RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:55:37 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/2_msa/O43541_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/3_mltree/O43541.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622804137 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/2_msa/O43541_nogap_msa.fasta [00:00:00] Loaded alignment with 996 taxa and 496 sites WARNING: Sequences tr_A0A1D5PB14_A0A1D5PB14_CHICK_9031 and sp_Q9W734_SMAD6_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_G1NQ95_G1NQ95_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_R0LKC0_R0LKC0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_A0A091IR94_A0A091IR94_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_A0A091UXL2_A0A091UXL2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_A0A091GKS7_A0A091GKS7_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_A0A0A0AQ18_A0A0A0AQ18_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_A0A2I0MCR9_A0A2I0MCR9_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1P4N1_F1P4N1_CHICK_9031 and tr_A0A1V4K9B3_A0A1V4K9B3_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_G1N7K9_G1N7K9_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_K7F7D9_K7F7D9_PELSI_13735 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_H0YSJ2_H0YSJ2_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_U3K056_U3K056_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A0Q3PLU3_A0A0Q3PLU3_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A091ENW8_A0A091ENW8_CORBR_85066 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A091JFG5_A0A091JFG5_EGRGA_188379 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A091V382_A0A091V382_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A087RF12_A0A087RF12_APTFO_9233 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A093HIU3_A0A093HIU3_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A091VWF6_A0A091VWF6_OPIHO_30419 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A099Z082_A0A099Z082_TINGU_94827 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A091FL86_A0A091FL86_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A099ZZ81_A0A099ZZ81_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A093FWU2_A0A093FWU2_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A091I6W7_A0A091I6W7_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A218V374_A0A218V374_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A226MLT9_A0A226MLT9_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q56I99_SMAD5_CHICK_9031 and tr_A0A226P1I0_A0A226P1I0_COLVI_9014 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_M3Y661_M3Y661_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G1R0I1_G1R0I1_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G1PK66_G1PK66_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G3SBY8_G3SBY8_GORGO_9595 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G1KC06_G1KC06_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_E2QZF1_E2QZF1_CANLF_9615 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_H2QQ88_H2QQ88_PANTR_9598 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_F6YA42_F6YA42_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_F6TU68_F6TU68_MONDO_13616 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_F6W0G0_F6W0G0_HORSE_9796 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_W5PH38_W5PH38_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_I3MG69_I3MG69_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_H0WFU8_H0WFU8_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and sp_Q15797_SMAD1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A1D5Q7V1_A0A1D5Q7V1_MACMU_9544 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G3TKL5_G3TKL5_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G3VVZ0_G3VVZ0_SARHA_9305 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_F7ICT9_F7ICT9_CALJA_9483 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A287B855_A0A287B855_PIG_9823 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_D2H3Q3_D2H3Q3_AILME_9646 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_G7P6D2_G7P6D2_MACFA_9541 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and sp_Q1JQA2_SMAD1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_L5L1L9_L5L1L9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_M3W1M8_M3W1M8_FELCA_9685 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A0D9S181_A0A0D9S181_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A151PBL1_A0A151PBL1_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A093I459_A0A093I459_STRCA_441894 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A099ZSV0_A0A099ZSV0_TINGU_94827 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A1U7UBQ1_A0A1U7UBQ1_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A1U7RI03_A0A1U7RI03_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A1U7QNT0_A0A1U7QNT0_MESAU_10036 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2K5NE45_A0A2K5NE45_CERAT_9531 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2K6B401_A0A2K6B401_MACNE_9545 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2K5YVF0_A0A2K5YVF0_MANLE_9568 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2R8ZY67_A0A2R8ZY67_PANPA_9597 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2U4AM99_A0A2U4AM99_TURTR_9739 