5)
[28:48:52 -15213.458959] SLOW spr round 58 (radius: 5)
[28:50:01 -15213.458789] SLOW spr round 59 (radius: 10)
[28:51:13 -15209.899072] SLOW spr round 60 (radius: 5)
[28:52:46 -15208.167715] SLOW spr round 61 (radius: 5)
[28:54:06 -15206.947786] SLOW spr round 62 (radius: 5)
[28:55:14 -15206.947387] SLOW spr round 63 (radius: 10)
[28:56:17 -15206.947331] SLOW spr round 64 (radius: 15)
[28:58:26 -15205.885421] SLOW spr round 65 (radius: 5)
[28:59:52 -15205.737535] SLOW spr round 66 (radius: 5)
[29:01:05 -15205.737465] SLOW spr round 67 (radius: 10)
[29:02:09 -15205.737429] SLOW spr round 68 (radius: 15)
[29:04:11 -15205.737394] SLOW spr round 69 (radius: 20)
[29:07:35 -15205.737358] SLOW spr round 70 (radius: 25)
[29:12:01 -15205.174455] SLOW spr round 71 (radius: 5)
[29:13:30 -15205.174420] SLOW spr round 72 (radius: 10)
[29:14:46 -15205.174386] SLOW spr round 73 (radius: 15)
[29:16:41 -15205.174352] SLOW spr round 74 (radius: 20)
[29:20:09 -15205.174318] SLOW spr round 75 (radius: 25)
[29:24:39 -15204.764259] SLOW spr round 76 (radius: 5)
[29:26:09 -15202.984002] SLOW spr round 77 (radius: 5)
[29:27:26 -15201.135558] SLOW spr round 78 (radius: 5)
[29:28:34 -15201.134658] SLOW spr round 79 (radius: 10)
[29:29:36 -15201.134610] SLOW spr round 80 (radius: 15)
[29:31:39 -15201.134576] SLOW spr round 81 (radius: 20)
[29:35:00 -15201.134543] SLOW spr round 82 (radius: 25)
[29:39:24 -15200.283973] SLOW spr round 83 (radius: 5)
[29:40:53 -15200.283342] SLOW spr round 84 (radius: 10)
[29:42:08 -15200.283195] SLOW spr round 85 (radius: 15)
[29:44:03 -15199.000323] SLOW spr round 86 (radius: 5)
[29:45:29 -15199.000282] SLOW spr round 87 (radius: 10)
[29:46:42 -15199.000249] SLOW spr round 88 (radius: 15)
[29:48:36 -15199.000216] SLOW spr round 89 (radius: 20)
[29:52:07 -15199.000184] SLOW spr round 90 (radius: 25)
[29:56:32 -15198.604730] SLOW spr round 91 (radius: 5)
[29:58:00 -15198.601047] SLOW spr round 92 (radius: 10)
[29:59:15 -15198.600777] SLOW spr round 93 (radius: 15)
[30:01:10 -15198.600726] SLOW spr round 94 (radius: 20)
[30:04:43 -15198.600692] SLOW spr round 95 (radius: 25)
[30:09:12 -15198.510712] Model parameter optimization (eps = 0.100000)

[30:09:18] ML tree search #13, logLikelihood: -15197.967553

[30:09:18 -33324.039425] Initial branch length optimization
[30:09:19 -28363.141892] Model parameter optimization (eps = 10.000000)
[30:09:27 -28269.877146] AUTODETECT spr round 1 (radius: 5)
[30:10:07 -23708.428108] AUTODETECT spr round 2 (radius: 10)
[30:11:00 -19809.046618] AUTODETECT spr round 3 (radius: 15)
[30:11:58 -17803.482054] AUTODETECT spr round 4 (radius: 20)
[30:13:12 -16789.550024] AUTODETECT spr round 5 (radius: 25)
[30:14:38 -16574.367653] SPR radius for FAST iterations: 25 (autodetect)
[30:14:38 -16574.367653] Model parameter optimization (eps = 3.000000)
[30:14:47 -16566.821870] FAST spr round 1 (radius: 25)
[30:15:55 -15384.391740] FAST spr round 2 (radius: 25)
[30:16:53 -15307.925435] FAST spr round 3 (radius: 25)
[30:17:45 -15300.735374] FAST spr round 4 (radius: 25)
[30:18:32 -15300.643444] Model parameter optimization (eps = 1.000000)
[30:18:34 -15300.541129] SLOW spr round 1 (radius: 5)
[30:19:45 -15292.866924] SLOW spr round 2 (radius: 5)
[30:20:51 -15287.395760] SLOW spr round 3 (radius: 5)
[30:21:54 -15287.394148] SLOW spr round 4 (radius: 10)
[30:22:59 -15284.059057] SLOW spr round 5 (radius: 5)
[30:24:19 -15283.018698] SLOW spr round 6 (radius: 5)
[30:25:28 -15281.165703] SLOW spr round 7 (radius: 5)
