RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:31:31 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/2_msa/O60260_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/3_mltree/O60260.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676691 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/2_msa/O60260_nogap_msa.fasta [00:00:00] Loaded alignment with 980 taxa and 465 sites WARNING: Fully undetermined sequences found: 2 WARNING: Sequences tr_V7CC62_V7CC62_PHAVU_3885 and tr_A0A067L326_A0A067L326_JATCU_180498 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_I1MG31_I1MG31_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A0A0KVL0_A0A0A0KVL0_CUCSA_3659 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A0L9U1V9_A0A0L9U1V9_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A0L9UK58_A0A0L9UK58_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A1S2XK07_A0A1S2XK07_CICAR_3827 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A1S2YGP4_A0A1S2YGP4_CICAR_3827 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A1S3TVM4_A0A1S3TVM4_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A1S3U0T4_A0A1S3U0T4_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A1S3BFA9_A0A1S3BFA9_CUCME_3656 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A200RDI5_A0A200RDI5_9MAGN_56857 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A2G3DHH3_A0A2G3DHH3_CAPCH_80379 are exactly identical! WARNING: Sequences tr_V7CGW4_V7CGW4_PHAVU_3885 and tr_A0A2P6REZ4_A0A2P6REZ4_ROSCH_74649 are exactly identical! WARNING: Sequences tr_E2ARN6_E2ARN6_CAMFO_104421 and tr_E2BPH6_E2BPH6_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A0A6YW67_A0A0A6YW67_MOUSE_10090 and sp_Q8SWD4_UBIQ_ENCCU_284813 are exactly identical! WARNING: Sequences tr_A0A0A6YW67_A0A0A6YW67_MOUSE_10090 and tr_A0A1U8BTM1_A0A1U8BTM1_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5J8K3_W5J8K3_ANODA_43151 and tr_A0A084WT89_A0A084WT89_ANOSI_74873 are exactly identical! WARNING: Sequences tr_W5J8K3_W5J8K3_ANODA_43151 and tr_A0A087RB55_A0A087RB55_APTFO_9233 are exactly identical! WARNING: Sequences tr_G0WEJ0_G0WEJ0_NAUDC_1071378 and tr_M7P7U6_M7P7U6_PNEMU_1069680 are exactly identical! WARNING: Sequences tr_E2LWP9_E2LWP9_MONPE_554373 and tr_A0A0C3L513_A0A0C3L513_9HOMO_1051891 are exactly identical! WARNING: Sequences tr_E2LWP9_E2LWP9_MONPE_554373 and tr_A0A2G5BJL9_A0A2G5BJL9_COERN_763665 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_C5Z0N6_C5Z0N6_SORBI_4558 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A368S088_A0A368S088_SETIT_4555 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_J3KZD9_J3KZD9_ORYBR_4533 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_J3M468_J3M468_ORYBR_4533 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A2WPB5_A2WPB5_ORYSI_39946 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and sp_P27923_RS27A_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_I1NMR0_I1NMR0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_I1PSP4_I1PSP4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A0E0C164_A0A0E0C164_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A0E0MVN0_A0A0E0MVN0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A0E0PHV9_A0A0E0PHV9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_I1HLI1_I1HLI1_BRADI_15368 