RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:33:39 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/2_msa/O60880_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/3_mltree/O60880.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676819 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/2_msa/O60880_nogap_msa.fasta [00:00:00] Loaded alignment with 741 taxa and 128 sites WARNING: Sequences tr_A0A2R8QBA3_A0A2R8QBA3_DANRE_7955 and tr_A0A2R8QNV0_A0A2R8QNV0_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A2R8QBA3_A0A2R8QBA3_DANRE_7955 and tr_E7F1C2_E7F1C2_DANRE_7955 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and sp_P00520_ABL1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_G1PC86_G1PC86_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_H9GNS0_H9GNS0_ANOCA_28377 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_F6QCG8_F6QCG8_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_H0WWK4_H0WWK4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and sp_P00519_ABL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_G5AT60_G5AT60_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_K7FHZ2_K7FHZ2_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_G3WV25_G3WV25_SARHA_9305 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_U3JFF5_U3JFF5_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_U3IYV8_U3IYV8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A0D9RQJ3_A0A0D9RQJ3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A0Q3XA67_A0A0Q3XA67_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A2D0QAN0_A0A2D0QAN0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A2U4A468_A0A2U4A468_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A2U9CFM4_A0A2U9CFM4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A384CRH9_A0A384CRH9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q4JIM5_ABL2_MOUSE_10090 and tr_F1M0N1_F1M0N1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q4JIM5_ABL2_MOUSE_10090 and tr_A0A1U8C216_A0A1U8C216_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_G3ICV1_G3ICV1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_H2NEK2_H2NEK2_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_H2Q4C6_H2Q4C6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and sp_Q9WVR3_SHIP2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_I3MGA5_I3MGA5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_A0A286XKL5_A0A286XKL5_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and sp_O15357_SHIP2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_U3F258_U3F258_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_A0A096MSZ8_A0A096MSZ8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_A0A0D9QVX3_A0A0D9QVX3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_A0A1U7Q9S4_A0A1U7Q9S4_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q6P549_SHIP2_MOUSE_10090 and tr_A0A2K5N1I5_A0A2K5N1I5_CERAT_9531 are exactly identical! WARNING: Sequences tr_W5J694_W5J694_ANODA_43151 and tr_A7UTI5_A7UTI5_ANOGA_7165 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_G1S0A6_G1S0A6_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_G3QJK0_G3QJK0_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_H2N4J6_H2N4J6_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2I3TWE6_A0A2I3TWE6_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_F7FED8_F7FED8_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_H0VN71_H0VN71_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and sp_P42684_ABL2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_F7AU70_F7AU70_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_G3SW23_G3SW23_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2R8MYN3_A0A2R8MYN3_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_I3LP68_I3LP68_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_F1MWH8_F1MWH8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2I3MIM0_A0A2I3MIM0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A1S3AJS8_A0A1S3AJS8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A1U7TZR0_A0A1U7TZR0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2K5MCB1_A0A2K5MCB1_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2K6CR83_A0A2K6CR83_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2U3VSL4_A0A2U3VSL4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2Y9DE47_A0A2Y9DE47_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2Y9JSJ0_A0A2Y9JSJ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2Y9LZ58_A0A2Y9LZ58_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2Y9TJX0_A0A2Y9TJX0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y1Q0_M3Y1Q0_MUSPF_9669 and tr_F6X472_F6X472_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y1Q0_M3Y1Q0_MUSPF_9669 and tr_G1MD84_G1MD84_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y1Q0_M3Y1Q0_MUSPF_9669 and tr_F6QCI5_F6QCI5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y1Q0_M3Y1Q0_MUSPF_9669 and