[30:26:29 -15281.156270] SLOW spr round 8 (radius: 10)
[30:27:29 -15280.565107] SLOW spr round 9 (radius: 5)
[30:28:47 -15280.564288] SLOW spr round 10 (radius: 10)
[30:29:54 -15279.574441] SLOW spr round 11 (radius: 5)
[30:31:11 -15279.574232] SLOW spr round 12 (radius: 10)
[30:32:17 -15279.574061] SLOW spr round 13 (radius: 15)
[30:34:11 -15273.442660] SLOW spr round 14 (radius: 5)
[30:35:35 -15273.407912] SLOW spr round 15 (radius: 10)
[30:36:43 -15272.976412] SLOW spr round 16 (radius: 5)
[30:37:58 -15272.976024] SLOW spr round 17 (radius: 10)
[30:39:03 -15272.975958] SLOW spr round 18 (radius: 15)
[30:40:49 -15271.878248] SLOW spr round 19 (radius: 5)
[30:42:12 -15271.467084] SLOW spr round 20 (radius: 5)
[30:43:21 -15271.460558] SLOW spr round 21 (radius: 10)
[30:44:23 -15271.459901] SLOW spr round 22 (radius: 15)
[30:46:11 -15271.459802] SLOW spr round 23 (radius: 20)
[30:49:09 -15265.878079] SLOW spr round 24 (radius: 5)
[30:50:41 -15262.426937] SLOW spr round 25 (radius: 5)
[30:51:55 -15262.268347] SLOW spr round 26 (radius: 5)
[30:52:59 -15261.849382] SLOW spr round 27 (radius: 5)
[30:54:01 -15260.027098] SLOW spr round 28 (radius: 5)
[30:54:59 -15260.026633] SLOW spr round 29 (radius: 10)
[30:55:59 -15259.069333] SLOW spr round 30 (radius: 5)
[30:57:17 -15259.069122] SLOW spr round 31 (radius: 10)
[30:58:24 -15259.069077] SLOW spr round 32 (radius: 15)
[31:00:11 -15259.069055] SLOW spr round 33 (radius: 20)
[31:03:19 -15249.765491] SLOW spr round 34 (radius: 5)
[31:04:45 -15238.162913] SLOW spr round 35 (radius: 5)
[31:05:57 -15236.870318] SLOW spr round 36 (radius: 5)
[31:07:04 -15235.810080] SLOW spr round 37 (radius: 5)
[31:08:05 -15235.810027] SLOW spr round 38 (radius: 10)
[31:09:04 -15235.810009] SLOW spr round 39 (radius: 15)
[31:11:06 -15235.809991] SLOW spr round 40 (radius: 20)
[31:14:08 -15235.175863] SLOW spr round 41 (radius: 5)
[31:15:32 -15235.160380] SLOW spr round 42 (radius: 10)
[31:16:42 -15235.160362] SLOW spr round 43 (radius: 15)
[31:18:35 -15235.160344] SLOW spr round 44 (radius: 20)
[31:21:46 -15235.160326] SLOW spr round 45 (radius: 25)
[31:25:25 -15225.969334] SLOW spr round 46 (radius: 5)
[31:26:53 -15224.051334] SLOW spr round 47 (radius: 5)
[31:28:04 -15223.955207] SLOW spr round 48 (radius: 10)
[31:29:06 -15223.955155] SLOW spr round 49 (radius: 15)
[31:31:00 -15223.955137] SLOW spr round 50 (radius: 20)
[31:34:02 -15223.955119] SLOW spr round 51 (radius: 25)
[31:37:41 -15221.805491] SLOW spr round 52 (radius: 5)
[31:39:07 -15221.605389] SLOW spr round 53 (radius: 5)
[31:40:19 -15221.605318] SLOW spr round 54 (radius: 10)
[31:41:22 -15221.605299] SLOW spr round 55 (radius: 15)
[31:43:17 -15221.605281] SLOW spr round 56 (radius: 20)
[31:46:21 -15221.605264] SLOW spr round 57 (radius: 25)
[31:50:11 -15221.331887] SLOW spr round 58 (radius: 5)
[31:51:36 -15221.330029] SLOW spr round 59 (radius: 10)
[31:52:45 -15221.329624] SLOW spr round 60 (radius: 15)
[31:54:31 -15221.329535] SLOW spr round 61 (radius: 20)
[31:57:32 -15221.329514] SLOW spr round 62 (radius: 25)
[32:01:08 -15221.207415] SLOW spr round 63 (radius: 5)
[32:02:36 -15220.438441] SLOW spr round 64 (radius: 5)
[32:03:49 -15220.348504] SLOW spr round 65 (radius: 10)
[32:04:52 -15220.347316] SLOW spr round 66 (radius: 15)
[32:06:46 -15220.347279] SLOW spr round 67 (radius: 20)
[32:09:48 -15220.347267] SLOW spr round 68 (radius: 25)
[32:13:23 -15220.347258] Model parameter optimization (eps = 0.100000)