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A287EXK4_A0A287EXK4_HORVV_112509 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_W5A9E1_W5A9E1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_W5ADS2_W5ADS2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A0D3EN93_A0A0D3EN93_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and sp_P51431_R27AB_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and sp_Q9ARZ9_R27AA_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A2T7DMV9_A0A2T7DMV9_9POAL_1504633 are exactly identical! WARNING: Sequences tr_C5XIY6_C5XIY6_SORBI_4558 and tr_A0A2T7E8L1_A0A2T7E8L1_9POAL_1504633 are exactly identical! WARNING: Sequences tr_B0CTY4_B0CTY4_LACBS_486041 and tr_V2WUC0_V2WUC0_MONRO_1381753 are exactly identical! WARNING: Sequences tr_B0CTY4_B0CTY4_LACBS_486041 and tr_A0A067TEB9_A0A067TEB9_GALM3_685588 are exactly identical! WARNING: Sequences tr_B0CTY4_B0CTY4_LACBS_486041 and tr_A0A067Q3A3_A0A067Q3A3_9HOMO_933084 are exactly identical! WARNING: Sequences tr_B0CTY4_B0CTY4_LACBS_486041 and tr_A0A0C2YUM2_A0A0C2YUM2_HEBCY_686832 are exactly identical! WARNING: Sequences tr_B0CTY4_B0CTY4_LACBS_486041 and tr_A0A0D7B053_A0A0D7B053_9AGAR_1314674 are exactly identical! WARNING: Sequences tr_B0CTY4_B0CTY4_LACBS_486041 and tr_A0A0C9ZW46_A0A0C9ZW46_9HOMO_765257 are exactly identical! WARNING: Sequences tr_B0D970_B0D970_LACBS_486041 and tr_A0A164UML9_A0A164UML9_9HOMO_1314777 are exactly identical! WARNING: Sequences tr_B0D970_B0D970_LACBS_486041 and tr_A0A166IK48_A0A166IK48_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_B0D970_B0D970_LACBS_486041 and tr_A0A1Y2ILK7_A0A1Y2ILK7_PYCCO_1353009 are exactly identical! WARNING: Sequences tr_B0D970_B0D970_LACBS_486041 and tr_A0A316U712_A0A316U712_9BASI_1684307 are exactly identical! WARNING: Sequences tr_D8S8X4_D8S8X4_SELML_88036 and tr_M2SKW0_M2SKW0_COCH5_701091 are exactly identical! WARNING: Sequences tr_B8P0U2_B8P0U2_POSPM_561896 and tr_J4G7Q1_J4G7Q1_9APHY_599839 are exactly identical! WARNING: Sequences tr_B8P0U2_B8P0U2_POSPM_561896 and tr_S8EEM3_S8EEM3_FOMPI_743788 are exactly identical! WARNING: Sequences tr_B8P0U2_B8P0U2_POSPM_561896 and tr_A0A1X6N728_A0A1X6N728_9APHY_670580 are exactly identical! WARNING: Sequences sp_P62975_UBIQ_RABIT_9986 and tr_A0A091V1F5_A0A091V1F5_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P62975_UBIQ_RABIT_9986 and tr_A0A091WVR2_A0A091WVR2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_C4LY85_C4LY85_ENTHI_5759 and tr_C4M760_C4M760_ENTHI_5759 are exactly identical! WARNING: Sequences tr_B7FGN8_B7FGN8_MEDTR_3880 and tr_G7K080_G7K080_MEDTR_3880 are exactly identical! WARNING: Sequences tr_F6V625_F6V625_HORSE_9796 and tr_A0A2U4BWZ4_A0A2U4BWZ4_TURTR_9739 are exactly identical! WARNING: Sequences tr_F6V625_F6V625_HORSE_9796 and tr_A0A2Y9RTQ0_A0A2Y9RTQ0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A0B2XHD1_A0A0B2XHD1_METRA_655844 and tr_A0A0B4HNN7_A0A0B4HNN7_METMF_1276143 are exactly identical! WARNING: Sequences tr_A0A0B2XHD1_A0A0B2XHD1_METRA_655844 and tr_A0A0D9PBB2_A0A0D9PBB2_METAN_1291518 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2K1JPM8_A0A2K1JPM8_PHYPA_3218 