tr_A0A1U7U3I8_A0A1U7U3I8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y1Q0_M3Y1Q0_MUSPF_9669 and tr_A0A2Y9K800_A0A2Y9K800_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_F1PNY0_F1PNY0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_G3SMM4_G3SMM4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_F1SUW7_F1SUW7_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_L5K5Z0_L5K5Z0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_M3XCJ5_M3XCJ5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_A0A2Y9KU54_A0A2Y9KU54_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_A0A2Y9MR36_A0A2Y9MR36_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YFL7_M3YFL7_MUSPF_9669 and tr_A0A2Y9FY25_A0A2Y9FY25_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YMM7_M3YMM7_MUSPF_9669 and tr_A0A2Y9J9D9_A0A2Y9J9D9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_B4J010_B4J010_DROGR_7222 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_B4HJR1_B4HJR1_DROSE_7238 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_Q29D50_Q29D50_DROPS_46245 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_B3M4F6_B3M4F6_DROAN_7217 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_B4LCY8_B4LCY8_DROVI_7244 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_A0A0Q9XGJ2_A0A0Q9XGJ2_DROMO_7230 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_A0A1W4UV97_A0A1W4UV97_DROFC_30025 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_M3ZLX3_M3ZLX3_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_I3J0T1_I3J0T1_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_H2SQR3_H2SQR3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_H3DDH2_H3DDH2_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_A0A096MFK1_A0A096MFK1_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_A0A2I4ALD9_A0A2I4ALD9_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_A0A2U9C7V6_A0A2U9C7V6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_G3SKS3_G3SKS3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_H2PWP7_H2PWP7_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_H2R4K1_H2R4K1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and sp_O60880_SH21A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and sp_Q71S10_SH21A_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_F7INK7_F7INK7_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_G8F322_G8F322_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_A0A096NCY9_A0A096NCY9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_A0A0D9S0F2_A0A0D9S0F2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_A0A2K5KRT7_A0A2K5KRT7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_A0A2K6CKW8_A0A2K6CKW8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HCE7_A0A2I3HCE7_NOMLE_61853 and tr_A0A2R9BY26_A0A2R9BY26_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_G1MUH1_G1MUH1_MELGA_9103 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_F1PPK2_F1PPK2_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_F7B6Q9_F7B6Q9_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_W5Q539_W5Q539_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_I3N8T1_I3N8T1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_K7FX86_K7FX86_PELSI_13735 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_G3WWW2_G3WWW2_SARHA_9305 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_H1A456_H1A456_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_D2H3L6_D2H3L6_AILME_9646 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_G7NU10_G7NU10_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_L5KXU8_L5KXU8_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_U3K0H4_U3K0H4_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_U3J0U7_U3J0U7_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A091DK86_A0A091DK86_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A0D9RI41_A0A0D9RI41_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A0Q3U0Z2_A0A0Q3U0Z2_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A091EWN1_A0A091EWN1_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A091IJE8_A0A091IJE8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A093PWB2_A0A093PWB2_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A091UYW5_A0A091UYW5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A087QVI0_A0A087QVI0_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A093HBT4_A0A093HBT4_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A091FZH2_A0A091FZH2_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2I0MBR5_A0A2I0MBR5_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A093GDZ7_A0A093GDZ7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A091I2G2_A0A091I2G2_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A1V4JYW4_A0A1V4JYW4_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A218V4Y8_A0A218V4Y8_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2R9CMZ1_A0A2R9CMZ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2U4CQS2_A0A2U4CQS2_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2U3XRU8_A0A2U3XRU8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A384AMB6_A0A384AMB6_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_F1PEX6_F1PEX6_CANLF_9615 