RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 03-Jul-2021 00:03:47 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/2_msa/O60503_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503 --seed 2 --threads 8 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (8 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/2_msa/O60503_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 630 sites

WARNING: Sequences tr_B4QMU3_B4QMU3_DROSI_7240 and tr_A8JNU1_A8JNU1_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4R4V7_B4R4V7_DROSI_7240 and sp_P32870_CYA1_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4R4V7_B4R4V7_DROSI_7240 and tr_B4IJ59_B4IJ59_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_U3KFY5_U3KFY5_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A091EXR1_A0A091EXR1_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A091JAM4_A0A091JAM4_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A087QTY1_A0A087QTY1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A0A0ANL0_A0A0A0ANL0_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A093G9I6_A0A093G9I6_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A091I4A3_A0A091I4A3_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5P0J0_A0A1D5P0J0_CHICK_9031 and tr_A0A218VB68_A0A218VB68_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PNE8_A0A1D5PNE8_CHICK_9031 and tr_U3JIS7_U3JIS7_FICAL_59894 are exactly identical!
WARNING: Sequences tr_M3XQN4_M3XQN4_MUSPF_9669 and tr_E1BQ12_E1BQ12_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3XQN4_M3XQN4_MUSPF_9669 and tr_A0A2U3WLQ4_A0A2U3WLQ4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XZG9_M3XZG9_MUSPF_9669 and tr_A0A2Y9KNI4_A0A2Y9KNI4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G3GSP7_G3GSP7_CRIGR_10029 and tr_A0A1U7QDF5_A0A1U7QDF5_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_H2PR79_H2PR79_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_A0A1D5Q874_A0A1D5Q874_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_U3DLD7_U3DLD7_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_G7PCU6_G7PCU6_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_A0A096N068_A0A096N068_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_A0A0D9RCI2_A0A0D9RCI2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_A0A2K5M765_A0A2K5M765_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_A0A2K6DDC0_A0A2K6DDC0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I2ZTJ4_A0A2I2ZTJ4_GORGO_9595 and tr_A0A2K5XPW5_A0A2K5XPW5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3QIR6_G3QIR6_GORGO_9595 and sp_O43306_ADCY6_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QPV5_G3QPV5_GORGO_9595 and sp_Q8NFM4_ADCY4_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3R473_G3R473_GORGO_9595 and tr_H2QUJ4_H2QUJ4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3R473_G3R473_GORGO_9595 and sp_Q08828_ADCY1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3R473_G3R473_GORGO_9595 and tr_A0A2R9BUC2_A0A2R9BUC2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3R6G7_G3R6G7_GORGO_9595 and tr_A0A2I3T3G3_A0A2I3T3G3_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3R6G7_G3R6G7_GORGO_9595 and sp_Q08462_ADCY2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3S0S7_G3S0S7_GORGO_9595 and tr_H2QN88_H2QN88_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3S0S7_G3S0S7_GORGO_9595 and sp_O95622_ADCY5_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3S0S7_G3S0S7_GORGO_9595 and tr_A0A2R9B8M9_A0A2R9B8M9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A0R3P4Z2_A0A0R3P4Z2_DROPS_46245 and tr_B4GY38_B4GY38_DROPE_7234 are exactly identical!
WARNING: Sequences tr_Q29P06_Q29P06_DROPS_46245 and tr_B4GJV7_B4GJV7_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A2I3SK46_A0A2I3SK46_PANTR_9598 and tr_A0A2R9BI25_A0A2R9BI25_PANPA_9597 are exactly identical!
WARNING: Sequences tr_K7CYN2_K7CYN2_PANTR_9598 and tr_A0A2R8ZJ01_A0A2R8ZJ01_PANPA_9597 are exactly identical!
WARNING: Sequences tr_K7DS66_K7DS66_PANTR_9598 and tr_A0A2R9AJ05_A0A2R9AJ05_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A158NMG5_A0A158NMG5_ATTCE_12957 and tr_A0A195B028_A0A195B028_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A1D5RFY5_A0A1D5RFY5_MACMU_9544 and tr_A0A2I3N0Z1_A0A2I3N0Z1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5RFY5_A0A1D5RFY5_MACMU_9544 and tr_A0A0D9R5F8_A0A0D9R5F8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5RFY5_A0A1D5RFY5_MACMU_9544 and tr_A0A2K5MN50_A0A2K5MN50_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5RFY5_A0A1D5RFY5_MACMU_9544 and tr_A0A2K5ZB86_A0A2K5ZB86_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1D5RHE7_A0A1D5RHE7_MACMU_9544 and tr_A0A096MMZ6_A0A096MMZ6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5RHE7_A0A1D5RHE7_MACMU_9544 and tr_A0A0D9RXN1_A0A0D9RXN1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5RHE7_A0A1D5RHE7_MACMU_9544 and tr_A0A2K5M597_A0A2K5M597_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5RHE7_A0A1D5RHE7_MACMU_9544 and tr_A0A2K6EAG5_A0A2K6EAG5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5RHE7_A0A1D5RHE7_MACMU_9544 and tr_A0A2K5YLX4_A0A2K5YLX4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6PIV7_F6PIV7_MACMU_9544 and tr_G7P9Z3_G7P9Z3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6PIV7_F6PIV7_MACMU_9544 and