RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 04-Jul-2021 10:00:33 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/2_msa/O60243_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/2_msa/O60243_trimmed_msa.fasta
[00:00:00] Loaded alignment with 503 taxa and 307 sites

WARNING: Sequences tr_B4QSR8_B4QSR8_DROSI_7240 and tr_Q9VDR6_Q9VDR6_DROME_7227 are exactly identical!
WARNING: Sequences tr_F1NY39_F1NY39_CHICK_9031 and sp_Q76KB2_H6ST1_CHICK_9031 are exactly identical!
WARNING: Sequences tr_M3YZ12_M3YZ12_MUSPF_9669 and tr_F7H6W5_F7H6W5_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3YZ12_M3YZ12_MUSPF_9669 and tr_G1LBH8_G1LBH8_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YZ12_M3YZ12_MUSPF_9669 and tr_A0A2U3WJF0_A0A2U3WJF0_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YZ12_M3YZ12_MUSPF_9669 and tr_A0A2Y9LEI4_A0A2Y9LEI4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_B4JSZ8_B4JSZ8_DROGR_7222 and tr_B4K0W9_B4K0W9_DROGR_7222 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_G3RE22_G3RE22_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_H2PWT2_H2PWT2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_A0A2J8JSL9_A0A2J8JSL9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_F6Z463_F6Z463_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_A0A096MMZ8_A0A096MMZ8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_A0A2K5KXF2_A0A2K5KXF2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_A0A2K6D410_A0A2K6D410_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QMN9_G1QMN9_NOMLE_61853 and tr_A0A2R9AL13_A0A2R9AL13_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_A0A2I2YYD2_A0A2I2YYD2_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_H2P789_H2P789_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_H2QIP8_H2QIP8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and sp_O60243_H6ST1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_F7DP42_F7DP42_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_A0A096NRW6_A0A096NRW6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_A0A2K5M7L0_A0A2K5M7L0_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1S1F9_G1S1F9_NOMLE_61853 and tr_A0A2K6BEF9_A0A2K6BEF9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1SBP7_G1SBP7_NOMLE_61853 and tr_F6TT40_F6TT40_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1SBP7_G1SBP7_NOMLE_61853 and tr_A0A2K5XT30_A0A2K5XT30_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1PZ45_G1PZ45_MYOLU_59463 and tr_G1L3T9_G1L3T9_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1PZ45_G1PZ45_MYOLU_59463 and tr_A0A1U7UZM9_A0A1U7UZM9_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_J9NYF4_J9NYF4_CANLF_9615 and tr_A0A2I2UUD9_A0A2I2UUD9_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A087ZVC4_A0A087ZVC4_APIME_7460 and tr_A0A2A3E821_A0A2A3E821_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NAY9_A0A158NAY9_ATTCE_12957 and tr_A0A151HZ44_A0A151HZ44_9HYME_520822 are exactly identical!
WARNING: Sequences tr_I3MCN4_I3MCN4_ICTTR_43179 and tr_A0A2U4A1L7_A0A2U4A1L7_TURTR_9739 are exactly identical!
WARNING: Sequences tr_I3MCN4_I3MCN4_ICTTR_43179 and tr_A0A2Y9MKT9_A0A2Y9MKT9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A0K0JMU7_A0A0K0JMU7_BRUMA_6279 and tr_A0A0R3QV16_A0A0R3QV16_9BILA_42155 are exactly identical!
WARNING: Sequences tr_G3U461_G3U461_LOXAF_9785 and tr_A0A0D9SA81_A0A0D9SA81_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7Q3P9_G7Q3P9_MACFA_9541 and tr_A0A0D9R635_A0A0D9R635_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_R0JQH9_R0JQH9_ANAPL_8839 and tr_A0A091W5X0_A0A091W5X0_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_R0JQH9_R0JQH9_ANAPL_8839 and tr_A0A091G600_A0A091G600_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A2K6VR74_A0A2K6VR74_ONCVO_6282 and tr_A0A182EJH6_A0A182EJH6_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A096NEL8_A0A096NEL8_PAPAN_9555 and tr_A0A2K5M6Q3_A0A2K5M6Q3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A096NEL8_A0A096NEL8_PAPAN_9555 and tr_A0A2K6DAE1_A0A2K6DAE1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0Q3TF48_A0A0Q3TF48_AMAAE_12930 and tr_A0A226NIP2_A0A226NIP2_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A0Q3TF48_A0A0Q3TF48_AMAAE_12930 and tr_A0A226PHZ5_A0A226PHZ5_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A091J9Y3_A0A091J9Y3_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A093QQH7_A0A093QQH7_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A091USM5_A0A091USM5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A087RBT9_A0A087RBT9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A093HI10_A0A093HI10_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A091W0T9_A0A091W0T9_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A091GLE5_A0A091GLE5_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A099ZWF3_A0A099ZWF3_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091EH64_A0A091EH64_CORBR_85066 and tr_A0A093GL65_A0A093GL65_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1S3IZJ9_A0A1S3IZJ9_LINUN_7574 and tr_A0A1S3K0P5_A0A1S3K0P5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A3Q0CHS8_A0A3Q0CHS8_MESAU_10036 and tr_A0A2U3YW66_A0A2U3YW66_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A226MP68_A0A226MP68_CALSU_9009 and tr_A0A226PK94_A0A226PK94_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226MU32_A0A226MU32_CALSU_9009 and tr_A0A226PTI2_A0A226PTI2_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2U4A631_A0A2U4A631_TURTR_9739 and tr_A0A2Y9NT63_A0A2Y9NT63_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3VZQ2_A0A2U3VZQ2_ODORO_9708 and tr_A0A2Y9LEL8_A0A2Y9LEL8_ENHLU_391180 are exactly identical!
WARNING: Duplicate sequences found: 57

