RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 06-Jul-2021 20:58:00 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/2_msa/O43345_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/2_msa/O43345_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 501 sites

WARNING: Sequences tr_M3XQ54_M3XQ54_MUSPF_9669 and tr_A0A2Y9IGF5_A0A2Y9IGF5_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G3SCJ9_G3SCJ9_GORGO_9595 and tr_A0A2J8Q7D1_A0A2J8Q7D1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SCJ9_G3SCJ9_GORGO_9595 and sp_Q9HCG1_ZN160_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2R535_H2R535_PANTR_9598 and tr_A0A2R9C791_A0A2R9C791_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5QC17_A0A1D5QC17_MACMU_9544 and tr_A0A2K6BUH3_A0A2K6BUH3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5QCB8_A0A1D5QCB8_MACMU_9544 and tr_G7P743_G7P743_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5QCB8_A0A1D5QCB8_MACMU_9544 and tr_A0A096N6B2_A0A096N6B2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5QCB8_A0A1D5QCB8_MACMU_9544 and tr_A0A0D9R6S1_A0A0D9R6S1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5QCB8_A0A1D5QCB8_MACMU_9544 and tr_A0A2K6AWJ5_A0A2K6AWJ5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5QCB8_A0A1D5QCB8_MACMU_9544 and tr_A0A2K5XH95_A0A2K5XH95_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6PVJ2_F6PVJ2_MACMU_9544 and tr_A0A0A0MUN7_A0A0A0MUN7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6PVJ2_F6PVJ2_MACMU_9544 and tr_A0A2K5MSN2_A0A2K5MSN2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6PVJ2_F6PVJ2_MACMU_9544 and tr_A0A2K6E5U8_A0A2K6E5U8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6UR85_F6UR85_MACMU_9544 and tr_A0A2K5KZW5_A0A2K5KZW5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6UR85_F6UR85_MACMU_9544 and tr_A0A2K6ADH3_A0A2K6ADH3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6UUJ3_F6UUJ3_MACMU_9544 and tr_A0A2K6DEZ7_A0A2K6DEZ7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1M8Y9_G1M8Y9_AILME_9646 and tr_A0A384BHB3_A0A384BHB3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A0A0MW33_A0A0A0MW33_PAPAN_9555 and tr_A0A2K5ZEU7_A0A2K5ZEU7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5LMS6_A0A2K5LMS6_CERAT_9531 and tr_A0A2K5YZS4_A0A2K5YZS4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U4CMQ1_A0A2U4CMQ1_TURTR_9739 and tr_A0A2Y9LX85_A0A2Y9LX85_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4CMQ1_A0A2U4CMQ1_TURTR_9739 and tr_A0A2Y9EF59_A0A2Y9EF59_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4CMQ1_A0A2U4CMQ1_TURTR_9739 and tr_A0A383ZFA2_A0A383ZFA2_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 22

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.reduced.phy

Alignment comprises 1 partitions and 501 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 501 / 501
Gaps: 8.54 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.rba

Parallelization scheme autoconfig: 3 worker(s) x 2 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 251 / 20080
[00:00:00] Data distribution: max. searches per worker: 7