tr_A0A096NXB7_A0A096NXB7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6PIV7_F6PIV7_MACMU_9544 and tr_A0A2K6DNC5_A0A2K6DNC5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7H582_F7H582_MACMU_9544 and tr_G7PHR3_G7PHR3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7H582_F7H582_MACMU_9544 and tr_A0A0D9R1Q2_A0A0D9R1Q2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7HUD3_F7HUD3_MACMU_9544 and tr_A0A096N1U3_A0A096N1U3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7HUD3_F7HUD3_MACMU_9544 and tr_A0A2K5KJS6_A0A2K5KJS6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H0Z0I5_H0Z0I5_TAEGU_59729 and tr_A0A091FPU3_A0A091FPU3_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0Z0I5_H0Z0I5_TAEGU_59729 and tr_A0A0A0A9Q9_A0A0A0A9Q9_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A091FAJ4_A0A091FAJ4_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A091INZ5_A0A091INZ5_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A087QRU2_A0A087QRU2_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A093H5L6_A0A093H5L6_STRCA_441894 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A091WKX5_A0A091WKX5_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A099ZJR3_A0A099ZJR3_TINGU_94827 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A091G0M7_A0A091G0M7_9AVES_55661 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A0A0A977_A0A0A0A977_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_H0ZQL1_H0ZQL1_TAEGU_59729 and tr_A0A091HLS6_A0A091HLS6_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F1MBR9_F1MBR9_BOVIN_9913 and sp_P19754_ADCY1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A337SKE2_A0A337SKE2_FELCA_9685 and tr_A0A2U3ZBK5_A0A2U3ZBK5_ODORO_9708 are exactly identical!
WARNING: Sequences tr_U3JXI1_U3JXI1_FICAL_59894 and tr_A0A2I0MXG6_A0A2I0MXG6_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3ICU3_U3ICU3_ANAPL_8839 and tr_A0A091VGC8_A0A091VGC8_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091ITL0_A0A091ITL0_EGRGA_188379 and tr_A0A091VU93_A0A091VU93_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091ITL0_A0A091ITL0_EGRGA_188379 and tr_A0A087QIC8_A0A087QIC8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091ITL0_A0A091ITL0_EGRGA_188379 and tr_A0A091FNN2_A0A091FNN2_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091ITL0_A0A091ITL0_EGRGA_188379 and tr_A0A0A0ACQ1_A0A0A0ACQ1_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091J4L8_A0A091J4L8_EGRGA_188379 and tr_A0A091WU68_A0A091WU68_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091J4L8_A0A091J4L8_EGRGA_188379 and tr_A0A091V5J2_A0A091V5J2_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091J4L8_A0A091J4L8_EGRGA_188379 and tr_A0A0A0ADN6_A0A0A0ADN6_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091J4L8_A0A091J4L8_EGRGA_188379 and tr_A0A1V4JW90_A0A1V4JW90_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A091J728_A0A091J728_EGRGA_188379 and tr_A0A093PVP2_A0A093PVP2_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A091J728_A0A091J728_EGRGA_188379 and tr_A0A091WGP3_A0A091WGP3_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091J728_A0A091J728_EGRGA_188379 and tr_A0A0A0A224_A0A0A0A224_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091VPW1_A0A091VPW1_NIPNI_128390 and tr_A0A091WHR6_A0A091WHR6_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A2I0MW10_A0A2I0MW10_COLLI_8932 and tr_A0A1V4KVB2_A0A1V4KVB2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V1D9L3_A0A0V1D9L3_TRIBR_45882 and tr_A0A0V0WV85_A0A0V0WV85_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V1D9L3_A0A0V1D9L3_TRIBR_45882 and tr_A0A0V1LQD1_A0A0V1LQD1_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V1D9L3_A0A0V1D9L3_TRIBR_45882 and tr_A0A0V0UF64_A0A0V0UF64_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0M3QW50_A0A0M3QW50_DROBS_30019 and tr_A0A0M5JBV1_A0A0M5JBV1_DROBS_30019 are exactly identical!
WARNING: Sequences tr_A0A0M3QWE1_A0A0M3QWE1_DROBS_30019 and tr_A0A0M4EYI5_A0A0M4EYI5_DROBS_30019 are exactly identical!
WARNING: Sequences tr_A0A226MXW2_A0A226MXW2_CALSU_9009 and tr_A0A226P381_A0A226P381_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226NDH1_A0A226NDH1_CALSU_9009 and tr_A0A226PNE7_A0A226PNE7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0PZU5_A0A2D0PZU5_ICTPU_7998 and tr_A0A2D0Q2I4_A0A2D0Q2I4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R2C3_A0A2D0R2C3_ICTPU_7998 and tr_A0A2D0R2I1_A0A2D0R2I1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2K5KK62_A0A2K5KK62_CERAT_9531 and tr_A0A2K5XHR8_A0A2K5XHR8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5LR05_A0A2K5LR05_CERAT_9531 and tr_A0A2K6ACX0_A0A2K6ACX0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U4B351_A0A2U4B351_TURTR_9739 and tr_A0A2Y9EGS6_A0A2Y9EGS6_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4CMM1_A0A2U4CMM1_TURTR_9739 and tr_A0A2Y9P4I3_A0A2Y9P4I3_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2Y9MPS3_A0A2Y9MPS3_DELLE_9749 and tr_A0A2Y9EQC1_A0A2Y9EQC1_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9MPS3_A0A2Y9MPS3_DELLE_9749 and tr_A0A383ZKM3_A0A383ZKM3_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2Y9Q4U8_A0A2Y9Q4U8_DELLE_9749 and tr_A0A2Y9SU21_A0A2Y9SU21_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9Q4U8_A0A2Y9Q4U8_DELLE_9749 and tr_A0A384A316_A0A384A316_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 102