[32:13:29] ML tree search #14, logLikelihood: -15220.019148

[32:13:29 -33381.671180] Initial branch length optimization
[32:13:30 -28371.039337] Model parameter optimization (eps = 10.000000)
[32:13:40 -28311.144196] AUTODETECT spr round 1 (radius: 5)
[32:14:20 -23701.111786] AUTODETECT spr round 2 (radius: 10)
[32:15:20 -19997.672557] AUTODETECT spr round 3 (radius: 15)
[32:16:21 -17987.281129] AUTODETECT spr round 4 (radius: 20)
[32:17:45 -17210.127125] AUTODETECT spr round 5 (radius: 25)
[32:19:07 -16746.172443] SPR radius for FAST iterations: 25 (autodetect)
[32:19:07 -16746.172443] Model parameter optimization (eps = 3.000000)
[32:19:12 -16743.404383] FAST spr round 1 (radius: 25)
[32:20:19 -15458.056358] FAST spr round 2 (radius: 25)
[32:21:25 -15313.908983] FAST spr round 3 (radius: 25)
[32:22:18 -15286.501689] FAST spr round 4 (radius: 25)
[32:23:05 -15270.950896] FAST spr round 5 (radius: 25)
[32:23:49 -15266.559153] FAST spr round 6 (radius: 25)
[32:24:31 -15266.554609] Model parameter optimization (eps = 1.000000)
[32:24:37 -15265.025470] SLOW spr round 1 (radius: 5)
[32:25:31 -15259.029385] SLOW spr round 2 (radius: 5)
[32:26:26 -15258.815882] SLOW spr round 3 (radius: 5)
[32:27:21 -15258.815430] SLOW spr round 4 (radius: 10)
[32:28:17 -15257.642449] SLOW spr round 5 (radius: 5)
[32:29:26 -15257.640601] SLOW spr round 6 (radius: 10)
[32:30:28 -15256.970967] SLOW spr round 7 (radius: 5)
[32:31:36 -15256.969711] SLOW spr round 8 (radius: 10)
[32:32:35 -15256.969246] SLOW spr round 9 (radius: 15)
[32:34:18 -15249.262434] SLOW spr round 10 (radius: 5)
[32:35:30 -15246.393610] SLOW spr round 11 (radius: 5)
[32:36:33 -15245.263449] SLOW spr round 12 (radius: 5)
[32:37:31 -15245.113595] SLOW spr round 13 (radius: 5)
[32:38:24 -15245.113322] SLOW spr round 14 (radius: 10)
[32:39:17 -15244.115958] SLOW spr round 15 (radius: 5)
[32:40:28 -15242.046258] SLOW spr round 16 (radius: 5)
[32:41:27 -15242.046094] SLOW spr round 17 (radius: 10)
[32:42:22 -15242.046044] SLOW spr round 18 (radius: 15)
[32:44:09 -15240.806747] SLOW spr round 19 (radius: 5)
[32:45:23 -15240.806700] SLOW spr round 20 (radius: 10)
[32:46:27 -15240.806692] SLOW spr round 21 (radius: 15)
[32:48:02 -15240.794134] SLOW spr round 22 (radius: 20)
[32:50:35 -15202.363071] SLOW spr round 23 (radius: 5)
[32:51:47 -15172.276580] SLOW spr round 24 (radius: 5)
[32:52:47 -15172.276533] SLOW spr round 25 (radius: 10)
[32:53:41 -15171.333286] SLOW spr round 26 (radius: 5)
[32:54:47 -15171.310157] SLOW spr round 27 (radius: 10)
[32:55:46 -15171.310107] SLOW spr round 28 (radius: 15)
[32:57:21 -15169.861470] SLOW spr round 29 (radius: 5)
[32:58:30 -15169.608557] SLOW spr round 30 (radius: 5)
[32:59:29 -15169.607079] SLOW spr round 31 (radius: 10)
[33:00:23 -15169.607020] SLOW spr round 32 (radius: 15)
[33:01:57 -15169.607007] SLOW spr round 33 (radius: 20)
[33:04:15 -15168.445830] SLOW spr round 34 (radius: 5)
[33:05:24 -15168.121735] SLOW spr round 35 (radius: 5)
[33:06:25 -15167.764034] SLOW spr round 36 (radius: 5)
[33:07:20 -15167.762755] SLOW spr round 37 (radius: 10)
[33:08:11 -15167.762721] SLOW spr round 38 (radius: 15)
[33:09:50 -15167.762713] SLOW spr round 39 (radius: 20)
[33:12:24 -15166.204104] SLOW spr round 40 (radius: 5)
[33:13:37 -15164.884052] SLOW spr round 41 (radius: 5)
[33:14:39 -15164.884044] SLOW spr round 42 (radius: 10)
[33:15:32 -15164.884036] SLOW spr round 43 (radius: 15)
[33:17:09 -15164.867098] SLOW spr round 44 (radius: 20)
[33:19:35 -15164.866890] SLOW spr round 45 (radius: 25)
[33:22:28 -15154.175480] SLOW spr round 46 (radius: 5)
[33:23:42 -15151.956635] SLOW spr round 47 (radius: 5)
[33:24:46 -15149.749182] SLOW spr round 48 (radius: 5)
[33:25:42 -15149.654029] SLOW spr round 49 (radius: 10)
[33:26:39 -15145.124296] SLOW spr round 50 (radius: 5)
[33:27:49 -15143.454137] SLOW spr round 51 (radius: 5)
[33:28:48 -15143.452886] SLOW spr round 52 (radius: 10)
[33:29:43 -15143.452860] SLOW spr round 53 (radius: 15)
[33:31:20 -15142.190444] SLOW spr round 54 (radius: 5)
[33:32:29 -15142.190205] SLOW spr round 55 (radius: 10)
[33:33:29 -15142.190192] SLOW spr round 56 (radius: 15)
[33:35:05 -15142.190184] SLOW spr round 57 (radius: 20)
[33:37:49 -15141.737113] SLOW spr round 58 (radius: 5)
[33:39:03 -15141.058548] SLOW spr round 59 (radius: 5)
[33:40:13 -15139.860660] SLOW spr round 60 (radius: 5)
[33:41:15 -15139.859020] SLOW spr round 61 (radius: 10)
[33:42:13 -15139.858845] SLOW spr round 62 (radius: 15)
[33:43:54 -15139.858819] SLOW spr round 63 (radius: 20)
[33:46:30 -15138.585272] SLOW spr round 64 (radius: 5)
[33:47:38 -15138.584901] SLOW spr round 65 (radius: 10)
[33:48:37 -15138.584888] SLOW spr round 66 (radius: 15)
[33:50:07 -15138.584880] SLOW spr round 67 (radius: 20)
[33:52:44 -15137.742736] SLOW spr round 68 (radius: 5)
[33:53:54 -15136.957604] SLOW spr round 69 (radius: 5)
[33:54:58 -15136.948400] SLOW spr round 70 (radius: 10)
[33:55:54 -15136.947920] SLOW spr round 71 (radius: 15)
[33:57:30 -15136.567528] SLOW spr round 72 (radius: 5)
[33:58:40 -15134.997044] SLOW spr round 73 (radius: 5)
[33:59:42 -15134.574424] SLOW spr round 74 (radius: 5)
[34:00:38 -15134.551022] SLOW spr round 75 (radius: 10)
[34:01:31 -15133.731512] SLOW spr round 76 (radius: 5)
[34:02:37 -15133.731493] SLOW spr round 77 (radius: 10)
[34:03:33 -15133.731484] SLOW spr round 78 (radius: 15)
[34:05:03 -15133.731476] SLOW spr round 79 (radius: 20)
[34:07:34 -15133.731468] SLOW spr round 80 (radius: 25)
[34:10:35 -15129.601826] SLOW spr round 81 (radius: 5)
[34:11:45 -15129.601125] SLOW spr round 82 (radius: 10)
[34:12:44 -15129.601097] SLOW spr round 83 (radius: 15)
[34:14:12 -15129.601088] SLOW spr round 84 (radius: 20)
[34:16:39 -15129.601079] SLOW spr round 85 (radius: 25)
[34:19:29 -15129.472277] SLOW spr round 86 (radius: 5)
[34:20:38 -15128.921290] SLOW spr round 87 (radius: 5)
[34:21:40 -15128.921116] SLOW spr round 88 (radius: 10)
[34:22:35 -15128.921106] SLOW spr round 89 (radius: 15)
[34:24:07 -15128.921097] SLOW spr round 90 (radius: 20)
[34:26:34 -15128.921089] SLOW spr round 91 (radius: 25)
[34:29:23 -15128.921081] Model parameter optimization (eps = 0.100000)