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2U3WRB8_A0A2U3WRB8_ODORO_9708 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2U3YKB3_A0A2U3YKB3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2Y9RCT7_A0A2Y9RCT7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2Y9K6L2_A0A2Y9K6L2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2Y9QCN4_A0A2Y9QCN4_DELLE_9749 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A2Y9T0I4_A0A2Y9T0I4_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A384BM65_A0A384BM65_URSMA_29073 are exactly identical! WARNING: Sequences sp_P70340_SMAD1_MOUSE_10090 and tr_A0A384AQ00_A0A384AQ00_BALAS_310752 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_M3YEV3_M3YEV3_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G1RAK5_G1RAK5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G1NXK3_G1NXK3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G3RTX4_G3RTX4_GORGO_9595 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and sp_Q5R6H7_SMAD5_PONAB_9601 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G1SMU6_G1SMU6_RABIT_9986 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_E2RCX7_E2RCX7_CANLF_9615 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_K7B6A4_K7B6A4_PANTR_9598 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_F7A120_F7A120_HORSE_9796 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_I3MI02_I3MI02_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_H0X0W6_H0X0W6_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_H0V696_H0V696_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and sp_Q99717_SMAD5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_F6YMS3_F6YMS3_MACMU_9544 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G5BX13_G5BX13_HETGA_10181 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G3SU28_G3SU28_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_U3FCQ3_U3FCQ3_CALJA_9483 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A286ZNF5_A0A286ZNF5_PIG_9823 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_D2GVL2_D2GVL2_AILME_9646 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_G7P8C6_G7P8C6_MACFA_9541 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_F1MD43_F1MD43_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_L5JUU0_L5JUU0_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_M3X9P2_M3X9P2_FELCA_9685 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A096MMR6_A0A096MMR6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A091D8T3_A0A091D8T3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A0D9RLM2_A0A0D9RLM2_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A1S3AD30_A0A1S3AD30_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A1U7TD61_A0A1U7TD61_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2K6DUF7_A0A2K6DUF7_MACNE_9545 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2K5YSA7_A0A2K5YSA7_MANLE_9568 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2R9BFQ2_A0A2R9BFQ2_PANPA_9597 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2U3V5W2_A0A2U3V5W2_TURTR_9739 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2U3WAY5_A0A2U3WAY5_ODORO_9708 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2Y9E278_A0A2Y9E278_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2Y9IK55_A0A2Y9IK55_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2Y9PH18_A0A2Y9PH18_DELLE_9749 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A2Y9SI56_A0A2Y9SI56_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A384C4K2_A0A384C4K2_URSMA_29073 are exactly identical! WARNING: Sequences sp_P97454_SMAD5_MOUSE_10090 and tr_A0A383ZAR7_A0A383ZAR7_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2I3HD56_A0A2I3HD56_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_H2NNK3_H2NNK3_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_F1PSQ3_F1PSQ3_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and sp_P84025_SMAD3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_I3MF72_I3MF72_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_H0XAS3_H0XAS3_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and sp_P84022_SMAD3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_F7I1B6_F7I1B6_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and sp_P84024_SMAD3_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2I2UP85_A0A2I2UP85_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A1S3EP13_A0A1S3EP13_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A1U7QN15_A0A1U7QN15_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2R9AV36_A0A2R9AV36_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2U3WYA5_A0A2U3WYA5_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2Y9DIB4_A0A2Y9DIB4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2Y9K3C9_A0A2Y9K3C9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2Y9NWL7_A0A2Y9NWL7_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A2Y9FQZ8_A0A2Y9FQZ8_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q8BUN5_SMAD3_MOUSE_10090 and tr_A0A383YTC5_A0A383YTC5_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YBJ8_M3YBJ8_MUSPF_9669 and tr_D2H520_D2H520_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YBJ8_M3YBJ8_MUSPF_9669 and