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A9RJI9_A9RJI9_PHYPA_3218 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A9S8F4_A9S8F4_PHYPA_3218 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A9T8M3_A9T8M3_PHYPA_3218 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2K1YC75_A0A2K1YC75_POPTR_3694 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A3N7ELV5_A0A3N7ELV5_POPTR_3694 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A9P863_A9P863_POPTR_3694 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A9P8M2_A9P8M2_POPTR_3694 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_M5X9E1_M5X9E1_PRUPE_3760 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_B9RN74_B9RN74_RICCO_3988 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_B9SHC5_B9SHC5_RICCO_3988 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A5C8S5_A5C8S5_VITVI_29760 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_F6HZD7_F6HZD7_VITVI_29760 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_O04829_O04829_SOLTU_4113 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A061E838_A0A061E838_THECC_3641 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A067FAM9_A0A067FAM9_CITSI_2711 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A067JWR6_A0A067JWR6_JATCU_180498 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A067LEE4_A0A067LEE4_JATCU_180498 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_V4RT13_V4RT13_9ROSI_85681 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_V4VGA7_V4VGA7_9ROSI_85681 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A058ZUJ2_A0A058ZUJ2_EUCGR_71139 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A059D878_A0A059D878_EUCGR_71139 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1S4C0C1_A0A1S4C0C1_TOBAC_4097 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_O49906_O49906_TOBAC_4097 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1Q3AZ27_A0A1Q3AZ27_CEPFO_3775 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1J6IMQ7_A0A1J6IMQ7_NICAT_49451 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1J6IVZ6_A0A1J6IVZ6_NICAT_49451 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1U7VG87_A0A1U7VG87_NICSY_4096 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1U7WCX2_A0A1U7WCX2_NICSY_4096 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1U7ZJL5_A0A1U7ZJL5_NELNU_4432 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A1U8F749_A0A1U8F749_CAPAN_4072 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2G3B562_A0A2G3B562_CAPCH_80379 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2I4DYU6_A0A2I4DYU6_JUGRE_51240 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2I4HFK2_A0A2I4HFK2_JUGRE_51240 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2H5N7X7_A0A2H5N7X7_CITUN_55188 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2H5QQM6_A0A2H5QQM6_CITUN_55188 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2P5EFA3_A0A2P5EFA3_TREOI_63057 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2P5ETC5_A0A2P5ETC5_TREOI_63057 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2P5B352_A0A2P5B352_PARAD_3476 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2P5BUM9_A0A2P5BUM9_PARAD_3476 