RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 16:39:08 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/2_msa/O75593_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/3_mltree/O75593.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626097148 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/2_msa/O75593_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 365 sites WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and sp_P14734_FKH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and tr_B4IH17_B4IH17_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and tr_Q298B5_Q298B5_DROPS_46245 are exactly identical! WARNING: Sequences tr_A0A1D5NX62_A0A1D5NX62_CHICK_9031 and tr_A0A226MTE7_A0A226MTE7_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NX62_A0A1D5NX62_CHICK_9031 and tr_A0A226P490_A0A226P490_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A226MS89_A0A226MS89_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A226PFG2_A0A226PFG2_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q61080_FOXF1_MOUSE_10090 and tr_M0R8R8_M0R8R8_RAT_10116 are exactly identical! WARNING: Sequences tr_G3QG51_G3QG51_GORGO_9595 and tr_A0A2R9AUY3_A0A2R9AUY3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R1I1_G3R1I1_GORGO_9595 and tr_A0A096NKI7_A0A096NKI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A2I3TMI6_A0A2I3TMI6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and sp_Q9Y261_FOXA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_F7D2T8_F7D2T8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A096MMP8_A0A096MMP8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A0D9RF89_A0A0D9RF89_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A2K5M2A1_A0A2K5M2A1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A2K6ATQ4_A0A2K6ATQ4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A2K5YA79_A0A2K5YA79_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3S6N6_G3S6N6_GORGO_9595 and tr_H2PHB8_H2PHB8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3S6N6_G3S6N6_GORGO_9595 and tr_H2QRZ5_H2QRZ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S6N6_G3S6N6_GORGO_9595 and tr_A0A2R8ZMY1_A0A2R8ZMY1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NRP8_H2NRP8_PONAB_9601 and tr_A0A2K5LXJ0_A0A2K5LXJ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NRP8_H2NRP8_PONAB_9601 and tr_A0A2K6C7H7_A0A2K6C7H7_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2QBN8_H2QBN8_PANTR_9598 and tr_A0A096MYS8_A0A096MYS8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2R467_H2R467_PANTR_9598 and sp_O00358_FOXE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R7P3_H2R7P3_PANTR_9598 and sp_Q12947_FOXF2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R7P3_H2R7P3_PANTR_9598 and tr_A0A2K5KK85_A0A2K5KK85_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2R7P3_H2R7P3_PANTR_9598 and tr_A0A2K6AXU5_A0A2K6AXU5_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and sp_Q99958_FOXC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_F7D313_F7D313_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_A0A0D9SAX6_A0A0D9SAX6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_A0A2K6CY95_A0A2K6CY95_MACNE_9545 are exactly identical! WARNING: Sequences tr_M4AP91_M4AP91_XIPMA_8083 and tr_A0A087XBG4_A0A087XBG4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A9Q1_A0A088A9Q1_APIME_7460 and tr_A0A2A3EMC5_A0A2A3EMC5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195B0T4_A0A195B0T4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_F4WCG9_F4WCG9_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_A0A195ELU2_A0A195ELU2_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_A0A195B6K2_A0A195B6K2_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3N796_I3N796_ICTTR_43179 and tr_A0A286ZU79_A0A286ZU79_PIG_9823 are exactly identical! WARNING: Sequences tr_I3N796_I3N796_ICTTR_43179 and tr_M3WGT1_M3WGT1_FELCA_9685 are exactly identical! WARNING: Sequences tr_I3N796_I3N796_ICTTR_43179 and tr_A0A2U3YBS9_A0A2U3YBS9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_H0XK51_H0XK51_OTOGA_30611 and tr_F7HZ20_F7HZ20_CALJA_9483 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2I3NEP0_A0A2I3NEP0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K5NDQ3_A0A2K5NDQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K5Z9S7_A0A2K5Z9S7_MANLE_9568 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0VXB8_A0A0V0VXB8_9BILA_181606 are exactly identical! WARNING: Sequences tr_F4X777_F4X777_ACREC_103372 and tr_A0A195B0R2_A0A195B0R2_9HYME_520822 are exactly identical! WARNING: Sequences tr_F4X781_F4X781_ACREC_103372 and tr_A0A195DJ83_A0A195DJ83_9HYME_471704 are exactly identical! WARNING: Sequences tr_F4X781_F4X781_ACREC_103372 and tr_A0A195FHP9_A0A195FHP9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A2K6W851_A0A2K6W851_ONCVO_6282 and tr_A0A182EL16_A0A182EL16_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096P134_A0A096P134_PAPAN_9555 and tr_A0A2K5KUQ4_A0A2K5KUQ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P134_A0A096P134_PAPAN_9555 and