RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 12:30:22 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/2_msa/O75489_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/2_msa/O75489_trimmed_msa.fasta [00:00:00] Loaded alignment with 898 taxa and 177 sites WARNING: Sequences tr_B4QP26_B4QP26_DROSI_7240 and tr_Q9VZU4_Q9VZU4_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QP26_B4QP26_DROSI_7240 and tr_B4HTK8_B4HTK8_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QP26_B4QP26_DROSI_7240 and tr_A0A1W4W036_A0A1W4W036_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A1D5PF35_A0A1D5PF35_CHICK_9031 and tr_G1NDT2_G1NDT2_MELGA_9103 are exactly identical! WARNING: Sequences tr_M3XXP9_M3XXP9_MUSPF_9669 and tr_A0A2Y9JWY8_A0A2Y9JWY8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B6GYL0_B6GYL0_PENRW_500485 and tr_A0A0A2K362_A0A0A2K362_PENEN_27334 are exactly identical! WARNING: Sequences tr_B6GYL0_B6GYL0_PENRW_500485 and tr_A0A0M8PEZ3_A0A0M8PEZ3_9EURO_229535 are exactly identical! WARNING: Sequences tr_B6GYL0_B6GYL0_PENRW_500485 and tr_A0A1V6QFF9_A0A1V6QFF9_9EURO_60172 are exactly identical! WARNING: Sequences tr_B6GYL0_B6GYL0_PENRW_500485 and tr_A0A1V6YLY7_A0A1V6YLY7_PENNA_60175 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and tr_G3REP5_G3REP5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and sp_Q0MQG7_NDUS3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and tr_H2NDI2_H2NDI2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and tr_H2Q3J2_H2Q3J2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and sp_Q0MQG8_NDUS3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and sp_O75489_NDUS3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HIR7_A0A2I3HIR7_NOMLE_61853 and tr_A0A2R9AFM3_A0A2R9AFM3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3GYL3_G3GYL3_CRIGR_10029 and tr_A0A1U7Q371_A0A1U7Q371_MESAU_10036 are exactly identical! WARNING: Sequences tr_J3KJ14_J3KJ14_COCIM_246410 and tr_E9CWJ1_E9CWJ1_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KJ14_J3KJ14_COCIM_246410 and tr_A0A0J6Y3U1_A0A0J6Y3U1_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QB05_B6QB05_TALMQ_441960 and tr_A0A093VBW4_A0A093VBW4_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2VWB3_B2VWB3_PYRTR_426418 and tr_A0A2W1EIS6_A0A2W1EIS6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_G2X5H0_G2X5H0_VERDV_498257 and tr_A0A0G4KHG7_A0A0G4KHG7_9PEZI_100787 are exactly identical! WARNING: Sequences tr_C0NRX0_C0NRX0_AJECG_447093 and tr_C6HD64_C6HD64_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0NRX0_C0NRX0_AJECG_447093 and tr_F0UTY5_F0UTY5_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NRX0_C0NRX0_AJECG_447093 and tr_A6R9X6_A6R9X6_AJECN_339724 are exactly identical! WARNING: Sequences sp_P23710_NDUS3_NEUCR_367110 and tr_G4UZ54_G4UZ54_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q29E23_Q29E23_DROPS_46245 and tr_B4H416_B4H416_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NP75_B8NP75_ASPFN_332952 and tr_Q2UN03_Q2UN03_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NP75_B8NP75_ASPFN_332952 and tr_A0A1S9D6F5_A0A1S9D6F5_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UCP0_A0A179UCP0_BLAGS_559298 and tr_C5GGX3_C5GGX3_AJEDR_559297 are exactly identical! WARNING: Sequences tr_F1P9Y3_F1P9Y3_CANLF_9615 and tr_A0A384CWH3_A0A384CWH3_URSMA_29073 are exactly identical! WARNING: Sequences tr_E9ENX7_E9ENX7_METRA_655844 and tr_E9E0I8_E9E0I8_METAQ_655827 