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503.raxml.reduced.phy

Alignment comprises 1 partitions and 630 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 630 / 630
Gaps: 8.26 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 4 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 158 / 12640
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -944712.146577] Initial branch length optimization
[00:00:06 -787669.689926] Model parameter optimization (eps = 10.000000)
[00:00:52 -787137.629875] AUTODETECT spr round 1 (radius: 5)
[00:03:33 -453081.746896] AUTODETECT spr round 2 (radius: 10)
[00:06:24 -295780.605889] AUTODETECT spr round 3 (radius: 15)
[00:09:27 -211055.939007] AUTODETECT spr round 4 (radius: 20)
[00:12:31 -188822.042237] AUTODETECT spr round 5 (radius: 25)
[00:15:52 -175450.784085] SPR radius for FAST iterations: 25 (autodetect)
[00:15:52 -175450.784085] Model parameter optimization (eps = 3.000000)
[00:16:16 -175289.237409] FAST spr round 1 (radius: 25)
[00:19:05 -145465.780536] FAST spr round 2 (radius: 25)
[00:21:14 -144640.900521] FAST spr round 3 (radius: 25)
[00:23:09 -144553.779448] FAST spr round 4 (radius: 25)
[00:24:57 -144547.313589] FAST spr round 5 (radius: 25)
[00:26:40 -144547.302685] Model parameter optimization (eps = 1.000000)
[00:27:01 -144512.882528] SLOW spr round 1 (radius: 5)
[00:29:17 -144487.205066] SLOW spr round 2 (radius: 5)
[00:31:32 -144483.960293] SLOW spr round 3 (radius: 5)
[00:33:43 -144483.244243] SLOW spr round 4 (radius: 5)
[00:35:53 -144483.244100] SLOW spr round 5 (radius: 10)
[00:38:04 -144482.950365] SLOW spr round 6 (radius: 5)
[00:40:45 -144482.948958] SLOW spr round 7 (radius: 10)
[00:43:14 -144482.948814] SLOW spr round 8 (radius: 15)
[00:46:21 -144482.338755] SLOW spr round 9 (radius: 5)
[00:49:13 -144481.913086] SLOW spr round 10 (radius: 5)
[00:51:43 -144481.912309] SLOW spr round 11 (radius: 10)
[00:54:03 -144481.912130] SLOW spr round 12 (radius: 15)
[00:57:13 -144481.911954] SLOW spr round 13 (radius: 20)
[01:02:44 -144481.911806] SLOW spr round 14 (radius: 25)
[01:02:46] [worker #1] ML tree search #2, logLikelihood: -144484.007991
[01:10:20 -144481.911657] Model parameter optimization (eps = 0.100000)