Starting ML tree search with 20 distinct starting trees

[00:00:00 -721927.049156] Initial branch length optimization
[00:00:09 -642772.004711] Model parameter optimization (eps = 10.000000)
[00:01:21 -641412.865909] AUTODETECT spr round 1 (radius: 5)
[00:04:44 -562756.994145] AUTODETECT spr round 2 (radius: 10)
[00:08:48 -471158.078536] AUTODETECT spr round 3 (radius: 15)
[00:12:58 -423773.132206] AUTODETECT spr round 4 (radius: 20)
[00:18:29 -405776.358474] AUTODETECT spr round 5 (radius: 25)
[00:23:55 -403262.906957] SPR radius for FAST iterations: 25 (autodetect)
[00:23:55 -403262.906957] Model parameter optimization (eps = 3.000000)
[00:24:30 -402985.317643] FAST spr round 1 (radius: 25)
[00:33:07 -369403.227768] FAST spr round 2 (radius: 25)
[00:40:48 -366617.894514] FAST spr round 3 (radius: 25)
[00:47:00 -366355.243404] FAST spr round 4 (radius: 25)
[00:52:24 -366303.354697] FAST spr round 5 (radius: 25)
[00:56:47 -366288.617014] FAST spr round 6 (radius: 25)
[01:00:23 -366288.616928] Model parameter optimization (eps = 1.000000)
[01:00:42 -366282.261981] SLOW spr round 1 (radius: 5)
[01:07:00 -366149.378287] SLOW spr round 2 (radius: 5)
[01:12:48 -366121.169528] SLOW spr round 3 (radius: 5)
[01:18:37 -366111.556535] SLOW spr round 4 (radius: 5)
[01:23:58 -366111.188533] SLOW spr round 5 (radius: 5)
[01:29:00 -366111.188517] SLOW spr round 6 (radius: 10)
[01:34:40 -366095.062580] SLOW spr round 7 (radius: 5)
[01:41:45 -366059.303257] SLOW spr round 8 (radius: 5)
[01:47:53 -366043.223427] SLOW spr round 9 (radius: 5)
[01:53:09 -366040.452709] SLOW spr round 10 (radius: 5)
[01:58:19 -366040.451802] SLOW spr round 11 (radius: 10)
[02:04:03 -366038.191803] SLOW spr round 12 (radius: 5)
[02:10:35 -366027.410175] SLOW spr round 13 (radius: 5)
[02:16:09 -366027.409602] SLOW spr round 14 (radius: 10)
[02:22:16 -366026.932138] SLOW spr round 15 (radius: 5)
[02:28:53 -366016.889886] SLOW spr round 16 (radius: 5)
[02:34:33 -366014.527792] SLOW spr round 17 (radius: 5)
[02:39:48 -366013.945036] SLOW spr round 18 (radius: 5)
[02:45:01 -366013.944117] SLOW spr round 19 (radius: 10)
[02:50:55 -366013.793265] SLOW spr round 20 (radius: 5)
[02:57:17 -366010.980542] SLOW spr round 21 (radius: 5)
[03:02:52 -366010.979898] SLOW spr round 22 (radius: 10)
[03:09:09 -366007.838207] SLOW spr round 23 (radius: 5)
[03:15:21 -366005.805453] SLOW spr round 24 (radius: 5)
[03:20:46 -366005.805438] SLOW spr round 25 (radius: 10)
[03:26:47 -366005.805435] SLOW spr round 26 (radius: 15)
[03:40:25 -365998.524461] SLOW spr round 27 (radius: 5)
[03:47:03 -365996.777436] SLOW spr round 28 (radius: 5)
[03:52:35 -365996.777378] SLOW spr round 29 (radius: 10)
[03:58:42 -365996.777375] SLOW spr round 30 (radius: 15)
[04:12:05 -365996.777372] SLOW spr round 31 (radius: 20)
[04:34:30 -365995.329793] SLOW spr round 32 (radius: 5)
[04:41:26 -365496.383694] SLOW spr round 33 (radius: 5)
[04:47:12 -365496.383546] SLOW spr round 34 (radius: 10)