are exactly identical! WARNING: Sequences tr_E9ENX7_E9ENX7_METRA_655844 and tr_A0A0B4IBI7_A0A0B4IBI7_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9ENX7_E9ENX7_METRA_655844 and tr_A0A0D9P6N3_A0A0D9P6N3_METAN_1291518 are exactly identical! WARNING: Sequences tr_E5R0N5_E5R0N5_ARTGP_535722 and tr_F2Q110_F2Q110_TRIEC_559882 are exactly identical! WARNING: Sequences tr_J4UQW0_J4UQW0_BEAB2_655819 and tr_A0A0A2VPP4_A0A0A2VPP4_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4UQW0_J4UQW0_BEAB2_655819 and tr_A0A2N6NXD4_A0A2N6NXD4_BEABA_176275 are exactly identical! WARNING: Sequences tr_K3Z2I1_K3Z2I1_SETIT_4555 and tr_A0A287EYJ0_A0A287EYJ0_HORVV_112509 are exactly identical! WARNING: Sequences tr_K3Z2I1_K3Z2I1_SETIT_4555 and tr_M0Z344_M0Z344_HORVV_112509 are exactly identical! WARNING: Sequences tr_K3Z2I1_K3Z2I1_SETIT_4555 and tr_Q35980_Q35980_WHEAT_4565 are exactly identical! WARNING: Sequences tr_K3Z2I1_K3Z2I1_SETIT_4555 and tr_A0A2T7C756_A0A2T7C756_9POAL_1504633 are exactly identical! WARNING: Sequences tr_C7Z5J5_C7Z5J5_NECH7_660122 and tr_A0A366RJ41_A0A366RJ41_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_G9P338_G9P338_HYPAI_452589 and tr_A0A0W7V992_A0A0W7V992_9HYPO_398673 are exactly identical! WARNING: Sequences tr_A1DMS9_A1DMS9_NEOFI_331117 and tr_A0A0S7DG01_A0A0S7DG01_9EURO_293939 are exactly identical! WARNING: Sequences tr_A1DMS9_A1DMS9_NEOFI_331117 and tr_A0A2I1CD02_A0A2I1CD02_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A2QWS1_A2QWS1_ASPNC_425011 and tr_G3YD64_G3YD64_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QWS1_A2QWS1_ASPNC_425011 and tr_A0A117E0D6_A0A117E0D6_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2QWS1_A2QWS1_ASPNC_425011 and tr_A0A1L9N1E6_A0A1L9N1E6_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2QWS1_A2QWS1_ASPNC_425011 and tr_A0A317W7E8_A0A317W7E8_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2QWS1_A2QWS1_ASPNC_425011 and tr_A0A319AWR8_A0A319AWR8_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F6ZLX4_F6ZLX4_MACMU_9544 and tr_G7PQ90_G7PQ90_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6ZLX4_F6ZLX4_MACMU_9544 and tr_A0A2K6BKE5_A0A2K6BKE5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7X9Y8_G7X9Y8_ASPKW_1033177 and tr_A0A146F8H9_A0A146F8H9_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7X9Y8_G7X9Y8_ASPKW_1033177 and tr_A0A1L9V1Z9_A0A1L9V1Z9_9EURO_767769 are exactly identical! WARNING: Sequences tr_G9MLK1_G9MLK1_HYPVG_413071 and tr_A0A2T4AGP7_A0A2T4AGP7_TRIHA_983964 are exactly identical! WARNING: Sequences tr_F9X9Q3_F9X9Q3_ZYMTI_336722 and tr_A0A0F4GF82_A0A0F4GF82_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9X9Q3_F9X9Q3_ZYMTI_336722 and tr_A0A1X7RRT1_A0A1X7RRT1_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G2YSG5_G2YSG5_BOTF4_999810 and tr_M7UCS0_M7UCS0_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_E3MVS8_E3MVS8_CAERE_31234 and tr_A0A261BG17_A0A261BG17_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8XGA9_A8XGA9_CAEBR_6238 and tr_A0A2G5VKZ2_A0A2G5VKZ2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F2SDW6_F2SDW6_TRIRC_559305 and tr_A0A178EV14_A0A178EV14_TRIRU_5551 are exactly identical! WARNING: Sequences tr_D4B0J6_D4B0J6_ARTBC_663331 and tr_A0A059J073_A0A059J073_9EURO_1215338 are exactly identical! WARNING: Sequences tr_B3RJ43_B3RJ43_TRIAD_10228 and tr_A0A369SL27_A0A369SL27_9METZ_287889 are exactly identical! WARNING: Sequences tr_A0A0D2XPW8_A0A0D2XPW8_FUSO4_426428 