RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 02:31:23 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/2_msa/O43918_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/3_mltree/O43918.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676683 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/2_msa/O43918_nogap_msa.fasta [00:00:00] Loaded alignment with 983 taxa and 545 sites WARNING: Sequences tr_F1QWV5_F1QWV5_DANRE_7955 and tr_F1RBT2_F1RBT2_DANRE_7955 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_E9PU01_E9PU01_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2U3WWY2_A0A2U3WWY2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y223_M3Y223_MUSPF_9669 and tr_A0A337S159_A0A337S159_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_G3GUN0_G3GUN0_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_G3RRA9_G3RRA9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_J9NW81_J9NW81_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_K7B9Z5_K7B9Z5_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_F7B896_F7B896_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_W5PC02_W5PC02_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_I3MA51_I3MA51_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_H0X1S9_H0X1S9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_H0VCI4_H0VCI4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and sp_Q14839_CHD4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_F6ZS61_F6ZS61_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_F7FFV5_F7FFV5_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_F1SLR5_F1SLR5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_F1N3F6_F1N3F6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A337STL3_A0A337STL3_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2I3LYY7_A0A2I3LYY7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A091CMZ7_A0A091CMZ7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A0D9RDH2_A0A0D9RDH2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A1S3A1J3_A0A1S3A1J3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2K5KML3_A0A2K5KML3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2R9A4P1_A0A2R9A4P1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2U3Y2N2_A0A2U3Y2N2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2Y9L8Z4_A0A2Y9L8Z4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2Y9NDV6_A0A2Y9NDV6_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A2Y9T5A1_A0A2Y9T5A1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YZJ4_M3YZJ4_MUSPF_9669 and tr_A0A383Z5R8_A0A383Z5R8_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3GMQ6_A0A2I3GMQ6_NOMLE_61853 and tr_A0A0D9RFE3_A0A0D9RFE3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_D8SK03_D8SK03_SELML_88036 and tr_D8T4M1_D8T4M1_SELML_88036 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_H2QC61_H2QC61_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and sp_Q12873_CHD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A1D5RBC8_A0A1D5RBC8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_F7E9J1_F7E9J1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_G7PTJ5_G7PTJ5_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A2I3MAB0_A0A2I3MAB0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A3Q0E7Q2_A0A3Q0E7Q2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A2K5NL31_A0A2K5NL31_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A2K6AMM4_A0A2K6AMM4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A2K5YLF9_A0A2K5YLF9_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_F1PLN6_F1PLN6_CANLF_9615 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_H2PZQ4_H2PZQ4_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and sp_Q9UPN9_TRI33_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_F7GNI0_F7GNI0_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_G7NW81_G7NW81_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_A0A0D9S688_A0A0D9S688_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_A0A2K6CNS5_A0A2K6CNS5_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_A0A2U3W0G1_A0A2U3W0G1_ODORO_9708 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_A0A2Y9J1V4_A0A2Y9J1V4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2N6A8_H2N6A8_PONAB_9601 and tr_A0A384CNE6_A0A384CNE6_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2NDL4_H2NDL4_PONAB_9601 and tr_A0A2I3RXP1_A0A2I3RXP1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NDL4_H2NDL4_PONAB_9601 and sp_Q96BD5_PF21A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NDL4_H2NDL4_PONAB_9601 and tr_A0A2R9BZI8_A0A2R9BZI8_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and sp_O15164_TIF1A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and tr_F6VVE4_F6VVE4_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and tr_G7P0X1_G7P0X1_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and tr_A0A0D9R8Q1_A0A0D9R8Q1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and tr_A0A2K5LKM0_A0A2K5LKM0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and tr_A0A2K6DBD8_A0A2K6DBD8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PNM6_H2PNM6_PONAB_9601 and tr_A0A2R8ZN70_A0A2R8ZN70_PANPA_9597 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2U3ZDU7_A0A2U3ZDU7_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1PQV6_F1PQV6_CANLF_9615 