[04:53:34 -365496.383542] SLOW spr round 35 (radius: 15)
[05:07:14 -365496.383539] SLOW spr round 36 (radius: 20)
[05:29:04 -365496.383537] SLOW spr round 37 (radius: 25)
[05:54:24 -365142.417235] SLOW spr round 38 (radius: 5)
[06:01:04 -365133.519375] SLOW spr round 39 (radius: 5)
[06:06:36 -365133.519360] SLOW spr round 40 (radius: 10)
[06:12:45 -365133.519357] SLOW spr round 41 (radius: 15)
[06:13:41] [worker #2] ML tree search #3, logLikelihood: -365020.739883
[06:25:43 -365133.519355] SLOW spr round 42 (radius: 20)
[06:46:48 -365133.519352] SLOW spr round 43 (radius: 25)
[06:47:40] [worker #1] ML tree search #2, logLikelihood: -364872.346709
[07:11:34 -365133.519350] Model parameter optimization (eps = 0.100000)

[07:11:46] [worker #0] ML tree search #1, logLikelihood: -365133.414060

[07:11:46 -722363.005431] Initial branch length optimization
[07:11:52 -641559.780810] Model parameter optimization (eps = 10.000000)
[07:12:40 -640196.834826] AUTODETECT spr round 1 (radius: 5)
[07:15:57 -564151.582448] AUTODETECT spr round 2 (radius: 10)
[07:19:46 -472878.095881] AUTODETECT spr round 3 (radius: 15)
[07:23:39 -421817.833921] AUTODETECT spr round 4 (radius: 20)
[07:28:52 -404694.092138] AUTODETECT spr round 5 (radius: 25)
[07:33:46 -399899.163881] SPR radius for FAST iterations: 25 (autodetect)
[07:33:46 -399899.163881] Model parameter optimization (eps = 3.000000)
[07:33:57 -399883.425944] FAST spr round 1 (radius: 25)
[07:42:14 -369466.164519] FAST spr round 2 (radius: 25)
[07:49:16 -367634.294354] FAST spr round 3 (radius: 25)
[07:55:06 -366905.216721] FAST spr round 4 (radius: 25)
[08:00:18 -366802.868174] FAST spr round 5 (radius: 25)
[08:04:29 -366762.004121] FAST spr round 6 (radius: 25)
[08:08:04 -366750.042646] FAST spr round 7 (radius: 25)
[08:11:22 -366750.042414] Model parameter optimization (eps = 1.000000)
[08:11:49 -366484.059395] SLOW spr round 1 (radius: 5)
[08:17:54 -366356.086717] SLOW spr round 2 (radius: 5)
[08:23:31 -366330.213265] SLOW spr round 3 (radius: 5)
[08:28:49 -366321.902022] SLOW spr round 4 (radius: 5)
[08:33:43 -366321.369700] SLOW spr round 5 (radius: 5)
[08:38:32 -366321.369695] SLOW spr round 6 (radius: 10)
[08:44:25 -366298.478200] SLOW spr round 7 (radius: 5)
[08:50:59 -366291.817856] SLOW spr round 8 (radius: 5)
[08:56:52 -366277.857000] SLOW spr round 9 (radius: 5)
[09:02:12 -366275.294267] SLOW spr round 10 (radius: 5)
[09:07:22 -366275.187994] SLOW spr round 11 (radius: 5)
[09:12:30 -366275.187990] SLOW spr round 12 (radius: 10)
[09:18:14 -366274.261196] SLOW spr round 13 (radius: 5)
[09:24:38 -366273.722169] SLOW spr round 14 (radius: 5)
[09:30:11 -366273.721840] SLOW spr round 15 (radius: 10)
[09:36:13 -366273.721822] SLOW spr round 16 (radius: 15)
[09:49:29 -366273.721820] SLOW spr round 17 (radius: 20)
[10:03:51] [worker #2] ML tree search #6, logLikelihood: -364900.173582
[10:08:56 -366273.721820] SLOW spr round 18 (radius: 25)
[10:32:36 -366273.721820] Model parameter optimization (eps = 0.100000)

