RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 18:20:07 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/2_msa/O43318_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/3_mltree/O43318.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626103207 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/2_msa/O43318_nogap_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 606 sites WARNING: Sequences tr_A0A2I3FR90_A0A2I3FR90_NOMLE_61853 and tr_A0A2K5Z3R4_A0A2K5Z3R4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2J8VQZ7_A0A2J8VQZ7_PONAB_9601 and tr_H0XAF1_H0XAF1_OTOGA_30611 are exactly identical! WARNING: Sequences tr_H2NLP2_H2NLP2_PONAB_9601 and sp_P80192_M3K9_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5RFL3_M3K7_PONAB_9601 and tr_A0A2I3LYE7_A0A2I3LYE7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_H2RCY2_H2RCY2_PANTR_9598 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and sp_O43318_M3K7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_F7H6S1_F7H6S1_MACMU_9544 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_A0A0D9RXG7_A0A0D9RXG7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_A0A1U7TCL6_A0A1U7TCL6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_A0A2K6D8Q7_A0A2K6D8Q7_MACNE_9545 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_A0A2K5ZSU5_A0A2K5ZSU5_MANLE_9568 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_A0A2R8ZZW1_A0A2R8ZZW1_PANPA_9597 are exactly identical! WARNING: Sequences tr_E2R3R6_E2R3R6_CANLF_9615 and tr_A0A384BTK6_A0A384BTK6_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2Q8J6_H2Q8J6_PANTR_9598 and tr_A0A2R8ZZF8_A0A2R8ZZF8_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QGC0_H2QGC0_PANTR_9598 and sp_Q02779_M3K10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A088A795_A0A088A795_APIME_7460 and tr_A0A2A3ED90_A0A2A3ED90_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A2X1G7_A2X1G7_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_I1NXQ9_I1NXQ9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A0A0E0NAK3_A0A0E0NAK3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A0A0D3F1D9_A0A0D3F1D9_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A0A0D9YN18_A0A0D9YN18_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_Q8GV28_Q8GV28_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0H5R9_A0A0E0H5R9_ORYNI_4536 and tr_A2XXC2_A2XXC2_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0H5R9_A0A0E0H5R9_ORYNI_4536 and tr_I1PPK1_I1PPK1_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0H5R9_A0A0E0H5R9_ORYNI_4536 and tr_A0A0D9ZQF6_A0A0D9ZQF6_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0H5R9_A0A0E0H5R9_ORYNI_4536 and tr_Q8GV29_Q8GV29_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HUK1_A0A0E0HUK1_ORYNI_4536 and tr_A2YFW8_A2YFW8_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HUK1_A0A0E0HUK1_ORYNI_4536 and tr_I1Q4D5_I1Q4D5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HUK1_A0A0E0HUK1_ORYNI_4536 and tr_A0A0E0E4V8_A0A0E0E4V8_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0HUK1_A0A0E0HUK1_ORYNI_4536 and tr_A0A0D3GJL4_A0A0D3GJL4_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0HUK1_A0A0E0HUK1_ORYNI_4536 and tr_A0A0E0ACW3_A0A0E0ACW3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_Q6DTV6_Q6DTV6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_I1QGL4_I1QGL4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_A0A0E0EJ71_A0A0E0EJ71_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_A0A0E0QFT0_A0A0E0QFT0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_A0A0D3GXK0_A0A0D3GXK0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_Q8GV30_Q8GV30_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IN43_A0A0E0IN43_ORYNI_4536 and tr_A2Z3N4_A2Z3N4_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IN43_A0A0E0IN43_ORYNI_4536 and tr_I1QQW9_I1QQW9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IN43_A0A0E0IN43_ORYNI_4536 and tr_A0A0E0EUH7_A0A0E0EUH7_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0IN43_A0A0E0IN43_ORYNI_4536 and tr_A0A0D3H9K3_A0A0D3H9K3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0IN43_A0A0E0IN43_ORYNI_4536 and tr_A0A0E0B5Z4_A0A0E0B5Z4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IN43_A0A0E0IN43_ORYNI_4536 and tr_Q7XXN2_Q7XXN2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F6VUC2_F6VUC2_MACMU_9544 and tr_A0A2I3LNV8_A0A2I3LNV8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6VUC2_F6VUC2_MACMU_9544 and tr_A0A2K6CZF3_A0A2K6CZF3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0E0CGF6_A0A0E0CGF6_9ORYZ_40149 and tr_A0A0D9VCS8_A0A0D9VCS8_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_A0A0E0Q194_A0A0E0Q194_ORYRU_4529 and