tr_A0A2K6D1D5_A0A2K6D1D5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 and tr_A0A2K6AY68_A0A2K6AY68_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 and tr_A0A2K5YK08_A0A2K5YK08_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9RV20_A0A0D9RV20_CHLSB_60711 and tr_A0A2K5LFZ4_A0A2K5LFZ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151NRB6_A0A151NRB6_ALLMI_8496 and tr_A0A1U7S4B7_A0A1U7S4B7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EYS4_A0A091EYS4_CORBR_85066 and tr_A0A091FMZ2_A0A091FMZ2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091VHA2_A0A091VHA2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A087REH7_A0A087REH7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093H7J9_A0A093H7J9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091WEI1_A0A091WEI1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A099Z6V4_A0A099Z6V4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A0A0A5B6_A0A0A0A5B6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093GHH4_A0A093GHH4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091IYN4_A0A091IYN4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A194QS78_A0A194QS78_PAPMA_76193 and tr_A0A194PEW1_A0A194PEW1_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A194RKV3_A0A194RKV3_PAPMA_76193 and tr_A0A194QDB4_A0A194QDB4_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093QC01_A0A093QC01_9PASS_328815 and tr_A0A091FLN2_A0A091FLN2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093QC01_A0A093QC01_9PASS_328815 and tr_A0A093GSU3_A0A093GSU3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0A0A7D8_A0A0A0A7D8_CHAVO_50402 and tr_A0A091J4D8_A0A091J4D8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0MA01_A0A2I0MA01_COLLI_8932 and tr_A0A1V4KV23_A0A1V4KV23_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V0WH79_A0A0V0WH79_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V0VI92_A0A0V0VI92_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V1KVJ6_A0A0V1KVJ6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V0ZFB2_A0A0V0ZFB2_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V1NYY3_A0A0V1NYY3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V0TL33_A0A0V0TL33_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A151XJU3_A0A151XJU3_9HYME_64791 and tr_A0A195C3P5_A0A195C3P5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3N0J7_A0A1S3N0J7_SALSA_8030 and tr_A0A060Z8G9_A0A060Z8G9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MSD7_A0A226MSD7_CALSU_9009 and tr_A0A226PG57_A0A226PG57_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MVA8_A0A226MVA8_CALSU_9009 and tr_A0A226PGX1_A0A226PGX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NF86_A0A226NF86_CALSU_9009 and tr_A0A226PPX5_A0A226PPX5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3UZE9_A0A2U3UZE9_TURTR_9739 and tr_A0A2Y9PVK1_A0A2Y9PVK1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AQS4_A0A2U4AQS4_TURTR_9739 and tr_A0A2Y9PSS8_A0A2Y9PSS8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AQS4_A0A2U4AQS4_TURTR_9739 and tr_A0A2Y9SL73_A0A2Y9SL73_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CGC3_A0A2U4CGC3_TURTR_9739 and tr_A0A2Y9T064_A0A2Y9T064_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WI86_A0A2U3WI86_ODORO_9708 and tr_A0A2Y9KJU0_A0A2Y9KJU0_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 89 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.reduced.phy Alignment comprises 1 partitions and 365 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 365 Gaps: 46.38 % Invariant sites: 1.37 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/3_mltree/O75593.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 92 / 7360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -188027.103974 [00:00:00 -188027.103974] Initial branch length optimization [00:00:01 -104810.798789] Model parameter optimization (eps = 0.100000) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 18:05:22 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/2_msa/O75593_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/3_mltree/O75593.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102322 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.rba [00:00:00] Alignment comprises 1001 taxa, 1 partitions and 365 patterns Partition 0: noname Model: LG4X+R4 Alignment sites: 365 Gaps: 46.38 % Invariant sites: 1.37 % Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -104810.80, ML trees: 0, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 92 / 7360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -104810.798789 [00:00:00 -104810.798789] Model parameter optimization (eps = 0.100000) [00:00:25] Tree #1, final logLikelihood: -104724.283324 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.170677,0.080173) (0.107012,0.254635) (0.185250,0.680782) (0.537061,1.550946) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O75593/4_raxmlng_ancestral/O75593.raxml.log Analysis started: 12-Jul-2021 18:05:22 / finished: 12-Jul-2021 18:05:51 Elapsed time: 29.132 seconds (this run) / 30.544 seconds (total with restarts) Consumed energy: 2.097 Wh