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243.raxml.reduced.phy

Alignment comprises 1 partitions and 307 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 307 / 307
Gaps: 21.85 %
Invariant sites: 0.33 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 503 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 307 / 24560
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -143076.716172] Initial branch length optimization
[00:00:02 -114893.125196] Model parameter optimization (eps = 10.000000)
[00:00:28 -114681.117302] AUTODETECT spr round 1 (radius: 5)
[00:01:25 -77064.571711] AUTODETECT spr round 2 (radius: 10)
[00:02:33 -61851.102304] AUTODETECT spr round 3 (radius: 15)
[00:03:50 -57112.027723] AUTODETECT spr round 4 (radius: 20)
[00:05:28 -50118.109756] AUTODETECT spr round 5 (radius: 25)
[00:07:20 -48484.554176] SPR radius for FAST iterations: 25 (autodetect)
[00:07:20 -48484.554176] Model parameter optimization (eps = 3.000000)
[00:07:40 -48345.733014] FAST spr round 1 (radius: 25)
[00:09:10 -41222.975399] FAST spr round 2 (radius: 25)
[00:10:24 -40685.079931] FAST spr round 3 (radius: 25)
[00:11:21 -40638.823932] FAST spr round 4 (radius: 25)
[00:12:15 -40619.576398] FAST spr round 5 (radius: 25)
[00:12:59 -40619.576095] Model parameter optimization (eps = 1.000000)
[00:13:14 -40593.309574] SLOW spr round 1 (radius: 5)
[00:14:24 -40585.982968] SLOW spr round 2 (radius: 5)
[00:15:33 -40582.112954] SLOW spr round 3 (radius: 5)
[00:16:42 -40582.102175] SLOW spr round 4 (radius: 10)
[00:17:50 -40582.101970] SLOW spr round 5 (radius: 15)
[00:19:48 -40582.101876] SLOW spr round 6 (radius: 20)
[00:22:45 -40582.101806] SLOW spr round 7 (radius: 25)
[00:26:17 -40582.101743] Model parameter optimization (eps = 0.100000)