tr_Q653Z6_Q653Z6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_M4D446_M4D446_BRARP_51351 and tr_A0A078GSW5_A0A078GSW5_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4E5G6_M4E5G6_BRARP_51351 and tr_A0A078FKC3_A0A078FKC3_BRANA_3708 are exactly identical! WARNING: Sequences tr_W2PW01_W2PW01_PHYPN_761204 and tr_W2KRX8_W2KRX8_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2PYG7_W2PYG7_PHYPN_761204 and tr_A0A0W8C9C0_A0A0W8C9C0_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2PYG7_W2PYG7_PHYPN_761204 and tr_W2IMN9_W2IMN9_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2Q694_W2Q694_PHYPN_761204 and tr_A0A0W8CIY8_A0A0W8CIY8_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q694_W2Q694_PHYPN_761204 and tr_W2L7T2_W2L7T2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2R4S5_W2R4S5_PHYPN_761204 and tr_A0A0W8D2L1_A0A0W8D2L1_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2R4S5_W2R4S5_PHYPN_761204 and tr_W2KJ21_W2KJ21_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6LRR0_A0A3B6LRR0_WHEAT_4565 and tr_A0A3B6MVS1_A0A3B6MVS1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A067FLE1_A0A067FLE1_CITSI_2711 and tr_V4U926_V4U926_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GNN3_A0A067GNN3_CITSI_2711 and tr_V4TBN8_V4TBN8_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A078GD42_A0A078GD42_BRANA_3708 and tr_A0A078HI36_A0A078HI36_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A078GD42_A0A078GD42_BRANA_3708 and tr_A0A0D3BM14_A0A0D3BM14_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D9QUU1_A0A0D9QUU1_CHLSB_60711 and tr_A0A2K5NJ63_A0A2K5NJ63_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9QUU1_A0A0D9QUU1_CHLSB_60711 and tr_A0A2K6BFN1_A0A2K6BFN1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0A0LML1_A0A0A0LML1_CUCSA_3659 and tr_A0A1S3BQ63_A0A1S3BQ63_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0D2M4W2_A0A0D2M4W2_GOSRA_29730 and tr_A0A1U8LM17_A0A1U8LM17_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2REG1_A0A0D2REG1_GOSRA_29730 and tr_A0A1U8MLC5_A0A1U8MLC5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0L9THB5_A0A0L9THB5_PHAAN_3914 and tr_A0A1S3USP9_A0A1S3USP9_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A093JRR1_A0A093JRR1_STRCA_441894 and tr_A0A099ZLV2_A0A099ZLV2_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2I0MJ01_A0A2I0MJ01_COLLI_8932 and tr_A0A1V4K6K4_A0A1V4K6K4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0WVM8_A0A0V0WVM8_9BILA_92179 and tr_A0A0V1LRQ9_A0A0V1LRQ9_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A1S4AA74_A0A1S4AA74_TOBAC_4097 and tr_A0A1U7YTV3_A0A1U7YTV3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AGT4_A0A1S4AGT4_TOBAC_4097 and tr_A0A1U7VYT6_A0A1U7VYT6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AL66_A0A1S4AL66_TOBAC_4097 and tr_A0A1S4D257_A0A1S4D257_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S4AL66_A0A1S4AL66_TOBAC_4097 and tr_A0A1U7Y7C5_A0A1U7Y7C5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CIV7_A0A1S4CIV7_TOBAC_4097 and tr_A0A1U7X550_A0A1U7X550_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A2D0QP22_A0A2D0QP22_ICTPU_7998 and tr_A0A2D0QRF0_A0A2D0QRF0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8E0Q9_A0A1U8E0Q9_CAPAN_4072 and tr_A0A2G3BW57_A0A2G3BW57_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2Z1K5_A0A2G2Z1K5_CAPAN_4072 and tr_A0A2G3BZP5_A0A2G3BZP5_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2J6JMT0_A0A2J6JMT0_LACSA_4236 and tr_A0A2J6MI55_A0A2J6MI55_LACSA_4236 are exactly identical! WARNING: Sequences tr_A0A2U4A929_A0A2U4A929_TURTR_9739 and tr_A0A2Y9N3G2_A0A2Y9N3G2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AVN0_A0A2U4AVN0_TURTR_9739 and tr_A0A384B8N5_A0A384B8N5_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 81 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318.raxml.reduced.phy Alignment comprises 1 partitions and 606 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 606 Gaps: 39.08 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/3_mltree/O43318.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 152 / 12160 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -184833.088743 [00:00:00 -184833.088743] Initial branch length optimization [00:00:01 -173361.782449] Model parameter optimization (eps = 0.100000) [00:00:57] Tree #1, final logLikelihood: -172736.671146 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.058658,0.114724) (0.141334,0.164834) (0.322018,0.734723) (0.477990,1.534300) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/O43318/4_raxmlng_ancestral/O43318.raxml.log Analysis started: 12-Jul-2021 18:20:07 / finished: 12-Jul-2021 18:21:11 Elapsed time: 63.552 seconds Consumed energy: 4.064 Wh