[10:32:47] [worker #0] ML tree search #4, logLikelihood: -366273.582029

[10:32:47 -723192.859884] Initial branch length optimization
[10:32:53 -642751.411684] Model parameter optimization (eps = 10.000000)
[10:33:37 -641587.826798] AUTODETECT spr round 1 (radius: 5)
[10:36:49 -566711.383604] AUTODETECT spr round 2 (radius: 10)
[10:40:40 -477042.910315] AUTODETECT spr round 3 (radius: 15)
[10:44:40 -419638.759430] AUTODETECT spr round 4 (radius: 20)
[10:49:45 -405007.056695] AUTODETECT spr round 5 (radius: 25)
[10:55:33 -396853.079294] SPR radius for FAST iterations: 25 (autodetect)
[10:55:33 -396853.079294] Model parameter optimization (eps = 3.000000)
[10:56:08 -396607.332726] FAST spr round 1 (radius: 25)
[11:05:17 -368420.345196] FAST spr round 2 (radius: 25)
[11:12:59 -367196.093799] FAST spr round 3 (radius: 25)
[11:19:08 -366549.821247] FAST spr round 4 (radius: 25)
[11:24:19 -366448.603916] FAST spr round 5 (radius: 25)
[11:28:46 -366089.374724] FAST spr round 6 (radius: 25)
[11:32:43 -366078.741809] FAST spr round 7 (radius: 25)
[11:36:18 -366070.685904] FAST spr round 8 (radius: 25)
[11:39:35 -366070.685860] Model parameter optimization (eps = 1.000000)
[11:39:49 -366067.372537] SLOW spr round 1 (radius: 5)
[11:45:37 -365945.734749] SLOW spr round 2 (radius: 5)
[11:51:19 -365919.387250] SLOW spr round 3 (radius: 5)
[11:56:47 -365909.051597] SLOW spr round 4 (radius: 5)
[12:02:01 -365907.099757] SLOW spr round 5 (radius: 5)
[12:07:00 -365907.099287] SLOW spr round 6 (radius: 10)
[12:12:46 -365896.888404] SLOW spr round 7 (radius: 5)
[12:19:06 -365881.272223] SLOW spr round 8 (radius: 5)
[12:24:35 -365880.755614] SLOW spr round 9 (radius: 5)
[12:29:45 -365880.205709] SLOW spr round 10 (radius: 5)
[12:34:48 -365880.066759] SLOW spr round 11 (radius: 5)
[12:39:47 -365880.066757] SLOW spr round 12 (radius: 10)
[12:45:30 -365878.687906] SLOW spr round 13 (radius: 5)
[12:51:44 -365878.224420] SLOW spr round 14 (radius: 5)
[12:57:17 -365877.651982] SLOW spr round 15 (radius: 5)
[13:02:39 -365877.651757] SLOW spr round 16 (radius: 10)
[13:08:51 -365875.438991] SLOW spr round 17 (radius: 5)
[13:15:28 -365872.739173] SLOW spr round 18 (radius: 5)
[13:21:12 -365872.739066] SLOW spr round 19 (radius: 10)
[13:27:38 -365872.254204] SLOW spr round 20 (radius: 5)
[13:34:15 -365869.107270] SLOW spr round 21 (radius: 5)
[13:39:59 -365869.107146] SLOW spr round 22 (radius: 10)
[13:46:29 -365868.855811] SLOW spr round 23 (radius: 5)
[13:53:01 -365868.597559] SLOW spr round 24 (radius: 5)
[13:58:45 -365868.597546] SLOW spr round 25 (radius: 10)
[14:05:14 -365868.597546] SLOW spr round 26 (radius: 15)
[14:19:06 -365868.597546] SLOW spr round 27 (radius: 20)
[14:40:56 -365860.063178] SLOW spr round 28 (radius: 5)
[14:48:23 -365855.939660] SLOW spr round 29 (radius: 5)
[14:54:23 -365855.939525] SLOW spr round 30 (radius: 10)
[15:01:10 -365855.939518] SLOW spr round 31 (radius: 15)
[15:14:51 -365855.939517] SLOW spr round 32 (radius: 20)
[15:36:44 -365855.939517] SLOW spr round 33 (radius: 25)
[16:01:38 -365712.287347] SLOW spr round 34 (radius: 5)
[16:09:13 -365339.503243] SLOW spr round 35 (radius: 5)
[16:15:46 -365187.265278] SLOW spr round 36 (radius: 5)
[16:21:39 -365045.880904] SLOW spr round 37 (radius: 5)
[16:27:06 -365035.687259] SLOW spr round 38 (radius: 5)
[16:32:17 -365035.687196] SLOW spr round 39 (radius: 10)
[16:38:19 -365031.111363] SLOW spr round 40 (radius: 5)
[16:45:08 -365012.069885] SLOW spr round 41 (radius: 5)
[16:50:53 -365008.729714] SLOW spr round 42 (radius: 5)
[16:56:20 -365007.175639] SLOW spr round 43 (radius: 5)
[17:02:30 -365006.725872] SLOW spr round 44 (radius: 5)
[17:08:31 -365006.725813] SLOW spr round 45 (radius: 10)
[17:15:28 -365002.388863] SLOW spr round 46 (radius: 5)
[17:23:06 -365000.757006] SLOW spr round 47 (radius: 5)
[17:29:54 -365000.756824] SLOW spr round 48 (radius: 10)
[17:37:25 -365000.740370] SLOW spr round 49 (radius: 15)
[17:53:03 -365000.740299] SLOW spr round 50 (radius: 20)
[18:17:43 -364989.449968] SLOW spr round 51 (radius: 5)
[18:25:58 -364989.449570] SLOW spr round 52 (radius: 10)
[18:35:17 -364978.502153] SLOW spr round 53 (radius: 5)
[18:43:01 -364955.436828] SLOW spr round 54 (radius: 5)
[18:49:26 -364954.658862] SLOW spr round 55 (radius: 5)
[18:55:29 -364954.125186] SLOW spr round 56 (radius: 5)
[19:01:27 -364953.045787] SLOW spr round 57 (radius: 5)
[19:07:16 -364953.045729] SLOW spr round 58 (radius: 10)
[19:13:50 -364952.318176] SLOW spr round 59 (radius: 5)
[19:21:00 -364952.317898] SLOW spr round 60 (radius: 10)
[19:28:51 -364952.317850] SLOW spr round 61 (radius: 15)
[19:42:52 -364952.317811] SLOW spr round 62 (radius: 20)
[19:59:49] [worker #2] ML tree search #9, logLikelihood: -365038.261550
[20:05:45 -364952.317773] SLOW spr round 63 (radius: 25)
[20:05:49] [worker #1] ML tree search #5, logLikelihood: -364849.085447
[20:32:19 -364952.317734] Model parameter optimization (eps = 0.100000)

