RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:02:25 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/2_msa/O75469_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/3_mltree/O75469.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622804545 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/2_msa/O75469_nogap_msa.fasta [00:00:00] Loaded alignment with 991 taxa and 434 sites WARNING: Sequences tr_B4Q787_B4Q787_DROSI_7240 and sp_P49866_HNF4_DROME_7227 are exactly identical! WARNING: Sequences tr_B4Q787_B4Q787_DROSI_7240 and tr_B4HYQ4_B4HYQ4_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5PI18_A0A1D5PI18_CHICK_9031 and sp_O42392_VDR_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q8JHU1_Q8JHU1_CHICK_9031 and tr_G1NE58_G1NE58_MELGA_9103 are exactly identical! WARNING: Sequences sp_P49698_HNF4A_MOUSE_10090 and tr_G3I0S8_G3I0S8_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P49698_HNF4A_MOUSE_10090 and sp_P22449_HNF4A_RAT_10116 are exactly identical! WARNING: Sequences sp_P51448_RORA_MOUSE_10090 and tr_I3MJ32_I3MJ32_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P51448_RORA_MOUSE_10090 and sp_P35398_RORA_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P51448_RORA_MOUSE_10090 and tr_F1N7R0_F1N7R0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P51448_RORA_MOUSE_10090 and tr_A0A2U4CCG6_A0A2U4CCG6_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q8R1B8_RORB_MOUSE_10090 and tr_A0A286XYB5_A0A286XYB5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_F6Z1J2_F6Z1J2_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_U3D5Q9_U3D5Q9_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_G7NY91_G7NY91_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2I3LYC8_A0A2I3LYC8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A0D9RBL7_A0A0D9RBL7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2K5KI47_A0A2K5KI47_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GXG2_A0A2I3GXG2_NOMLE_61853 and tr_A0A2K5YIH9_A0A2K5YIH9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_F7F982_F7F982_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_F6XLC6_F6XLC6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_G7PYE4_G7PYE4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A0D9S4R5_A0A0D9S4R5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A2K5M1G3_A0A2K5M1G3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A2K6DK84_A0A2K6DK84_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R0V8_G1R0V8_NOMLE_61853 and tr_A0A2K5XT02_A0A2K5XT02_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1NXZ8_G1NXZ8_MYOLU_59463 and tr_F1LZZ3_F1LZZ3_RAT_10116 are exactly identical! WARNING: Sequences tr_G1NXZ8_G1NXZ8_MYOLU_59463 and tr_H0WW54_H0WW54_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1NXZ8_G1NXZ8_MYOLU_59463 and tr_A0A1S3EMU1_A0A1S3EMU1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1NXZ8_G1NXZ8_MYOLU_59463 and tr_A0A2Y9T725_A0A2Y9T725_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I2ZPR1_A0A2I2ZPR1_GORGO_9595 and tr_A0A2I3S658_A0A2I3S658_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZPR1_A0A2I2ZPR1_GORGO_9595 and tr_A0A2R9AUD5_A0A2R9AUD5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QS62_G3QS62_GORGO_9595 and tr_K7BSQ5_K7BSQ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QS62_G3QS62_GORGO_9595 and tr_A0A2R8ZW74_A0A2R8ZW74_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1T4B2_G1T4B2_RABIT_9986 and tr_F6X794_F6X794_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A0R3P1E8_A0A0R3P1E8_DROPS_46245 and tr_B4GJ59_B4GJ59_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2QXI5_E2QXI5_CANLF_9615 and tr_A0A2U3X0X1_A0A2U3X0X1_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2QXI5_E2QXI5_CANLF_9615 and tr_A0A2U3YN11_A0A2U3YN11_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R3D0_E2R3D0_CANLF_9615 and tr_F1S962_F1S962_PIG_9823 are exactly identical! WARNING: Sequences tr_F1P607_F1P607_CANLF_9615 and tr_G1LN19_G1LN19_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2J8JAS3_A0A2J8JAS3_PANTR_9598 and sp_A2T7D9_NR1I3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2J8JAS3_A0A2J8JAS3_PANTR_9598 and sp_Q14994_NR1I3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7BXK6_K7BXK6_PANTR_9598 and sp_P11473_VDR_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7BXK6_K7BXK6_PANTR_9598 and tr_A0A2R9BG75_A0A2R9BG75_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6QXD7_F6QXD7_MONDO_13616 and tr_A0A151MA31_A0A151MA31_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A088AMS7_A0A088AMS7_APIME_7460 and tr_A0A2A3EDK0_A0A2A3EDK0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NVI3_A0A158NVI3_ATTCE_12957 and tr_A0A195BPI2_A0A195BPI2_9HYME_520822 are exactly identical! WARNING: Sequences tr_H2TPM7_H2TPM7_TAKRU_31033 and tr_A0A2U9BZ43_A0A2U9BZ43_SCOMX_52904 are exactly identical! WARNING: Sequences sp_P10588_NR2F6_HUMAN_9606 and tr_M3VVT5_M3VVT5_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A158Q0C4_A0A158Q0C4_BRUMA_6279 and tr_A0A158Q0C5_A0A158Q0C5_BRUMA_6279 are exactly identical! WARNING: Sequences tr_F7FCC8_F7FCC8_MACMU_9544 and sp_Q8MIM3_NR1I3_MACMU_9544 are exactly identical! WARNING: Sequences tr_F7FCC8_F7FCC8_MACMU_9544 and tr_A0A2K6BPR6_A0A2K6BPR6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FEQ5_F7FEQ5_MACMU_9544 and tr_F7IE81_F7IE81_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7FEQ5_F7FEQ5_MACMU_9544 and tr_A0A2I3LCF1_A0A2I3LCF1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7FEQ5_F7FEQ5_MACMU_9544 and tr_A0A2K6DSS4_A0A2K6DSS4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FEQ5_F7FEQ5_MACMU_9544 