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2R6PCS2_A0A2R6PCS2_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2R6PJH9_A0A2R6PJH9_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_K4DHR7_K4DHR7_SOLLC_4081 and tr_A0A2R6RE82_A0A2R6RE82_ACTCH_1590841 are exactly identical! WARNING: Sequences sp_P62980_RS27A_SOLLC_4081 and sp_P62981_RS27A_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A158NTC7_A0A158NTC7_ATTCE_12957 and tr_A0A151X1A3_A0A151X1A3_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NTC7_A0A158NTC7_ATTCE_12957 and tr_A0A151JTF5_A0A151JTF5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NTC7_A0A158NTC7_ATTCE_12957 and tr_A0A151IPR1_A0A151IPR1_9HYME_456900 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_G2R5D5_G2R5D5_THITE_578455 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_S7QK97_S7QK97_GLOTA_670483 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A0C3RQ26_A0A0C3RQ26_PHLGI_745531 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A0C3E6Z7_A0A0C3E6Z7_9HOMO_1036808 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A0D7B7N6_A0A0D7B7N6_9AGAR_1314674 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A0D2KXE7_A0A0D2KXE7_9AGAR_945553 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A0D0D3G7_A0A0D0D3G7_9HOMO_930991 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A166MNQ2_A0A166MNQ2_9HOMO_436010 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A165UQF0_A0A165UQF0_9HOMO_1314782 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A165FC91_A0A165FC91_9APHY_1314785 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A165KCB0_A0A165KCB0_EXIGL_1314781 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A1B7N273_A0A1B7N273_9HOMO_1314800 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A2H3EMA4_A0A2H3EMA4_ARMGA_47427 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A2H3IX37_A0A2H3IX37_WOLCO_742152 are exactly identical! WARNING: Sequences tr_C7ZPM0_C7ZPM0_NECH7_660122 and tr_A0A371D2T3_A0A371D2T3_9APHY_139420 are exactly identical! WARNING: Sequences tr_A0A180GH69_A0A180GH69_PUCT1_630390 and tr_E3KFB8_E3KFB8_PUCGT_418459 are exactly identical! WARNING: Sequences tr_A0A180GHZ8_A0A180GHZ8_PUCT1_630390 and tr_E3KDZ2_E3KDZ2_PUCGT_418459 are exactly identical! WARNING: Sequences tr_G8ZYR7_G8ZYR7_TORDC_1076872 and tr_G8BZM7_G8BZM7_TETPH_1071381 are exactly identical! WARNING: Sequences tr_I2FP55_I2FP55_USTH4_1128400 and tr_E6ZP53_E6ZP53_SPORE_999809 are exactly identical! WARNING: Sequences tr_I2FP55_I2FP55_USTH4_1128400 and tr_M9MH65_M9MH65_PSEA3_1151754 are exactly identical! WARNING: Sequences tr_I2FP55_I2FP55_USTH4_1128400 and tr_R9P0T2_R9P0T2_PSEHS_1305764 are exactly identical! WARNING: Sequences sp_P59232_R27AB_ARATH_3702 and tr_D7LFZ1_D7LFZ1_ARALL_81972 are exactly identical! WARNING: Sequences sp_P59232_R27AB_ARATH_3702 and tr_A0A078D4W1_A0A078D4W1_BRANA_3708 are exactly identical! WARNING: Sequences sp_P59232_R27AB_ARATH_3702 and tr_A0A078FAH6_A0A078FAH6_BRANA_3708 are exactly identical! WARNING: Sequences sp_P59232_R27AB_ARATH_3702 and tr_R0HUN2_R0HUN2_9BRAS_81985 are exactly identical! WARNING: Sequences sp_P59232_R27AB_ARATH_3702 and tr_A0A0D3B727_A0A0D3B727_BRAOL_109376 are exactly identical! WARNING: Sequences