[34:29:28] ML tree search #15, logLikelihood: -15128.336173

[34:29:28 -33446.343407] Initial branch length optimization
[34:29:28 -28332.784660] Model parameter optimization (eps = 10.000000)
[34:29:39 -28220.648500] AUTODETECT spr round 1 (radius: 5)
[34:30:18 -23729.808593] AUTODETECT spr round 2 (radius: 10)
[34:31:08 -19878.547210] AUTODETECT spr round 3 (radius: 15)
[34:32:05 -18000.339306] AUTODETECT spr round 4 (radius: 20)
[34:33:15 -17082.420422] AUTODETECT spr round 5 (radius: 25)
[34:34:19 -16855.025881] SPR radius for FAST iterations: 25 (autodetect)
[34:34:19 -16855.025881] Model parameter optimization (eps = 3.000000)
[34:34:25 -16852.658843] FAST spr round 1 (radius: 25)
[34:35:34 -15636.708417] FAST spr round 2 (radius: 25)
[34:36:34 -15467.118621] FAST spr round 3 (radius: 25)
[34:37:27 -15437.733282] FAST spr round 4 (radius: 25)
[34:38:15 -15434.156214] FAST spr round 5 (radius: 25)
[34:39:00 -15431.838494] FAST spr round 6 (radius: 25)
[34:39:44 -15428.851409] FAST spr round 7 (radius: 25)
[34:40:26 -15428.057120] FAST spr round 8 (radius: 25)
[34:41:08 -15428.056383] Model parameter optimization (eps = 1.000000)
[34:41:14 -15424.058869] SLOW spr round 1 (radius: 5)
[34:42:17 -15420.928636] SLOW spr round 2 (radius: 5)
[34:43:19 -15420.028374] SLOW spr round 3 (radius: 5)
[34:44:19 -15420.028007] SLOW spr round 4 (radius: 10)
[34:45:21 -15418.813499] SLOW spr round 5 (radius: 5)
[34:46:44 -15415.326334] SLOW spr round 6 (radius: 5)
[34:47:56 -15415.298914] SLOW spr round 7 (radius: 10)
[34:49:01 -15415.019805] SLOW spr round 8 (radius: 5)
[34:50:26 -15411.447145] SLOW spr round 9 (radius: 5)
[34:51:38 -15411.321141] SLOW spr round 10 (radius: 5)
[34:52:43 -15411.321003] SLOW spr round 11 (radius: 10)
[34:53:45 -15411.320935] SLOW spr round 12 (radius: 15)
[34:56:11 -15403.341618] SLOW spr round 13 (radius: 5)
[34:57:39 -15401.549214] SLOW spr round 14 (radius: 5)
[34:58:51 -15401.548617] SLOW spr round 15 (radius: 10)
[34:59:57 -15400.208386] SLOW spr round 16 (radius: 5)
[35:01:18 -15400.208260] SLOW spr round 17 (radius: 10)
[35:02:28 -15400.208177] SLOW spr round 18 (radius: 15)
[35:04:36 -15398.826186] SLOW spr round 19 (radius: 5)
[35:06:11 -15398.209704] SLOW spr round 20 (radius: 5)
[35:07:29 -15398.209198] SLOW spr round 21 (radius: 10)
[35:08:37 -15398.208995] SLOW spr round 22 (radius: 15)
[35:10:52 -15396.844757] SLOW spr round 23 (radius: 5)
[35:12:19 -15394.688468] SLOW spr round 24 (radius: 5)
[35:13:30 -15394.688264] SLOW spr round 25 (radius: 10)
[35:14:33 -15394.688186] SLOW spr round 26 (radius: 15)
[35:16:47 -15394.482000] SLOW spr round 27 (radius: 5)
[35:18:11 -15394.481867] SLOW spr round 28 (radius: 10)
[35:19:23 -15394.481771] SLOW spr round 29 (radius: 15)
[35:21:30 -15394.481681] SLOW spr round 30 (radius: 20)
[35:25:04 -15361.900255] SLOW spr round 31 (radius: 5)
[35:26:32 -15360.091266] SLOW spr round 32 (radius: 5)
[35:27:47 -15359.680407] SLOW spr round 33 (radius: 5)
[35:28:53 -15359.680299] SLOW spr round 34 (radius: 10)
[35:29:56 -15359.616675] SLOW spr round 35 (radius: 15)
[35:32:06 -15359.613981] SLOW spr round 36 (radius: 20)
[35:35:32 -15357.888390] SLOW spr round 37 (radius: 5)
[35:37:05 -15357.888200] SLOW spr round 38 (radius: 10)
[35:38:21 -15357.888133] SLOW spr round 39 (radius: 15)
[35:40:18 -15357.888099] SLOW spr round 40 (radius: 20)
[35:43:41 -15357.591437] SLOW spr round 41 (radius: 5)
[35:45:07 -15357.101218] SLOW spr round 42 (radius: 5)
[35:46:18 -15357.101065] SLOW spr round 43 (radius: 10)
[35:47:23 -15357.101034] SLOW spr round 44 (radius: 15)
[35:49:35 -15355.026166] SLOW spr round 45 (radius: 5)
[35:51:00 -15354.731973] SLOW spr round 46 (radius: 5)
[35:52:13 -15354.731947] SLOW spr round 47 (radius: 10)
[35:53:18 -15354.731946] SLOW spr round 48 (radius: 15)
[35:55:31 -15354.731946] SLOW spr round 49 (radius: 20)
[35:59:04 -15353.780575] SLOW spr round 50 (radius: 5)
[36:00:29 -15353.780537] SLOW spr round 51 (radius: 10)
[36:01:42 -15353.780536] SLOW spr round 52 (radius: 15)
[36:03:45 -15353.780536] SLOW spr round 53 (radius: 20)
[36:07:27 -15350.774929] SLOW spr round 54 (radius: 5)
[36:08:59 -15349.167980] SLOW spr round 55 (radius: 5)
[36:10:11 -15349.167299] SLOW spr round 56 (radius: 10)
[36:11:14 -15349.043135] SLOW spr round 57 (radius: 5)
[36:12:33 -15349.042835] SLOW spr round 58 (radius: 10)
[36:13:40 -15349.042773] SLOW spr round 59 (radius: 15)
[36:15:45 -15342.149824] SLOW spr round 60 (radius: 5)
[36:17:07 -15341.935037] SLOW spr round 61 (radius: 5)
[36:18:16 -15341.934825] SLOW spr round 62 (radius: 10)
[36:19:20 -15341.296140] SLOW spr round 63 (radius: 5)
[36:20:38 -15341.295230] SLOW spr round 64 (radius: 10)
[36:21:45 -15341.295214] SLOW spr round 65 (radius: 15)
[36:23:44 -15341.295213] SLOW spr round 66 (radius: 20)
[36:27:02 -15341.160009] SLOW spr round 67 (radius: 5)
[36:28:25 -15341.157434] SLOW spr round 68 (radius: 10)
[36:29:36 -15341.156932] SLOW spr round 69 (radius: 15)
[36:31:35 -15341.156835] SLOW spr round 70 (radius: 20)
[36:35:02 -15341.156817] SLOW spr round 71 (radius: 25)
[36:38:55 -15332.099674] SLOW spr round 72 (radius: 5)
[36:40:20 -15331.931408] SLOW spr round 73 (radius: 5)
[36:41:34 -15331.812584] SLOW spr round 74 (radius: 5)
[36:42:38 -15331.812227] SLOW spr round 75 (radius: 10)
[36:43:37 -15331.812206] SLOW spr round 76 (radius: 15)
[36:45:49 -15330.352977] SLOW spr round 77 (radius: 5)
[36:47:10 -15330.352960] SLOW spr round 78 (radius: 10)
[36:48:20 -15330.352959] SLOW spr round 79 (radius: 15)
[36:50:17 -15330.352959] SLOW spr round 80 (radius: 20)
[36:53:31 -15330.352959] SLOW spr round 81 (radius: 25)
[36:57:14 -15329.492136] SLOW spr round 82 (radius: 5)
[36:58:36 -15329.492135] SLOW spr round 83 (radius: 10)
[36:59:47 -15329.492135] SLOW spr round 84 (radius: 15)
[37:01:40 -15329.492135] SLOW spr round 85 (radius: 20)
[37:04:59 -15329.492135] SLOW spr round 86 (radius: 25)
[37:08:39 -15329.386110] SLOW spr round 87 (radius: 5)
[37:10:02 -15329.001802] SLOW spr round 88 (radius: 5)
[37:11:11 -15329.001786] SLOW spr round 89 (radius: 10)
[37:12:12 -15329.001786] SLOW spr round 90 (radius: 15)
[37:14:11 -15329.001786] SLOW spr round 91 (radius: 20)
[37:17:18 -15329.001786] SLOW spr round 92 (radius: 25)
[37:20:57 -15329.001786] Model parameter optimization (eps = 0.100000)