and tr_A0A2K5ZNM4_A0A2K5ZNM4_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HFI3_F7HFI3_MACMU_9544 and tr_G7PHP7_G7PHP7_MACFA_9541 are exactly identical! WARNING: Sequences tr_H0YR96_H0YR96_TAEGU_59729 and tr_U3KE76_U3KE76_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_U3IDX3_U3IDX3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091E871_A0A091E871_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091JHS2_A0A091JHS2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A093Q6T0_A0A093Q6T0_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091WKM4_A0A091WKM4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A087QRV8_A0A087QRV8_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A093HQ19_A0A093HQ19_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091XXK0_A0A091XXK0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A093G2S4_A0A093G2S4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091IAB5_A0A091IAB5_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_U3JUY4_U3JUY4_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZJP2_H0ZJP2_TAEGU_59729 and tr_A0A218V9F4_A0A218V9F4_9PASE_299123 are exactly identical! WARNING: Sequences tr_E3M215_E3M215_CAERE_31234 and tr_A0A261CPG8_A0A261CPG8_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A3Q0KBB9_A0A3Q0KBB9_SCHMA_6183 and tr_Q2TUU3_Q2TUU3_SCHMA_6183 are exactly identical! WARNING: Sequences tr_B3RN76_B3RN76_TRIAD_10228 and tr_A0A369SD08_A0A369SD08_9METZ_287889 are exactly identical! WARNING: Sequences tr_F1MTT1_F1MTT1_BOVIN_9913 and sp_Q3SZL0_NR1H4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1N3S3_F1N3S3_BOVIN_9913 and tr_A0A2U3W8Q8_A0A2U3W8Q8_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1N3S3_F1N3S3_BOVIN_9913 and tr_A0A2Y9MA33_A0A2Y9MA33_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1N3S3_F1N3S3_BOVIN_9913 and tr_A0A2Y9TL48_A0A2Y9TL48_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G5E5J5_G5E5J5_BOVIN_9913 and sp_Q28037_VDR_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A096N4R7_A0A096N4R7_PAPAN_9555 and tr_A0A0D9R2M3_A0A0D9R2M3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A151NZY1_A0A151NZY1_ALLMI_8496 and tr_A0A1U7RM14_A0A1U7RM14_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091E612_A0A091E612_CORBR_85066 and tr_A0A0A0A148_A0A0A0A148_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J1X3_A0A091J1X3_EGRGA_188379 and tr_A0A091UYY8_A0A091UYY8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J1X3_A0A091J1X3_EGRGA_188379 and tr_A0A087RDR3_A0A087RDR3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091J1X3_A0A091J1X3_EGRGA_188379 and tr_A0A091WGZ1_A0A091WGZ1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VV96_A0A091VV96_NIPNI_128390 and tr_A0A087QYK9_A0A087QYK9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VV96_A0A091VV96_NIPNI_128390 and tr_A0A091GNL5_A0A091GNL5_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A087QJG7_A0A087QJG7_APTFO_9233 and tr_A0A0A0AB51_A0A0A0AB51_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087RJZ8_A0A087RJZ8_APTFO_9233 and tr_A0A0A0ATM1_A0A0A0ATM1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093I0V9_A0A093I0V9_STRCA_441894 and tr_A0A0A0A7U8_A0A0A0A7U8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0M0B7_A0A2I0M0B7_COLLI_8932 and tr_A0A1V4K1D6_A0A1V4K1D6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CPJ1_A0A0V1CPJ1_TRIBR_45882 and tr_A0A0V1P0V4_A0A0V1P0V4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DC20_A0A0V1DC20_TRIBR_45882 and tr_A0A0V0UM22_A0A0V0UM22_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DC20_A0A0V1DC20_TRIBR_45882 and tr_A0A0V0TLL1_A0A0V0TLL1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WPT1_A0A0V0WPT1_9BILA_92179 and tr_A0A0V1KN98_A0A0V1KN98_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0UUW9_A0A0V0UUW9_9BILA_181606 and tr_A0A0V0TPM3_A0A0V0TPM3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1I7U118_A0A1I7U118_9PELO_1561998 and tr_A0A1I7U119_A0A1I7U119_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A226MEB0_A0A226MEB0_CALSU_9009 and tr_A0A226PRB5_A0A226PRB5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QV01_A0A2D0QV01_ICTPU_7998 and tr_A0A2D0QWX5_A0A2D0QWX5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QV01_A0A2D0QV01_ICTPU_7998 and tr_A0A2D0QXL7_A0A2D0QXL7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5L8Q1_A0A2K5L8Q1_CERAT_9531 and tr_A0A2K5ZRR8_A0A2K5ZRR8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3WEC0_A0A2U3WEC0_ODORO_9708 and tr_A0A2U3XLM9_A0A2U3XLM9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WEC0_A0A2U3WEC0_ODORO_9708 and tr_A0A2Y9KEG6_A0A2Y9KEG6_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 101 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469.raxml.reduced.phy Alignment comprises 1 partitions and 434 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 434 Gaps: 27.59 % Invariant sites: 0.69 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/3_mltree/O75469.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 109 / 8720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -232274.509259 [00:00:00 -232274.509259] Initial branch length optimization [00:00:01 -158794.201089] Model parameter optimization (eps = 0.100000) [00:00:49] Tree #1, final logLikelihood: -158612.194277 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.122734,0.218116) (0.154831,0.397331) (0.361150,0.793307) (0.361285,1.730511) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O75469/4_raxmlng_ancestral/O75469.raxml.log Analysis started: 04-Jun-2021 14:02:25 / finished: 04-Jun-2021 14:03:18 Elapsed time: 53.110 seconds