tr_A0A2U3WNE2_A0A2U3WNE2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YBJ8_M3YBJ8_MUSPF_9669 and tr_A0A2U3XTK1_A0A2U3XTK1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YBJ8_M3YBJ8_MUSPF_9669 and tr_A0A2Y9ISJ5_A0A2Y9ISJ5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_O96660_O96660_DROME_7227 and tr_B4IKX2_B4IKX2_DROSE_7238 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_A0A2I2ZI57_A0A2I2ZI57_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_H2RCQ5_H2RCQ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and sp_O15198_SMAD9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_F6YCR1_F6YCR1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_G7PW13_G7PW13_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_A0A0D9RZ54_A0A0D9RZ54_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_A0A1U7T7N9_A0A1U7T7N9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_A0A2K5N9T0_A0A2K5N9T0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_A0A2K6CF91_A0A2K6CF91_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QM38_G1QM38_NOMLE_61853 and tr_A0A2R9A3J1_A0A2R9A3J1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_G3RCU6_G3RCU6_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2J8UEM2_A0A2J8UEM2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_G1SKR1_G1SKR1_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_H2QEJ6_H2QEJ6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_F6RZ63_F6RZ63_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_I3MX09_I3MX09_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_H0V7V1_H0V7V1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and sp_Q13485_SMAD4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A1D5QTT6_A0A1D5QTT6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_G5BVT2_G5BVT2_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_G3T9P9_G3T9P9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2R8MAR1_A0A2R8MAR1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_G7PWS9_G7PWS9_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_L5K1M8_L5K1M8_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2I2V1Y5_A0A2I2V1Y5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A096N2U8_A0A096N2U8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A0D9RZS6_A0A0D9RZS6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A1S2Z9H9_A0A1S2Z9H9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2K5NH42_A0A2K5NH42_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2K6BPF5_A0A2K6BPF5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2K5XWF3_A0A2K5XWF3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2R9A0M1_A0A2R9A0M1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RMF1_G1RMF1_NOMLE_61853 and tr_A0A2Y9RDV5_A0A2Y9RDV5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1PNZ0_G1PNZ0_MYOLU_59463 and tr_A0A3Q0CXY2_A0A3Q0CXY2_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3HJ00_G3HJ00_CRIGR_10029 and tr_A0A1U7QPZ5_A0A1U7QPZ5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3R4S9_G3R4S9_GORGO_9595 and tr_A0A2K5ZNF0_A0A2K5ZNF0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R4S9_G3R4S9_GORGO_9595 and tr_A0A2R9AGA7_A0A2R9AGA7_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NWB5_H2NWB5_PONAB_9601 and sp_O15105_SMAD7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NWB5_H2NWB5_PONAB_9601 and tr_A0A096MYP6_A0A096MYP6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2NWB5_H2NWB5_PONAB_9601 and tr_A0A0D9RZK2_A0A0D9RZK2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NWB5_H2NWB5_PONAB_9601 and tr_A0A2K6DA70_A0A2K6DA70_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q29HD9_Q29HD9_DROPS_46245 and tr_B4GXV7_B4GXV7_DROPE_7234 are exactly identical! WARNING: Sequences tr_F7DEG7_F7DEG7_ORNAN_9258 and tr_G3TQF5_G3TQF5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6UAA8_F6UAA8_MONDO_13616 and tr_G3VDS6_G3VDS6_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5P3J1_W5P3J1_SHEEP_9940 and tr_B0JYL0_B0JYL0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P3J1_W5P3J1_SHEEP_9940 and sp_Q1HE26_SMAD4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5PVS1_A0A3B5PVS1_XIPMA_8083 and tr_G3Q4E5_G3Q4E5_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5PVS1_A0A3B5PVS1_XIPMA_8083 and tr_A0A087XIS4_A0A087XIS4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZZ35_A0A087ZZ35_APIME_7460 and tr_A0A0M9A1E6_A0A0M9A1E6_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A087ZZ35_A0A087ZZ35_APIME_7460 and tr_A0A0L7RGI9_A0A0L7RGI9_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZZ35_A0A087ZZ35_APIME_7460 and tr_A0A2A3EFX4_A0A2A3EFX4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NI66_A0A158NI66_ATTCE_12957 and tr_F4WG94_F4WG94_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NI66_A0A158NI66_ATTCE_12957 and tr_A0A195B694_A0A195B694_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NI66_A0A158NI66_ATTCE_12957 and tr_A0A151JXB1_A0A151JXB1_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NI66_A0A158NI66_ATTCE_12957 and tr_A0A151IAL2_A0A151IAL2_9HYME_456900 are exactly identical! WARNING: Sequences tr_H0VDS7_H0VDS7_CAVPO_10141 and tr_G5C7E2_G5C7E2_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0VDS7_H0VDS7_CAVPO_10141 and tr_A0A091CSX6_A0A091CSX6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G5B883_G5B883_HETGA_10181 