[37:21:04] ML tree search #16, logLikelihood: -15328.132264

[37:21:04 -33354.413698] Initial branch length optimization
[37:21:05 -28408.887584] Model parameter optimization (eps = 10.000000)
[37:21:14 -28354.939390] AUTODETECT spr round 1 (radius: 5)
[37:21:55 -23353.010810] AUTODETECT spr round 2 (radius: 10)
[37:22:45 -19820.874148] AUTODETECT spr round 3 (radius: 15)
[37:23:41 -18059.814620] AUTODETECT spr round 4 (radius: 20)
[37:24:55 -17235.225714] AUTODETECT spr round 5 (radius: 25)
[37:26:20 -17085.294237] SPR radius for FAST iterations: 25 (autodetect)
[37:26:20 -17085.294237] Model parameter optimization (eps = 3.000000)
[37:26:24 -17083.520965] FAST spr round 1 (radius: 25)
[37:27:34 -15534.954148] FAST spr round 2 (radius: 25)
[37:28:36 -15404.644272] FAST spr round 3 (radius: 25)
[37:29:30 -15388.147750] FAST spr round 4 (radius: 25)
[37:30:19 -15384.375264] FAST spr round 5 (radius: 25)
[37:31:09 -15384.374899] Model parameter optimization (eps = 1.000000)
[37:31:13 -15383.696124] SLOW spr round 1 (radius: 5)
[37:32:21 -15376.728305] SLOW spr round 2 (radius: 5)
[37:33:29 -15372.781950] SLOW spr round 3 (radius: 5)
[37:34:35 -15370.390779] SLOW spr round 4 (radius: 5)
[37:35:38 -15370.249202] SLOW spr round 5 (radius: 5)
[37:36:40 -15368.664434] SLOW spr round 6 (radius: 5)
[37:37:41 -15368.618718] SLOW spr round 7 (radius: 10)
[37:38:44 -15363.255473] SLOW spr round 8 (radius: 5)
[37:40:06 -15362.479915] SLOW spr round 9 (radius: 5)
[37:41:15 -15362.479837] SLOW spr round 10 (radius: 10)
[37:42:18 -15361.260156] SLOW spr round 11 (radius: 5)
[37:43:42 -15360.708082] SLOW spr round 12 (radius: 5)
[37:44:56 -15359.988384] SLOW spr round 13 (radius: 5)
[37:46:04 -15359.502411] SLOW spr round 14 (radius: 5)
[37:47:06 -15359.502349] SLOW spr round 15 (radius: 10)
[37:48:08 -15359.502338] SLOW spr round 16 (radius: 15)
[37:49:58 -15356.935010] SLOW spr round 17 (radius: 5)
[37:51:24 -15355.668906] SLOW spr round 18 (radius: 5)
[37:52:35 -15355.668353] SLOW spr round 19 (radius: 10)
[37:53:39 -15355.668075] SLOW spr round 20 (radius: 15)
[37:55:24 -15355.503355] SLOW spr round 21 (radius: 5)
[37:56:49 -15354.641482] SLOW spr round 22 (radius: 5)
[37:58:02 -15354.640289] SLOW spr round 23 (radius: 10)
[37:59:09 -15354.639994] SLOW spr round 24 (radius: 15)
[38:01:03 -15354.639905] SLOW spr round 25 (radius: 20)
[38:03:39 -15348.396281] SLOW spr round 26 (radius: 5)
[38:05:04 -15347.739468] SLOW spr round 27 (radius: 5)
[38:06:16 -15347.739342] SLOW spr round 28 (radius: 10)
[38:07:24 -15308.706060] SLOW spr round 29 (radius: 5)
[38:08:48 -15297.353699] SLOW spr round 30 (radius: 5)
[38:09:59 -15294.533357] SLOW spr round 31 (radius: 5)
[38:11:08 -15294.287452] SLOW spr round 32 (radius: 5)
[38:12:11 -15294.287098] SLOW spr round 33 (radius: 10)
[38:13:14 -15291.683117] SLOW spr round 34 (radius: 5)
[38:14:35 -15291.683100] SLOW spr round 35 (radius: 10)
[38:15:43 -15291.683097] SLOW spr round 36 (radius: 15)
[38:17:28 -15291.683094] SLOW spr round 37 (radius: 20)
[38:20:03 -15291.045406] SLOW spr round 38 (radius: 5)
[38:21:29 -15290.600121] SLOW spr round 39 (radius: 5)
[38:22:41 -15290.599982] SLOW spr round 40 (radius: 10)
[38:23:45 -15290.033887] SLOW spr round 41 (radius: 5)
[38:25:05 -15290.033518] SLOW spr round 42 (radius: 10)
[38:26:13 -15290.033512] SLOW spr round 43 (radius: 15)
[38:28:05 -15290.033509] SLOW spr round 44 (radius: 20)
[38:30:47 -15288.781489] SLOW spr round 45 (radius: 5)
[38:32:13 -15288.778241] SLOW spr round 46 (radius: 10)
[38:33:24 -15288.778190] SLOW spr round 47 (radius: 15)
[38:35:07 -15288.778184] SLOW spr round 48 (radius: 20)
[38:37:47 -15287.518274] SLOW spr round 49 (radius: 5)
[38:39:14 -15287.518113] SLOW spr round 50 (radius: 10)
[38:40:27 -15287.518077] SLOW spr round 51 (radius: 15)
[38:42:13 -15287.518067] SLOW spr round 52 (radius: 20)
[38:44:55 -15287.518062] SLOW spr round 53 (radius: 25)
[38:48:23 -15281.686720] SLOW spr round 54 (radius: 5)
[38:49:52 -15281.626557] SLOW spr round 55 (radius: 10)
[38:51:06 -15278.676746] SLOW spr round 56 (radius: 5)
[38:52:25 -15278.571471] SLOW spr round 57 (radius: 5)
[38:53:33 -15278.568900] SLOW spr round 58 (radius: 10)
[38:54:36 -15278.568896] SLOW spr round 59 (radius: 15)
[38:56:38 -15276.142695] SLOW spr round 60 (radius: 5)
[38:58:11 -15275.372796] SLOW spr round 61 (radius: 5)
[38:59:27 -15274.823240] SLOW spr round 62 (radius: 5)
[39:00:32 -15274.823011] SLOW spr round 63 (radius: 10)
[39:01:33 -15274.822932] SLOW spr round 64 (radius: 15)
[39:03:25 -15274.822898] SLOW spr round 65 (radius: 20)
[39:06:07 -15274.822879] SLOW spr round 66 (radius: 25)
[39:09:41 -15272.223118] SLOW spr round 67 (radius: 5)
[39:11:09 -15270.544134] SLOW spr round 68 (radius: 5)
[39:12:23 -15270.543460] SLOW spr round 69 (radius: 10)
[39:13:28 -15270.543350] SLOW spr round 70 (radius: 15)
[39:15:17 -15270.543329] SLOW spr round 71 (radius: 20)
[39:18:00 -15270.543320] SLOW spr round 72 (radius: 25)
[39:21:29 -15270.244196] SLOW spr round 73 (radius: 5)
[39:23:00 -15270.244178] SLOW spr round 74 (radius: 10)
[39:24:19 -15270.244171] SLOW spr round 75 (radius: 15)
[39:26:08 -15270.244164] SLOW spr round 76 (radius: 20)
[39:28:52 -15269.610883] SLOW spr round 77 (radius: 5)
[39:30:17 -15269.610876] SLOW spr round 78 (radius: 10)
[39:31:28 -15269.610869] SLOW spr round 79 (radius: 15)
[39:33:13 -15269.610862] SLOW spr round 80 (radius: 20)
[39:35:59 -15269.610855] SLOW spr round 81 (radius: 25)
[39:39:30 -15269.610848] Model parameter optimization (eps = 0.100000)