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2I3RAJ1_A0A2I3RAJ1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2I3S7G9_A0A2I3S7G9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_E9PT20_E9PT20_RAT_10116 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_I3NH11_I3NH11_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_H0V6K4_H0V6K4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_H9YUX8_H9YUX8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_G3PX44_G3PX44_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_G3SZ92_G3SZ92_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_H0Z2V6_H0Z2V6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_U3CVZ7_U3CVZ7_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A287BB27_A0A287BB27_PIG_9823 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_D2H177_D2H177_AILME_9646 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_G7PRB8_G7PRB8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_M3W3H7_M3W3H7_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A3B1JBR6_A0A3B1JBR6_ASTMX_7994 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A151MFN4_A0A151MFN4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A091FAS5_A0A091FAS5_CORBR_85066 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A093PK85_A0A093PK85_9PASS_328815 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A091URD2_A0A091URD2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A087RGY7_A0A087RGY7_APTFO_9233 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A093HB20_A0A093HB20_STRCA_441894 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A091V7N8_A0A091V7N8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A091GMR3_A0A091GMR3_9AVES_55661 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A093GBE1_A0A093GBE1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A091IH79_A0A091IH79_CALAN_9244 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1S3A6Y3_A0A1S3A6Y3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1S3FJV8_A0A1S3FJV8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1S3L0Z6_A0A1S3L0Z6_SALSA_8030 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1S3LJM4_A0A1S3LJM4_SALSA_8030 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1U7TEK2_A0A1U7TEK2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1U7S4W8_A0A1U7S4W8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A1U7R1K5_A0A1U7R1K5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A218V5K2_A0A218V5K2_9PASE_299123 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2D0QAM3_A0A2D0QAM3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K5LX70_A0A2K5LX70_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K6B7I9_A0A2K6B7I9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K5XNT4_A0A2K5XNT4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2R9BA11_A0A2R9BA11_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2U3VD43_A0A2U3VD43_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2Y9DJL9_A0A2Y9DJL9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2Y9NX24_A0A2Y9NX24_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2Y9F6C6_A0A2Y9F6C6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1N1M4_G1N1M4_MELGA_9103 and tr_W5PBZ8_W5PBZ8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1N1M4_G1N1M4_MELGA_9103 and tr_A0A2I3MEN2_A0A2I3MEN2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1N1M4_G1N1M4_MELGA_9103 and tr_A0A0A0AL44_A0A0A0AL44_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H9GIP7_H9GIP7_ANOCA_28377 and tr_A0A151MIR6_A0A151MIR6_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H9GIP7_H9GIP7_ANOCA_28377 and tr_A0A1U7SM91_A0A1U7SM91_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1U0I1_G1U0I1_RABIT_9986 and tr_W5K448_W5K448_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H2QJM6_H2QJM6_PANTR_9598 and tr_A0A2R9AEZ4_A0A2R9AEZ4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A3B5PV91_A0A3B5PV91_XIPMA_8083 and tr_A0A087YPJ4_A0A087YPJ4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AT87_A0A088AT87_APIME_7460 and tr_A0A2A3EUP4_A0A2A3EUP4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_F4WRI0_F4WRI0_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A151ISY3_A0A151ISY3_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A195BNP3_A0A195BNP3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A195F8C8_A0A195F8C8_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_F4WV60_F4WV60_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A026W235_A0A026W235_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A0M9AB24_A0A0M9AB24_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A0L7R834_A0A0L7R834_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A151WUC9_A0A151WUC9_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195DS06_A0A195DS06_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195BS54_A0A195BS54_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195EXC2_A0A195EXC2_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195C704_A0A195C704_9HYME_456900 