and tr_N4UI18_N4UI18_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_A0A0D2XPW8_A0A0D2XPW8_FUSO4_426428 and tr_X0CA93_X0CA93_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_A0A0D2XPW8_A0A0D2XPW8_FUSO4_426428 and tr_A0A2H3TA74_A0A2H3TA74_FUSOX_5507 are exactly identical! WARNING: Sequences tr_A0A0D2XPW8_A0A0D2XPW8_FUSO4_426428 and tr_A0A2H3HN89_A0A2H3HN89_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F1MS25_F1MS25_BOVIN_9913 and sp_P23709_NDUS3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_L0PBA4_L0PBA4_PNEJ8_1209962 and tr_A0A0W4ZU44_A0A0W4ZU44_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_L2G1V5_L2G1V5_COLFN_1213859 and tr_T0M3F9_T0M3F9_COLGC_1237896 are exactly identical! WARNING: Sequences tr_S0DQ69_S0DQ69_GIBF5_1279085 and tr_A0A365NDG4_A0A365NDG4_GIBIN_948311 are exactly identical! WARNING: Sequences tr_M2RND1_M2RND1_COCSN_665912 and tr_M2T7A3_M2T7A3_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2RND1_M2RND1_COCSN_665912 and tr_W6XUV6_W6XUV6_COCCA_930089 are exactly identical! WARNING: Sequences tr_V2XXH7_V2XXH7_MONRO_1381753 and tr_A0A0W0FXY5_A0A0W0FXY5_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W9X7H5_W9X7H5_9EURO_1182543 and tr_A0A0D2H9C2_A0A0D2H9C2_9EURO_1442371 are exactly identical! WARNING: Sequences tr_A0A010QPH7_A0A010QPH7_9PEZI_1445577 and tr_A0A1G4AYQ6_A0A1G4AYQ6_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A015MSX5_A0A015MSX5_9GLOM_1432141 and tr_A0A2I1EQR9_A0A2I1EQR9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015MSX5_A0A015MSX5_9GLOM_1432141 and tr_A0A2H5UG49_A0A2H5UG49_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2K6VJN9_A0A2K6VJN9_ONCVO_6282 and tr_A0A182EEQ1_A0A182EEQ1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A084QVD4_A0A084QVD4_STAC4_1283841 and tr_A0A084RF98_A0A084RF98_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A094GW67_A0A094GW67_9PEZI_1420912 and tr_A0A1B8E655_A0A1B8E655_9PEZI_1524831 are exactly identical! WARNING: Sequences tr_A0A094GW67_A0A094GW67_9PEZI_1420912 and tr_A0A1B8GVR9_A0A1B8GVR9_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094GW67_A0A094GW67_9PEZI_1420912 and tr_A0A1B8CQ55_A0A1B8CQ55_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A0F8WI53_A0A0F8WI53_9EURO_308745 and tr_A0A2T5M6A0_A0A2T5M6A0_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0M9F294_A0A0M9F294_FUSLA_179993 and tr_A0A0E0SAR4_A0A0E0SAR4_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0M9F294_A0A0M9F294_FUSLA_179993 and tr_A0A2T4GCS9_A0A2T4GCS9_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A0A1MMF8_A0A0A1MMF8_9FUNG_58291 and tr_A0A0A1PJJ0_A0A0A1PJJ0_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A0A1MMF8_A0A0A1MMF8_9FUNG_58291 and tr_A0A2G4SFG8_A0A2G4SFG8_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0F7VHS0_A0A0F7VHS0_9EURO_104259 and tr_A0A1Q5TD84_A0A1Q5TD84_9EURO_1316194 are exactly identical! WARNING: Sequences tr_A0A194QXW1_A0A194QXW1_PAPMA_76193 and tr_I4DQE8_I4DQE8_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093PZV9_A0A093PZV9_9PASS_328815 and tr_A0A087QYJ8_A0A087QYJ8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093PZV9_A0A093PZV9_9PASS_328815 and tr_A0A091W250_A0A091W250_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093PZV9_A0A093PZV9_9PASS_328815 and tr_A0A091GNZ9_A0A091GNZ9_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093PZV9_A0A093PZV9_9PASS_328815 and