[39:39:36] ML tree search #17, logLikelihood: -15269.099231

[39:39:36 -33382.020428] Initial branch length optimization
[39:39:37 -28359.155587] Model parameter optimization (eps = 10.000000)
[39:39:48 -28224.505764] AUTODETECT spr round 1 (radius: 5)
[39:40:28 -23678.033251] AUTODETECT spr round 2 (radius: 10)
[39:41:23 -19945.059398] AUTODETECT spr round 3 (radius: 15)
[39:42:17 -18329.937522] AUTODETECT spr round 4 (radius: 20)
[39:43:26 -17382.502429] AUTODETECT spr round 5 (radius: 25)
[39:44:40 -16923.243238] SPR radius for FAST iterations: 25 (autodetect)
[39:44:40 -16923.243238] Model parameter optimization (eps = 3.000000)
[39:44:49 -16867.185972] FAST spr round 1 (radius: 25)
[39:45:57 -15533.673070] FAST spr round 2 (radius: 25)
[39:46:50 -15338.792479] FAST spr round 3 (radius: 25)
[39:47:38 -15306.692527] FAST spr round 4 (radius: 25)
[39:48:23 -15298.434727] FAST spr round 5 (radius: 25)
[39:49:05 -15298.434349] Model parameter optimization (eps = 1.000000)
[39:49:11 -15297.227009] SLOW spr round 1 (radius: 5)
[39:50:18 -15292.673903] SLOW spr round 2 (radius: 5)
[39:51:26 -15290.611956] SLOW spr round 3 (radius: 5)
[39:52:33 -15289.661217] SLOW spr round 4 (radius: 5)
[39:53:38 -15289.636264] SLOW spr round 5 (radius: 10)
[39:54:41 -15283.219861] SLOW spr round 6 (radius: 5)
[39:56:03 -15281.145570] SLOW spr round 7 (radius: 5)
[39:57:14 -15280.189519] SLOW spr round 8 (radius: 5)
[39:58:16 -15280.189036] SLOW spr round 9 (radius: 10)
[39:59:16 -15279.047326] SLOW spr round 10 (radius: 5)
[40:00:35 -15279.043957] SLOW spr round 11 (radius: 10)
[40:01:44 -15279.043037] SLOW spr round 12 (radius: 15)
[40:03:42 -15274.328231] SLOW spr round 13 (radius: 5)
[40:05:08 -15273.186835] SLOW spr round 14 (radius: 5)
[40:06:19 -15273.186452] SLOW spr round 15 (radius: 10)
[40:07:21 -15273.186394] SLOW spr round 16 (radius: 15)
[40:09:27 -15269.661403] SLOW spr round 17 (radius: 5)
[40:10:50 -15269.206121] SLOW spr round 18 (radius: 5)
[40:12:01 -15269.205632] SLOW spr round 19 (radius: 10)
[40:13:04 -15269.205588] SLOW spr round 20 (radius: 15)
[40:15:09 -15267.319298] SLOW spr round 21 (radius: 5)
[40:16:33 -15267.023118] SLOW spr round 22 (radius: 5)
[40:17:46 -15266.157716] SLOW spr round 23 (radius: 5)
[40:18:55 -15266.059207] SLOW spr round 24 (radius: 10)
[40:20:01 -15265.391301] SLOW spr round 25 (radius: 5)
[40:21:27 -15265.391229] SLOW spr round 26 (radius: 10)
[40:22:38 -15265.391188] SLOW spr round 27 (radius: 15)
[40:24:31 -15265.391146] SLOW spr round 28 (radius: 20)
[40:27:31 -15262.750827] SLOW spr round 29 (radius: 5)
[40:28:55 -15262.750070] SLOW spr round 30 (radius: 10)
[40:30:09 -15262.750067] SLOW spr round 31 (radius: 15)
[40:32:04 -15262.750066] SLOW spr round 32 (radius: 20)
[40:35:07 -15262.250061] SLOW spr round 33 (radius: 5)
[40:36:34 -15262.204724] SLOW spr round 34 (radius: 10)
[40:37:48 -15262.204307] SLOW spr round 35 (radius: 15)
[40:39:45 -15261.162945] SLOW spr round 36 (radius: 5)
[40:41:09 -15261.162450] SLOW spr round 37 (radius: 10)
[40:42:22 -15260.999256] SLOW spr round 38 (radius: 5)
[40:43:42 -15260.998879] SLOW spr round 39 (radius: 10)
[40:44:51 -15260.998851] SLOW spr round 40 (radius: 15)
[40:46:53 -15260.998850] SLOW spr round 41 (radius: 20)
[40:50:03 -15259.671294] SLOW spr round 42 (radius: 5)
[40:51:29 -15259.500286] SLOW spr round 43 (radius: 5)
[40:52:40 -15259.500165] SLOW spr round 44 (radius: 10)
[40:53:44 -15259.380351] SLOW spr round 45 (radius: 5)
[40:55:03 -15259.379891] SLOW spr round 46 (radius: 10)
[40:56:12 -15259.379878] SLOW spr round 47 (radius: 15)
[40:58:09 -15259.379875] SLOW spr round 48 (radius: 20)
[41:01:09 -15258.863787] SLOW spr round 49 (radius: 5)
[41:02:35 -15258.801207] SLOW spr round 50 (radius: 10)
[41:03:48 -15258.800367] SLOW spr round 51 (radius: 15)
[41:05:45 -15258.800345] SLOW spr round 52 (radius: 20)
[41:08:49 -15258.546342] SLOW spr round 53 (radius: 5)
[41:10:14 -15258.544672] SLOW spr round 54 (radius: 10)
[41:11:28 -15258.544640] SLOW spr round 55 (radius: 15)
[41:13:25 -15258.544638] SLOW spr round 56 (radius: 20)
[41:16:35 -15258.493447] SLOW spr round 57 (radius: 25)
[41:20:24 -15248.655984] SLOW spr round 58 (radius: 5)
[41:21:54 -15231.086883] SLOW spr round 59 (radius: 5)
[41:23:06 -15231.086021] SLOW spr round 60 (radius: 10)
[41:24:11 -15229.816648] SLOW spr round 61 (radius: 5)
[41:25:32 -15227.917066] SLOW spr round 62 (radius: 5)
[41:26:42 -15227.907457] SLOW spr round 63 (radius: 10)
[41:27:46 -15227.907263] SLOW spr round 64 (radius: 15)
[41:29:58 -15227.328578] SLOW spr round 65 (radius: 5)
[41:31:23 -15227.323026] SLOW spr round 66 (radius: 10)
[41:32:35 -15227.322715] SLOW spr round 67 (radius: 15)
[41:34:37 -15227.322689] SLOW spr round 68 (radius: 20)
[41:37:46 -15227.285284] SLOW spr round 69 (radius: 25)
[41:41:40 -15225.965411] SLOW spr round 70 (radius: 5)
[41:43:08 -15225.965372] SLOW spr round 71 (radius: 10)
[41:44:29 -15225.965361] SLOW spr round 72 (radius: 15)
[41:46:35 -15225.965350] SLOW spr round 73 (radius: 20)
[41:49:46 -15225.965340] SLOW spr round 74 (radius: 25)
[41:53:35 -15225.916395] Model parameter optimization (eps = 0.100000)