and tr_A0A2U4BH88_A0A2U4BH88_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A212F0Y7_A0A212F0Y7_DANPL_278856 and tr_A0A0L7LUP4_A0A0L7LUP4_9NEOP_104452 are exactly identical! WARNING: Sequences tr_H0YWT5_H0YWT5_TAEGU_59729 and tr_U3JSK3_U3JSK3_FICAL_59894 are exactly identical! WARNING: Sequences tr_B4M1Z3_B4M1Z3_DROVI_7244 and tr_B4L8H6_B4L8H6_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A3Q0KE84_A0A3Q0KE84_SCHMA_6183 and tr_Q6UEH7_Q6UEH7_SCHMA_6183 are exactly identical! WARNING: Sequences tr_B3RY25_B3RY25_TRIAD_10228 and tr_A0A369SIZ5_A0A369SIZ5_9METZ_287889 are exactly identical! WARNING: Sequences tr_U3K0T6_U3K0T6_FICAL_59894 and tr_A0A091F657_A0A091F657_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3K0T6_U3K0T6_FICAL_59894 and tr_A0A218V6G2_A0A218V6G2_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A044S541_A0A044S541_ONCVO_6282 and tr_A0A182EMM9_A0A182EMM9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A091EX42_A0A091EX42_CORBR_85066 and tr_A0A087QRI5_A0A087QRI5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F6M3_A0A091F6M3_CORBR_85066 and tr_A0A091FNY3_A0A091FNY3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091F6M3_A0A091F6M3_CORBR_85066 and tr_A0A1V4JUP8_A0A1V4JUP8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091J208_A0A091J208_EGRGA_188379 and tr_A0A091WLW2_A0A091WLW2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J208_A0A091J208_EGRGA_188379 and tr_A0A091GIU2_A0A091GIU2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J208_A0A091J208_EGRGA_188379 and tr_A0A0A0A0V8_A0A0A0A0V8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JRQ0_A0A091JRQ0_EGRGA_188379 and tr_A0A093QLM1_A0A093QLM1_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JRQ0_A0A091JRQ0_EGRGA_188379 and tr_A0A087R0D3_A0A087R0D3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JRQ0_A0A091JRQ0_EGRGA_188379 and tr_A0A091XSV6_A0A091XSV6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A194QPE8_A0A194QPE8_PAPMA_76193 and tr_A0A194QIX4_A0A194QIX4_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093H1K9_A0A093H1K9_STRCA_441894 and tr_A0A099ZGM6_A0A099ZGM6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2I0MAB5_A0A2I0MAB5_COLLI_8932 and tr_A0A1V4KUQ2_A0A1V4KUQ2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RLR6_A0A0V0RLR6_9BILA_6336 and tr_A0A0V0X8M8_A0A0V0X8M8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RLR6_A0A0V0RLR6_9BILA_6336 and tr_A0A0V0VTJ4_A0A0V0VTJ4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RLR6_A0A0V0RLR6_9BILA_6336 and tr_A0A0V1LSP4_A0A0V1LSP4_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RLR6_A0A0V0RLR6_9BILA_6336 and tr_A0A0V1A1H3_A0A0V1A1H3_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RLR6_A0A0V0RLR6_9BILA_6336 and tr_A0A0V1NQ88_A0A0V1NQ88_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RLR6_A0A0V0RLR6_9BILA_6336 and tr_A0A0V0TVR7_A0A0V0TVR7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1ME55_A0A0V1ME55_9BILA_268474 and tr_A0A0V1HB83_A0A0V1HB83_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151J4K9_A0A151J4K9_9HYME_471704 and tr_A0A151JWE9_A0A151JWE9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3K891_A0A1S3K891_LINUN_7574 and tr_A0A1S3K8S6_A0A1S3K8S6_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3RWE4_A0A1S3RWE4_SALSA_8030 and tr_C0H9Q9_C0H9Q9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3SWQ5_A0A1S3SWQ5_SALSA_8030 and tr_B5X4J3_B5X4J3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A226MF71_A0A226MF71_CALSU_9009 and tr_A0A226P2D7_A0A226P2D7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MUT9_A0A226MUT9_CALSU_9009 and tr_A0A226NZZ5_A0A226NZZ5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NNN1_A0A226NNN1_CALSU_9009 and tr_A0A226PDV4_A0A226PDV4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SMR4_A0A2D0SMR4_ICTPU_7998 and tr_A0A2D0SNB9_A0A2D0SNB9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR30_A0A2D0SR30_ICTPU_7998 and tr_W5U628_W5U628_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4BGU5_A0A2U4BGU5_TURTR_9739 and tr_A0A2Y9N811_A0A2Y9N811_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BHD1_A0A2U4BHD1_TURTR_9739 and tr_A0A2Y9NZ77_A0A2Y9NZ77_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BHD1_A0A2U4BHD1_TURTR_9739 and tr_A0A2Y9EKH2_A0A2Y9EKH2_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 232 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541.raxml.reduced.phy Alignment comprises 1 partitions and 496 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 496 Gaps: 42.33 % Invariant sites: 0.20 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/3_mltree/O43541.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 124 / 9920 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -138088.884664 [00:00:00 -138088.884664] Initial branch length optimization [00:00:01 -98700.176529] Model parameter optimization (eps = 0.100000) [00:00:37] Tree #1, final logLikelihood: -98375.433980 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.120597,0.209146) (0.111088,0.262087) (0.311721,0.574314) (0.456595,1.679032) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/O43541/4_raxmlng_ancestral/O43541.raxml.log Analysis started: 04-Jun-2021 13:55:37 / finished: 04-Jun-2021 13:56:19 Elapsed time: 42.340 seconds