tr_A0A2I0MNY0_A0A2I0MNY0_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A093PZV9_A0A093PZV9_9PASS_328815 and tr_A0A1V4KG85_A0A1V4KG85_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1DB04_A0A0V1DB04_TRIBR_45882 and tr_A0A0V0WX39_A0A0V0WX39_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DB04_A0A0V1DB04_TRIBR_45882 and tr_A0A0V0VQ23_A0A0V0VQ23_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DB04_A0A0V1DB04_TRIBR_45882 and tr_A0A0V0TYX9_A0A0V0TYX9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A101MI36_A0A101MI36_9EURO_48697 and tr_A0A1V6NAX0_A0A1V6NAX0_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A164UIF6_A0A164UIF6_9HOMO_1314777 and tr_A0A166IPC6_A0A166IPC6_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A194VZA3_A0A194VZA3_9PEZI_105487 and tr_A0A194UVR4_A0A194UVR4_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A0M4JB57_A0A0M4JB57_TOBAC_4097 and tr_A0A075W230_A0A075W230_CAPAN_4072 are exactly identical! WARNING: Sequences tr_B5XG99_B5XG99_SALSA_8030 and tr_A0A060VXX8_A0A060VXX8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B8AH27_A0A1B8AH27_FUSPO_36050 and tr_A0A2L2TKD4_A0A2L2TKD4_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A1B7NIS1_A0A1B7NIS1_9HOMO_1314800 and tr_A0A1J8QZG9_A0A1J8QZG9_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1R1XMC1_A0A1R1XMC1_9FUNG_133412 and tr_A0A1R1YBV0_A0A1R1YBV0_9FUNG_133412 are exactly identical! WARNING: Sequences tr_A0A1J6KA62_A0A1J6KA62_NICAT_49451 and tr_A0A314KSQ5_A0A314KSQ5_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1R3RWI9_A0A1R3RWI9_ASPC5_602072 and tr_A0A317WBJ9_A0A317WBJ9_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1R3RWI9_A0A1R3RWI9_ASPC5_602072 and tr_A0A319E621_A0A319E621_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1V8U5J2_A0A1V8U5J2_9PEZI_1974281 and tr_A0A1V8SX90_A0A1V8SX90_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1Y2GYG0_A0A1Y2GYG0_9FUNG_765915 and tr_A0A1Y2H5A7_A0A1Y2H5A7_9FUNG_765915 are exactly identical! WARNING: Sequences tr_A0A1Z5T616_A0A1Z5T616_HORWE_1157616 and tr_A0A1Z5TDA7_A0A1Z5TDA7_HORWE_1157616 are exactly identical! WARNING: Sequences tr_A0A226MYK1_A0A226MYK1_CALSU_9009 and tr_A0A226PS25_A0A226PS25_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3II44_A0A2H3II44_9EURO_290292 and tr_A0A364KS68_A0A364KS68_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2H3EVD4_A0A2H3EVD4_9HELO_946125 and tr_A0A2H3F2T6_A0A2H3F2T6_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A2G8JTR9_A0A2G8JTR9_STIJA_307972 and tr_A0A2G8LCV0_A0A2G8LCV0_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A2K5LCC4_A0A2K5LCC4_CERAT_9531 and tr_A0A2K6A902_A0A2K6A902_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2N5SB35_A0A2N5SB35_9BASI_200324 and tr_A0A2N5VVH0_A0A2N5VVH0_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2S7Q4N9_A0A2S7Q4N9_9HELO_2070414 and tr_A0A2S7R354_A0A2S7R354_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2U3V0R4_A0A2U3V0R4_TURTR_9739 and tr_A0A2Y9PWI6_A0A2Y9PWI6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A319BY60_A0A319BY60_9EURO_1448315 and tr_A0A2V5IMH3_A0A2V5IMH3_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A319BY60_A0A319BY60_9EURO_1448315 and tr_A0A2V5HQ98_A0A2V5HQ98_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 122 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.reduced.phy Alignment comprises 1 partitions and 177 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 177 / 177 Gaps: 4.06 