[20:32:36] [worker #0] ML tree search #7, logLikelihood: -364952.047292

[20:32:36 -722263.863650] Initial branch length optimization
[20:32:44 -642508.206346] Model parameter optimization (eps = 10.000000)
[20:33:35 -641243.719630] AUTODETECT spr round 1 (radius: 5)
[20:37:23 -559496.318029] AUTODETECT spr round 2 (radius: 10)
[20:41:44 -473650.158578] AUTODETECT spr round 3 (radius: 15)
[20:46:33 -415943.292836] AUTODETECT spr round 4 (radius: 20)
[20:52:14 -401054.781402] AUTODETECT spr round 5 (radius: 25)
[20:57:59 -397444.487125] SPR radius for FAST iterations: 25 (autodetect)
[20:57:59 -397444.487125] Model parameter optimization (eps = 3.000000)
[20:58:41 -397184.555446] FAST spr round 1 (radius: 25)
[21:07:56 -368143.040589] FAST spr round 2 (radius: 25)
[21:16:49 -366498.532982] FAST spr round 3 (radius: 25)
[21:23:45 -366085.372247] FAST spr round 4 (radius: 25)
[21:29:18 -366055.556529] FAST spr round 5 (radius: 25)
[21:34:03 -366046.740507] FAST spr round 6 (radius: 25)
[21:38:14 -366046.244933] FAST spr round 7 (radius: 25)
[21:42:10 -366046.244769] Model parameter optimization (eps = 1.000000)
[21:42:28 -366043.963140] SLOW spr round 1 (radius: 5)
[21:49:26 -365868.301633] SLOW spr round 2 (radius: 5)
[21:56:06 -365829.482893] SLOW spr round 3 (radius: 5)
[22:02:19 -365826.650577] SLOW spr round 4 (radius: 5)
[22:08:19 -365826.184792] SLOW spr round 5 (radius: 5)
[22:14:14 -365826.184714] SLOW spr round 6 (radius: 10)
[22:21:22 -365793.158837] SLOW spr round 7 (radius: 5)
[22:28:58 -365767.470185] SLOW spr round 8 (radius: 5)
[22:35:27 -365767.320626] SLOW spr round 9 (radius: 5)
[22:41:32 -365767.320611] SLOW spr round 10 (radius: 10)
[22:48:29 -365762.304664] SLOW spr round 11 (radius: 5)
[22:55:56 -365753.294638] SLOW spr round 12 (radius: 5)
[23:02:23 -365752.997855] SLOW spr round 13 (radius: 5)
[23:08:28 -365752.997837] SLOW spr round 14 (radius: 10)
[23:15:18 -365751.831730] SLOW spr round 15 (radius: 5)
[23:22:49 -365744.839670] SLOW spr round 16 (radius: 5)
[23:29:15 -365744.696753] SLOW spr round 17 (radius: 5)
[23:35:19 -365744.696751] SLOW spr round 18 (radius: 10)
[23:42:07 -365741.794541] SLOW spr round 19 (radius: 5)
[23:49:32 -365737.254732] SLOW spr round 20 (radius: 5)
[23:56:03 -365737.254719] SLOW spr round 21 (radius: 10)
[24:03:26 -365730.705365] SLOW spr round 22 (radius: 5)
[24:11:04 -365718.104283] SLOW spr round 23 (radius: 5)
[24:17:33 -365717.700295] SLOW spr round 24 (radius: 5)
[24:23:56 -365709.194308] SLOW spr round 25 (radius: 5)
[24:29:55 -365709.191608] SLOW spr round 26 (radius: 10)
[24:36:42 -365706.581332] SLOW spr round 27 (radius: 5)
[24:44:02 -365704.919933] SLOW spr round 28 (radius: 5)
[24:50:29 -365704.828320] SLOW spr round 29 (radius: 10)
[24:57:33 -365704.828209] SLOW spr round 30 (radius: 15)
[25:12:32 -365702.785645] SLOW spr round 31 (radius: 5)
[25:20:12 -365697.528137] SLOW spr round 32 (radius: 5)
[25:26:46 -365697.528127] SLOW spr round 33 (radius: 10)
[25:34:00 -365697.528127] SLOW spr round 34 (radius: 15)
[25:48:45 -365697.306076] SLOW spr round 35 (radius: 5)
[25:56:22 -365697.306023] SLOW spr round 36 (radius: 10)
[26:04:56 -365697.306022] SLOW spr round 37 (radius: 15)
[26:19:00 -365697.306022] SLOW spr round 38 (radius: 20)
[26:43:54 -365647.264310] SLOW spr round 39 (radius: 5)
[26:52:04 -365486.909491] SLOW spr round 40 (radius: 5)
[26:59:19 -365349.223816] SLOW spr round 41 (radius: 5)
[27:01:05] [worker #1] ML tree search #8, logLikelihood: -364886.790752
[27:05:32 -365348.729514] SLOW spr round 42 (radius: 5)
[27:11:26 -365348.729393] SLOW spr round 43 (radius: 10)
[27:18:01 -365345.912686] SLOW spr round 44 (radius: 5)
[27:25:18 -365345.616262] SLOW spr round 45 (radius: 5)
[27:31:37 -365345.616252] SLOW spr round 46 (radius: 10)
[27:38:28 -365345.616252] SLOW spr round 47 (radius: 15)
[27:53:08 -365345.616252] SLOW spr round 48 (radius: 20)
[28:16:33 -365345.616252] SLOW spr round 49 (radius: 25)
[28:44:53 -365337.413485] SLOW spr round 50 (radius: 5)
[28:53:07 -365330.925182] SLOW spr round 51 (radius: 5)
[28:59:43 -365327.464873] SLOW spr round 52 (radius: 5)
[29:05:49 -365327.464837] SLOW spr round 53 (radius: 10)
[29:12:31 -365324.657100] SLOW spr round 54 (radius: 5)
[29:19:42 -365322.405776] SLOW spr round 55 (radius: 5)
[29:26:02 -365322.405754] SLOW spr round 56 (radius: 10)
[29:32:52 -365322.405754] SLOW spr round 57 (radius: 15)
[29:47:36 -365322.405754] SLOW spr round 58 (radius: 20)
[30:11:13 -365322.405754] SLOW spr round 59 (radius: 25)
[30:39:59 -365319.444728] SLOW spr round 60 (radius: 5)
[30:48:15 -365319.444694] SLOW spr round 61 (radius: 10)
[30:57:37 -365319.444694] SLOW spr round 62 (radius: 15)
[31:12:13 -365319.444694] SLOW spr round 63 (radius: 20)
[31:37:49 -365319.444694] SLOW spr round 64 (radius: 25)
[32:07:28 -365319.444694] Model parameter optimization (eps = 0.100000)