[01:10:26] [worker #0] ML tree search #1, logLikelihood: -144481.879340

[01:10:26 -946128.356189] Initial branch length optimization
[01:10:33 -783679.976926] Model parameter optimization (eps = 10.000000)
[01:11:11 -783157.798000] AUTODETECT spr round 1 (radius: 5)
[01:13:56 -420685.461938] AUTODETECT spr round 2 (radius: 10)
[01:16:56 -279238.793588] AUTODETECT spr round 3 (radius: 15)
[01:19:48 -210702.685293] AUTODETECT spr round 4 (radius: 20)
[01:23:24 -188483.152597] AUTODETECT spr round 5 (radius: 25)
[01:27:32 -172608.635182] SPR radius for FAST iterations: 25 (autodetect)
[01:27:32 -172608.635182] Model parameter optimization (eps = 3.000000)
[01:28:02 -172398.357634] FAST spr round 1 (radius: 25)
[01:30:47 -145632.199056] FAST spr round 2 (radius: 25)
[01:33:04 -144598.966817] FAST spr round 3 (radius: 25)
[01:35:03 -144555.138398] FAST spr round 4 (radius: 25)
[01:36:51 -144534.187737] FAST spr round 5 (radius: 25)
[01:38:34 -144534.183676] Model parameter optimization (eps = 1.000000)
[01:39:19 -143594.458878] SLOW spr round 1 (radius: 5)
[01:41:38 -143514.616009] SLOW spr round 2 (radius: 5)
[01:43:54 -143510.363796] SLOW spr round 3 (radius: 5)
[01:46:08 -143510.362568] SLOW spr round 4 (radius: 10)
[01:48:22 -143507.296085] SLOW spr round 5 (radius: 5)
[01:51:03 -143507.295650] SLOW spr round 6 (radius: 10)
[01:53:32 -143507.295620] SLOW spr round 7 (radius: 15)
[01:56:50 -143504.159049] SLOW spr round 8 (radius: 5)
[01:59:06] [worker #1] ML tree search #4, logLikelihood: -143505.043289
[01:59:42 -143504.159035] SLOW spr round 9 (radius: 10)
[02:02:22 -143504.159028] SLOW spr round 10 (radius: 15)
[02:05:34 -143504.159023] SLOW spr round 11 (radius: 20)
[02:11:19 -143504.159019] SLOW spr round 12 (radius: 25)
[02:19:12 -143504.159015] Model parameter optimization (eps = 0.100000)

[02:19:23] [worker #0] ML tree search #3, logLikelihood: -143503.699926

[02:19:24 -934228.131881] Initial branch length optimization
[02:19:30 -780631.616249] Model parameter optimization (eps = 10.000000)
[02:20:10 -780155.433323] AUTODETECT spr round 1 (radius: 5)
[02:22:51 -426530.420483] AUTODETECT spr round 2 (radius: 10)
[02:25:46 -283502.360037] AUTODETECT spr round 3 (radius: 15)
[02:28:54 -219991.386166] AUTODETECT spr round 4 (radius: 20)
[02:32:17 -176661.260708] AUTODETECT spr round 5 (radius: 25)
[02:36:26 -173061.417323] SPR radius for FAST iterations: 25 (autodetect)
[02:36:26 -173061.417323] Model parameter optimization (eps = 3.000000)
[02:36:47 -172904.529703] FAST spr round 1 (radius: 25)
[02:39:23 -146095.352956] FAST spr round 2 (radius: 25)
[02:41:30 -144710.307410] FAST spr round 3 (radius: 25)
[02:43:23 -144543.158863] FAST spr round 4 (radius: 25)
[02:45:13 -144523.278792] FAST spr round 5 (radius: 25)
[02:46:56 -144521.701978] FAST spr round 6 (radius: 25)
[02:48:38 -144521.701432] Model parameter optimization (eps = 1.000000)
[02:48:55 -144508.859588] SLOW spr round 1 (radius: 5)
[02:51:10 -144485.446834] SLOW spr round 2 (radius: 5)
[02:53:20 -144485.444218] SLOW spr round 3 (radius: 10)
[02:55:32 -144485.443998] SLOW spr round 4 (radius: 15)
[02:58:52 -144484.833880] SLOW spr round 5 (radius: 5)
[03:01:43 -144484.833124] SLOW spr round 6 (radius: 10)
[03:04:21 -144484.408513] SLOW spr round 7 (radius: 5)
[03:06:58 -144484.408128] SLOW spr round 8 (radius: 10)
[03:09:22 -144484.408032] SLOW spr round 9 (radius: 15)
[03:12:32 -144484.407936] SLOW spr round 10 (radius: 20)
[03:18:00 -144484.407839] SLOW spr round 11 (radius: 25)
[03:25:37 -144484.407742] Model parameter optimization (eps = 0.100000)