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 898 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 177 / 14160 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -171638.072162] Initial branch length optimization [00:00:04 -142699.799724] Model parameter optimization (eps = 10.000000) [00:00:51 -141478.745507] AUTODETECT spr round 1 (radius: 5) [00:03:03 -95736.156644] AUTODETECT spr round 2 (radius: 10) [00:05:21 -68209.217008] AUTODETECT spr round 3 (radius: 15) [00:07:54 -57259.153619] AUTODETECT spr round 4 (radius: 20) [00:10:45 -51492.286402] AUTODETECT spr round 5 (radius: 25) [00:13:54 -49812.536689] SPR radius for FAST iterations: 25 (autodetect) [00:13:54 -49812.536689] Model parameter optimization (eps = 3.000000) [00:14:20 -49758.566935] FAST spr round 1 (radius: 25) [00:16:51 -43822.608875] FAST spr round 2 (radius: 25) [00:18:46 -43375.518268] FAST spr round 3 (radius: 25) [00:20:32 -43296.635724] FAST spr round 4 (radius: 25) [00:22:05 -43293.856689] FAST spr round 5 (radius: 25) [00:23:36 -43292.990870] FAST spr round 6 (radius: 25) [00:25:04 -43292.990756] Model parameter optimization (eps = 1.000000) [00:25:31 -43286.032767] SLOW spr round 1 (radius: 5) [00:27:34 -43273.874946] SLOW spr round 2 (radius: 5) [00:29:35 -43273.099253] SLOW spr round 3 (radius: 5) [00:31:34 -43271.329753] SLOW spr round 4 (radius: 5) [00:33:28 -43271.329535] SLOW spr round 5 (radius: 10) [00:35:25 -43265.402269] SLOW spr round 6 (radius: 5) [00:37:57 -43264.653245] SLOW spr round 7 (radius: 5) [00:40:06 -43264.653183] SLOW spr round 8 (radius: 10) [00:42:04 -43264.653182] SLOW spr round 9 (radius: 15) [00:43:36] [worker #3] ML tree search #4, logLikelihood: -43309.018297 [00:44:59 -43263.677507] SLOW spr round 10 (radius: 5) [00:47:34 -43263.670057] SLOW spr round 11 (radius: 10) [00:49:46 -43263.669754] SLOW spr round 12 (radius: 15) [00:52:33 -43263.669715] SLOW spr round 13 (radius: 20) [00:56:51 -43263.669711] SLOW spr round 14 (radius: 25) [01:01:52 -43263.669710] Model parameter optimization (eps = 0.100000) [01:02:03] [worker #0] ML tree search #1, logLikelihood: -43263.537843 [01:02:03 -171711.311225] Initial branch length optimization [01:02:08 -142758.287232] Model parameter optimization (eps = 10.000000) [01:02:53 -141472.558321] AUTODETECT spr round 1 (radius: 5) [01:03:37] [worker #1] ML tree search #2, logLikelihood: -43295.473567 [01:05:05 -95977.608129] AUTODETECT spr round 2 (radius: 10) [01:07:23 -68001.258111] AUTODETECT spr round 3 (radius: 15) [01:09:58 -54927.760417] AUTODETECT spr round 4 (radius: 20) [01:13:06 -51430.829009] AUTODETECT spr round 5 (radius: 25) [01:16:37 -50205.006328] SPR radius for FAST iterations: 25 (autodetect) [01:16:37 -50205.006328] Model parameter optimization (eps = 3.000000) [01:16:59 -50175.162685] FAST spr round 1 (radius: 25) [01:19:31 -44049.633003] FAST spr round 2 (radius: 25) [01:21:31 -43763.263365] FAST spr round 3 (radius: 25) [01:23:23 -43433.678519] FAST spr round 4 (radius: 25) [01:24:14] [worker #2] ML tree search #3, logLikelihood: -43287.422966 [01:25:09 -43347.587103] FAST spr round 5 (radius: 25) [01:26:43 -43340.588769] FAST spr round 6 (radius: 25) [01:28:17 -43336.455110] FAST spr round 7 (radius: 25) [01:29:46 -43336.454933] Model parameter optimization (eps = 1.000000) [01:30:07 -43322.346210] SLOW spr round 1 (radius: 5) [01:32:14 -43296.727043] SLOW spr round 2 (radius: 5) [01:34:18 -43296.096869] SLOW spr