[00:26:26] [worker #0] ML tree search #1, logLikelihood: -40581.982127

[00:26:26 -141264.752742] Initial branch length optimization
[00:26:29 -114413.585796] Model parameter optimization (eps = 10.000000)
[00:27:00 -114245.040392] AUTODETECT spr round 1 (radius: 5)
[00:27:54 -78371.396021] AUTODETECT spr round 2 (radius: 10)
[00:29:01 -60380.490276] AUTODETECT spr round 3 (radius: 15)
[00:30:22 -50867.758182] AUTODETECT spr round 4 (radius: 20)
[00:32:12 -47729.396137] AUTODETECT spr round 5 (radius: 25)
[00:33:10] [worker #4] ML tree search #5, logLikelihood: -40560.293693
[00:33:23] [worker #2] ML tree search #3, logLikelihood: -40574.456135
[00:34:14 -47593.058701] SPR radius for FAST iterations: 25 (autodetect)
[00:34:14 -47593.058701] Model parameter optimization (eps = 3.000000)
[00:34:45 -47396.480473] FAST spr round 1 (radius: 25)
[00:36:06 -40879.281317] FAST spr round 2 (radius: 25)
[00:37:11 -40662.448636] FAST spr round 3 (radius: 25)
[00:38:07 -40633.937639] FAST spr round 4 (radius: 25)
[00:38:54 -40628.842229] FAST spr round 5 (radius: 25)
[00:39:37 -40628.840624] Model parameter optimization (eps = 1.000000)
[00:39:53 -40604.410076] SLOW spr round 1 (radius: 5)
[00:41:02 -40590.647804] SLOW spr round 2 (radius: 5)
[00:42:09 -40588.947356] SLOW spr round 3 (radius: 5)
[00:43:14 -40588.944831] SLOW spr round 4 (radius: 10)
[00:44:19 -40588.887686] SLOW spr round 5 (radius: 15)
[00:44:23] [worker #1] ML tree search #2, logLikelihood: -40564.374053
[00:46:13 -40588.651186] SLOW spr round 6 (radius: 5)
[00:46:29] [worker #3] ML tree search #4, logLikelihood: -40571.949026
[00:47:43 -40588.650832] SLOW spr round 7 (radius: 10)
[00:49:06 -40588.399681] SLOW spr round 8 (radius: 5)
[00:50:27 -40588.399321] SLOW spr round 9 (radius: 10)
[00:51:44 -40588.399306] SLOW spr round 10 (radius: 15)
[00:53:31 -40588.399291] SLOW spr round 11 (radius: 20)
[00:56:11 -40588.399277] SLOW spr round 12 (radius: 25)
[00:59:25 -40588.399263] Model parameter optimization (eps = 0.100000)

[00:59:37] [worker #0] ML tree search #6, logLikelihood: -40587.633925

[00:59:37 -142872.845406] Initial branch length optimization
[00:59:39 -115667.151833] Model parameter optimization (eps = 10.000000)
[01:00:12 -115390.803318] AUTODETECT spr round 1 (radius: 5)
[01:01:08 -77993.155992] AUTODETECT spr round 2 (radius: 10)
[01:02:15 -60187.092382] AUTODETECT spr round 3 (radius: 15)
[01:03:31 -52561.565180] AUTODETECT spr round 4 (radius: 20)
[01:05:15 -48404.584339] AUTODETECT spr round 5 (radius: 25)
[01:07:16 -46685.185591] SPR radius for FAST iterations: 25 (autodetect)
[01:07:16 -46685.185591] Model parameter optimization (eps = 3.000000)
[01:07:35 -46506.612616] FAST spr round 1 (radius: 25)
[01:09:00 -41172.071497] FAST spr round 2 (radius: 25)
[01:10:04 -40725.415708] FAST spr round 3 (radius: 25)
[01:11:00 -40694.856039] FAST spr round 4 (radius: 25)
[01:11:48 -40685.515564] FAST spr round 5 (radius: 25)
[01:12:31 -40685.513933] Model parameter optimization (eps = 1.000000)
[01:12:47 -40651.506313] SLOW spr round 1 (radius: 5)
[01:13:55 -40623.044595] SLOW spr round 2 (radius: 5)
[01:15:02 -40619.932562] SLOW spr round 3 (radius: 5)
[01:16:11 -40619.932110] SLOW spr round 4 (radius: 10)
[01:17:06] [worker #2] ML tree search #8, logLikelihood: -40556.799739
[01:17:18 -40617.785243] SLOW spr round 5 (radius: 5)
[01:18:43 -40615.928055] SLOW spr round 6 (radius: 5)
[01:19:47] [worker #4] ML tree search #10, logLikelihood: -40588.006984
[01:19:54 -40615.927975] SLOW spr round 7 (radius: 10)
[01:21:03 -40615.927906] SLOW spr round 8 (radius: 15)
[01:22:59 -40615.693656] SLOW spr round 9 (radius: 5)
[01:24:27 -40615.693589] SLOW spr round 10 (radius: 10)
[01:25:47 -40615.443161] SLOW spr round 11 (radius: 5)
[01:27:08 -40615.442924] SLOW spr round 12 (radius: 10)
[01:28:23 -40615.442906] SLOW spr round 13 (radius: 15)
[01:30:15 -40615.442216] SLOW spr round 14 (radius: 20)
[01:31:30] [worker #1] ML tree search #7, logLikelihood: -40576.752035
[01:33:07 -40615.442200] SLOW spr round 15 (radius: 25)
[01:34:26] [worker #3] ML tree search #9, logLikelihood: -40569.763552
[01:36:21 -40615.261974] SLOW spr round 16 (radius: 5)
[01:37:52 -40615.261678] SLOW spr round 17 (radius: 10)
[01:39:17 -40615.261656] SLOW spr round 18 (radius: 15)
[01:41:04 -40615.261641] SLOW spr round 19 (radius: 20)
[01:43:54 -40615.261628] SLOW spr round 20 (radius: 25)
[01:47:03 -40615.261614] Model parameter optimization (eps = 0.100000)