and tr_A0A384CWV0_A0A384CWV0_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3SB75_A0A2I3SB75_PANTR_9598 and sp_Q8TDI0_CHD5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3SB75_A0A2I3SB75_PANTR_9598 and tr_A0A2R9B2T3_A0A2R9B2T3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TUL5_A0A2I3TUL5_PANTR_9598 and tr_A0A2R9B596_A0A2R9B596_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5NYI0_W5NYI0_SHEEP_9940 and tr_A0A2Y9TJN8_A0A2Y9TJN8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5NYI0_W5NYI0_SHEEP_9940 and tr_A0A384A1H4_A0A384A1H4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A087ZSL5_A0A087ZSL5_APIME_7460 and tr_A0A2A3EEQ6_A0A2A3EEQ6_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NPU9_A0A158NPU9_ATTCE_12957 and tr_A0A151JSY6_A0A151JSY6_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3MTW5_I3MTW5_ICTTR_43179 and tr_A0A2Y9Q6N5_A0A2Y9Q6N5_DELLE_9749 are exactly identical! WARNING: Sequences tr_F7C307_F7C307_MACMU_9544 and tr_A0A0D9S8T5_A0A0D9S8T5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H0ZK94_H0ZK94_TAEGU_59729 and tr_U3JUQ7_U3JUQ7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZK94_H0ZK94_TAEGU_59729 and tr_A0A091FQK9_A0A091FQK9_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZK94_H0ZK94_TAEGU_59729 and tr_A0A093PZZ2_A0A093PZZ2_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1MI34_G1MI34_AILME_9646 and tr_A0A2U3X3H5_A0A2U3X3H5_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1MI34_G1MI34_AILME_9646 and tr_A0A2U3YA26_A0A2U3YA26_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1MI34_G1MI34_AILME_9646 and tr_A0A384CLF4_A0A384CLF4_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PQB7_G7PQB7_MACFA_9541 and tr_A0A2K6DKV3_A0A2K6DKV3_MACNE_9545 are exactly identical! WARNING: Sequences tr_T1K2K7_T1K2K7_TETUR_32264 and tr_T1K2L0_T1K2L0_TETUR_32264 are exactly identical! WARNING: Sequences tr_A0A015L1T0_A0A015L1T0_9GLOM_1432141 and tr_A0A2H5U225_A0A2H5U225_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2I3LIW6_A0A2I3LIW6_PAPAN_9555 and tr_A0A2K6DTM7_A0A2K6DTM7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MNS3_A0A2I3MNS3_PAPAN_9555 and tr_A0A2K5KQB3_A0A2K5KQB3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A091DDX2_A0A091DDX2_FUKDA_885580 and tr_A0A2K5XWD3_A0A2K5XWD3_MANLE_9568 are exactly identical! WARNING: Sequences tr_V4UCK9_V4UCK9_9ROSI_85681 and tr_A0A2H5P9M3_A0A2H5P9M3_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4UCK9_V4UCK9_9ROSI_85681 and tr_A0A2H5P9N9_A0A2H5P9N9_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0Q3UU72_A0A0Q3UU72_AMAAE_12930 and tr_A0A087QYM6_A0A087QYM6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093PIK8_A0A093PIK8_9PASS_328815 and tr_A0A087RH92_A0A087RH92_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093PIK8_A0A093PIK8_9PASS_328815 and tr_A0A099ZZF7_A0A099ZZF7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093PIK8_A0A093PIK8_9PASS_328815 and tr_A0A091I8R0_A0A091I8R0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091GGJ8_A0A091GGJ8_9AVES_55661 and tr_A0A2I0MLN9_A0A2I0MLN9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091GGJ8_A0A091GGJ8_9AVES_55661 and tr_A0A218VD67_A0A218VD67_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0V1D6T8_A0A0V1D6T8_TRIBR_45882 and tr_A0A0V0VYM5_A0A0V0VYM5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A1S3TVN9_A0A1S3TVN9_VIGRR_3916 and tr_A0A3Q0EWA5_A0A3Q0EWA5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A2D0RV48_A0A2D0RV48_ICTPU_7998 and tr_A0A2D0RWP1_A0A2D0RWP1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T5S2_A0A2D0T5S2_ICTPU_7998 and tr_W5UKX4_W5UKX4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5M9J4_A0A2K5M9J4_CERAT_9531 and tr_A0A2K5XQ84_A0A2K5XQ84_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5NIY5_A0A2K5NIY5_CERAT_9531 and tr_A0A2K5XT62_A0A2K5XT62_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3UZB3_A0A2U3UZB3_TURTR_9739 and tr_A0A2U4CEB3_A0A2U4CEB3_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4CEA7_A0A2U4CEA7_TURTR_9739 and tr_A0A2U4CEB9_A0A2U4CEB9_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4CGU1_A0A2U4CGU1_TURTR_9739 and tr_A0A2Y9NPI3_A0A2Y9NPI3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9S9V9_A0A2Y9S9V9_PHYCD_9755 and tr_A0A383Z3E7_A0A383Z3E7_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 103 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918.raxml.reduced.phy Alignment comprises 1 partitions and 545 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 545 Gaps: 40.37 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/3_mltree/O43918.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 137 / 10960 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -318529.789121 [00:00:00 -318529.789121] Initial branch length optimization [00:00:01 -188804.634589] Model parameter optimization (eps = 0.100000) [00:00:51] Tree #1, final logLikelihood: -188218.136264 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.096111,0.350461) (0.081439,1.395435) (0.261977,0.591536) (0.560473,1.244851) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/O43918/4_raxmlng_ancestral/O43918.raxml.log Analysis started: 03-Jun-2021 02:31:23 / finished: 03-Jun-2021 02:32:20 Elapsed time: 56.917 seconds Consumed energy: 4.734 Wh