[41:53:42] ML tree search #18, logLikelihood: -15225.550969

[41:53:42 -33400.539939] Initial branch length optimization
[41:53:43 -28457.970347] Model parameter optimization (eps = 10.000000)
[41:53:52 -28406.775299] AUTODETECT spr round 1 (radius: 5)
[41:54:31 -23627.338070] AUTODETECT spr round 2 (radius: 10)
[41:55:19 -19364.535698] AUTODETECT spr round 3 (radius: 15)
[41:56:14 -18056.929450] AUTODETECT spr round 4 (radius: 20)
[41:57:22 -17669.097131] AUTODETECT spr round 5 (radius: 25)
[41:58:43 -17235.653883] SPR radius for FAST iterations: 25 (autodetect)
[41:58:43 -17235.653883] Model parameter optimization (eps = 3.000000)
[41:58:52 -17225.309860] FAST spr round 1 (radius: 25)
[41:59:59 -15701.789343] FAST spr round 2 (radius: 25)
[42:00:54 -15413.273119] FAST spr round 3 (radius: 25)
[42:01:47 -15332.174465] FAST spr round 4 (radius: 25)
[42:02:35 -15328.943121] FAST spr round 5 (radius: 25)
[42:03:20 -15320.038950] FAST spr round 6 (radius: 25)
[42:04:03 -15320.038377] Model parameter optimization (eps = 1.000000)
[42:04:09 -15318.471411] SLOW spr round 1 (radius: 5)
[42:05:11 -15302.365763] SLOW spr round 2 (radius: 5)
[42:06:13 -15301.050916] SLOW spr round 3 (radius: 5)
[42:07:14 -15300.916585] SLOW spr round 4 (radius: 5)
[42:08:14 -15300.805004] SLOW spr round 5 (radius: 5)
[42:09:13 -15300.804970] SLOW spr round 6 (radius: 10)
[42:10:16 -15299.937892] SLOW spr round 7 (radius: 5)
[42:11:40 -15299.122345] SLOW spr round 8 (radius: 5)
[42:12:57 -15297.279490] SLOW spr round 9 (radius: 5)
[42:14:07 -15297.279435] SLOW spr round 10 (radius: 10)
[42:15:15 -15297.279402] SLOW spr round 11 (radius: 15)
[42:17:52 -15268.551495] SLOW spr round 12 (radius: 5)
[42:19:21 -15236.335553] SLOW spr round 13 (radius: 5)
[42:20:35 -15235.830606] SLOW spr round 14 (radius: 5)
[42:21:40 -15235.811295] SLOW spr round 15 (radius: 10)
[42:22:43 -15235.809971] SLOW spr round 16 (radius: 15)
[42:25:17 -15235.129131] SLOW spr round 17 (radius: 5)
[42:26:44 -15235.128801] SLOW spr round 18 (radius: 10)
[42:27:58 -15235.128766] SLOW spr round 19 (radius: 15)
[42:30:17 -15235.128734] SLOW spr round 20 (radius: 20)
[42:34:15 -15229.523468] SLOW spr round 21 (radius: 5)
[42:35:48 -15224.638649] SLOW spr round 22 (radius: 5)
[42:37:06 -15221.160852] SLOW spr round 23 (radius: 5)
[42:38:13 -15221.157428] SLOW spr round 24 (radius: 10)
[42:39:21 -15218.212978] SLOW spr round 25 (radius: 5)
[42:40:48 -15214.772303] SLOW spr round 26 (radius: 5)
[42:42:08 -15214.772111] SLOW spr round 27 (radius: 10)
[42:43:21 -15214.229057] SLOW spr round 28 (radius: 5)
[42:44:49 -15214.229017] SLOW spr round 29 (radius: 10)
[42:46:01 -15214.228998] SLOW spr round 30 (radius: 15)
[42:48:12 -15213.938165] SLOW spr round 31 (radius: 5)
[42:49:37 -15213.938149] SLOW spr round 32 (radius: 10)
[42:50:51 -15213.938133] SLOW spr round 33 (radius: 15)
[42:53:01 -15213.688398] SLOW spr round 34 (radius: 5)
[42:54:27 -15213.688386] SLOW spr round 35 (radius: 10)
[42:55:42 -15213.688384] SLOW spr round 36 (radius: 15)
[42:57:52 -15213.688381] SLOW spr round 37 (radius: 20)
[43:01:25 -15212.203862] SLOW spr round 38 (radius: 5)
[43:02:55 -15211.382733] SLOW spr round 39 (radius: 5)
[43:04:10 -15211.382710] SLOW spr round 40 (radius: 10)
[43:05:18 -15211.382707] SLOW spr round 41 (radius: 15)
[43:07:36 -15209.922703] SLOW spr round 42 (radius: 5)
[43:09:02 -15209.922479] SLOW spr round 43 (radius: 10)
[43:10:17 -15209.922472] SLOW spr round 44 (radius: 15)
[43:12:30 -15209.922470] SLOW spr round 45 (radius: 20)
[43:16:04 -15208.194136] SLOW spr round 46 (radius: 5)
[43:17:34 -15207.905780] SLOW spr round 47 (radius: 5)
[43:18:47 -15207.905525] SLOW spr round 48 (radius: 10)
[43:19:53 -15207.905520] SLOW spr round 49 (radius: 15)
[43:22:05 -15207.905517] SLOW spr round 50 (radius: 20)
[43:25:29 -15207.607336] SLOW spr round 51 (radius: 5)
[43:27:01 -15207.600307] SLOW spr round 52 (radius: 10)
[43:28:17 -15207.599585] SLOW spr round 53 (radius: 15)
[43:30:19 -15207.599512] SLOW spr round 54 (radius: 20)
[43:33:40 -15207.599503] SLOW spr round 55 (radius: 25)
[43:37:32 -15207.080493] SLOW spr round 56 (radius: 5)
[43:39:02 -15206.827207] SLOW spr round 57 (radius: 5)
[43:40:18 -15206.795776] SLOW spr round 58 (radius: 10)
[43:41:31 -15206.794928] SLOW spr round 59 (radius: 15)
[43:43:47 -15206.794592] SLOW spr round 60 (radius: 20)
[43:47:14 -15206.794427] SLOW spr round 61 (radius: 25)
[43:51:06 -15206.031989] SLOW spr round 62 (radius: 5)
[43:52:35 -15206.031962] SLOW spr round 63 (radius: 10)
[43:53:52 -15206.031954] SLOW spr round 64 (radius: 15)
[43:55:58 -15206.031949] SLOW spr round 65 (radius: 20)
[43:59:27 -15206.031945] SLOW spr round 66 (radius: 25)
[44:03:18 -15206.031942] Model parameter optimization (eps = 0.100000)