[32:07:38] [worker #0] ML tree search #10, logLikelihood: -365319.359974

[32:07:38 -723294.848934] Initial branch length optimization
[32:07:47 -642734.800362] Model parameter optimization (eps = 10.000000)
[32:08:40 -641387.796850] AUTODETECT spr round 1 (radius: 5)
[32:12:41 -564565.097253] AUTODETECT spr round 2 (radius: 10)
[32:17:48 -457465.211767] AUTODETECT spr round 3 (radius: 15)
[32:22:59 -417373.939550] AUTODETECT spr round 4 (radius: 20)
[32:29:38 -400991.753378] AUTODETECT spr round 5 (radius: 25)
[32:35:53 -396880.918643] SPR radius for FAST iterations: 25 (autodetect)
[32:35:53 -396880.918643] Model parameter optimization (eps = 3.000000)
[32:36:28 -396570.747630] FAST spr round 1 (radius: 25)
[32:46:43 -370089.413592] FAST spr round 2 (radius: 25)
[32:55:45 -367243.655218] FAST spr round 3 (radius: 25)
[33:03:50 -365812.963952] FAST spr round 4 (radius: 25)
[33:10:32 -365670.321219] FAST spr round 5 (radius: 25)
[33:16:25 -365280.009979] FAST spr round 6 (radius: 25)
[33:21:20 -365259.884131] FAST spr round 7 (radius: 25)
[33:25:46 -365257.882113] FAST spr round 8 (radius: 25)
[33:29:57 -365257.881849] Model parameter optimization (eps = 1.000000)
[33:30:21 -365244.575302] SLOW spr round 1 (radius: 5)
[33:37:45 -365108.419966] SLOW spr round 2 (radius: 5)
[33:44:46 -365075.357178] SLOW spr round 3 (radius: 5)
[33:51:03 -365074.616998] SLOW spr round 4 (radius: 5)
[33:57:11 -365074.616815] SLOW spr round 5 (radius: 10)
[34:04:12 -365067.821383] SLOW spr round 6 (radius: 5)
[34:11:34] [worker #1] ML tree search #11, logLikelihood: -364880.441163
[34:11:59 -365055.118383] SLOW spr round 7 (radius: 5)
[34:18:49 -365053.792132] SLOW spr round 8 (radius: 5)
[34:25:11 -365053.792064] SLOW spr round 9 (radius: 10)
[34:32:28 -365049.338472] SLOW spr round 10 (radius: 5)
[34:40:08 -365048.093159] SLOW spr round 11 (radius: 5)
[34:46:54 -365048.093111] SLOW spr round 12 (radius: 10)
[34:54:22 -365045.963684] SLOW spr round 13 (radius: 5)
[35:02:01 -365044.330070] SLOW spr round 14 (radius: 5)
[35:08:43 -365044.329912] SLOW spr round 15 (radius: 10)
[35:16:14 -365043.511135] SLOW spr round 16 (radius: 5)
[35:23:46 -365043.510730] SLOW spr round 17 (radius: 10)
[35:32:06 -365043.510730] SLOW spr round 18 (radius: 15)
[35:46:40 -365042.877786] SLOW spr round 19 (radius: 5)
[35:54:39 -365041.279332] SLOW spr round 20 (radius: 5)
[36:01:29 -365041.279231] SLOW spr round 21 (radius: 10)
[36:09:06 -365040.849123] SLOW spr round 22 (radius: 5)
[36:16:48 -365038.630825] SLOW spr round 23 (radius: 5)
[36:23:28 -365038.630811] SLOW spr round 24 (radius: 10)
[36:30:55 -365038.630811] SLOW spr round 25 (radius: 15)
[36:46:13 -365038.630811] SLOW spr round 26 (radius: 20)
[37:10:39 -365038.630811] SLOW spr round 27 (radius: 25)
[37:40:56 -365038.630811] Model parameter optimization (eps = 0.100000)

