RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:17:14 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/2_msa/O60481_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/3_mltree/O60481.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805434 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/2_msa/O60481_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 467 sites WARNING: Sequences tr_B4QW61_B4QW61_DROSI_7240 and sp_P39768_OPA_DROME_7227 are exactly identical! WARNING: Sequences tr_A0A1D5PND2_A0A1D5PND2_CHICK_9031 and tr_A0A226N8R1_A0A226N8R1_CALSU_9009 are exactly identical! WARNING: Sequences sp_P46684_ZIC1_MOUSE_10090 and tr_Q9JKY2_Q9JKY2_RAT_10116 are exactly identical! WARNING: Sequences sp_P46684_ZIC1_MOUSE_10090 and tr_A0A3Q0D7C8_A0A3Q0D7C8_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2I3RZ60_A0A2I3RZ60_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and sp_Q15915_ZIC1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_F6SUA1_F6SUA1_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_F7IQP6_F7IQP6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A096N234_A0A096N234_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A0D9RG69_A0A0D9RG69_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2K5NTQ2_A0A2K5NTQ2_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2K6DCW9_A0A2K6DCW9_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2K6ACQ9_A0A2K6ACQ9_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2R9B6P4_A0A2R9B6P4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2U3V3B4_A0A2U3V3B4_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2Y9DQW6_A0A2Y9DQW6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2Y9JN42_A0A2Y9JN42_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YK13_M3YK13_MUSPF_9669 and tr_A0A2Y9FAG0_A0A2Y9FAG0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_H2Q7R3_H2Q7R3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and sp_O95409_ZIC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_G3T1T0_G3T1T0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_A0A337SDU7_A0A337SDU7_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_A0A096MM86_A0A096MM86_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_A0A0D9RY37_A0A0D9RY37_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_A0A1U7QUL2_A0A1U7QUL2_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_A0A2K5MGA9_A0A2K5MGA9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R8G5_G1R8G5_NOMLE_61853 and tr_A0A2Y9JGA6_A0A2Y9JGA6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_A0A2J8S7G6_A0A2J8S7G6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_H2R2A4_H2R2A4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and sp_Q9BZE0_GLIS2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_A0A0D9RB62_A0A0D9RB62_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_A0A2K5NRS5_A0A2K5NRS5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_A0A2K6BL12_A0A2K6BL12_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_A0A2K5YX84_A0A2K5YX84_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RFI4_G1RFI4_NOMLE_61853 and tr_A0A2R9A0C5_A0A2R9A0C5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QI08_G3QI08_GORGO_9595 and tr_H2PMA5_H2PMA5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QI08_G3QI08_GORGO_9595 and tr_H2QUH1_H2QUH1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QI08_G3QI08_GORGO_9595 and sp_Q5IS56_GLI3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QI08_G3QI08_GORGO_9595 and tr_A0A2R9CIB7_A0A2R9CIB7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RYT4_G3RYT4_GORGO_9595 and tr_A0A2I3RP19_A0A2I3RP19_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RYT4_G3RYT4_GORGO_9595 and tr_A0A2R9A8T3_A0A2R9A8T3_PANPA_9597 are exactly identical! WARNING: Sequences tr_E2R969_E2R969_CANLF_9615 and tr_A0A337RWA9_A0A337RWA9_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2R078_H2R078_PANTR_9598 and sp_P10070_GLI2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R078_H2R078_PANTR_9598 and tr_A0A2R9BF82_A0A2R9BF82_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7C919_K7C919_PANTR_9598 and tr_A0A2R9CG35_A0A2R9CG35_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6RAQ8_F6RAQ8_MONDO_13616 and tr_G3VNR8_G3VNR8_SARHA_9305 are exactly identical! WARNING: Sequences tr_I3LXN1_I3LXN1_ICTTR_43179 and tr_A0A2U3WBP4_A0A2U3WBP4_ODORO_9708 are exactly identical! WARNING: Sequences tr_W4ZK63_W4ZK63_STRPU_7668 and tr_W4ZLA1_W4ZLA1_STRPU_7668 