sp_P59232_R27AB_ARATH_3702 and tr_A0A0D3BWB1_A0A0D3BWB1_BRAOL_109376 are exactly identical! WARNING: Sequences sp_P59233_R27AC_ARATH_3702 and tr_D7LSV4_D7LSV4_ARALL_81972 are exactly identical! WARNING: Sequences sp_P59233_R27AC_ARATH_3702 and tr_R0H9G6_R0H9G6_9BRAS_81985 are exactly identical! WARNING: Sequences tr_D2V4G9_D2V4G9_NAEGR_5762 and tr_D2VBV6_D2VBV6_NAEGR_5762 are exactly identical! WARNING: Sequences tr_D2V4G9_D2V4G9_NAEGR_5762 and tr_D2VRS6_D2VRS6_NAEGR_5762 are exactly identical! WARNING: Sequences tr_A9SWJ1_A9SWJ1_PHYPA_3218 and tr_Q33BN2_Q33BN2_PHYPA_3218 are exactly identical! WARNING: Sequences tr_A2WT34_A2WT34_ORYSI_39946 and tr_I1NQ11_I1NQ11_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2WT34_A2WT34_ORYSI_39946 and sp_P0C032_RUB3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_H1V7J6_H1V7J6_COLHI_759273 and tr_A0A0N0DE09_A0A0N0DE09_FUSLA_179993 are exactly identical! WARNING: Sequences tr_H1V7J6_H1V7J6_COLHI_759273 and tr_A0A109FDP9_A0A109FDP9_9BASI_1305733 are exactly identical! WARNING: Sequences tr_H1V7J6_H1V7J6_COLHI_759273 and tr_A0A177VXQ7_A0A177VXQ7_9BASI_13291 are exactly identical! WARNING: Sequences tr_H1V7J6_H1V7J6_COLHI_759273 and tr_A0A1X2IQJ4_A0A1X2IQJ4_9FUNG_90262 are exactly identical! WARNING: Sequences tr_H1VYD6_H1VYD6_COLHI_759273 and tr_A0A135UZV2_A0A135UZV2_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_H1VYD6_H1VYD6_COLHI_759273 and tr_A0A166N3S0_A0A166N3S0_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1VYD6_H1VYD6_COLHI_759273 and tr_A0A167AFX4_A0A167AFX4_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_H1VYD6_H1VYD6_COLHI_759273 and tr_A0A1G4BLA0_A0A1G4BLA0_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_F4P6V2_F4P6V2_BATDJ_684364 and tr_A0A167K9A4_A0A167K9A4_PHYB8_763407 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_M3CGL9_M3CGL9_SPHMS_692275 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_M2ZP55_M2ZP55_PSEFD_383855 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_N1PHK4_N1PHK4_DOTSN_675120 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_A0A139HH45_A0A139HH45_9PEZI_321146 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_A0A1V8UBH8_A0A1V8UBH8_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_A0A1X7RWT2_A0A1X7RWT2_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_A0A2D3UU46_A0A2D3UU46_9PEZI_112498 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_A0A2G5HV41_A0A2G5HV41_CERBT_122368 are exactly identical! WARNING: Sequences tr_F9XDN2_F9XDN2_ZYMTI_336722 and tr_A0A2S6C2B1_A0A2S6C2B1_9PEZI_357750 are exactly identical! WARNING: Sequences tr_F9XLE3_F9XLE3_ZYMTI_336722 and tr_G0RKY4_G0RKY4_HYPJQ_431241 are exactly identical! WARNING: Sequences tr_F9XLE3_F9XLE3_ZYMTI_336722 and tr_N1PZQ4_N1PZQ4_DOTSN_675120 are exactly identical! WARNING: Sequences tr_F8Q3X5_F8Q3X5_SERL3_936435 and tr_A0A2A9NVI8_A0A2A9NVI8_9AGAR_703135 are exactly identical! WARNING: Sequences tr_K5WX04_K5WX04_AGABU_597362 and tr_A0A166GCZ2_A0A166GCZ2_9HOMO_1314672 are exactly identical! WARNING: Sequences tr_K5WX04_K5WX04_AGABU_597362 and tr_A0A2H3CAW4_A0A2H3CAW4_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_D7KNF5_D7KNF5_ARALL_81972 and tr_A0A078GMF0_A0A078GMF0_BRANA_3708 are