[37:41:10] [worker #0] ML tree search #13, logLikelihood: -365038.526369

[37:41:11 -723274.642825] Initial branch length optimization
[37:41:18 -643181.534940] Model parameter optimization (eps = 10.000000)
[37:42:07 -641965.076363] AUTODETECT spr round 1 (radius: 5)
[37:46:12 -563066.702619] AUTODETECT spr round 2 (radius: 10)
[37:51:21 -469236.436539] AUTODETECT spr round 3 (radius: 15)
[37:56:35 -421334.034678] AUTODETECT spr round 4 (radius: 20)
[38:03:04 -405233.521763] AUTODETECT spr round 5 (radius: 25)
[38:09:09 -401936.629171] SPR radius for FAST iterations: 25 (autodetect)
[38:09:09 -401936.629171] Model parameter optimization (eps = 3.000000)
[38:09:40 -401671.028537] FAST spr round 1 (radius: 25)
[38:19:56 -369206.115924] FAST spr round 2 (radius: 25)
[38:29:33 -366538.892545] FAST spr round 3 (radius: 25)
[38:36:58 -366130.483655] FAST spr round 4 (radius: 25)
[38:43:07 -366065.948218] FAST spr round 5 (radius: 25)
[38:48:28 -365876.066526] FAST spr round 6 (radius: 25)
[38:53:08 -365870.876148] FAST spr round 7 (radius: 25)
[38:57:23 -365870.876004] Model parameter optimization (eps = 1.000000)
[38:57:48 -365868.555203] SLOW spr round 1 (radius: 5)
[39:05:08 -365750.224520] SLOW spr round 2 (radius: 5)
[39:12:17 -365714.308473] SLOW spr round 3 (radius: 5)
[39:19:18 -365704.855732] SLOW spr round 4 (radius: 5)
[39:25:52 -365703.778639] SLOW spr round 5 (radius: 5)
[39:32:17 -365703.778623] SLOW spr round 6 (radius: 10)
[39:39:41 -365673.807805] SLOW spr round 7 (radius: 5)
[39:48:02 -365659.891034] SLOW spr round 8 (radius: 5)
[39:55:24 -365656.619846] SLOW spr round 9 (radius: 5)
[40:02:07 -365656.619767] SLOW spr round 10 (radius: 10)
[40:09:47 -365649.910978] SLOW spr round 11 (radius: 5)
[40:14:07] [worker #2] ML tree search #12, logLikelihood: -364913.916661
[40:17:48 -365649.741167] SLOW spr round 12 (radius: 5)
[40:24:51 -365649.741022] SLOW spr round 13 (radius: 10)
[40:32:46 -365647.851042] SLOW spr round 14 (radius: 5)
[40:40:44 -365647.573965] SLOW spr round 15 (radius: 5)
[40:47:46 -365647.573943] SLOW spr round 16 (radius: 10)
[40:55:42 -365647.373501] SLOW spr round 17 (radius: 5)
[41:03:55 -365636.559494] SLOW spr round 18 (radius: 5)
[41:11:00 -365636.559378] SLOW spr round 19 (radius: 10)
[41:18:53 -365636.559378] SLOW spr round 20 (radius: 15)
[41:34:46 -365629.591487] SLOW spr round 21 (radius: 5)
[41:43:23 -365620.214840] SLOW spr round 22 (radius: 5)
[41:50:46 -365616.880162] SLOW spr round 23 (radius: 5)
[41:57:29 -365616.880144] SLOW spr round 24 (radius: 10)
[42:05:05 -365615.491558] SLOW spr round 25 (radius: 5)
[42:13:11 -365610.473898] SLOW spr round 26 (radius: 5)
[42:20:25 -365609.465377] SLOW spr round 27 (radius: 5)
[42:27:08 -365608.277953] SLOW spr round 28 (radius: 5)
[42:33:37 -365608.277754] SLOW spr round 29 (radius: 10)
[42:40:57 -365606.418018] SLOW spr round 30 (radius: 5)
[42:49:10 -365598.400661] SLOW spr round 31 (radius: 5)
[42:56:26 -365594.085071] SLOW spr round 32 (radius: 5)
[43:03:05 -365594.084856] SLOW spr round 33 (radius: 10)
[43:10:31 -365592.954309] SLOW spr round 34 (radius: 5)
[43:18:27 -365592.954196] SLOW spr round 35 (radius: 10)
[43:27:08 -365592.954147] SLOW spr round 36 (radius: 15)
[43:41:46 -365592.954099] SLOW spr round 37 (radius: 20)
[44:04:15 -365592.954051] SLOW spr round 38 (radius: 25)
[44:30:29 -365592.954003] Model parameter optimization (eps = 0.100000)