are exactly identical! WARNING: Sequences tr_F6SKT4_F6SKT4_MACMU_9544 and tr_A0A2K5ZKY7_A0A2K5ZKY7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6WS52_F6WS52_MACMU_9544 and tr_G7NXC6_G7NXC6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6ZHV5_F6ZHV5_MACMU_9544 and tr_A0A2K6B8X3_A0A2K6B8X3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G5C7J7_G5C7J7_HETGA_10181 and tr_A0A384CJV3_A0A384CJV3_URSMA_29073 are exactly identical! WARNING: Sequences tr_F7BKF3_F7BKF3_XENTR_8364 and tr_A0A1L8GGA5_A0A1L8GGA5_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7BKF3_F7BKF3_XENTR_8364 and tr_A0A1L8GML3_A0A1L8GML3_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3M3J7_E3M3J7_CAERE_31234 and tr_A0A261AW03_A0A261AW03_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8WXQ5_A8WXQ5_CAEBR_6238 and tr_A0A2G5SPS2_A0A2G5SPS2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A096NNZ1_A0A096NNZ1_PAPAN_9555 and tr_A0A0D9R219_A0A0D9R219_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NNZ1_A0A096NNZ1_PAPAN_9555 and tr_A0A2K5KTZ2_A0A2K5KTZ2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0K0FYI6_A0A0K0FYI6_STRVS_75913 and tr_A0A0N5BF31_A0A0N5BF31_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0E9P6_A0A0K0E9P6_STRER_6248 and tr_A0A090L686_A0A090L686_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A151MDB4_A0A151MDB4_ALLMI_8496 and tr_A0A1U7SAD9_A0A1U7SAD9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NN35_A0A151NN35_ALLMI_8496 and tr_A0A1U7RRF1_A0A1U7RRF1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NNN8_A0A151NNN8_ALLMI_8496 and tr_A0A3Q0GBW7_A0A3Q0GBW7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NUQ5_A0A151NUQ5_ALLMI_8496 and tr_A0A1U8DJ35_A0A1U8DJ35_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A087RBV3_A0A087RBV3_APTFO_9233 and tr_A0A0A0ALS2_A0A0A0ALS2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V1CHZ0_A0A0V1CHZ0_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0WVC0_A0A0V0WVC0_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0VPU7_A0A0V0VPU7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V1KW03_A0A0V1KW03_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0ZF00_A0A0V0ZF00_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V1NZC5_A0A0V1NZC5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0TSD2_A0A0V0TSD2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0XMU8_A0A0V0XMU8_TRIPS_6337 and tr_A0A0V1I0Q3_A0A0V1I0Q3_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A182EAV5_A0A182EAV5_ONCOC_42157 and tr_A0A1I7VP16_A0A1I7VP16_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A1S3NU48_A0A1S3NU48_SALSA_8030 and tr_A0A1S3T2B3_A0A1S3T2B3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PBM6_A0A1S3PBM6_SALSA_8030 and tr_A0A1S3T6C1_A0A1S3T6C1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PBM6_A0A1S3PBM6_SALSA_8030 and tr_A0A060WJW7_A0A060WJW7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A0C5A9Q6_A0A0C5A9Q6_ICTPU_7998 and tr_A0A2D0SUE8_A0A2D0SUE8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PRP0_A0A2D0PRP0_ICTPU_7998 and tr_E3TG68_E3TG68_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q1X6_A0A2D0Q1X6_ICTPU_7998 and tr_A0A2D0Q3N4_A0A2D0Q3N4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RIA4_A0A2D0RIA4_ICTPU_7998 and tr_W5UI70_W5UI70_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RZ33_A0A2D0RZ33_ICTPU_7998 and tr_A0A2D0RZ35_A0A2D0RZ35_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RZ33_A0A2D0RZ33_ICTPU_7998 and tr_A0A2D0RZ37_A0A2D0RZ37_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5LF91_A0A2K5LF91_CERAT_9531 and tr_A0A2K5ZDT5_A0A2K5ZDT5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V3Q1_A0A2U3V3Q1_TURTR_9739 and tr_A0A2Y9M605_A0A2Y9M605_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 231 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880.raxml.reduced.phy Alignment comprises 1 partitions and 128 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 128 Gaps: 12.27 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/3_mltree/O60880.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 32 / 2560 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -29868.409300 [00:00:00 -29868.409300] Initial branch length optimization [00:00:00 -28419.849737] Model parameter optimization (eps = 0.100000) [00:00:31] Tree #1, final logLikelihood: -28343.583885 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.171482,0.301880) (0.147236,0.364580) (0.371002,0.867980) (0.310280,1.845208) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60880/4_raxmlng_ancestral/O60880.raxml.log Analysis started: 03-Jun-2021 02:33:39 / finished: 03-Jun-2021 02:34:12 Elapsed time: 32.437 seconds Consumed energy: 1.729 Wh