exactly identical! WARNING: Sequences tr_D7KNF5_D7KNF5_ARALL_81972 and tr_R0GU26_R0GU26_9BRAS_81985 are exactly identical! WARNING: Sequences tr_D7KNF5_D7KNF5_ARALL_81972 and tr_A0A0D3D748_A0A0D3D748_BRAOL_109376 are exactly identical! WARNING: Sequences tr_L5KWC8_L5KWC8_PTEAL_9402 and tr_A0A091E260_A0A091E260_FUKDA_885580 are exactly identical! WARNING: Sequences tr_L5KWC8_L5KWC8_PTEAL_9402 and tr_A0A2R8ZFL7_A0A2R8ZFL7_PANPA_9597 are exactly identical! WARNING: Sequences tr_L5KWC8_L5KWC8_PTEAL_9402 and tr_A0A2U4C2P8_A0A2U4C2P8_TURTR_9739 are exactly identical! WARNING: Sequences tr_L5KWC8_L5KWC8_PTEAL_9402 and tr_A0A2U3WZD7_A0A2U3WZD7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M0TND7_M0TND7_MUSAM_214687 and tr_A0A3B6CB49_A0A3B6CB49_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M0TND7_M0TND7_MUSAM_214687 and sp_P69326_UBIQ_WHEAT_4565 are exactly identical! WARNING: Sequences tr_W1PEZ7_W1PEZ7_AMBTC_13333 and tr_A0A1U8ASY0_A0A1U8ASY0_NELNU_4432 are exactly identical! WARNING: Sequences tr_W1PEZ7_W1PEZ7_AMBTC_13333 and tr_A0A1U8B557_A0A1U8B557_NELNU_4432 are exactly identical! WARNING: Sequences tr_A0A015JK74_A0A015JK74_9GLOM_1432141 and tr_A0A2H5T5E7_A0A2H5T5E7_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015JZ71_A0A015JZ71_9GLOM_1432141 and tr_A0A2I1F4W9_A0A2I1F4W9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JZ71_A0A015JZ71_9GLOM_1432141 and tr_U9U7X8_U9U7X8_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015K8R2_A0A015K8R2_9GLOM_1432141 and tr_A0A2I1GPC9_A0A2I1GPC9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015K8R2_A0A015K8R2_9GLOM_1432141 and tr_A0A2H5SIK1_A0A2H5SIK1_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015M1H1_A0A015M1H1_9GLOM_1432141 and tr_A0A2I1GPY0_A0A2I1GPY0_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015M1H1_A0A015M1H1_9GLOM_1432141 and tr_A0A2H5RM81_A0A2H5RM81_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015M1H1_A0A015M1H1_9GLOM_1432141 and tr_A0A2Z6S6G3_A0A2Z6S6G3_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A158N8N0_A0A158N8N0_ONCVO_6282 and tr_A0A182EVH7_A0A182EVH7_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A158N8N0_A0A158N8N0_ONCVO_6282 and tr_A0A1I7VUG5_A0A1I7VUG5_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A067E068_A0A067E068_CITSI_2711 and tr_A0A059A2C9_A0A059A2C9_EUCGR_71139 are exactly identical! WARNING: Sequences tr_A0A067E6K8_A0A067E6K8_CITSI_2711 and tr_A0A2H5Q8D7_A0A2H5Q8D7_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067G443_A0A067G443_CITSI_2711 and tr_V4UUQ0_V4UUQ0_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067R2I5_A0A067R2I5_ZOONE_136037 and tr_A0A2J7PQG8_A0A2J7PQG8_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067M4V2_A0A067M4V2_9HOMO_930990 and tr_A0A0C3PQF6_A0A0C3PQF6_PISTI_870435 are exactly identical! WARNING: Sequences tr_A0A074SQ86_A0A074SQ86_9HOMO_1423351 and tr_A0A0K6G2W8_A0A0K6G2W8_9HOMO_456999 are exactly identical! WARNING: Sequences tr_A0A078GKT6_A0A078GKT6_BRANA_3708 and tr_A0A2H3X0H4_A0A2H3X0H4_PHODC_42345 are exactly identical! WARNING: Sequences tr_A0A078GKT6_A0A078GKT6_BRANA_3708 and tr_A0A2R6QBR0_A0A2R6QBR0_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_A0A060SBK4_A0A060SBK4_PYCCI_5643 and