[44:30:47] [worker #0] ML tree search #16, logLikelihood: -365591.688570

[44:30:47 -720396.574703] Initial branch length optimization
[44:30:55 -641052.672720] Model parameter optimization (eps = 10.000000)
[44:31:53 -639695.414684] AUTODETECT spr round 1 (radius: 5)
[44:35:59 -557910.658971] AUTODETECT spr round 2 (radius: 10)
[44:36:29] [worker #1] ML tree search #14, logLikelihood: -364985.819890
[44:40:52 -466741.739724] AUTODETECT spr round 3 (radius: 15)
[44:45:57 -420409.069993] AUTODETECT spr round 4 (radius: 20)
[44:52:36 -406165.210379] AUTODETECT spr round 5 (radius: 25)
[44:59:23 -403211.662444] SPR radius for FAST iterations: 25 (autodetect)
[44:59:23 -403211.662444] Model parameter optimization (eps = 3.000000)
[45:00:02 -402960.732769] FAST spr round 1 (radius: 25)
[45:10:02 -370800.354616] FAST spr round 2 (radius: 25)
[45:19:21 -367027.542626] FAST spr round 3 (radius: 25)
[45:27:02 -366611.824609] FAST spr round 4 (radius: 25)
[45:33:51 -365943.615352] FAST spr round 5 (radius: 25)
[45:40:00 -365781.570672] FAST spr round 6 (radius: 25)
[45:45:10 -365766.961420] FAST spr round 7 (radius: 25)
[45:50:02 -365752.796957] FAST spr round 8 (radius: 25)
[45:54:33 -365748.089831] FAST spr round 9 (radius: 25)
[45:58:43 -365747.249455] FAST spr round 10 (radius: 25)
[46:02:47 -365747.249443] Model parameter optimization (eps = 1.000000)
[46:03:09 -365737.764055] SLOW spr round 1 (radius: 5)
[46:10:54 -365595.712093] SLOW spr round 2 (radius: 5)
[46:18:10 -365564.513768] SLOW spr round 3 (radius: 5)
[46:24:49 -365562.476737] SLOW spr round 4 (radius: 5)
[46:31:23 -365558.943987] SLOW spr round 5 (radius: 5)
[46:37:45 -365558.943807] SLOW spr round 6 (radius: 10)
[46:45:35 -365520.280829] SLOW spr round 7 (radius: 5)
[46:53:57 -365492.880241] SLOW spr round 8 (radius: 5)
[46:58:37] [worker #2] ML tree search #15, logLikelihood: -365807.502940
[47:00:49 -365491.683651] SLOW spr round 9 (radius: 5)
[47:07:19 -365491.683589] SLOW spr round 10 (radius: 10)
[47:14:44 -365487.052521] SLOW spr round 11 (radius: 5)
[47:22:38 -365485.168703] SLOW spr round 12 (radius: 5)
[47:29:31 -365483.529506] SLOW spr round 13 (radius: 5)
[47:36:04 -365481.281097] SLOW spr round 14 (radius: 5)
[47:42:25 -365481.280970] SLOW spr round 15 (radius: 10)
[47:49:39 -365481.280969] SLOW spr round 16 (radius: 15)
[48:07:02 -365467.052116] SLOW spr round 17 (radius: 5)
[48:15:36 -365457.826475] SLOW spr round 18 (radius: 5)
[48:22:48 -365456.134668] SLOW spr round 19 (radius: 5)
[48:29:25 -365456.134436] SLOW spr round 20 (radius: 10)
[48:36:53 -365454.554225] SLOW spr round 21 (radius: 5)
[48:44:38 -365454.554225] SLOW spr round 22 (radius: 10)
[48:53:13 -365454.554225] SLOW spr round 23 (radius: 15)
[49:08:29 -365454.554225] SLOW spr round 24 (radius: 20)
[49:34:44 -365424.476742] SLOW spr round 25 (radius: 5)
[49:43:20 -365412.948650] SLOW spr round 26 (radius: 5)
[49:50:25 -365412.718018] SLOW spr round 27 (radius: 5)
[49:57:04 -365411.392031] SLOW spr round 28 (radius: 5)
[50:03:27 -365411.391790] SLOW spr round 29 (radius: 10)
[50:10:44 -365411.391788] SLOW spr round 30 (radius: 15)
[50:27:19 -365411.391788] SLOW spr round 31 (radius: 20)
[50:53:01 -365411.391788] SLOW spr round 32 (radius: 25)
[51:05:25] [worker #1] ML tree search #17, logLikelihood: -364920.630323
[51:23:17 -365374.126272] SLOW spr round 33 (radius: 5)
[51:31:53 -365346.976540] SLOW spr round 34 (radius: 5)
[51:39:01 -365346.976404] SLOW spr round 35 (radius: 10)
[51:46:56 -365344.414730] SLOW spr round 36 (radius: 5)
[51:54:33 -365344.414512] SLOW spr round 37 (radius: 10)
[52:02:59 -365344.414509] SLOW spr round 38 (radius: 15)
[52:18:28 -365344.414509] SLOW spr round 39 (radius: 20)
[52:44:22 -365310.643814] SLOW spr round 40 (radius: 5)
[52:52:31 -365310.643226] SLOW spr round 41 (radius: 10)
[53:01:52 -365307.372006] SLOW spr round 42 (radius: 5)
[53:09:32 -365305.937933] SLOW spr round 43 (radius: 5)
[53:16:15 -365305.937870] SLOW spr round 44 (radius: 10)
[53:19:16] [worker #2] ML tree search #18, logLikelihood: -364946.408736
[53:23:43 -365305.937870] SLOW spr round 45 (radius: 15)
[53:39:47 -365305.937870] SLOW spr round 46 (radius: 20)
[54:04:41 -365305.937870] SLOW spr round 47 (radius: 25)
[54:33:53 -365266.385696] SLOW spr round 48 (radius: 5)
[54:42:13 -365265.790366] SLOW spr round 49 (radius: 5)
[54:49:14 -365265.790354] SLOW spr round 50 (radius: 10)
[54:57:02 -365262.292130] SLOW spr round 51 (radius: 5)
[55:04:41 -365262.283953] SLOW spr round 52 (radius: 10)
[55:13:03 -365262.283923] SLOW spr round 53 (radius: 15)
[55:27:58 -365262.283923] SLOW spr round 54 (radius: 20)
[55:52:50 -365262.283923] SLOW spr round 55 (radius: 25)
[56:21:34 -365262.283923] Model parameter optimization (eps = 0.100000)

[56:21:49] [worker #0] ML tree search #19, logLikelihood: -365262.067158

[57:42:42] [worker #1] ML tree search #20, logLikelihood: -365009.923628

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.215632,0.230178) (0.102150,0.424915) (0.443147,0.911826) (0.239071,2.103508) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -364849.085447

AIC score: 733708.170895 / AICc score: 8777768.170895 / BIC score: 742162.466128
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=501).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 65 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43345/3_mltree/O43345.raxml.log

Analysis started: 06-Jul-2021 20:58:00 / finished: 09-Jul-2021 06:40:43

Elapsed time: 207762.571 seconds

Consumed energy: 18542.256 Wh (= 93 km in an electric car, or 464 km with an e-scooter!)