are exactly identical! WARNING: Sequences tr_G7PSF8_G7PSF8_MACFA_9541 and tr_A0A2K6C1L1_A0A2K6C1L1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7Q1T9_G7Q1T9_MACFA_9541 and tr_A0A2I3NC06_A0A2I3NC06_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7Q1T9_G7Q1T9_MACFA_9541 and tr_A0A0D9R524_A0A0D9R524_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7Q1T9_G7Q1T9_MACFA_9541 and tr_A0A2K5MM50_A0A2K5MM50_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7Q1T9_G7Q1T9_MACFA_9541 and tr_A0A2K6DGL8_A0A2K6DGL8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7Q1T9_G7Q1T9_MACFA_9541 and tr_A0A2K5XCT1_A0A2K5XCT1_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3JRB6_U3JRB6_FICAL_59894 and tr_A0A087QHQ4_A0A087QHQ4_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3JRB6_U3JRB6_FICAL_59894 and tr_A0A091GKA3_A0A091GKA3_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3JRB6_U3JRB6_FICAL_59894 and tr_A0A218UP99_A0A218UP99_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JX97_U3JX97_FICAL_59894 and tr_A0A091GIM9_A0A091GIM9_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3JX97_U3JX97_FICAL_59894 and tr_A0A1V4K3N1_A0A1V4K3N1_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3JX97_U3JX97_FICAL_59894 and tr_A0A218V955_A0A218V955_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A096NQT8_A0A096NQT8_PAPAN_9555 and tr_A0A2K5MMY9_A0A2K5MMY9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NQT8_A0A096NQT8_PAPAN_9555 and tr_A0A2K6AYF5_A0A2K6AYF5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NQT8_A0A096NQT8_PAPAN_9555 and tr_A0A2K5XZA4_A0A2K5XZA4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151P270_A0A151P270_ALLMI_8496 and tr_A0A3Q0GBM5_A0A3Q0GBM5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A093HXB8_A0A093HXB8_STRCA_441894 and tr_A0A099ZM68_A0A099ZM68_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2I0LZF1_A0A2I0LZF1_COLLI_8932 and tr_A0A1V4L125_A0A1V4L125_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0X3C7_A0A0V0X3C7_9BILA_92179 and tr_A0A0V0UYQ1_A0A0V0UYQ1_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0X3C7_A0A0V0X3C7_9BILA_92179 and tr_A0A0V1LMG5_A0A0V1LMG5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0X3C7_A0A0V0X3C7_9BILA_92179 and tr_A0A0V1P2J6_A0A0V1P2J6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0X3C7_A0A0V0X3C7_9BILA_92179 and tr_A0A0V0TX87_A0A0V0TX87_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3MTN1_A0A1S3MTN1_SALSA_8030 and tr_A0A1S3MXK1_A0A1S3MXK1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NV46_A0A1S3NV46_SALSA_8030 and tr_A0A060WII9_A0A060WII9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3STQ2_A0A1S3STQ2_SALSA_8030 and tr_A0A060XYN4_A0A060XYN4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NKH2_A0A226NKH2_CALSU_9009 and tr_A0A226PK76_A0A226PK76_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5LFP4_A0A2K5LFP4_CERAT_9531 and tr_A0A2K5YY92_A0A2K5YY92_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5MA04_A0A2K5MA04_CERAT_9531 and tr_A0A2K6BDS3_A0A2K6BDS3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5MA04_A0A2K5MA04_CERAT_9531 and tr_A0A2K5XAP2_A0A2K5XAP2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5MZH1_A0A2K5MZH1_CERAT_9531 and tr_A0A2K5ZWS0_A0A2K5ZWS0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V869_A0A2U3V869_TURTR_9739 and tr_A0A2Y9LJX8_A0A2Y9LJX8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B920_A0A2U4B920_TURTR_9739 and tr_A0A2Y9NCZ5_A0A2Y9NCZ5_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 80 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481.raxml.reduced.phy Alignment comprises 1 partitions and 467 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 467 Gaps: 29.55 % Invariant sites: 2.78 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/3_mltree/O60481.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 117 / 9360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -166359.207788 [00:00:00 -166359.207788] Initial branch length optimization [00:00:01 -116442.667986] Model parameter optimization (eps = 0.100000) [00:00:43] Tree #1, final logLikelihood: -116280.615593 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.132339,0.100125) (0.109251,0.162650) (0.303197,0.770544) (0.455213,1.615404) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O60481/4_raxmlng_ancestral/O60481.raxml.log Analysis started: 04-Jun-2021 14:17:14 / finished: 04-Jun-2021 14:18:02 Elapsed time: 47.505 seconds