round 3 (radius: 5) [01:36:19 -43296.096574] SLOW spr round 4 (radius: 10) [01:38:16 -43296.096542] SLOW spr round 5 (radius: 15) [01:41:21 -43291.488792] SLOW spr round 6 (radius: 5) [01:44:02 -43291.247586] SLOW spr round 7 (radius: 5) [01:46:19 -43291.247337] SLOW spr round 8 (radius: 10) [01:48:22 -43291.247336] SLOW spr round 9 (radius: 15) [01:51:20 -43290.099181] SLOW spr round 10 (radius: 5) [01:53:55 -43290.099140] SLOW spr round 11 (radius: 10) [01:56:11 -43289.916152] SLOW spr round 12 (radius: 5) [01:58:36 -43289.916151] SLOW spr round 13 (radius: 10) [02:00:42 -43289.916151] SLOW spr round 14 (radius: 15) [02:03:36 -43289.916151] SLOW spr round 15 (radius: 20) [02:06:29] [worker #3] ML tree search #8, logLikelihood: -43269.311164 [02:07:47 -43289.916151] SLOW spr round 16 (radius: 25) [02:08:38] [worker #1] ML tree search #6, logLikelihood: -43303.268782 [02:12:36 -43289.916151] Model parameter optimization (eps = 0.100000) [02:12:43] [worker #0] ML tree search #5, logLikelihood: -43289.819712 [02:12:43 -172176.854868] Initial branch length optimization [02:12:47 -143124.111833] Model parameter optimization (eps = 10.000000) [02:13:32 -141926.632136] AUTODETECT spr round 1 (radius: 5) [02:15:43 -98133.603072] AUTODETECT spr round 2 (radius: 10) [02:18:01 -70004.811735] AUTODETECT spr round 3 (radius: 15) [02:20:07] [worker #2] ML tree search #7, logLikelihood: -43266.063696 [02:20:37 -58648.064054] AUTODETECT spr round 4 (radius: 20) [02:23:41 -54176.873708] AUTODETECT spr round 5 (radius: 25) [02:26:46 -52352.435847] SPR radius for FAST iterations: 25 (autodetect) [02:26:46 -52352.435847] Model parameter optimization (eps = 3.000000) [02:27:16 -52214.775802] FAST spr round 1 (radius: 25) [02:29:43 -44323.414152] FAST spr round 2 (radius: 25) [02:31:43 -43722.857923] FAST spr round 3 (radius: 25) [02:33:28 -43410.121563] FAST spr round 4 (radius: 25) [02:35:10 -43358.931736] FAST spr round 5 (radius: 25) [02:36:40 -43356.728954] FAST spr round 6 (radius: 25) [02:38:08 -43356.728319] Model parameter optimization (eps = 1.000000) [02:38:25 -43350.256197] SLOW spr round 1 (radius: 5) [02:40:28 -43334.959398] SLOW spr round 2 (radius: 5) [02:42:29 -43332.457160] SLOW spr round 3 (radius: 5) [02:44:28 -43330.393498] SLOW spr round 4 (radius: 5) [02:46:24 -43330.393376] SLOW spr round 5 (radius: 10) [02:48:21 -43326.923963] SLOW spr round 6 (radius: 5) [02:50:48 -43326.923958] SLOW spr round 7 (radius: 10) [02:52:54 -43326.923958] SLOW spr round 8 (radius: 15) [02:55:39 -43326.923958] SLOW spr round 9 (radius: 20) [02:59:27 -43326.760371] SLOW spr round 10 (radius: 5) [03:02:04 -43326.760369] SLOW spr round 11 (radius: 10) [03:04:20 -43326.760369] SLOW spr round 12 (radius: 15) [03:07:02 -43326.760369] SLOW spr round 13 (radius: 20) [03:10:53 -43326.760369] SLOW spr round 14 (radius: 25) [03:15:22 -43326.760369] Model parameter optimization (eps = 0.100000) [03:15:27] [worker #0] ML tree search #9, logLikelihood: -43326.729348 [03:15:28 -172130.290814] Initial branch length optimization [03:15:31 -143102.675711] Model parameter optimization (eps = 10.000000) [03:16:14 -141877.544490] AUTODETECT spr round 1 (radius: 5) [03:18:27 -95320.049084] AUTODETECT spr round 2 (radius: 10) [03:19:45] [worker #1] ML tree search #10, logLikelihood: -43271.546271 [03:20:42 -71543.016024] AUTODETECT spr round 3 (radius: 15) [03:23:11 -57910.963120] AUTODETECT spr round 4 (radius: 20) [03:26:04 -54344.586595] AUTODETECT spr round 5 (radius: 25) [03:29:19 -51987.278389] SPR radius for FAST iterations: 25 (autodetect) [03:29:19 -51987.278389] Model parameter optimization (eps = 3.000000) [03:29:50 -51884.270108] FAST spr round 1 (radius: 25) [03:32:20 -44034.575178] FAST spr round 2 (radius: 25) [03:34:21 -43449.869447] FAST spr round 3 (radius: 25) [03:36:07 -43365.835717] FAST spr round 4 (radius: 25) [03:37:50 -43345.438823] FAST spr round 5 (radius: 25) [03:39:25 -43342.872950] FAST spr round 6 (radius: 25) [03:40:55 -43342.482300] FAST spr round 7 (radius: 25) [03:42:27 -43326.819430] FAST spr round 8 (radius: 25) [03:43:56 -43326.818118] Model parameter optimization (eps = 1.000000) [03:44:17 -43320.139394] SLOW spr round 1 (radius: 5) [03:46:19 -43307.047594] SLOW spr round 2 (radius: 5) [03:48:21 -43293.161349] SLOW spr round 3 (radius: 5) [03:50:00] [worker #2] ML tree search #11, logLikelihood: -43270.217437 [03:50:23 -43292.234258] SLOW spr round 4 (radius: 5) [03:52:20 -43292.231419] SLOW spr round 5 (radius: 10) [03:54:21 -43288.049985] SLOW spr round 6 (radius: 5) [03:56:51 -43287.130765] SLOW spr round 7 (radius: 5) [03:59:02 -43287.129139] SLOW spr round 8 (radius: 10) [04:01:02 -43285.588109] SLOW spr round 9 (radius: 5) [04:03:33 -43285.507972] SLOW spr round 10 (radius: 10) [04:04:29] [worker #3] ML tree search #12, logLikelihood: -43292.040842 [04:05:41 -43281.552741] SLOW spr round 11 (radius: 5) [04:08:09 -43281.488625] SLOW spr round 12 (radius: 10) [04:10:14 -43281.488012] SLOW spr round 13 (radius: 15) [04:13:05 -43281.487490] SLOW spr round 14 (radius: 20) [04:17:24 -43281.487001] SLOW spr round 15 (radius: 25) [04:22:31 -43281.486542] Model parameter optimization (eps = 0.100000) [04:22:48] [worker #0] ML tree search #13, logLikelihood: -43280.487370 [04:22:48 -171091.425360] Initial branch length optimization [04:22:52 -142650.775278] Model parameter optimization (eps = 10.000000) [04:23:56 -141476.912380] AUTODETECT spr round 1 (radius: 5) [04:26:07 -95179.268486] AUTODETECT spr round 2 (radius: 10) [04:28:25 -69718.174538] AUTODETECT spr round 3 (radius: 15) [04:30:49 -57419.660737] AUTODETECT spr round 4 (radius: 20) [04:33:52 -50731.771224] AUTODETECT spr round 5 (radius: 25) [04:37:10 -49735.567925] SPR radius for FAST iterations: 25 (autodetect) [04:37:10 -49735.567925] Model parameter optimization (eps = 3.000000) [04:37:39 -49683.072797] FAST spr round 1 (radius: 25) [04:40:10 -43862.579818] FAST spr round 2 (radius: 25) [04:42:10 -43367.328494] FAST spr round 3 (radius: 25) [04:43:57 -43313.710191] FAST spr round 4 (radius: 25) [04:45:34 -43295.588755] FAST spr round 5 (radius: 25) [04:46:50] [worker #1] ML tree search #14, logLikelihood: -43322.012113 [04:47:03 -43295.588290] Model parameter optimization (eps = 1.000000) [04:47:21 -43290.082607] SLOW spr round 1 (radius: 5) [04:49:27 -43275.534359] SLOW spr round 2 (radius: 5) [04:51:31 -43271.254526] SLOW spr round 3 (radius: 5) [04:53:33 -43270.406098] SLOW spr round 4 (radius: 5) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jul-2021 09:09:46 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/2_msa/O75489_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.rba [00:00:00] Alignment comprises 898 taxa, 1 partitions and 177 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 177 / 177 Gaps: 4.06 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -43270.41, ML trees: 14, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 177 / 14160 [00:00:00] Data distribution: max. searches per worker: 2 Starting ML tree search with 20 distinct starting trees [00:00:00 -43270.406098] SPR radius for FAST iterations: 25 (autodetect) [00:00:00 -43270.406098] SLOW spr round 4 (radius: 5) [00:01:55 -43270.404499] SLOW spr round 5 (radius: 10) [00:03:53 -43270.306117] SLOW spr round 6 (radius: 15) [00:06:58 -43270.304947] SLOW spr round 7 (radius: 20) [00:11:03 -43270.303951] SLOW spr round 8 (radius: 25) [00:11:23] [worker #3] ML tree search #16, logLikelihood: -43266.356344 [00:15:52 -43270.303106] Model parameter optimization (eps = 0.100000) [00:16:04] [worker #0] ML tree search #17, logLikelihood: -43270.023349 [00:16:04 -172166.653171] Initial branch length optimization [00:16:08 -143161.767283] Model parameter optimization (eps = 10.000000) [00:16:53 -141955.218253] AUTODETECT spr round 1 (radius: 5) [00:19:06 -96847.393780] AUTODETECT spr round 2 (radius: 10) [00:21:27 -67178.515991] AUTODETECT spr round 3 (radius: 15) [00:23:55 -57383.869735] AUTODETECT spr round 4 (radius: 20) [00:26:53 -52299.545683] AUTODETECT spr round 5 (radius: 25) [00:30:14 -51232.862367] SPR radius for FAST iterations: 25 (autodetect) [00:30:14 -51232.862367] Model parameter optimization (eps = 3.000000) [00:30:41 -51169.584265] FAST spr round 1 (radius: 25) [00:33:05 -43887.596775] FAST spr round 2 (radius: 25) [00:35:02 -43370.134632] FAST spr round 3 (radius: 25) [00:36:43 -43313.022464] FAST spr round 4 (radius: 25) [00:38:20 -43292.577508] FAST spr round 5 (radius: 25) [00:39:50 -43291.396538] FAST spr round 6 (radius: 25) [00:41:17 -43291.396530] Model parameter optimization (eps = 1.000000) [00:41:41 -43280.545281] SLOW spr round 1 (radius: 5) [00:43:42 -43265.392055] SLOW spr round 2 (radius: 5) [00:45:42 -43261.170181] SLOW spr round 3 (radius: 5) [00:47:42 -43260.001364] SLOW spr round 4 (radius: 5) [00:49:36 -43260.001037] SLOW spr round 5 (radius: 10) [00:51:31] [worker #1] ML tree search #18, logLikelihood: -43265.583729 [00:51:33 -43258.540241] SLOW spr round 6 (radius: 5) [00:54:02 -43258.540224] SLOW spr round 7 (radius: 10) [00:56:10 -43258.540224] SLOW spr round 8 (radius: 15) [00:59:03 -43256.614090] SLOW spr round 9 (radius: 5) [01:01:40 -43256.613760] SLOW spr round 10 (radius: 10) [01:03:54 -43256.613759] SLOW spr round 11 (radius: 15) [01:06:45 -43256.613759] SLOW spr round 12 (radius: 20) [01:11:00 -43256.613759] SLOW spr round 13 (radius: 25) [01:15:58 -43256.613759] Model parameter optimization (eps = 0.100000) [01:16:04] [worker #0] ML tree search #19, logLikelihood: -43256.573005 [01:57:18] [worker #2] ML tree search #15, logLikelihood: -43272.598864 [02:27:46] [worker #1] ML tree search #20, logLikelihood: -43286.667254 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.224184,0.616151) (0.446399,0.917537) (0.255747,1.048431) (0.073670,2.499624) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -43256.573005 AIC score: 90111.146011 / AICc score: 6566511.146011 / BIC score: 95825.039379 Free parameters (model + branch lengths): 1799 WARNING: Number of free parameters (K=1799) is larger than alignment size (n=177). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O75489/3_mltree/O75489.raxml.log Analysis started: 17-Jul-2021 09:09:46 / finished: 17-Jul-2021 11:37:33 Elapsed time: 8866.713 seconds (this run) / 26480.174 seconds (total with restarts)