tr_A0A1Y2IUG8_A0A1Y2IUG8_PYCCO_1353009 are exactly identical! WARNING: Sequences tr_A0A060SBK4_A0A060SBK4_PYCCI_5643 and tr_A0A2G8RT33_A0A2G8RT33_9APHY_1077348 are exactly identical! WARNING: Sequences tr_A0A060SBK4_A0A060SBK4_PYCCI_5643 and tr_A0A371D9M0_A0A371D9M0_9APHY_139420 are exactly identical! WARNING: Sequences tr_A0A0A0LQL6_A0A0A0LQL6_CUCSA_3659 and tr_A0A2C9VSB5_A0A2C9VSB5_MANES_3983 are exactly identical! WARNING: Sequences tr_A0A0A0LQL6_A0A0A0LQL6_CUCSA_3659 and tr_A0A2C9WNI8_A0A2C9WNI8_MANES_3983 are exactly identical! WARNING: Sequences tr_A0A0A0LQL6_A0A0A0LQL6_CUCSA_3659 and tr_A0A1U7ZEF2_A0A1U7ZEF2_NELNU_4432 are exactly identical! WARNING: Sequences tr_V4TBY1_V4TBY1_9ROSI_85681 and tr_A0A0V1DSU4_A0A0V1DSU4_9BILA_268475 are exactly identical! WARNING: Sequences tr_V4LVC5_V4LVC5_EUTSA_72664 and tr_V4N2E1_V4N2E1_EUTSA_72664 are exactly identical! WARNING: Sequences tr_A0A022REN0_A0A022REN0_ERYGU_4155 and tr_A0A022S3M2_A0A022S3M2_ERYGU_4155 are exactly identical! WARNING: Sequences tr_A0A0D2LS10_A0A0D2LS10_GOSRA_29730 and tr_A0A0D2T035_A0A0D2T035_GOSRA_29730 are exactly identical! WARNING: Sequences tr_A0A0D2LS10_A0A0D2LS10_GOSRA_29730 and tr_A0A0D2UMI5_A0A0D2UMI5_GOSRA_29730 are exactly identical! WARNING: Sequences tr_A0A0D2LS10_A0A0D2LS10_GOSRA_29730 and tr_Q2QDG1_Q2QDG1_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0G2FJ44_A0A0G2FJ44_9PEZI_1214573 and tr_A0A194UQA6_A0A194UQA6_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A0C3LB18_A0A0C3LB18_9HOMO_1051891 and tr_A0A0C3Q5B6_A0A0C3Q5B6_9HOMO_1051891 are exactly identical! WARNING: Sequences tr_A0A1S7UIX8_A0A1S7UIX8_ROSNE_77044 and tr_A0A218ZA62_A0A218ZA62_9HELO_503106 are exactly identical! WARNING: Sequences tr_A0A0L0W1P6_A0A0L0W1P6_9BASI_1165861 and tr_A0A2N5W4W8_A0A2N5W4W8_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A0P1BCG2_A0A0P1BCG2_9BASI_401625 and tr_A0A316VQE2_A0A316VQE2_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A0P1BE24_A0A0P1BE24_9BASI_401625 and tr_A0A316VYI9_A0A316VYI9_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A2P6FH79_A0A2P6FH79_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A2J6TWM4_A0A2J6TWM4_9HELO_1095630 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A2J6Q2M2_A0A2J6Q2M2_9HELO_1745343 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A2J6RV49_A0A2J6RV49_9HELO_1149755 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A2T3APW9_A0A2T3APW9_AMORE_857342 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A2V1BRN5_A0A2V1BRN5_9HELO_1485229 are exactly identical! WARNING: Sequences tr_A0A194X4J7_A0A194X4J7_9HELO_149040 and tr_A0A370TCG8_A0A370TCG8_9PEZI_2005443 are exactly identical! WARNING: Sequences tr_A0A151UF79_A0A151UF79_CAJCA_3821 and tr_A0A2R6RSG4_A0A2R6RSG4_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_A0A164VPS7_A0A164VPS7_9HOMO_1314777 and tr_A0A166CXI7_A0A166CXI7_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A167RZC2_A0A167RZC2_9BASI_1330018 and tr_A0A165H9Y2_A0A165H9Y2_9BASI_1353952 are exactly identical! WARNING: Sequences tr_A0A167PIR9_A0A167PIR9_PHYB8_763407 and tr_A0A197JKZ3_A0A197JKZ3_9FUNG_1314771 are exactly identical! WARNING: Sequences tr_A0A163ISN1_A0A163ISN1_ABSGL_4829 and tr_A0A168QSU1_A0A168QSU1_ABSGL_4829 