[03:26:12] [worker #0] ML tree search #5, logLikelihood: -143564.852101

[03:26:12 -937223.038884] Initial branch length optimization
[03:26:17 -781842.489243] Model parameter optimization (eps = 10.000000)
[03:27:01 -781356.560892] AUTODETECT spr round 1 (radius: 5)
[03:29:41 -417470.091062] AUTODETECT spr round 2 (radius: 10)
[03:29:53] [worker #1] ML tree search #6, logLikelihood: -144495.738197
[03:32:39 -262159.052267] AUTODETECT spr round 3 (radius: 15)
[03:35:34 -211972.554860] AUTODETECT spr round 4 (radius: 20)
[03:38:47 -180805.618319] AUTODETECT spr round 5 (radius: 25)
[03:43:03 -169213.962778] SPR radius for FAST iterations: 25 (autodetect)
[03:43:03 -169213.962778] Model parameter optimization (eps = 3.000000)
[03:43:28 -169055.205234] FAST spr round 1 (radius: 25)
[03:46:10 -146180.011602] FAST spr round 2 (radius: 25)
[03:48:11 -144632.143433] FAST spr round 3 (radius: 25)
[03:50:05 -144542.331681] FAST spr round 4 (radius: 25)
[03:51:53 -144537.835395] FAST spr round 5 (radius: 25)
[03:53:36 -144537.835263] Model parameter optimization (eps = 1.000000)
[03:53:51 -144534.783831] SLOW spr round 1 (radius: 5)
[03:56:07 -144496.010335] SLOW spr round 2 (radius: 5)
[03:58:24 -144492.944567] SLOW spr round 3 (radius: 5)
[04:00:34 -144492.944073] SLOW spr round 4 (radius: 10)
[04:02:46 -144492.943851] SLOW spr round 5 (radius: 15)
[04:06:04 -144492.943834] SLOW spr round 6 (radius: 20)
[04:11:20 -144492.333827] SLOW spr round 7 (radius: 5)
[04:14:15 -144491.909308] SLOW spr round 8 (radius: 5)
[04:16:48 -144491.909013] SLOW spr round 9 (radius: 10)
[04:19:09 -144491.909008] SLOW spr round 10 (radius: 15)
[04:22:19 -144491.909003] SLOW spr round 11 (radius: 20)
[04:27:43 -144491.908999] SLOW spr round 12 (radius: 25)
[04:28:35] [worker #1] ML tree search #8, logLikelihood: -144483.055490
[04:35:12 -144491.908994] Model parameter optimization (eps = 0.100000)

[04:35:18] [worker #0] ML tree search #7, logLikelihood: -144491.867996

[04:35:18 -940954.226398] Initial branch length optimization
[04:35:25 -778537.845246] Model parameter optimization (eps = 10.000000)
[04:36:04 -777931.099285] AUTODETECT spr round 1 (radius: 5)
[04:38:46 -446726.315219] AUTODETECT spr round 2 (radius: 10)
[04:41:41 -302039.589354] AUTODETECT spr round 3 (radius: 15)
[04:44:55 -214931.624038] AUTODETECT spr round 4 (radius: 20)
[04:48:31 -176081.938402] AUTODETECT spr round 5 (radius: 25)
[04:52:30 -171210.348107] SPR radius for FAST iterations: 25 (autodetect)
[04:52:30 -171210.348107] Model parameter optimization (eps = 3.000000)
[04:52:56 -171050.985194] FAST spr round 1 (radius: 25)
[04:55:29 -146056.773432] FAST spr round 2 (radius: 25)
[04:57:33 -144579.719607] FAST spr round 3 (radius: 25)
[04:59:27 -144534.343361] FAST spr round 4 (radius: 25)
[05:01:13 -144531.387508] FAST spr round 5 (radius: 25)
[05:02:54 -144531.386696] Model parameter optimization (eps = 1.000000)
[05:03:03 -144530.545563] SLOW spr round 1 (radius: 5)
[05:05:19 -144487.112152] SLOW spr round 2 (radius: 5)
[05:07:34 -144481.489060] SLOW spr round 3 (radius: 5)
[05:09:42 -144481.486212] SLOW spr round 4 (radius: 10)
[05:11:54 -144481.223860] SLOW spr round 5 (radius: 5)
[05:14:35 -144481.223317] SLOW spr round 6 (radius: 10)
[05:17:02 -144481.223077] SLOW spr round 7 (radius: 15)
[05:20:12 -144481.222970] SLOW spr round 8 (radius: 20)
[05:25:40 -144480.346422] SLOW spr round 9 (radius: 5)
[05:28:34 -144480.346113] SLOW spr round 10 (radius: 10)
[05:31:14 -144480.346108] SLOW spr round 11 (radius: 15)
[05:33:56] [worker #1] ML tree search #10, logLikelihood: -143566.583485
[05:34:22 -144480.346102] SLOW spr round 12 (radius: 20)
[05:39:53 -144480.346096] SLOW spr round 13 (radius: 25)
[05:47:33 -144480.346090] Model parameter optimization (eps = 0.100000)