[44:03:25] ML tree search #19, logLikelihood: -15205.068692

[44:03:25 -33184.826284] Initial branch length optimization
[44:03:25 -28263.346994] Model parameter optimization (eps = 10.000000)
[44:03:37 -28175.863589] AUTODETECT spr round 1 (radius: 5)
[44:04:17 -23259.556008] AUTODETECT spr round 2 (radius: 10)
[44:05:12 -20037.448360] AUTODETECT spr round 3 (radius: 15)
[44:06:09 -18327.119382] AUTODETECT spr round 4 (radius: 20)
[44:07:21 -17091.030353] AUTODETECT spr round 5 (radius: 25)
[44:08:40 -16542.840113] SPR radius for FAST iterations: 25 (autodetect)
[44:08:40 -16542.840113] Model parameter optimization (eps = 3.000000)
[44:08:47 -16539.702099] FAST spr round 1 (radius: 25)
[44:09:57 -15505.935823] FAST spr round 2 (radius: 25)
[44:11:09 -15369.299587] FAST spr round 3 (radius: 25)
[44:12:09 -15311.389335] FAST spr round 4 (radius: 25)
[44:13:04 -15303.670981] FAST spr round 5 (radius: 25)
[44:13:53 -15303.318068] FAST spr round 6 (radius: 25)
[44:14:38 -15303.316909] Model parameter optimization (eps = 1.000000)
[44:14:44 -15300.767214] SLOW spr round 1 (radius: 5)
[44:15:46 -15294.236286] SLOW spr round 2 (radius: 5)
[44:16:48 -15293.651833] SLOW spr round 3 (radius: 5)
[44:17:46 -15293.651582] SLOW spr round 4 (radius: 10)
[44:18:50 -15289.216156] SLOW spr round 5 (radius: 5)
[44:20:11 -15289.214670] SLOW spr round 6 (radius: 10)
[44:21:21 -15289.214440] SLOW spr round 7 (radius: 15)
[44:23:36 -15284.528875] SLOW spr round 8 (radius: 5)
[44:25:03 -15283.960561] SLOW spr round 9 (radius: 5)
[44:26:16 -15283.960228] SLOW spr round 10 (radius: 10)
[44:27:21 -15283.342936] SLOW spr round 11 (radius: 5)
[44:28:41 -15283.342719] SLOW spr round 12 (radius: 10)
[44:29:51 -15283.342573] SLOW spr round 13 (radius: 15)
[44:32:03 -15278.331932] SLOW spr round 14 (radius: 5)
[44:33:28 -15276.312846] SLOW spr round 15 (radius: 5)
[44:34:39 -15276.312452] SLOW spr round 16 (radius: 10)
[44:35:44 -15272.730864] SLOW spr round 17 (radius: 5)
[44:37:06 -15272.259809] SLOW spr round 18 (radius: 5)
[44:38:17 -15271.784531] SLOW spr round 19 (radius: 5)
[44:39:23 -15271.296911] SLOW spr round 20 (radius: 5)
[44:40:27 -15271.296528] SLOW spr round 21 (radius: 10)
[44:41:34 -15271.296497] SLOW spr round 22 (radius: 15)
[44:43:55 -15269.718844] SLOW spr round 23 (radius: 5)
[44:45:22 -15269.625270] SLOW spr round 24 (radius: 10)
[44:46:35 -15269.624697] SLOW spr round 25 (radius: 15)
[44:48:42 -15265.447096] SLOW spr round 26 (radius: 5)
[44:50:11 -15238.398285] SLOW spr round 27 (radius: 5)
[44:51:27 -15234.596893] SLOW spr round 28 (radius: 5)
[44:52:36 -15234.594801] SLOW spr round 29 (radius: 10)
[44:53:41 -15234.593909] SLOW spr round 30 (radius: 15)
[44:55:58 -15233.652556] SLOW spr round 31 (radius: 5)
[44:57:24 -15233.205442] SLOW spr round 32 (radius: 5)
[44:58:37 -15233.005276] SLOW spr round 33 (radius: 5)
[44:59:42 -15233.005245] SLOW spr round 34 (radius: 10)
[45:00:45 -15233.005222] SLOW spr round 35 (radius: 15)
[45:02:57 -15232.270606] SLOW spr round 36 (radius: 5)
[45:04:21 -15232.270580] SLOW spr round 37 (radius: 10)
[45:05:35 -15232.270558] SLOW spr round 38 (radius: 15)
[45:07:36 -15231.696594] SLOW spr round 39 (radius: 5)
[45:09:05 -15231.695851] SLOW spr round 40 (radius: 10)
[45:10:24 -15231.695828] SLOW spr round 41 (radius: 15)
[45:12:28 -15231.657180] SLOW spr round 42 (radius: 20)
[45:15:48 -15227.020398] SLOW spr round 43 (radius: 5)
[45:17:15 -15222.424153] SLOW spr round 44 (radius: 5)
[45:18:30 -15220.960103] SLOW spr round 45 (radius: 5)
[45:19:35 -15220.959569] SLOW spr round 46 (radius: 10)
[45:20:38 -15220.959542] SLOW spr round 47 (radius: 15)
[45:22:56 -15218.208119] SLOW spr round 48 (radius: 5)
[45:24:20 -15218.134980] SLOW spr round 49 (radius: 10)
[45:25:33 -15218.134438] SLOW spr round 50 (radius: 15)
[45:27:36 -15218.088311] SLOW spr round 51 (radius: 20)
[45:31:04 -15214.823587] SLOW spr round 52 (radius: 5)
[45:32:31 -15211.608273] SLOW spr round 53 (radius: 5)
[45:33:41 -15211.607650] SLOW spr round 54 (radius: 10)
[45:34:46 -15211.607616] SLOW spr round 55 (radius: 15)
[45:36:52 -15211.607615] SLOW spr round 56 (radius: 20)
[45:40:30 -15195.079613] SLOW spr round 57 (radius: 5)
[45:41:56 -15195.077410] SLOW spr round 58 (radius: 10)
[45:43:07 -15195.077350] SLOW spr round 59 (radius: 15)
[45:45:03 -15195.077336] SLOW spr round 60 (radius: 20)
[45:48:25 -15193.886353] SLOW spr round 61 (radius: 5)
[45:49:46 -15193.864782] SLOW spr round 62 (radius: 10)
[45:50:58 -15193.864682] SLOW spr round 63 (radius: 15)
[45:52:54 -15193.864566] SLOW spr round 64 (radius: 20)
[45:56:13 -15193.440484] SLOW spr round 65 (radius: 5)
[45:57:34 -15193.430924] SLOW spr round 66 (radius: 10)
[45:58:47 -15193.415411] SLOW spr round 67 (radius: 15)
[46:00:44 -15193.414465] SLOW spr round 68 (radius: 20)
[46:04:01 -15193.413514] SLOW spr round 69 (radius: 25)
[46:08:00 -15190.397992] SLOW spr round 70 (radius: 5)
[46:09:29 -15190.271661] SLOW spr round 71 (radius: 5)
[46:10:42 -15190.271449] SLOW spr round 72 (radius: 10)
[46:11:45 -15190.271438] SLOW spr round 73 (radius: 15)
[46:13:46 -15189.999193] SLOW spr round 74 (radius: 5)
[46:15:06 -15189.900454] SLOW spr round 75 (radius: 10)
[46:16:16 -15189.900036] SLOW spr round 76 (radius: 15)
[46:18:12 -15189.900016] SLOW spr round 77 (radius: 20)
[46:21:30 -15189.900008] SLOW spr round 78 (radius: 25)
[46:25:20 -15189.841942] Model parameter optimization (eps = 0.100000)

[46:25:26] ML tree search #20, logLikelihood: -15188.826706


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.321437,0.115846) (0.142856,0.347214) (0.250002,0.979033) (0.285704,2.339485) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -15128.336173

AIC score: 33350.672347 / AICc score: 4822862.672347 / BIC score: 35411.592724
Free parameters (model + branch lengths): 1547

WARNING: Number of free parameters (K=1547) is larger than alignment size (n=28).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 190 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75800/3_mltree/O75800.raxml.log

Analysis started: 30-Jun-2021 17:36:20 / finished: 02-Jul-2021 16:01:47

Elapsed time: 167126.969 seconds

Consumed energy: 9274.861 Wh (= 46 km in an electric car, or 232 km with an e-scooter!)