are exactly identical! WARNING: Sequences tr_A0A163J696_A0A163J696_ABSGL_4829 and tr_A0A1X2GHW2_A0A1X2GHW2_9FUNG_101127 are exactly identical! WARNING: Sequences tr_A0A1A6A3E6_A0A1A6A3E6_9TREE_1296121 and tr_A0A1B9IHC7_A0A1B9IHC7_9TREE_1331196 are exactly identical! WARNING: Sequences tr_A0A1A6A3E6_A0A1A6A3E6_9TREE_1296121 and tr_A0A1B9GR80_A0A1B9GR80_9TREE_1296120 are exactly identical! WARNING: Sequences tr_A0A1A6A3E6_A0A1A6A3E6_9TREE_1296121 and tr_A0A1B9G0Q5_A0A1B9G0Q5_9TREE_1296100 are exactly identical! WARNING: Sequences tr_A0A1A6A3E6_A0A1A6A3E6_9TREE_1296121 and tr_A0A1B9I7Q9_A0A1B9I7Q9_9TREE_1296096 are exactly identical! WARNING: Sequences tr_A0A1S3YFH3_A0A1S3YFH3_TOBAC_4097 and tr_A0A1U7Y2U5_A0A1U7Y2U5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YHR2_A0A1S3YHR2_TOBAC_4097 and tr_A0A1U7XEP4_A0A1U7XEP4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZGE9_A0A1S3ZGE9_TOBAC_4097 and tr_A0A1U8NWI5_A0A1U8NWI5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A1S4ALM3_A0A1S4ALM3_TOBAC_4097 and tr_A0A1U7VY22_A0A1U7VY22_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3IQ86_A0A1S3IQ86_LINUN_7574 and tr_A0A1S3IQ93_A0A1S3IQ93_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3IQ86_A0A1S3IQ86_LINUN_7574 and tr_A0A1S3IQP3_A0A1S3IQP3_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A2C9UND2_A0A2C9UND2_MANES_3983 and tr_A0A2C9UT49_A0A2C9UT49_MANES_3983 are exactly identical! WARNING: Sequences tr_A0A1E3PRS2_A0A1E3PRS2_9ASCO_857566 and tr_A0A1Y1ZIL9_A0A1Y1ZIL9_9PLEO_1231657 are exactly identical! WARNING: Sequences tr_A0A1Y2H051_A0A1Y2H051_9FUNG_64571 and tr_A0A1X2GVL6_A0A1X2GVL6_9FUNG_101127 are exactly identical! WARNING: Sequences tr_A0A1Y2H051_A0A1Y2H051_9FUNG_64571 and tr_A0A2G4SNU5_A0A2G4SNU5_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A238FQ69_A0A238FQ69_9BASI_269621 and tr_A0A2X0MNM1_A0A2X0MNM1_9BASI_796604 are exactly identical! WARNING: Sequences tr_A0A2H3E7L1_A0A2H3E7L1_ARMGA_47427 and tr_A0A2H3BQN3_A0A2H3BQN3_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3E7L1_A0A2H3E7L1_ARMGA_47427 and tr_A0A284R5Q0_A0A284R5Q0_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2H3Z8L8_A0A2H3Z8L8_PHODC_42345 and tr_A0A2H3ZII0_A0A2H3ZII0_PHODC_42345 are exactly identical! WARNING: Duplicate sequences found: 245 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260.raxml.reduced.phy Alignment comprises 1 partitions and 465 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 465 Gaps: 65.11 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/3_mltree/O60260.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 117 / 9360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -184284.003903 [00:00:00 -184284.003903] Initial branch length optimization [00:00:01 -128881.748572] Model parameter optimization (eps = 0.100000) [00:01:14] Tree #1, final logLikelihood: -127981.521304 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.170966,0.269589) (0.129701,0.936884) (0.339127,0.768519) (0.360206,1.587338) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O60260/4_raxmlng_ancestral/O60260.raxml.log Analysis started: 03-Jun-2021 02:31:31 / finished: 03-Jun-2021 02:32:49 Elapsed time: 78.614 seconds Consumed energy: 4.993 Wh