[01:47:07] [worker #0] ML tree search #11, logLikelihood: -40615.201974

[01:47:07 -141051.318976] Initial branch length optimization
[01:47:09 -113980.520408] Model parameter optimization (eps = 10.000000)
[01:47:47 -113754.526665] AUTODETECT spr round 1 (radius: 5)
[01:48:42 -79830.726480] AUTODETECT spr round 2 (radius: 10)
[01:49:47 -60292.432280] AUTODETECT spr round 3 (radius: 15)
[01:51:11 -51212.306448] AUTODETECT spr round 4 (radius: 20)
[01:52:57 -46727.298209] AUTODETECT spr round 5 (radius: 25)
[01:54:58 -46152.843300] SPR radius for FAST iterations: 25 (autodetect)
[01:54:58 -46152.843300] Model parameter optimization (eps = 3.000000)
[01:55:18 -45971.609866] FAST spr round 1 (radius: 25)
[01:56:41 -40896.446562] FAST spr round 2 (radius: 25)
[01:57:47 -40661.132382] FAST spr round 3 (radius: 25)
[01:58:45 -40634.086412] FAST spr round 4 (radius: 25)
[01:59:33 -40627.969066] FAST spr round 5 (radius: 25)
[02:00:15 -40627.968718] Model parameter optimization (eps = 1.000000)
[02:00:30 -40591.288407] SLOW spr round 1 (radius: 5)
[02:01:39 -40580.186551] SLOW spr round 2 (radius: 5)
[02:02:43 -40580.185121] SLOW spr round 3 (radius: 10)
[02:03:51 -40577.747386] SLOW spr round 4 (radius: 5)
[02:05:16 -40577.194485] SLOW spr round 5 (radius: 5)
[02:06:27 -40577.193203] SLOW spr round 6 (radius: 10)
[02:07:28] [worker #3] ML tree search #14, logLikelihood: -40568.279367
[02:07:35 -40577.193036] SLOW spr round 7 (radius: 15)
[02:09:23 -40576.428288] SLOW spr round 8 (radius: 5)
[02:10:50 -40575.259594] SLOW spr round 9 (radius: 5)
[02:12:04 -40575.258776] SLOW spr round 10 (radius: 10)
[02:12:27] [worker #4] ML tree search #15, logLikelihood: -40566.118394
[02:13:14 -40575.258702] SLOW spr round 11 (radius: 15)
[02:15:01 -40575.258409] SLOW spr round 12 (radius: 20)
[02:17:47 -40575.203697] SLOW spr round 13 (radius: 25)
[02:20:57 -40575.201954] Model parameter optimization (eps = 0.100000)

[02:21:09] [worker #0] ML tree search #16, logLikelihood: -40574.981588

[02:29:01] [worker #2] ML tree search #13, logLikelihood: -40578.182323
[02:39:22] [worker #1] ML tree search #12, logLikelihood: -40569.628064
[02:44:34] [worker #4] ML tree search #20, logLikelihood: -40572.772425
[02:51:16] [worker #3] ML tree search #19, logLikelihood: -40562.976642
[03:08:31] [worker #2] ML tree search #18, logLikelihood: -40563.182426
[03:18:09] [worker #1] ML tree search #17, logLikelihood: -40555.523334

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.301756,0.418677) (0.203143,0.763033) (0.316216,1.030815) (0.178885,2.195243) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -40555.523334

AIC score: 83129.046667 / AICc score: 2121309.046667 / BIC score: 86889.436044
Free parameters (model + branch lengths): 1009

WARNING: Number of free parameters (K=1009) is larger than alignment size (n=307).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O60243/3_mltree/O60243.raxml.log

Analysis started: 04-Jul-2021 10:00:33 / finished: 04-Jul-2021 13:18:42

Elapsed time: 11889.145 seconds

Consumed energy: 843.579 Wh (= 4 km in an electric car, or 21 km with an e-scooter!)