[05:47:39] [worker #0] ML tree search #9, logLikelihood: -144480.292689

[05:47:40 -945390.625169] Initial branch length optimization
[05:47:49 -790167.614285] Model parameter optimization (eps = 10.000000)
[05:48:30 -789536.167377] AUTODETECT spr round 1 (radius: 5)
[05:51:16 -436099.946833] AUTODETECT spr round 2 (radius: 10)
[05:54:08 -287910.069964] AUTODETECT spr round 3 (radius: 15)
[05:57:00 -231452.120247] AUTODETECT spr round 4 (radius: 20)
[06:00:26 -194080.911526] AUTODETECT spr round 5 (radius: 25)
[06:04:09 -177965.767076] SPR radius for FAST iterations: 25 (autodetect)
[06:04:09 -177965.767076] Model parameter optimization (eps = 3.000000)
[06:04:34 -177830.614924] FAST spr round 1 (radius: 25)
[06:07:14 -146975.723514] FAST spr round 2 (radius: 25)
[06:09:24 -144722.331278] FAST spr round 3 (radius: 25)
[06:11:19 -144563.154818] FAST spr round 4 (radius: 25)
[06:13:10 -144552.184893] FAST spr round 5 (radius: 25)
[06:14:54 -144551.619431] FAST spr round 6 (radius: 25)
[06:16:36 -144551.619117] Model parameter optimization (eps = 1.000000)
[06:16:55 -144516.436321] SLOW spr round 1 (radius: 5)
[06:19:10 -144499.004198] SLOW spr round 2 (radius: 5)
[06:21:26 -144497.442701] SLOW spr round 3 (radius: 5)
[06:23:35 -144497.442271] SLOW spr round 4 (radius: 10)
[06:25:48 -144493.167332] SLOW spr round 5 (radius: 5)
[06:28:31 -144492.828650] SLOW spr round 6 (radius: 5)
[06:30:57 -144492.827140] SLOW spr round 7 (radius: 10)
[06:33:14 -144492.826804] SLOW spr round 8 (radius: 15)
[06:36:22 -144492.826603] SLOW spr round 9 (radius: 20)
[06:41:39 -144492.178592] SLOW spr round 10 (radius: 5)
[06:42:52] [worker #1] ML tree search #12, logLikelihood: -144487.285653
[06:44:33 -144492.178586] SLOW spr round 11 (radius: 10)
[06:47:14 -144491.949514] SLOW spr round 12 (radius: 5)
[06:49:51 -144491.949506] SLOW spr round 13 (radius: 10)
[06:52:15 -144491.949500] SLOW spr round 14 (radius: 15)
[06:55:21 -144491.949494] SLOW spr round 15 (radius: 20)
[07:00:43 -144491.949488] SLOW spr round 16 (radius: 25)
[07:08:15 -144491.949482] Model parameter optimization (eps = 0.100000)

[07:08:23] [worker #0] ML tree search #11, logLikelihood: -144491.922541

[07:08:23 -942178.705618] Initial branch length optimization
[07:08:30 -779636.147724] Model parameter optimization (eps = 10.000000)
[07:09:13 -779126.093664] AUTODETECT spr round 1 (radius: 5)
[07:11:58 -444365.678386] AUTODETECT spr round 2 (radius: 10)
[07:14:48 -286379.738410] AUTODETECT spr round 3 (radius: 15)
[07:17:43 -236027.445428] AUTODETECT spr round 4 (radius: 20)
[07:21:19 -182818.137003] AUTODETECT spr round 5 (radius: 25)
[07:25:35 -177684.146628] SPR radius for FAST iterations: 25 (autodetect)
[07:25:35 -177684.146628] Model parameter optimization (eps = 3.000000)
[07:26:06 -177526.791098] FAST spr round 1 (radius: 25)
[07:28:46 -147281.345052] FAST spr round 2 (radius: 25)
[07:30:54 -144832.568632] FAST spr round 3 (radius: 25)
[07:32:55 -144536.550158] FAST spr round 4 (radius: 25)
[07:34:44 -144527.477282] FAST spr round 5 (radius: 25)
[07:36:26 -144526.925044] FAST spr round 6 (radius: 25)
[07:38:07 -144526.924865] Model parameter optimization (eps = 1.000000)
[07:38:25 -144513.575226] SLOW spr round 1 (radius: 5)
[07:40:45 -144487.626337] SLOW spr round 2 (radius: 5)
[07:42:54 -144486.448610] SLOW spr round 3 (radius: 5)
[07:45:04 -144485.941527] SLOW spr round 4 (radius: 5)
[07:47:11 -144485.941363] SLOW spr round 5 (radius: 10)
[07:49:22 -144485.691225] SLOW spr round 6 (radius: 5)
[07:51:44] [worker #1] ML tree search #14, logLikelihood: -144494.155023
[07:52:02 -144485.689654] SLOW spr round 7 (radius: 10)
[07:54:30 -144485.689605] SLOW spr round 8 (radius: 15)
[07:57:40 -144485.689556] SLOW spr round 9 (radius: 20)
[08:03:06 -144484.424758] SLOW spr round 10 (radius: 5)
[08:06:02 -144483.988101] SLOW spr round 11 (radius: 5)
[08:08:35 -144483.987520] SLOW spr round 12 (radius: 10)
[08:10:57 -144483.987438] SLOW spr round 13 (radius: 15)
[08:14:08 -144483.987376] SLOW spr round 14 (radius: 20)
[08:19:29 -144483.987323] SLOW spr round 15 (radius: 25)
[08:27:11 -144483.987271] Model parameter optimization (eps = 0.100000)

[08:27:17] [worker #0] ML tree search #13, logLikelihood: -144483.968451

[08:27:17 -947630.922779] Initial branch length optimization
[08:27:25 -792104.838224] Model parameter optimization (eps = 10.000000)
[08:28:17 -791533.926253] AUTODETECT spr round 1 (radius: 5)
[08:31:02 -436134.073494] AUTODETECT spr round 2 (radius: 10)
[08:33:57 -269084.478382] AUTODETECT spr round 3 (radius: 15)
[08:36:45 -200435.880694] AUTODETECT spr round 4 (radius: 20)
[08:40:01 -176446.704397] AUTODETECT spr round 5 (radius: 25)
[08:45:06 -172525.917093] SPR radius for FAST iterations: 25 (autodetect)
[08:45:06 -172525.917093] Model parameter optimization (eps = 3.000000)
[08:45:28 -172387.392602] FAST spr round 1 (radius: 25)
[08:48:01 -146449.891545] FAST spr round 2 (radius: 25)
[08:50:06 -144678.163538] FAST spr round 3 (radius: 25)
[08:51:59 -144582.163224] FAST spr round 4 (radius: 25)
[08:53:46 -144572.007322] FAST spr round 5 (radius: 25)
[08:55:28 -144568.541360] FAST spr round 6 (radius: 25)
[08:56:36] [worker #1] ML tree search #16, logLikelihood: -144485.756001
[08:57:08 -144568.541273] Model parameter optimization (eps = 1.000000)
[08:57:29 -144526.949241] SLOW spr round 1 (radius: 5)
[08:59:44 -144501.715415] SLOW spr round 2 (radius: 5)
[09:01:56 -144498.981799] SLOW spr round 3 (radius: 5)
[09:04:05 -144498.981731] SLOW spr round 4 (radius: 10)
[09:06:21 -144495.876214] SLOW spr round 5 (radius: 5)
[09:09:06 -144486.591122] SLOW spr round 6 (radius: 5)
[09:11:33 -144486.178896] SLOW spr round 7 (radius: 5)
[09:13:51 -144486.178888] SLOW spr round 8 (radius: 10)
[09:16:07 -144486.178885] SLOW spr round 9 (radius: 15)
[09:19:23 -144485.568945] SLOW spr round 10 (radius: 5)
[09:22:14 -144485.568941] SLOW spr round 11 (radius: 10)
[09:24:51 -144485.144425] SLOW spr round 12 (radius: 5)
[09:27:28 -144485.144132] SLOW spr round 13 (radius: 10)
[09:29:53 -144485.144129] SLOW spr round 14 (radius: 15)
[09:33:00 -144485.144126] SLOW spr round 15 (radius: 20)
[09:38:24 -144485.144122] SLOW spr round 16 (radius: 25)
[09:45:55 -144485.144119] Model parameter optimization (eps = 0.100000)

[09:46:00] [worker #0] ML tree search #15, logLikelihood: -144485.112743

[09:46:00 -943526.862343] Initial branch length optimization
[09:46:06 -784633.848165] Model parameter optimization (eps = 10.000000)
[09:46:49 -783995.683599] AUTODETECT spr round 1 (radius: 5)
[09:49:32 -429954.430821] AUTODETECT spr round 2 (radius: 10)
[09:52:21 -284512.959323] AUTODETECT spr round 3 (radius: 15)
[09:55:23 -215435.131391] AUTODETECT spr round 4 (radius: 20)
[09:58:47 -183946.650246] AUTODETECT spr round 5 (radius: 25)
[10:03:46 -177357.277646] SPR radius for FAST iterations: 25 (autodetect)
[10:03:46 -177357.277646] Model parameter optimization (eps = 3.000000)
[10:04:23 -177128.329302] FAST spr round 1 (radius: 25)
[10:07:05 -146009.319922] FAST spr round 2 (radius: 25)
[10:09:14 -144601.207509] FAST spr round 3 (radius: 25)
[10:11:13 -144538.501983] FAST spr round 4 (radius: 25)
[10:13:01 -144532.647307] FAST spr round 5 (radius: 25)
[10:14:43 -144532.645764] Model parameter optimization (eps = 1.000000)
[10:14:53 -144531.843565] SLOW spr round 1 (radius: 5)
[10:15:37] [worker #1] ML tree search #18, logLikelihood: -144485.260597
[10:17:14 -144500.648793] SLOW spr round 2 (radius: 5)
[10:19:25 -144497.718361] SLOW spr round 3 (radius: 5)
[10:21:35 -144497.718303] SLOW spr round 4 (radius: 10)
[10:23:49 -144497.434029] SLOW spr round 5 (radius: 5)
[10:26:31 -144497.432987] SLOW spr round 6 (radius: 10)
[10:29:00 -144497.432959] SLOW spr round 7 (radius: 15)
[10:32:07 -144497.432930] SLOW spr round 8 (radius: 20)
[10:37:49 -144496.785333] SLOW spr round 9 (radius: 5)
[10:40:46 -144496.773303] SLOW spr round 10 (radius: 10)
[10:43:29 -144496.773297] SLOW spr round 11 (radius: 15)
[10:46:34 -144496.773291] SLOW spr round 12 (radius: 20)
[10:52:18 -144496.773285] SLOW spr round 13 (radius: 25)
[10:59:56 -144496.773279] Model parameter optimization (eps = 0.100000)

[11:00:04] [worker #0] ML tree search #17, logLikelihood: -144496.743178

[11:00:05 -938212.708708] Initial branch length optimization
[11:00:13 -783740.701159] Model parameter optimization (eps = 10.000000)
[11:01:00 -783111.667857] AUTODETECT spr round 1 (radius: 5)
[11:03:43 -426150.816745] AUTODETECT spr round 2 (radius: 10)
[11:06:33 -293582.880242] AUTODETECT spr round 3 (radius: 15)
[11:09:30 -229997.197236] AUTODETECT spr round 4 (radius: 20)
[11:12:41 -197847.883468] AUTODETECT spr round 5 (radius: 25)
[11:16:28 -181148.104975] SPR radius for FAST iterations: 25 (autodetect)
[11:16:28 -181148.104975] Model parameter optimization (eps = 3.000000)
[11:16:54 -180977.274062] FAST spr round 1 (radius: 25)
[11:17:06] [worker #1] ML tree search #20, logLikelihood: -144488.815309
[11:19:31 -147539.754737] FAST spr round 2 (radius: 25)
[11:21:30 -144668.918545] FAST spr round 3 (radius: 25)
[11:23:23 -144541.973025] FAST spr round 4 (radius: 25)
[11:25:09 -144536.022261] FAST spr round 5 (radius: 25)
[11:26:50 -144536.020469] Model parameter optimization (eps = 1.000000)
[11:27:08 -144515.443586] SLOW spr round 1 (radius: 5)
[11:29:24 -144495.815786] SLOW spr round 2 (radius: 5)
[11:31:38 -144488.513317] SLOW spr round 3 (radius: 5)
[11:33:47 -144488.479023] SLOW spr round 4 (radius: 10)
[11:35:58 -144484.474082] SLOW spr round 5 (radius: 5)
[11:38:38 -144484.132806] SLOW spr round 6 (radius: 5)
[11:41:02 -144484.132126] SLOW spr round 7 (radius: 10)
[11:43:18 -144484.131781] SLOW spr round 8 (radius: 15)
[11:46:30 -144483.521673] SLOW spr round 9 (radius: 5)
[11:49:20 -144483.097020] SLOW spr round 10 (radius: 5)
[11:51:48 -144483.096619] SLOW spr round 11 (radius: 10)
[11:54:08 -144483.096518] SLOW spr round 12 (radius: 15)
[11:57:16 -144483.096419] SLOW spr round 13 (radius: 20)
[12:02:37 -144483.096321] SLOW spr round 14 (radius: 25)
[12:10:03 -144483.096224] Model parameter optimization (eps = 0.100000)

[12:10:13] [worker #0] ML tree search #19, logLikelihood: -144482.975798


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.274361,0.273649) (0.251522,1.670199) (0.327872,0.685706) (0.146246,1.914630) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -143503.699926

AIC score: 291017.399852 / AICc score: 8335077.399852 / BIC score: 299931.068090
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=630).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/O60503/3_mltree/O60503.raxml.log

Analysis started: 03-Jul-2021 00:03:47 / finished: 03-Jul-2021 12:14:01

Elapsed time: 43814.183 seconds